
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.48.4103/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.48.4103/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/373271/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD-TP/2844303/1.GDAC_clinicalDataPicker.Finished/STAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=STAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=STAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=178, in cluster file=306, common to both=177
[1]  75 177
[1] "Amp Peak  1(1p36.22) mutation analysis"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            24                            153 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            24                            153 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           55                           122 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           55                           122 
[1] "Amp Peak  3(1q42.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           53                           124 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           53                           124 
[1] "Amp Peak  4(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           50                           127 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           50                           127 
[1] "Amp Peak  5(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            46                            131 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            46                            131 
[1] "Amp Peak  6(5p13.1) mutation analysis"
[1] 3
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                           44                           133 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                           44                           133 
[1] "Amp Peak  7(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           47                           130 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           47                           130 
[1] "Amp Peak  8(6q12) mutation analysis"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         36                         141 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         36                         141 
[1] "Amp Peak  9(6q21) mutation analysis"
[1] 3
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         30                         147 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         30                         147 
[1] "Amp Peak 10(7p22.3) mutation analysis"
[1] 3
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                           83                            94 
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                           83                            94 
[1] "Amp Peak 11(7p11.2) mutation analysis"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                           76                           101 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                           76                           101 
[1] "Amp Peak 12(7q21.2) mutation analysis"
[1] 3
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                           79                            98 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                           79                            98 
[1] "Amp Peak 13(8p23.1) mutation analysis"
[1] 3
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                           63                           114 
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                           63                           114 
[1] "Amp Peak 14(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                           109                             68 
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                           109                             68 
[1] "Amp Peak 15(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                           24                           153 
  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                           24                           153 
[1] "Amp Peak 16(9q34.3) mutation analysis"
[1] 3
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                           41                           136 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                           41                           136 
[1] "Amp Peak 17(10q26.13) mutation analysis"
[1] 3
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                             36                             141 
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                             36                             141 
[1] "Amp Peak 18(11p13) mutation analysis"
[1] 3
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          29                          148 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          29                          148 
[1] "Amp Peak 19(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                            33                            144 
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                            33                            144 
[1] "Amp Peak 20(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                            40                            137 
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                            40                            137 
[1] "Amp Peak 21(12q15) mutation analysis"
[1] 3
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                          40                          137 
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                          40                          137 
[1] "Amp Peak 22(13q12.3) mutation analysis"
[1] 3
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                            64                            113 
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                            64                            113 
[1] "Amp Peak 23(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                            74                            103 
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                            74                            103 
[1] "Amp Peak 24(15q26.1) mutation analysis"
[1] 3
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                            44                            133 
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                            44                            133 
[1] "Amp Peak 25(17q12) mutation analysis"
[1] 3
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                          47                          130 
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                          47                          130 
[1] "Amp Peak 26(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            50                            127 
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            50                            127 
[1] "Amp Peak 27(19q12) mutation analysis"
[1] 3
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          46                          131 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          46                          131 
[1] "Amp Peak 28(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           108                             69 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           108                             69 
[1] "Amp Peak 29(Xq26.2) mutation analysis"
[1] 3
  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                           33                           144 
  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                           33                           144 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            43                            134 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            43                            134 
[1] "Del Peak  2(1p13.2) mutation analysis"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           31                           146 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           31                           146 
[1] "Del Peak  3(1q44) mutation analysis"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         12                         165 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         12                         165 
[1] "Del Peak  4(2q32.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           20                           157 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           20                           157 
[1] "Del Peak  5(2q37.2) mutation analysis"
[1] 3
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                           23                           154 
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                           23                           154 
[1] "Del Peak  6(3p26.1) mutation analysis"
[1] 3
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           47                           130 
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           47                           130 
[1] "Del Peak  7(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           58                           119 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           58                           119 
[1] "Del Peak  8(3q26.31) mutation analysis"
[1] 3
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            18                            159 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            18                            159 
[1] "Del Peak  9(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           66                           111 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           66                           111 
[1] "Del Peak 10(4q34.3) mutation analysis"
[1] 3
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                           64                           113 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                           64                           113 
[1] "Del Peak 11(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           48                           129 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           48                           129 
[1] "Del Peak 12(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           39                           138 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           39                           138 
[1] "Del Peak 13(6q26) mutation analysis"
[1] 3
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         41                         136 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         41                         136 
[1] "Del Peak 14(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                           21                           156 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                           21                           156 
[1] "Del Peak 15(7q36.3) mutation analysis"
[1] 3
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                           31                           146 
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                           31                           146 
[1] "Del Peak 16(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                           45                           132 
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                           45                           132 
[1] "Del Peak 17(9p23) mutation analysis"
[1] 3
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         70                         107 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         70                         107 
[1] "Del Peak 18(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                           66                           111 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                           66                           111 
[1] "Del Peak 19(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                            37                            140 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                            37                            140 
[1] "Del Peak 20(10p14) mutation analysis"
[1] 3
  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                          24                          153 
  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                          24                          153 
[1] "Del Peak 21(10q22.3) mutation analysis"
[1] 3
  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                            24                            153 
  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                            24                            153 
[1] "Del Peak 22(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             38                             139 
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             38                             139 
[1] "Del Peak 23(11p15.4) mutation analysis"
[1] 3
  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                            40                            137 
  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                            40                            137 
[1] "Del Peak 24(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                            39                            138 
  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                            39                            138 
[1] "Del Peak 25(12p13.31) mutation analysis"
[1] 3
  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                             26                             151 
  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                             26                             151 
[1] "Del Peak 26(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                            26                            151 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                            26                            151 
[1] "Del Peak 27(14q21.1) mutation analysis"
[1] 3
  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                            41                            136 
  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                            41                            136 
[1] "Del Peak 28(14q32.33) mutation analysis"
[1] 3
  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                             46                             131 
  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                             46                             131 
[1] "Del Peak 29(15q11.2) mutation analysis"
[1] 3
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                            40                            137 
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                            40                            137 
[1] "Del Peak 30(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                            41                            136 
  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                            41                            136 
[1] "Del Peak 31(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                            23                            154 
  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                            23                            154 
[1] "Del Peak 32(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                            58                            119 
  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                            58                            119 
[1] "Del Peak 33(17p12) mutation analysis"
[1] 3
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                          60                          117 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                          60                          117 
[1] "Del Peak 34(17q24.3) mutation analysis"
[1] 3
  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                            27                            150 
  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                            27                            150 
[1] "Del Peak 35(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                            69                            108 
  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                            69                            108 
[1] "Del Peak 36(18q23) mutation analysis"
[1] 3
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                          64                          113 
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                          64                          113 
[1] "Del Peak 37(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                            53                            124 
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                            53                            124 
[1] "Del Peak 38(19q13.11) mutation analysis"
[1] 3
  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                             24                             153 
  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                             24                             153 
[1] "Del Peak 39(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                            27                            150 
  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                            27                            150 
[1] "Del Peak 40(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                            27                            150 
  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                            27                            150 
[1] "Del Peak 41(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                            54                            123 
  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                            54                            123 
[1] "Del Peak 42(21q22.13) mutation analysis"
[1] 3
  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                             58                             119 
  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                             58                             119 
[1] "Del Peak 43(22q13.31) mutation analysis"
[1] 3
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             53                             124 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             53                             124 
[1] "Del Peak 44(Xp22.2) mutation analysis"
[1] 3
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           30                           147 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           30                           147 
[1] "Del Peak 45(Xp21.1) mutation analysis"
[1] 3
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           30                           147 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           30                           147 
[1] "Del Peak 46(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            22                            155 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            22                            155 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "TUMORSTAGE"                            
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "COMPLETENESS.OF.RESECTION"             
[16] "NUMBER.OF.LYMPH.NODES"                 
[17] "BATCHNUMBER"                           

Input Data has 17 rows and 177 columns.

[1] "Batch" "17"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4191 TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-4292 TCGA-BR-4294 TCGA-BR-4357 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 TCGA-BR-4367 TCGA-BR-4368 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 
          NA           NA           NA           29           NA           NA 
TCGA-BR-6455 TCGA-BR-6456 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
          43           NA           41           41           26           25 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
          19           19           52           66           30           37 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
          20           34           23           20            8           37 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
          45           14           38            4           32           25 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
          21            5          138           30           29           21 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
           5           33           25           40           21           29 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
          15           14           22            8           13            8 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
          36           47           45           23            6           18 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
          28           12           24           NA           24           16 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 
          13            4            7            3           22           25 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5804 
          21           11           15            9            2           NA 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
         609           92          822          485           31         1611 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4442 TCGA-CG-4443 
         245         1644          122          426           NA          912 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        1431          580          366          669           31          273 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 
         576          215          365           31           NA           NA 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
          31           31          211           31           31           30 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
         182           29         2131          366          457          881 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
         944         1980          122         1674          641          243 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
         263          109          138          298          476          293 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
         249          210           21          181          201          126 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
          51          111          143          123           89          130 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
          19          237          199           61           NA           12 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 
           6           92          109           31           NA           17 
TCGA-HF-7131 TCGA-HF-7132 TCGA-HF-7133 TCGA-HF-7134 TCGA-HF-7136 TCGA-HJ-7597 
          NA           NA           NA           NA           NA           NA 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
         209          108           77 
Variable 1:'AGE':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=94,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=27,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "HISTOLOGICAL.TYPE"                     
 [4] "PATHOLOGY.T"                           
 [5] "PATHOLOGY.N"                           
 [6] "PATHOLOGICSPREAD(M)"                   
 [7] "TUMOR.STAGE"                           
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "COMPLETENESS.OF.RESECTION"             
[10] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
26 48 58 29 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 177 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=47, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=7, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 6 54 64 43 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 6 54 64 43 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 6 54 64 43 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 6 54 64 43 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
56 61 29 20 
[1] "table(vv)"
vv
N0 N1 N2 N3 
56 61 29 20 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
56 61 29 20 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
56 61 29 20 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 26  48  58  29 
[1] "table(vv)"
vv
  I  II III  IV 
 26  48  58  29 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 26  48  58  29 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 26  48  58  29 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=27, binary=FALSE, numeric=TRUE

Clustering(1) Variable = Amp Peak  1(1p36.22) mutation analysis
D1V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  1(1P36.22) MUTATED    17   2
  AMP PEAK  1(1P36.22) WILD-TYPE 105  16
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            19                            121 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                             2                             16 
$`AMP PEAK  1(1P36.22) MUTATED`
TCGA-BR-7197 TCGA-BR-7901 TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-CD-5799 TCGA-CD-5802 
        1.48         0.95         0.72         0.23         0.69         0.30 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-5718 TCGA-CG-5732 TCGA-D7-6521 
       29.98        47.05        19.07         1.02        55.04         8.19 
TCGA-D7-6527 TCGA-D7-6528 TCGA-FP-7829 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        4.14         1.68         0.20        26.43         6.87         3.55 
TCGA-IP-7968 
        2.53 

$`AMP PEAK  1(1P36.22) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        0.26         1.22         0.46         1.25         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 
        0.82         0.69         0.16         4.54         0.99         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.92         0.39         0.79         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.13         0.10         0.72         0.82         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 
       52.96         8.05        54.05         4.01        14.01        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 
        3.58         4.54         9.80        15.65         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        0.69         5.95         6.61         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
       72.23         0.39         3.02         3.58         1.02        59.05 
TCGA-FP-8631 
        0.56 

  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                          0.20                           0.07 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                         55.04                          72.23 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                          2.53                           1.18 
[1] "0.2 - 55.0 (2.5)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
[1] "hr=" "1.8"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED      5   19
  AMP PEAK  1(1P36.22) WILD-TYPE   65   88
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  FEMALE                            5                             65
  MALE                             19                             88
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  1(1P36.22) MUTATED                                       4
  AMP PEAK  1(1P36.22) WILD-TYPE                                    21
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  1(1P36.22) MUTATED                                                        9
  AMP PEAK  1(1P36.22) WILD-TYPE                                                     78
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  1(1P36.22) MUTATED                                           1
  AMP PEAK  1(1P36.22) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  1(1P36.22) MUTATED                                                   2
  AMP PEAK  1(1P36.22) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  1(1P36.22) MUTATED                                                    1
  AMP PEAK  1(1P36.22) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  1(1P36.22) MUTATED                                                  1
  AMP PEAK  1(1P36.22) WILD-TYPE                                                9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  1(1P36.22) MUTATED                                                                        4
  AMP PEAK  1(1P36.22) WILD-TYPE                                                                     32
D1V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  1(1P36.22) MUTATED    1  9 11  2
  AMP PEAK  1(1P36.22) WILD-TYPE  5 45 53 41
D1V5, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  T1                            1                              5
  T2                            9                             45
  T3                           11                             53
  T4                            2                             41
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK  1(1P36.22) MUTATED    5 11  3  4
  AMP PEAK  1(1P36.22) WILD-TYPE 51 50 26 16
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  N0                            5                             51
  N1                           11                             50
  N2                            3                             26
  N3                            4                             16
                                vv
clus                              M0  M1  MX
  AMP PEAK  1(1P36.22) MUTATED    20   1   3
  AMP PEAK  1(1P36.22) WILD-TYPE 126  17  10
D1V7, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  M0                           20                            126
  M1                            1                             17
  MX                            3                             10
                                vv
clus                              I II III IV
  AMP PEAK  1(1P36.22) MUTATED    3  7  11  1
  AMP PEAK  1(1P36.22) WILD-TYPE 23 41  47 28
D1V8, multiclass
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  I                              3                             23
  II                             7                             41
  III                           11                             47
  IV                             1                             28
D1V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED      1   23
  AMP PEAK  1(1P36.22) WILD-TYPE    4  149
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  NO                             1                              4
  YES                           23                            149
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK  1(1P36.22) MUTATED    17   0   0   3
  AMP PEAK  1(1P36.22) WILD-TYPE 106   7  12  22
D1V10, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  R0                           17                            106
  R1                            0                              7
  R2                            0                             12
  RX                            3                             22
D1V11, continuous

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q21.3) MUTATED   31  7
  AMP PEAK  2(1Q21.3) WILD-TYPE 91 11
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           38                           102 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                            7                            11 
$`AMP PEAK  2(1Q21.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6705 TCGA-BR-7197 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 
        1.35         1.71         1.48         0.69         4.54         0.95 
TCGA-BR-A4J1 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-CD-5800 TCGA-CG-4436 TCGA-CG-4438 
        0.72         0.43         0.23         0.36        52.96        54.05 
TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 
       47.05        21.99        18.94         7.07        12.00         1.02 
TCGA-CG-5724 TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 
       12.03         4.01         4.54        15.65         8.19         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        4.14         1.68         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8631 
        0.62        72.23         0.39         3.02         1.02         0.56 
TCGA-HJ-7597 TCGA-IN-7808 
       26.43         3.55 

$`AMP PEAK  2(1Q21.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         0.62         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 
        0.46         1.25         0.13         1.05         0.82         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 
        0.53         0.13         0.10         0.72         0.82         0.69 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       15.95         1.02         8.05         4.01        14.01        29.98 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 
       19.07        12.03         1.02         8.98         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
       70.06        15.02        28.96        31.04        65.10        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 
       21.07         7.99         8.65         3.58         9.80         9.63 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-EQ-8122 TCGA-F1-6177 
        6.90         0.69         5.95         3.65         7.79         6.54 
TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-IN-7806 TCGA-IP-7968 
        2.01         0.20         3.58        59.05         6.87         2.53 

  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                         0.23                          0.07 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                        4.025                         1.020 
[1] "0.2 - 72.2 (4.0)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     21   34
  AMP PEAK  2(1Q21.3) WILD-TYPE   49   73
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  FEMALE                          21                            49
  MALE                            34                            73
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                       6
  AMP PEAK  2(1Q21.3) WILD-TYPE                                    19
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  2(1Q21.3) MUTATED                                                       25
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                     62
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                           1
  AMP PEAK  2(1Q21.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                                   3
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                                    2
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                                  6
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  2(1Q21.3) MUTATED                                                                        9
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                                     27
D2V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  2(1Q21.3) MUTATED    2 20 22  8
  AMP PEAK  2(1Q21.3) WILD-TYPE  4 34 42 35
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  T1                           2                             4
  T2                          20                            34
  T3                          22                            42
  T4                           8                            35
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  2(1Q21.3) MUTATED   13 18  8  9
  AMP PEAK  2(1Q21.3) WILD-TYPE 43 43 21 11
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  N0                          13                            43
  N1                          18                            43
  N2                           8                            21
  N3                           9                            11
                               vv
clus                             M0  M1  MX
  AMP PEAK  2(1Q21.3) MUTATED    43   5   7
  AMP PEAK  2(1Q21.3) WILD-TYPE 103  13   6
D2V7, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  M0                          43                           103
  M1                           5                            13
  MX                           7                             6
                               vv
clus                             I II III IV
  AMP PEAK  2(1Q21.3) MUTATED    9 12  17 10
  AMP PEAK  2(1Q21.3) WILD-TYPE 17 36  41 19
D2V8, multiclass
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  I                             9                            17
  II                           12                            36
  III                          17                            41
  IV                           10                            19
D2V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED      4   51
  AMP PEAK  2(1Q21.3) WILD-TYPE    1  121
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  NO                            4                             1
  YES                          51                           121
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  2(1Q21.3) MUTATED   35  4  4  9
  AMP PEAK  2(1Q21.3) WILD-TYPE 88  3  8 16
D2V10, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  R0                          35                            88
  R1                           4                             3
  R2                           4                             8
  RX                           9                            16
D2V11, continuous

Clustering(3) Variable = Amp Peak  3(1q42.3) mutation analysis
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(1Q42.3) MUTATED   34  6
  AMP PEAK  3(1Q42.3) WILD-TYPE 88 12
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           40                           100 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                            6                            12 
$`AMP PEAK  3(1Q42.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 
        1.35         0.62         1.71         1.48         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-A4J1 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.69         4.54         0.72         0.43         0.23         0.10 
TCGA-CD-5800 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 
        0.36        52.96        54.05        19.07        21.99        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5719 TCGA-CG-5730 TCGA-D7-5578 TCGA-D7-5579 
        7.07        12.00         1.02         4.01         3.58         4.54 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 
        9.63         8.19         6.61         4.14         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 
        2.93         4.27         0.62        72.23         0.39         3.02 
TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
        1.02         0.56        26.43         3.55 

$`AMP PEAK  3(1Q42.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.82         0.62         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        1.12         0.76         0.66         0.26         1.22         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        1.25         0.13         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J6 
        0.92         0.39         0.79         0.79         0.53         0.13 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.72         0.82         0.69         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
       20.02         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 
        4.01        14.01        29.98        47.05        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        8.98         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        8.65         9.80        15.65         6.90         0.69         5.95 
TCGA-D7-6528 TCGA-D7-6815 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 
        1.68         3.65         7.79         6.54         2.01         0.20 
TCGA-FP-7998 TCGA-FP-8209 TCGA-IN-7806 TCGA-IP-7968 
        3.58        59.05         6.87         2.53 

  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                        3.565                         1.020 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     17   36
  AMP PEAK  3(1Q42.3) WILD-TYPE   53   71
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                          17                            53
  MALE                            36                            71
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                       4
  AMP PEAK  3(1Q42.3) WILD-TYPE                                    21
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  3(1Q42.3) MUTATED                                                       26
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                     61
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                           1
  AMP PEAK  3(1Q42.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                                   3
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                                    2
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                                  7
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  3(1Q42.3) MUTATED                                                                        9
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                                     27
D3V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  3(1Q42.3) MUTATED    1 18 21 10
  AMP PEAK  3(1Q42.3) WILD-TYPE  5 36 43 33
D3V5, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  T1                           1                             5
  T2                          18                            36
  T3                          21                            43
  T4                          10                            33
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  3(1Q42.3) MUTATED   17 14  9  7
  AMP PEAK  3(1Q42.3) WILD-TYPE 39 47 20 13
D3V6, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  N0                          17                            39
  N1                          14                            47
  N2                           9                            20
  N3                           7                            13
                               vv
clus                             M0  M1  MX
  AMP PEAK  3(1Q42.3) MUTATED    41   5   7
  AMP PEAK  3(1Q42.3) WILD-TYPE 105  13   6
D3V7, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  M0                          41                           105
  M1                           5                            13
  MX                           7                             6
                               vv
clus                             I II III IV
  AMP PEAK  3(1Q42.3) MUTATED    9 14  14 10
  AMP PEAK  3(1Q42.3) WILD-TYPE 17 34  44 19
D3V8, multiclass
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  I                             9                            17
  II                           14                            34
  III                          14                            44
  IV                           10                            19
D3V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED      3   50
  AMP PEAK  3(1Q42.3) WILD-TYPE    2  122
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  NO                            3                             2
  YES                          50                           122
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  3(1Q42.3) MUTATED   36  2  3  9
  AMP PEAK  3(1Q42.3) WILD-TYPE 87  5  9 16
D3V10, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  R0                          36                            87
  R1                           2                             5
  R2                           3                             9
  RX                           9                            16
D3V11, continuous

Clustering(4) Variable = Amp Peak  4(3q26.2) mutation analysis
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(3Q26.2) MUTATED   31  4
  AMP PEAK  4(3Q26.2) WILD-TYPE 91 14
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           35                           105 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                            4                            14 
$`AMP PEAK  4(3Q26.2) MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6565 TCGA-BR-6801 TCGA-BR-6802 
        5.62         0.10         0.95         0.62         1.12         0.76 
TCGA-BR-7196 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-A4IU TCGA-BR-A4J4 
        1.22         0.16         4.54         0.95         0.59         0.53 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
        0.69         0.49         3.02        15.95        52.96         8.05 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4472 TCGA-CG-5719 
       47.05        19.07        12.03         1.02        12.00         1.02 
TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-6521 TCGA-D7-6815 TCGA-EQ-5647 TCGA-FP-7735 
       12.03        15.02         8.19         3.65         0.62         0.39 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 
        3.02         3.58         1.02         0.56        26.43 

$`AMP PEAK  4(3Q26.2) WILD-TYPE`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 
        1.41         1.35         1.35         0.85         0.82         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6803 
        1.71         2.17         0.99         1.22         0.66         0.66 
TCGA-BR-6852 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        0.26         1.48         0.46         1.25         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.82         0.69         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        1.48         0.76         0.20         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.72         0.79         0.43         0.13         0.23         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.72         0.82         0.36         0.30         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       27.02         1.02        54.05         4.01        14.01        29.98 
TCGA-CG-4460 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
       21.99         8.98        18.94         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       70.06        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
       15.65         9.63         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        4.14         1.68         4.70         4.04         2.93         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8209 
        7.79         6.54         2.01        72.23         0.20        59.05 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                        52.96                         72.23 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                         1.22                          1.25 
[1] "0.1 - 53.0 (1.2)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
[1] "hr=" "1.1"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) MUTATED     15   35
  AMP PEAK  4(3Q26.2) WILD-TYPE   55   72
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  FEMALE                          15                            55
  MALE                            35                            72
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  4(3Q26.2) MUTATED                                       8
  AMP PEAK  4(3Q26.2) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  4(3Q26.2) MUTATED                                                       30
  AMP PEAK  4(3Q26.2) WILD-TYPE                                                     57
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  4(3Q26.2) MUTATED                                           1
  AMP PEAK  4(3Q26.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  4(3Q26.2) MUTATED                                                   2
  AMP PEAK  4(3Q26.2) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  4(3Q26.2) MUTATED                                                    0
  AMP PEAK  4(3Q26.2) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  4(3Q26.2) MUTATED                                                  1
  AMP PEAK  4(3Q26.2) WILD-TYPE                                                9
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  4(3Q26.2) MUTATED                                                                        5
  AMP PEAK  4(3Q26.2) WILD-TYPE                                                                     31
D4V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  4(3Q26.2) MUTATED    0 15 19 12
  AMP PEAK  4(3Q26.2) WILD-TYPE  6 39 45 31
D4V5, multiclass
    clus
vv   AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  T1                           0                             6
  T2                          15                            39
  T3                          19                            45
  T4                          12                            31
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  4(3Q26.2) MUTATED   14 19  8  6
  AMP PEAK  4(3Q26.2) WILD-TYPE 42 42 21 14
D4V6, multiclass
    clus
vv   AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  N0                          14                            42
  N1                          19                            42
  N2                           8                            21
  N3                           6                            14
                               vv
clus                             M0  M1  MX
  AMP PEAK  4(3Q26.2) MUTATED    36   6   8
  AMP PEAK  4(3Q26.2) WILD-TYPE 110  12   5
D4V7, multiclass
    clus
vv   AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  M0                          36                           110
  M1                           6                            12
  MX                           8                             5
                               vv
clus                             I II III IV
  AMP PEAK  4(3Q26.2) MUTATED    7 11  19  8
  AMP PEAK  4(3Q26.2) WILD-TYPE 19 37  39 21
D4V8, multiclass
     clus
vv    AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  I                             7                            19
  II                           11                            37
  III                          19                            39
  IV                            8                            21
D4V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) MUTATED      1   49
  AMP PEAK  4(3Q26.2) WILD-TYPE    4  123
     clus
vv    AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  NO                            1                             4
  YES                          49                           123
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  4(3Q26.2) MUTATED   33  1  4  9
  AMP PEAK  4(3Q26.2) WILD-TYPE 90  6  8 16
D4V10, multiclass
    clus
vv   AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  R0                          33                            90
  R1                           1                             6
  R2                           4                             8
  RX                           9                            16
D4V11, continuous

Clustering(5) Variable = Amp Peak  5(5p15.33) mutation analysis
D5V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  5(5P15.33) MUTATED   30  6
  AMP PEAK  5(5P15.33) WILD-TYPE 92 12
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                            36                            104 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                             6                             12 
$`AMP PEAK  5(5P15.33) MUTATED`
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7901 
        1.48         1.25         1.05         0.82         0.69         0.95 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4444 
        0.36         0.49        52.96        54.05        14.01        47.05 
TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5722 
       12.03        18.94         7.07        12.00         1.02         0.95 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       12.03        15.02         4.01         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 
        9.80         6.61         4.14         1.68         4.04         2.93 
TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 TCGA-IN-7808 
        0.62        72.23         0.39         0.20         1.02         3.55 

$`AMP PEAK  5(5P15.33) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7723 
        0.26         1.22         0.46         0.13         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.72         0.82         0.69         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 
        3.02        27.02        15.95         1.02         8.05         4.01 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 
       29.98        19.07        21.99         1.02         8.98         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 
       70.06        28.96        31.04        65.10        55.04        21.07 
TCGA-CG-5734 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        7.99        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        5.95         3.65         4.70         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 
        2.01         3.02         3.58        59.05         0.56        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                          0.20                           0.07 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                         3.795                          1.020 
[1] "0.2 - 72.2 (3.8)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK  5(5P15.33) MUTATED"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  5(5P15.33) WILD-TYPE"   "AMP PEAK  5(5P15.33) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK  5(5P15.33) WILD-TYPE" "AMP PEAK  5(5P15.33) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  5(5P15.33) MUTATED" "AMP PEAK  5(5P15.33) WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED     13   33
  AMP PEAK  5(5P15.33) WILD-TYPE   57   74
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  FEMALE                           13                             57
  MALE                             33                             74
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  5(5P15.33) MUTATED                                       4
  AMP PEAK  5(5P15.33) WILD-TYPE                                    21
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  5(5P15.33) MUTATED                                                       18
  AMP PEAK  5(5P15.33) WILD-TYPE                                                     69
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  5(5P15.33) MUTATED                                           0
  AMP PEAK  5(5P15.33) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  5(5P15.33) MUTATED                                                   4
  AMP PEAK  5(5P15.33) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  5(5P15.33) MUTATED                                                    2
  AMP PEAK  5(5P15.33) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  5(5P15.33) MUTATED                                                  6
  AMP PEAK  5(5P15.33) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  5(5P15.33) MUTATED                                                                        9
  AMP PEAK  5(5P15.33) WILD-TYPE                                                                     27
D5V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  5(5P15.33) MUTATED    0 18 20  5
  AMP PEAK  5(5P15.33) WILD-TYPE  6 36 44 38
D5V5, multiclass
    clus
vv   AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  T1                            0                              6
  T2                           18                             36
  T3                           20                             44
  T4                            5                             38
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK  5(5P15.33) MUTATED   12 16  7  7
  AMP PEAK  5(5P15.33) WILD-TYPE 44 45 22 13
D5V6, multiclass
    clus
vv   AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  N0                           12                             44
  N1                           16                             45
  N2                            7                             22
  N3                            7                             13
                                vv
clus                              M0  M1  MX
  AMP PEAK  5(5P15.33) MUTATED    38   5   3
  AMP PEAK  5(5P15.33) WILD-TYPE 108  13  10
D5V7, multiclass
    clus
vv   AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  M0                           38                            108
  M1                            5                             13
  MX                            3                             10
                                vv
clus                              I II III IV
  AMP PEAK  5(5P15.33) MUTATED    6 15   9 11
  AMP PEAK  5(5P15.33) WILD-TYPE 20 33  49 18
D5V8, multiclass
     clus
vv    AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  I                              6                             20
  II                            15                             33
  III                            9                             49
  IV                            11                             18
D5V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(5P15.33) MUTATED      3   43
  AMP PEAK  5(5P15.33) WILD-TYPE    2  129
     clus
vv    AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  NO                             3                              2
  YES                           43                            129
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  5(5P15.33) MUTATED   31  3  4  5
  AMP PEAK  5(5P15.33) WILD-TYPE 92  4  8 20
D5V10, multiclass
    clus
vv   AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  R0                           31                             92
  R1                            3                              4
  R2                            4                              8
  RX                            5                             20
D5V11, continuous

Clustering(6) Variable = Amp Peak  6(5p13.1) mutation analysis
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(5P13.1) MUTATED   27  6
  AMP PEAK  6(5P13.1) WILD-TYPE 95 12
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                           33                           107 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                            6                            12 
$`AMP PEAK  6(5P13.1) MUTATED`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.35         1.48         1.25         1.05         0.82         0.69 
TCGA-BR-7901 TCGA-CD-5801 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4455 
        0.95         0.49        52.96        54.05        47.05        12.03 
TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5722 
       21.99        18.94         7.07        12.00         1.02         0.95 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       12.03        15.02         4.01         3.58         4.54         9.80 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6875 
        4.14         1.68         4.04         2.93         0.62        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-IN-7808 
        0.39         0.20         3.55 

$`AMP PEAK  6(5P13.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.22         0.46         0.13         0.16         4.54         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.59         0.92         0.39         0.79         0.72         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.53         0.43         0.13         0.23         0.10         0.72 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.69         0.36         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 
        3.02        27.02        15.95         1.02         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 
       14.01        29.98        19.07         1.02         8.98         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 
       70.06        28.96        31.04        65.10        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        7.99         8.65        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 
        0.69         5.95         6.61         3.65         4.70         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
        7.79         6.54         2.01         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
       59.05         0.56        26.43         6.87         2.53 

  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                         0.20                          0.07 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE 
                         3.58                          1.02 
[1] "0.2 - 72.2 (3.6)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  6(5P13.1) WILD-TYPE"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK  6(5P13.1) MUTATED"   "AMP PEAK  6(5P13.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(5P13.1) WILD-TYPE" "AMP PEAK  6(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  6(5P13.1) MUTATED" "AMP PEAK  6(5P13.1) WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5P13.1) MUTATED     12   32
  AMP PEAK  6(5P13.1) WILD-TYPE   58   75
        clus
vv       AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  FEMALE                          12                            58
  MALE                            32                            75
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  6(5P13.1) MUTATED                                       5
  AMP PEAK  6(5P13.1) WILD-TYPE                                    20
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  6(5P13.1) MUTATED                                                       18
  AMP PEAK  6(5P13.1) WILD-TYPE                                                     69
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  6(5P13.1) MUTATED                                           0
  AMP PEAK  6(5P13.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  6(5P13.1) MUTATED                                                   4
  AMP PEAK  6(5P13.1) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  6(5P13.1) MUTATED                                                    1
  AMP PEAK  6(5P13.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  6(5P13.1) MUTATED                                                  4
  AMP PEAK  6(5P13.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  6(5P13.1) MUTATED                                                                        9
  AMP PEAK  6(5P13.1) WILD-TYPE                                                                     27
D6V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  6(5P13.1) MUTATED    0 16 18  7
  AMP PEAK  6(5P13.1) WILD-TYPE  6 38 46 36
D6V5, multiclass
    clus
vv   AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  T1                           0                             6
  T2                          16                            38
  T3                          18                            46
  T4                           7                            36
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  6(5P13.1) MUTATED   10 18  5  7
  AMP PEAK  6(5P13.1) WILD-TYPE 46 43 24 13
D6V6, multiclass
    clus
vv   AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  N0                          10                            46
  N1                          18                            43
  N2                           5                            24
  N3                           7                            13
                               vv
clus                             M0  M1  MX
  AMP PEAK  6(5P13.1) MUTATED    36   6   2
  AMP PEAK  6(5P13.1) WILD-TYPE 110  12  11
D6V7, multiclass
    clus
vv   AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  M0                          36                           110
  M1                           6                            12
  MX                           2                            11
                               vv
clus                             I II III IV
  AMP PEAK  6(5P13.1) MUTATED    6 14   7 12
  AMP PEAK  6(5P13.1) WILD-TYPE 20 34  51 17
D6V8, multiclass
     clus
vv    AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  I                             6                            20
  II                           14                            34
  III                           7                            51
  IV                           12                            17
D6V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(5P13.1) MUTATED      3   41
  AMP PEAK  6(5P13.1) WILD-TYPE    2  131
     clus
vv    AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  NO                            3                             2
  YES                          41                           131
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  6(5P13.1) MUTATED   29  3  5  5
  AMP PEAK  6(5P13.1) WILD-TYPE 94  4  7 20
D6V10, multiclass
    clus
vv   AMP PEAK  6(5P13.1) MUTATED AMP PEAK  6(5P13.1) WILD-TYPE
  R0                          29                            94
  R1                           3                             4
  R2                           5                             7
  RX                           5                            20
D6V11, continuous

Clustering(7) Variable = Amp Peak  7(6p21.1) mutation analysis
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  7(6P21.1) MUTATED   31  0
  AMP PEAK  7(6P21.1) WILD-TYPE 91 18
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                           31                           109 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                            0                            18 
$`AMP PEAK  7(6P21.1) MUTATED`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 
        1.35         1.35         0.62         1.48         1.25         1.05 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-A4J8 TCGA-CD-5799 TCGA-CG-4436 
        0.69         4.54         0.95         0.23         0.69        52.96 
TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5727 
       54.05        19.07        12.03        18.94         1.02        31.04 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-6518 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        4.01        55.04         9.80         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-FP-7735 TCGA-FP-7829 
        3.65         4.04         2.93         4.27         0.39         0.20 
TCGA-FP-8631 
        0.56 

$`AMP PEAK  7(6P21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        1.12         0.76         0.66         0.26         1.22         0.46 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        0.13         0.82         0.16         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.39         0.79         0.72         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.13         0.10         0.72         0.82         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.30         0.07        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        1.02         8.05         4.01        14.01        29.98        47.05 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 
        0.95        70.06        12.03        15.02        28.96        65.10 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 
       21.07         7.99         8.65         3.58         4.54        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6817 
        9.63         8.19         6.90         0.69         5.95         4.70 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 
        0.62         7.79         6.54         2.01        72.23         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        3.58         1.02        59.05        26.43         6.87         3.55 
TCGA-IP-7968 
        2.53 

  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                         0.20                          0.07 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                        55.04                         72.23 
  AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE 
                         2.93                          1.02 
[1] "0.2 - 55.0 (2.9)" "0.1 - 72.2 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK  7(6P21.1) MUTATED"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK  7(6P21.1) MUTATED" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK  7(6P21.1) WILD-TYPE"   "AMP PEAK  7(6P21.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  7(6P21.1) WILD-TYPE" "AMP PEAK  7(6P21.1) WILD-TYPE" 
[1] "hr="   "3e+08"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P21.1) MUTATED     16   31
  AMP PEAK  7(6P21.1) WILD-TYPE   54   76
        clus
vv       AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  FEMALE                          16                            54
  MALE                            31                            76
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  7(6P21.1) MUTATED                                       2
  AMP PEAK  7(6P21.1) WILD-TYPE                                    23
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  7(6P21.1) MUTATED                                                       25
  AMP PEAK  7(6P21.1) WILD-TYPE                                                     62
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  7(6P21.1) MUTATED                                           0
  AMP PEAK  7(6P21.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  7(6P21.1) MUTATED                                                   3
  AMP PEAK  7(6P21.1) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  7(6P21.1) MUTATED                                                    1
  AMP PEAK  7(6P21.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  7(6P21.1) MUTATED                                                  5
  AMP PEAK  7(6P21.1) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  7(6P21.1) MUTATED                                                                       11
  AMP PEAK  7(6P21.1) WILD-TYPE                                                                     25
D7V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  7(6P21.1) MUTATED    1 18 19  3
  AMP PEAK  7(6P21.1) WILD-TYPE  5 36 45 40
D7V5, multiclass
    clus
vv   AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  T1                           1                             5
  T2                          18                            36
  T3                          19                            45
  T4                           3                            40
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  7(6P21.1) MUTATED   15 19  6  4
  AMP PEAK  7(6P21.1) WILD-TYPE 41 42 23 16
D7V6, multiclass
    clus
vv   AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  N0                          15                            41
  N1                          19                            42
  N2                           6                            23
  N3                           4                            16
                               vv
clus                             M0  M1  MX
  AMP PEAK  7(6P21.1) MUTATED    42   1   4
  AMP PEAK  7(6P21.1) WILD-TYPE 104  17   9
D7V7, multiclass
    clus
vv   AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  M0                          42                           104
  M1                           1                            17
  MX                           4                             9
                               vv
clus                             I II III IV
  AMP PEAK  7(6P21.1) MUTATED    8 16  10  7
  AMP PEAK  7(6P21.1) WILD-TYPE 18 32  48 22
D7V8, multiclass
     clus
vv    AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  I                             8                            18
  II                           16                            32
  III                          10                            48
  IV                            7                            22
D7V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(6P21.1) MUTATED      3   44
  AMP PEAK  7(6P21.1) WILD-TYPE    2  128
     clus
vv    AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  NO                            3                             2
  YES                          44                           128
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  7(6P21.1) MUTATED   32  2  1 11
  AMP PEAK  7(6P21.1) WILD-TYPE 91  5 11 14
D7V10, multiclass
    clus
vv   AMP PEAK  7(6P21.1) MUTATED AMP PEAK  7(6P21.1) WILD-TYPE
  R0                          32                            91
  R1                           2                             5
  R2                           1                            11
  RX                          11                            14
D7V11, continuous

Clustering(8) Variable = Amp Peak  8(6q12) mutation analysis
D8V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  8(6Q12) MUTATED    20   2
  AMP PEAK  8(6Q12) WILD-TYPE 102  16
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         22                         118 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                          2                          16 
$`AMP PEAK  8(6Q12) MUTATED`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-A4J1 
        1.35         1.48         1.25         1.05         4.54         0.72 
TCGA-BR-A4J8 TCGA-CD-5799 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4466 
        0.23         0.69        52.96        54.05         4.01        18.94 
TCGA-CG-5719 TCGA-CG-5730 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6818 TCGA-D7-6820 
        1.02         4.01         6.61         4.14         4.04         2.93 
TCGA-D7-6822 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 
        4.27         0.39         0.20         1.02 

$`AMP PEAK  8(6Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        1.22         0.46         0.13         0.82         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.76         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.79         0.53         0.43         0.13         0.10         0.72 
TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.36         0.49         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 
        3.02        27.02        15.95         1.02         8.05        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
       29.98        47.05        19.07        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
       12.03        15.02        28.96        31.04        65.10        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 
        1.68         3.65         4.70         0.62         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 
        2.01        72.23         3.02         3.58        59.05         0.56 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                       0.20                        0.07 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                      54.05                       72.23 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                      2.205                       1.150 
[1] "0.2 - 54.0 (2.2)" "0.1 - 72.2 (1.1)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-7829                  TCGA-FP-7916 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-7829                  TCGA-FP-7916 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "AMP PEAK  8(6Q12) MUTATED"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-7829                  TCGA-FP-7916 
  "AMP PEAK  8(6Q12) MUTATED" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  8(6Q12) WILD-TYPE"   "AMP PEAK  8(6Q12) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  8(6Q12) WILD-TYPE" "AMP PEAK  8(6Q12) WILD-TYPE" 
[1] "hr=" "1.2"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED     14   22
  AMP PEAK  8(6Q12) WILD-TYPE   56   85
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  FEMALE                        14                          56
  MALE                          22                          85
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  8(6Q12) MUTATED                                       2
  AMP PEAK  8(6Q12) WILD-TYPE                                    23
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  8(6Q12) MUTATED                                                       20
  AMP PEAK  8(6Q12) WILD-TYPE                                                     67
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  8(6Q12) MUTATED                                           0
  AMP PEAK  8(6Q12) WILD-TYPE                                         1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  8(6Q12) MUTATED                                                   1
  AMP PEAK  8(6Q12) WILD-TYPE                                                 9
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  8(6Q12) MUTATED                                                    1
  AMP PEAK  8(6Q12) WILD-TYPE                                                  2
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  8(6Q12) MUTATED                                                  3
  AMP PEAK  8(6Q12) WILD-TYPE                                                7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  8(6Q12) MUTATED                                                                        9
  AMP PEAK  8(6Q12) WILD-TYPE                                                                     27
D8V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK  8(6Q12) MUTATED    1 10 17  5
  AMP PEAK  8(6Q12) WILD-TYPE  5 44 47 38
D8V5, multiclass
    clus
vv   AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  T1                         1                           5
  T2                        10                          44
  T3                        17                          47
  T4                         5                          38
                             vv
clus                          N0 N1 N2 N3
  AMP PEAK  8(6Q12) MUTATED   11 14  4  4
  AMP PEAK  8(6Q12) WILD-TYPE 45 47 25 16
D8V6, multiclass
    clus
vv   AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  N0                        11                          45
  N1                        14                          47
  N2                         4                          25
  N3                         4                          16
                             vv
clus                           M0  M1  MX
  AMP PEAK  8(6Q12) MUTATED    29   3   4
  AMP PEAK  8(6Q12) WILD-TYPE 117  15   9
D8V7, multiclass
    clus
vv   AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  M0                        29                         117
  M1                         3                          15
  MX                         4                           9
                             vv
clus                           I II III IV
  AMP PEAK  8(6Q12) MUTATED    6 10  10  6
  AMP PEAK  8(6Q12) WILD-TYPE 20 38  48 23
D8V8, multiclass
     clus
vv    AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  I                           6                          20
  II                         10                          38
  III                        10                          48
  IV                          6                          23
D8V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q12) MUTATED      2   34
  AMP PEAK  8(6Q12) WILD-TYPE    3  138
     clus
vv    AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  NO                          2                           3
  YES                        34                         138
                             vv
clus                           R0  R1  R2  RX
  AMP PEAK  8(6Q12) MUTATED    23   1   2   9
  AMP PEAK  8(6Q12) WILD-TYPE 100   6  10  16
D8V10, multiclass
    clus
vv   AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  R0                        23                         100
  R1                         1                           6
  R2                         2                          10
  RX                         9                          16
D8V11, continuous

Clustering(9) Variable = Amp Peak  9(6q21) mutation analysis
D9V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  9(6Q21) MUTATED    18   3
  AMP PEAK  9(6Q21) WILD-TYPE 104  15
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                         21                         119 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                          3                          15 
$`AMP PEAK  9(6Q21) MUTATED`
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-A4J1 TCGA-CD-5799 
        1.48         1.25         1.05         0.69         0.72         0.69 
TCGA-CD-5800 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 
        0.36         3.02        52.96        54.05         4.01        47.05 
TCGA-CG-4466 TCGA-CG-5724 TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 
       18.94        12.03         8.19         4.14         1.68         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-IN-7808 
        2.93         4.27         3.55 

$`AMP PEAK  9(6Q21) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 
        0.26         1.22         0.46         0.13         0.82         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        4.54         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.79         0.79         0.53         0.43         0.13         0.23 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.10         0.72         0.82         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 
       20.02        27.02        15.95         1.02         8.05        14.01 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
       15.65         9.63         6.90         0.69         5.95         6.61 
TCGA-D7-6815 TCGA-D7-6817 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        3.65         4.70         0.62         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
       72.23         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
       59.05         0.56        26.43         6.87         2.53 

  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                       0.36                        0.07 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                      54.05                       72.23 
  AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE 
                       3.55                        1.02 
[1] "0.4 - 54.0 (3.5)" "0.1 - 72.2 (1.0)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  9(6Q21) WILD-TYPE"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "AMP PEAK  9(6Q21) MUTATED"   "AMP PEAK  9(6Q21) MUTATED" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  9(6Q21) WILD-TYPE" "AMP PEAK  9(6Q21) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
  "AMP PEAK  9(6Q21) MUTATED" "AMP PEAK  9(6Q21) WILD-TYPE" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED     12   18
  AMP PEAK  9(6Q21) WILD-TYPE   58   89
        clus
vv       AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  FEMALE                        12                          58
  MALE                          18                          89
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  9(6Q21) MUTATED                                       4
  AMP PEAK  9(6Q21) WILD-TYPE                                    21
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  9(6Q21) MUTATED                                                       14
  AMP PEAK  9(6Q21) WILD-TYPE                                                     73
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  9(6Q21) MUTATED                                           0
  AMP PEAK  9(6Q21) WILD-TYPE                                         1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  9(6Q21) MUTATED                                                   0
  AMP PEAK  9(6Q21) WILD-TYPE                                                10
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  9(6Q21) MUTATED                                                    2
  AMP PEAK  9(6Q21) WILD-TYPE                                                  1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  9(6Q21) MUTATED                                                  3
  AMP PEAK  9(6Q21) WILD-TYPE                                                7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  9(6Q21) MUTATED                                                                        6
  AMP PEAK  9(6Q21) WILD-TYPE                                                                     30
D9V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK  9(6Q21) MUTATED    0 10 12  5
  AMP PEAK  9(6Q21) WILD-TYPE  6 44 52 38
D9V5, multiclass
    clus
vv   AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  T1                         0                           6
  T2                        10                          44
  T3                        12                          52
  T4                         5                          38
                             vv
clus                          N0 N1 N2 N3
  AMP PEAK  9(6Q21) MUTATED    8 12  4  4
  AMP PEAK  9(6Q21) WILD-TYPE 48 49 25 16
D9V6, multiclass
    clus
vv   AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  N0                         8                          48
  N1                        12                          49
  N2                         4                          25
  N3                         4                          16
                             vv
clus                           M0  M1  MX
  AMP PEAK  9(6Q21) MUTATED    25   4   1
  AMP PEAK  9(6Q21) WILD-TYPE 121  14  12
D9V7, multiclass
    clus
vv   AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  M0                        25                         121
  M1                         4                          14
  MX                         1                          12
                             vv
clus                           I II III IV
  AMP PEAK  9(6Q21) MUTATED    4  8   8  7
  AMP PEAK  9(6Q21) WILD-TYPE 22 40  50 22
D9V8, multiclass
     clus
vv    AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  I                           4                          22
  II                          8                          40
  III                         8                          50
  IV                          7                          22
D9V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  9(6Q21) MUTATED      2   28
  AMP PEAK  9(6Q21) WILD-TYPE    3  144
     clus
vv    AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  NO                          2                           3
  YES                        28                         144
                             vv
clus                           R0  R1  R2  RX
  AMP PEAK  9(6Q21) MUTATED    16   1   3   7
  AMP PEAK  9(6Q21) WILD-TYPE 107   6   9  18
D9V10, multiclass
    clus
vv   AMP PEAK  9(6Q21) MUTATED AMP PEAK  9(6Q21) WILD-TYPE
  R0                        16                         107
  R1                         1                           6
  R2                         3                           9
  RX                         7                          18
D9V11, continuous

Clustering(10) Variable = Amp Peak 10(7p22.3) mutation analysis
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(7P22.3) MUTATED   52 11
  AMP PEAK 10(7P22.3) WILD-TYPE 70  7
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                           63                            77 
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                           11                             7 
$`AMP PEAK 10(7P22.3) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.10         1.35         0.62         0.62         1.71         2.17 
TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 
        1.12         1.48         0.46         1.25         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7901 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J8 
        0.69         0.95         0.39         0.72         0.53         0.23 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.69         0.49        20.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4449 TCGA-CG-4460 
        8.05        54.05         4.01        14.01        19.07        21.99 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5724 
       18.94         7.07        12.00         1.02         1.02        12.03 
TCGA-CG-5726 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 
       28.96         4.01        21.07         7.99         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 
        9.80         9.63         8.19         6.61         1.68         3.65 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
       72.23         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
        0.56        26.43         3.55 

$`AMP PEAK 10(7P22.3) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        0.99         1.22         0.66         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 
        1.22         0.13         0.16         4.54         0.99         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 
        0.92         0.79         0.79         0.43         0.13         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.72         0.82         0.36         0.30         0.07         3.02 
TCGA-CG-4306 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
        1.02        29.98        47.05        12.03         1.02         8.98 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
        0.95        70.06        15.02        31.04        65.10        55.04 
TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 
        8.65        15.65         6.90         0.69         5.95         4.14 
TCGA-D7-6817 TCGA-EQ-5647 TCGA-FP-8209 TCGA-IN-7806 TCGA-IP-7968 
        4.70         0.62        59.05         6.87         2.53 

  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE 
                         3.58                          0.99 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 10(7P22.3) WILD-TYPE" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK 10(7P22.3) MUTATED"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 10(7P22.3) WILD-TYPE"   "AMP PEAK 10(7P22.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 10(7P22.3) MUTATED" "AMP PEAK 10(7P22.3) WILD-TYPE" 
[1] "hr=" "1.3"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P22.3) MUTATED     26   57
  AMP PEAK 10(7P22.3) WILD-TYPE   44   50
        clus
vv       AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  FEMALE                          26                            44
  MALE                            57                            50
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 10(7P22.3) MUTATED                                      10
  AMP PEAK 10(7P22.3) WILD-TYPE                                    15
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 10(7P22.3) MUTATED                                                       40
  AMP PEAK 10(7P22.3) WILD-TYPE                                                     47
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 10(7P22.3) MUTATED                                           1
  AMP PEAK 10(7P22.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 10(7P22.3) MUTATED                                                   3
  AMP PEAK 10(7P22.3) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 10(7P22.3) MUTATED                                                    1
  AMP PEAK 10(7P22.3) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 10(7P22.3) MUTATED                                                  7
  AMP PEAK 10(7P22.3) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 10(7P22.3) MUTATED                                                                       19
  AMP PEAK 10(7P22.3) WILD-TYPE                                                                     17
D10V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 10(7P22.3) MUTATED    4 26 32 14
  AMP PEAK 10(7P22.3) WILD-TYPE  2 28 32 29
D10V5, multiclass
    clus
vv   AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  T1                           4                             2
  T2                          26                            28
  T3                          32                            32
  T4                          14                            29
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 10(7P22.3) MUTATED   23 29 15 10
  AMP PEAK 10(7P22.3) WILD-TYPE 33 32 14 10
D10V6, multiclass
    clus
vv   AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  N0                          23                            33
  N1                          29                            32
  N2                          15                            14
  N3                          10                            10
                               vv
clus                            M0 M1 MX
  AMP PEAK 10(7P22.3) MUTATED   66  6 11
  AMP PEAK 10(7P22.3) WILD-TYPE 80 12  2
D10V7, multiclass
    clus
vv   AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  M0                          66                            80
  M1                           6                            12
  MX                          11                             2
                               vv
clus                             I II III IV
  AMP PEAK 10(7P22.3) MUTATED   15 20  26 13
  AMP PEAK 10(7P22.3) WILD-TYPE 11 28  32 16
D10V8, multiclass
     clus
vv    AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  I                            15                            11
  II                           20                            28
  III                          26                            32
  IV                           13                            16
D10V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P22.3) MUTATED      2   81
  AMP PEAK 10(7P22.3) WILD-TYPE    3   91
     clus
vv    AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  NO                            2                             3
  YES                          81                            91
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 10(7P22.3) MUTATED   57  4  5 12
  AMP PEAK 10(7P22.3) WILD-TYPE 66  3  7 13
D10V10, multiclass
    clus
vv   AMP PEAK 10(7P22.3) MUTATED AMP PEAK 10(7P22.3) WILD-TYPE
  R0                          57                            66
  R1                           4                             3
  R2                           5                             7
  RX                          12                            13
D10V11, continuous

Clustering(11) Variable = Amp Peak 11(7p11.2) mutation analysis
D11V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 11(7P11.2) MUTATED   47 10
  AMP PEAK 11(7P11.2) WILD-TYPE 75  8
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                           57                            83 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                           10                             8 
$`AMP PEAK 11(7P11.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.10         1.35         0.62         0.62         1.71         2.17 
TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7717 
        1.12         1.48         0.46         1.25         1.05         0.69 
TCGA-BR-7901 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J8 
        0.95         0.39         0.72         0.79         0.53         0.23 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.69         0.49        20.02        27.02        15.95        52.96 
TCGA-CG-4440 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        4.01        21.99        18.94         7.07        12.00         1.02 
TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5733 TCGA-CG-5734 
        1.02        12.03        28.96        31.04        21.07         7.99 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6526 
        3.58         4.54         9.80         9.63         8.19         6.61 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        1.68         3.65         2.93         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 
        2.01        72.23         0.39         0.20         3.02         1.02 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
        0.56        26.43         3.55 

$`AMP PEAK 11(7P11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        0.99         1.22         0.66         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.22         0.13         0.82         0.16         4.54         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 
        0.59         0.92         0.79         0.43         0.13         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.72         0.82         0.36         0.30         0.07         3.02 
TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        1.02         8.05        54.05        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4477 TCGA-CG-5716 
       19.07        12.03         1.02         8.98         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-6519 
       15.02        65.10         4.01        55.04         8.65        15.65 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 
        6.90         0.69         5.95         4.14         4.70         4.04 
TCGA-EQ-5647 TCGA-FP-7998 TCGA-FP-8209 TCGA-IN-7806 TCGA-IP-7968 
        0.62         3.58        59.05         6.87         2.53 

  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                         2.93                          1.02 
[1] "0.1 - 72.2 (2.9)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 11(7P11.2) WILD-TYPE" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 11(7P11.2) MUTATED"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 11(7P11.2) WILD-TYPE"   "AMP PEAK 11(7P11.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 11(7P11.2) MUTATED" "AMP PEAK 11(7P11.2) WILD-TYPE" 
[1] "hr=" "1.2"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7P11.2) MUTATED     24   52
  AMP PEAK 11(7P11.2) WILD-TYPE   46   55
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  FEMALE                          24                            46
  MALE                            52                            55
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 11(7P11.2) MUTATED                                       9
  AMP PEAK 11(7P11.2) WILD-TYPE                                    16
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 11(7P11.2) MUTATED                                                       38
  AMP PEAK 11(7P11.2) WILD-TYPE                                                     49
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 11(7P11.2) MUTATED                                           1
  AMP PEAK 11(7P11.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 11(7P11.2) MUTATED                                                   2
  AMP PEAK 11(7P11.2) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 11(7P11.2) MUTATED                                                    1
  AMP PEAK 11(7P11.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 11(7P11.2) MUTATED                                                  7
  AMP PEAK 11(7P11.2) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 11(7P11.2) MUTATED                                                                       16
  AMP PEAK 11(7P11.2) WILD-TYPE                                                                     20
D11V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 11(7P11.2) MUTATED    4 21 32 12
  AMP PEAK 11(7P11.2) WILD-TYPE  2 33 32 31
D11V5, multiclass
    clus
vv   AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  T1                           4                             2
  T2                          21                            33
  T3                          32                            32
  T4                          12                            31
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 11(7P11.2) MUTATED   25 25 13  8
  AMP PEAK 11(7P11.2) WILD-TYPE 31 36 16 12
D11V6, multiclass
    clus
vv   AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  N0                          25                            31
  N1                          25                            36
  N2                          13                            16
  N3                           8                            12
                               vv
clus                            M0 M1 MX
  AMP PEAK 11(7P11.2) MUTATED   62  5  9
  AMP PEAK 11(7P11.2) WILD-TYPE 84 13  4
D11V7, multiclass
    clus
vv   AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  M0                          62                            84
  M1                           5                            13
  MX                           9                             4
                               vv
clus                             I II III IV
  AMP PEAK 11(7P11.2) MUTATED   15 20  24  9
  AMP PEAK 11(7P11.2) WILD-TYPE 11 28  34 20
D11V8, multiclass
     clus
vv    AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  I                            15                            11
  II                           20                            28
  III                          24                            34
  IV                            9                            20
D11V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7P11.2) MUTATED      1   75
  AMP PEAK 11(7P11.2) WILD-TYPE    4   97
     clus
vv    AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  NO                            1                             4
  YES                          75                            97
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 11(7P11.2) MUTATED   52  4  4 11
  AMP PEAK 11(7P11.2) WILD-TYPE 71  3  8 14
D11V10, multiclass
    clus
vv   AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  R0                          52                            71
  R1                           4                             3
  R2                           4                             8
  RX                          11                            14
D11V11, continuous

Clustering(12) Variable = Amp Peak 12(7q21.2) mutation analysis
D12V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 12(7Q21.2) MUTATED   51 10
  AMP PEAK 12(7Q21.2) WILD-TYPE 71  8
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                           61                            79 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                           10                             8 
$`AMP PEAK 12(7Q21.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
        0.10         1.35         0.82         0.62         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 
        2.17         1.12         1.48         0.46         1.25         1.05 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.39         0.72         0.79         0.53         0.23         0.72 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.69         0.49        20.02         3.02        27.02        15.95 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4466 
       52.96        54.05         4.01        14.01        12.03        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5725 
        7.07        12.00         1.02         1.02        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5733 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       28.96        31.04        21.07         3.58         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        9.63         8.19         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        3.65         4.70         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 
        0.39         0.20         3.58         1.02         0.56        26.43 
TCGA-IN-7808 
        3.55 

$`AMP PEAK 12(7Q21.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6707 
        5.62         0.95         1.41         1.35         0.85         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        1.22         0.66         0.76         0.66         0.26         1.22 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        0.13         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.20         0.59         0.92         0.79         0.43         0.13 
TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4306 
        0.10         0.82         0.36         0.30         0.07         1.02 
TCGA-CG-4437 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 
        8.05        29.98        47.05        19.07        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        8.98         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
        5.98         0.95        70.06        65.10         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 
        7.99         8.65        15.65         6.90         0.69         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7916 TCGA-FP-8209 TCGA-IN-7806 
        2.93         4.27         0.62         3.02        59.05         6.87 
TCGA-IP-7968 
        2.53 

  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE 
                         3.58                          0.99 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 12(7Q21.2) WILD-TYPE" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
  "AMP PEAK 12(7Q21.2) MUTATED"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 12(7Q21.2) WILD-TYPE"   "AMP PEAK 12(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 12(7Q21.2) MUTATED" "AMP PEAK 12(7Q21.2) WILD-TYPE" 
[1] "hr=" "1"  
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(7Q21.2) MUTATED     24   55
  AMP PEAK 12(7Q21.2) WILD-TYPE   46   52
        clus
vv       AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  FEMALE                          24                            46
  MALE                            55                            52
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 12(7Q21.2) MUTATED                                      10
  AMP PEAK 12(7Q21.2) WILD-TYPE                                    15
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 12(7Q21.2) MUTATED                                                       39
  AMP PEAK 12(7Q21.2) WILD-TYPE                                                     48
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 12(7Q21.2) MUTATED                                           1
  AMP PEAK 12(7Q21.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 12(7Q21.2) MUTATED                                                   3
  AMP PEAK 12(7Q21.2) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 12(7Q21.2) MUTATED                                                    2
  AMP PEAK 12(7Q21.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 12(7Q21.2) MUTATED                                                  6
  AMP PEAK 12(7Q21.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 12(7Q21.2) MUTATED                                                                       16
  AMP PEAK 12(7Q21.2) WILD-TYPE                                                                     20
D12V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 12(7Q21.2) MUTATED    4 25 30 13
  AMP PEAK 12(7Q21.2) WILD-TYPE  2 29 34 30
D12V5, multiclass
    clus
vv   AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  T1                           4                             2
  T2                          25                            29
  T3                          30                            34
  T4                          13                            30
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 12(7Q21.2) MUTATED   25 22 17  9
  AMP PEAK 12(7Q21.2) WILD-TYPE 31 39 12 11
D12V6, multiclass
    clus
vv   AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  N0                          25                            31
  N1                          22                            39
  N2                          17                            12
  N3                           9                            11
                               vv
clus                            M0 M1 MX
  AMP PEAK 12(7Q21.2) MUTATED   64  5 10
  AMP PEAK 12(7Q21.2) WILD-TYPE 82 13  3
D12V7, multiclass
    clus
vv   AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  M0                          64                            82
  M1                           5                            13
  MX                          10                             3
                               vv
clus                             I II III IV
  AMP PEAK 12(7Q21.2) MUTATED   15 21  25  9
  AMP PEAK 12(7Q21.2) WILD-TYPE 11 27  33 20
D12V8, multiclass
     clus
vv    AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  I                            15                            11
  II                           21                            27
  III                          25                            33
  IV                            9                            20
D12V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(7Q21.2) MUTATED      2   77
  AMP PEAK 12(7Q21.2) WILD-TYPE    3   95
     clus
vv    AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  NO                            2                             3
  YES                          77                            95
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 12(7Q21.2) MUTATED   57  3  4 11
  AMP PEAK 12(7Q21.2) WILD-TYPE 66  4  8 14
D12V10, multiclass
    clus
vv   AMP PEAK 12(7Q21.2) MUTATED AMP PEAK 12(7Q21.2) WILD-TYPE
  R0                          57                            66
  R1                           3                             4
  R2                           4                             8
  RX                          11                            14
D12V11, continuous

Clustering(13) Variable = Amp Peak 13(8p23.1) mutation analysis
D13V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 13(8P23.1) MUTATED   37  6
  AMP PEAK 13(8P23.1) WILD-TYPE 85 12
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                           43                            97 
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                            6                            12 
$`AMP PEAK 13(8P23.1) MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6705 
        5.62         0.95         1.41         1.35         1.35         1.71 
TCGA-BR-6707 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7704 TCGA-BR-7707 
        0.99         0.76         0.66         0.26         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7957 TCGA-BR-A4IU TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J9 
        0.69         0.69         0.59         0.79         0.43         0.10 
TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4305 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 
        0.69         0.07        15.95        14.01        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5716 TCGA-CG-5722 
        1.02        18.94         7.07        12.00         1.02         0.95 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6524 
       28.96        65.10        21.07         3.58         4.54         0.69 
TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-FP-7829 
        4.14         4.70         4.04         2.93         4.27         0.20 
TCGA-HJ-7597 
       26.43 

$`AMP PEAK 13(8P23.1) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 
        0.10         0.85         0.82         0.62         0.62         2.17 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.22         0.66         1.12         1.22         1.48         0.46 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        1.05         0.82         0.16         4.54         0.99         0.95 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IV 
        1.18         1.55         1.48         0.76         0.20         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.39         0.79         0.72         0.53         0.13         0.23 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 
        0.72         0.82         0.36         0.49         0.30        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4465 TCGA-CG-4474 
        4.01        29.98        47.05        19.07         8.98         1.02 
TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       70.06        12.03        15.02        31.04         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        7.99         8.65         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-EQ-5647 
        6.90         5.95         6.61         1.68         3.65         0.62 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 
        7.79         6.54         2.01        72.23         0.39         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-IN-7806 TCGA-IN-7808 
        3.58         1.02        59.05         0.56         6.87         3.55 
TCGA-IP-7968 
        2.53 

  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                         0.07                          0.10 
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                        65.10                         72.23 
  AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE 
                         1.35                          1.18 
[1] "0.1 - 65.1 (1.4)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 13(8P23.1) WILD-TYPE"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 13(8P23.1) MUTATED"   "AMP PEAK 13(8P23.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(8P23.1) MUTATED" "AMP PEAK 13(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 13(8P23.1) WILD-TYPE" "AMP PEAK 13(8P23.1) WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(8P23.1) MUTATED     29   34
  AMP PEAK 13(8P23.1) WILD-TYPE   41   73
        clus
vv       AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  FEMALE                          29                            41
  MALE                            34                            73
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 13(8P23.1) MUTATED                                       7
  AMP PEAK 13(8P23.1) WILD-TYPE                                    18
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 13(8P23.1) MUTATED                                                       30
  AMP PEAK 13(8P23.1) WILD-TYPE                                                     57
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 13(8P23.1) MUTATED                                           1
  AMP PEAK 13(8P23.1) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 13(8P23.1) MUTATED                                                   5
  AMP PEAK 13(8P23.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 13(8P23.1) MUTATED                                                    1
  AMP PEAK 13(8P23.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 13(8P23.1) MUTATED                                                  4
  AMP PEAK 13(8P23.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 13(8P23.1) MUTATED                                                                       13
  AMP PEAK 13(8P23.1) WILD-TYPE                                                                     23
D13V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 13(8P23.1) MUTATED    3 21 22 11
  AMP PEAK 13(8P23.1) WILD-TYPE  3 33 42 32
D13V5, multiclass
    clus
vv   AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  T1                           3                             3
  T2                          21                            33
  T3                          22                            42
  T4                          11                            32
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 13(8P23.1) MUTATED   20 22  9  5
  AMP PEAK 13(8P23.1) WILD-TYPE 36 39 20 15
D13V6, multiclass
    clus
vv   AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  N0                          20                            36
  N1                          22                            39
  N2                           9                            20
  N3                           5                            15
                               vv
clus                            M0 M1 MX
  AMP PEAK 13(8P23.1) MUTATED   55  5  3
  AMP PEAK 13(8P23.1) WILD-TYPE 91 13 10
D13V7, multiclass
    clus
vv   AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  M0                          55                            91
  M1                           5                            13
  MX                           3                            10
                               vv
clus                             I II III IV
  AMP PEAK 13(8P23.1) MUTATED    9 20  15 10
  AMP PEAK 13(8P23.1) WILD-TYPE 17 28  43 19
D13V8, multiclass
     clus
vv    AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  I                             9                            17
  II                           20                            28
  III                          15                            43
  IV                           10                            19
D13V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(8P23.1) MUTATED      4   59
  AMP PEAK 13(8P23.1) WILD-TYPE    1  113
     clus
vv    AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  NO                            4                             1
  YES                          59                           113
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 13(8P23.1) MUTATED   40  3  4 14
  AMP PEAK 13(8P23.1) WILD-TYPE 83  4  8 11
D13V10, multiclass
    clus
vv   AMP PEAK 13(8P23.1) MUTATED AMP PEAK 13(8P23.1) WILD-TYPE
  R0                          40                            83
  R1                           3                             4
  R2                           4                             8
  RX                          14                            11
D13V11, continuous

Clustering(14) Variable = Amp Peak 14(8q24.21) mutation analysis
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(8Q24.21) MUTATED   67 13
  AMP PEAK 14(8Q24.21) WILD-TYPE 55  5
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                            80                             60 
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                            13                              5 
$`AMP PEAK 14(8Q24.21) MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6565 TCGA-BR-6705 
        5.62         0.95         1.41         1.35         0.62         1.71 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        0.99         1.22         1.12         0.76         0.66         0.26 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-A4IU TCGA-BR-A4J1 TCGA-BR-A4J2 
        4.54         0.95         0.69         0.59         0.72         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.43         0.10         0.36         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
        3.02        15.95        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5718 
        1.02        18.94         7.07        12.00         6.94         1.02 
TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
        0.95        12.03        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04        21.07         7.99         3.58         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 
        9.63         0.69         5.95         6.61         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 
       72.23         0.39         0.20         1.02         0.56        26.43 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

$`AMP PEAK 14(8Q24.21) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 
        0.10         1.35         0.85         0.82         0.62         2.17 
TCGA-BR-6710 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7958 
        0.66         1.22         0.46         0.16         0.99         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IV TCGA-BR-A4IY 
        1.55         1.48         0.76         0.20         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5798 
        0.79         0.53         0.13         0.23         0.72         0.82 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4465 TCGA-CG-4474 
        0.69         0.49        27.02         1.02         8.98         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 
        1.02         1.02         1.02         0.99         5.98        70.06 
TCGA-CG-5725 TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6527 
       15.02         8.65        15.65         8.19         6.90         4.14 
TCGA-EQ-8122 TCGA-F1-6874 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-IN-7806 
        7.79         2.01         3.02         3.58        59.05         6.87 

  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                          0.07                           0.10 
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE 
                         3.285                          0.990 
[1] "0.1 - 72.2 (3.3)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 14(8Q24.21) WILD-TYPE" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 14(8Q24.21) WILD-TYPE"   "AMP PEAK 14(8Q24.21) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 14(8Q24.21) MUTATED" "AMP PEAK 14(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 14(8Q24.21) MUTATED"   "AMP PEAK 14(8Q24.21) MUTATED" 
[1] "hr=" "1.1"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(8Q24.21) MUTATED     40   69
  AMP PEAK 14(8Q24.21) WILD-TYPE   30   38
        clus
vv       AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  FEMALE                           40                             30
  MALE                             69                             38
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 14(8Q24.21) MUTATED                                      10
  AMP PEAK 14(8Q24.21) WILD-TYPE                                    15
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 14(8Q24.21) MUTATED                                                       56
  AMP PEAK 14(8Q24.21) WILD-TYPE                                                     31
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 14(8Q24.21) MUTATED                                           1
  AMP PEAK 14(8Q24.21) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 14(8Q24.21) MUTATED                                                   6
  AMP PEAK 14(8Q24.21) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 14(8Q24.21) MUTATED                                                    1
  AMP PEAK 14(8Q24.21) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 14(8Q24.21) MUTATED                                                  8
  AMP PEAK 14(8Q24.21) WILD-TYPE                                                2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 14(8Q24.21) MUTATED                                                                       23
  AMP PEAK 14(8Q24.21) WILD-TYPE                                                                     13
D14V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 14(8Q24.21) MUTATED    5 36 44 15
  AMP PEAK 14(8Q24.21) WILD-TYPE  1 18 20 28
D14V5, multiclass
    clus
vv   AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  T1                            5                              1
  T2                           36                             18
  T3                           44                             20
  T4                           15                             28
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 14(8Q24.21) MUTATED   34 36 19 10
  AMP PEAK 14(8Q24.21) WILD-TYPE 22 25 10 10
D14V6, multiclass
    clus
vv   AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  N0                           34                             22
  N1                           36                             25
  N2                           19                             10
  N3                           10                             10
                                vv
clus                             M0 M1 MX
  AMP PEAK 14(8Q24.21) MUTATED   89 10 10
  AMP PEAK 14(8Q24.21) WILD-TYPE 57  8  3
D14V7, multiclass
    clus
vv   AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  M0                           89                             57
  M1                           10                              8
  MX                           10                              3
                                vv
clus                              I II III IV
  AMP PEAK 14(8Q24.21) MUTATED   16 32  29 18
  AMP PEAK 14(8Q24.21) WILD-TYPE 10 16  29 11
D14V8, multiclass
     clus
vv    AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  I                             16                             10
  II                            32                             16
  III                           29                             29
  IV                            18                             11
D14V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(8Q24.21) MUTATED      3  106
  AMP PEAK 14(8Q24.21) WILD-TYPE    2   66
     clus
vv    AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  NO                             3                              2
  YES                          106                             66
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 14(8Q24.21) MUTATED   70  6  8 20
  AMP PEAK 14(8Q24.21) WILD-TYPE 53  1  4  5
D14V10, multiclass
    clus
vv   AMP PEAK 14(8Q24.21) MUTATED AMP PEAK 14(8Q24.21) WILD-TYPE
  R0                           70                             53
  R1                            6                              1
  R2                            8                              4
  RX                           20                              5
D14V11, continuous

Clustering(15) Variable = Amp Peak 15(9p24.1) mutation analysis
D15V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 15(9P24.1) MUTATED    14   3
  AMP PEAK 15(9P24.1) WILD-TYPE 108  15
  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                           17                           123 
  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                            3                            15 
$`AMP PEAK 15(9P24.1) MUTATED`
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-7707 TCGA-BR-A4IY TCGA-BR-A4J4 
        2.17         0.99         1.22         0.13         0.39         0.53 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4460 TCGA-CG-4477 
        0.82         0.49        52.96         8.05        21.99         1.02 
TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 
        1.68         4.04         4.27         0.62        72.23 

$`AMP PEAK 15(9P24.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6710 
        0.85         0.82         0.62         0.62         1.71         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        0.46         1.25         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        4.54         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        1.48         0.76         0.20         0.59         0.92         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.72         0.79         0.43         0.13         0.23         0.10 
TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.72         0.69         0.36         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4440 
        3.02        27.02        15.95         1.02        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 
       14.01        29.98        47.05        19.07        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
        8.98        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 
        0.69         5.95         6.61         4.14         3.65         4.70 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        2.93         7.79         6.54         2.01         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 
        3.02         3.58         1.02        59.05         0.56        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                         0.13                          0.07 
  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE 
                         1.22                          1.25 
[1] "0.1 - 72.2 (1.2)" "0.1 - 70.1 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 15(9P24.1) MUTATED"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 15(9P24.1) MUTATED"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 15(9P24.1) MUTATED"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 15(9P24.1) MUTATED"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 15(9P24.1) MUTATED"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 15(9P24.1) MUTATED"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 15(9P24.1) WILD-TYPE"   "AMP PEAK 15(9P24.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 15(9P24.1) MUTATED" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 15(9P24.1) WILD-TYPE" "AMP PEAK 15(9P24.1) WILD-TYPE" 
[1] "hr=" "1.3"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(9P24.1) MUTATED      8   16
  AMP PEAK 15(9P24.1) WILD-TYPE   62   91
        clus
vv       AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  FEMALE                           8                            62
  MALE                            16                            91
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 15(9P24.1) MUTATED                                       1
  AMP PEAK 15(9P24.1) WILD-TYPE                                    24
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 15(9P24.1) MUTATED                                                       14
  AMP PEAK 15(9P24.1) WILD-TYPE                                                     73
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 15(9P24.1) MUTATED                                           0
  AMP PEAK 15(9P24.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 15(9P24.1) MUTATED                                                   2
  AMP PEAK 15(9P24.1) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 15(9P24.1) MUTATED                                                    0
  AMP PEAK 15(9P24.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 15(9P24.1) MUTATED                                                  2
  AMP PEAK 15(9P24.1) WILD-TYPE                                                8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 15(9P24.1) MUTATED                                                                        5
  AMP PEAK 15(9P24.1) WILD-TYPE                                                                     31
D15V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 15(9P24.1) MUTATED    2 10  7  4
  AMP PEAK 15(9P24.1) WILD-TYPE  4 44 57 39
D15V5, multiclass
    clus
vv   AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  T1                           2                             4
  T2                          10                            44
  T3                           7                            57
  T4                           4                            39
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 15(9P24.1) MUTATED   11  7  2  2
  AMP PEAK 15(9P24.1) WILD-TYPE 45 54 27 18
D15V6, multiclass
    clus
vv   AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  N0                          11                            45
  N1                           7                            54
  N2                           2                            27
  N3                           2                            18
                               vv
clus                             M0  M1  MX
  AMP PEAK 15(9P24.1) MUTATED    21   2   1
  AMP PEAK 15(9P24.1) WILD-TYPE 125  16  12
D15V7, multiclass
    clus
vv   AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  M0                          21                           125
  M1                           2                            16
  MX                           1                            12
                               vv
clus                             I II III IV
  AMP PEAK 15(9P24.1) MUTATED    8  5   5  3
  AMP PEAK 15(9P24.1) WILD-TYPE 18 43  53 26
D15V8, multiclass
     clus
vv    AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  I                             8                            18
  II                            5                            43
  III                           5                            53
  IV                            3                            26
D15V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(9P24.1) MUTATED      2   22
  AMP PEAK 15(9P24.1) WILD-TYPE    3  150
     clus
vv    AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  NO                            2                             3
  YES                          22                           150
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 15(9P24.1) MUTATED    14   2   2   4
  AMP PEAK 15(9P24.1) WILD-TYPE 109   5  10  21
D15V10, multiclass
    clus
vv   AMP PEAK 15(9P24.1) MUTATED AMP PEAK 15(9P24.1) WILD-TYPE
  R0                          14                           109
  R1                           2                             5
  R2                           2                            10
  RX                           4                            21
D15V11, continuous

Clustering(16) Variable = Amp Peak 16(9q34.3) mutation analysis
D16V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 16(9Q34.3) MUTATED   24  3
  AMP PEAK 16(9Q34.3) WILD-TYPE 98 15
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                           27                           113 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                            3                            15 
$`AMP PEAK 16(9Q34.3) MUTATED`
TCGA-BR-6564 TCGA-BR-6707 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        0.82         0.99         1.48         1.25         0.13         1.05 
TCGA-BR-7717 TCGA-BR-A4J4 TCGA-BR-A4J9 TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4301 
        0.69         0.53         0.10         0.36         0.49         3.02 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4449 TCGA-CG-4466 TCGA-CG-5718 TCGA-D7-5578 
       27.02        52.96        19.07        18.94         1.02         3.58 
TCGA-D7-5579 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 
        4.54         6.61         1.68         4.04         2.93         0.62 
TCGA-F1-6875 TCGA-HJ-7597 TCGA-IN-7808 
       72.23        26.43         3.55 

$`AMP PEAK 16(9Q34.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 
        0.85         0.62         0.62         1.71         2.17         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.46         0.82         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.59         0.92         0.39         0.79         0.72         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 
        0.43         0.13         0.23         0.72         0.82         0.69 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.30         0.07        20.02        15.95         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 
       54.05         4.01        14.01        29.98        47.05        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.95        70.06        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-8122 
        5.95         4.14         3.65         4.70         4.27         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        6.54         2.01         0.39         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-IN-7806 TCGA-IP-7968 
        1.02        59.05         0.56         6.87         2.53 

  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE 
                         1.68                          1.18 
[1] "0.1 - 72.2 (1.7)" "0.1 - 70.1 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "AMP PEAK 16(9Q34.3) MUTATED"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 16(9Q34.3) WILD-TYPE"   "AMP PEAK 16(9Q34.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 16(9Q34.3) WILD-TYPE" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 16(9Q34.3) MUTATED" "AMP PEAK 16(9Q34.3) WILD-TYPE" 
[1] "hr=" "2.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED     16   25
  AMP PEAK 16(9Q34.3) WILD-TYPE   54   82
        clus
vv       AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  FEMALE                          16                            54
  MALE                            25                            82
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 16(9Q34.3) MUTATED                                       3
  AMP PEAK 16(9Q34.3) WILD-TYPE                                    22
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 16(9Q34.3) MUTATED                                                       22
  AMP PEAK 16(9Q34.3) WILD-TYPE                                                     65
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 16(9Q34.3) MUTATED                                           1
  AMP PEAK 16(9Q34.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 16(9Q34.3) MUTATED                                                   4
  AMP PEAK 16(9Q34.3) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 16(9Q34.3) MUTATED                                                    1
  AMP PEAK 16(9Q34.3) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 16(9Q34.3) MUTATED                                                  4
  AMP PEAK 16(9Q34.3) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 16(9Q34.3) MUTATED                                                                        5
  AMP PEAK 16(9Q34.3) WILD-TYPE                                                                     31
D16V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 16(9Q34.3) MUTATED    2 13 17  5
  AMP PEAK 16(9Q34.3) WILD-TYPE  4 41 47 38
D16V5, multiclass
    clus
vv   AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  T1                           2                             4
  T2                          13                            41
  T3                          17                            47
  T4                           5                            38
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 16(9Q34.3) MUTATED   14 15  4  5
  AMP PEAK 16(9Q34.3) WILD-TYPE 42 46 25 15
D16V6, multiclass
    clus
vv   AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  N0                          14                            42
  N1                          15                            46
  N2                           4                            25
  N3                           5                            15
                               vv
clus                             M0  M1  MX
  AMP PEAK 16(9Q34.3) MUTATED    36   3   2
  AMP PEAK 16(9Q34.3) WILD-TYPE 110  15  11
D16V7, multiclass
    clus
vv   AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  M0                          36                           110
  M1                           3                            15
  MX                           2                            11
                               vv
clus                             I II III IV
  AMP PEAK 16(9Q34.3) MUTATED    8 14   8  5
  AMP PEAK 16(9Q34.3) WILD-TYPE 18 34  50 24
D16V8, multiclass
     clus
vv    AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  I                             8                            18
  II                           14                            34
  III                           8                            50
  IV                            5                            24
D16V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(9Q34.3) MUTATED      3   38
  AMP PEAK 16(9Q34.3) WILD-TYPE    2  134
     clus
vv    AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  NO                            3                             2
  YES                          38                           134
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 16(9Q34.3) MUTATED   27  2  2  7
  AMP PEAK 16(9Q34.3) WILD-TYPE 96  5 10 18
D16V10, multiclass
    clus
vv   AMP PEAK 16(9Q34.3) MUTATED AMP PEAK 16(9Q34.3) WILD-TYPE
  R0                          27                            96
  R1                           2                             5
  R2                           2                            10
  RX                           7                            18
D16V11, continuous

Clustering(17) Variable = Amp Peak 17(10q26.13) mutation analysis
D17V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 17(10Q26.13) MUTATED   24  4
  AMP PEAK 17(10Q26.13) WILD-TYPE 98 14
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                             28                             112 
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                              4                              14 
$`AMP PEAK 17(10Q26.13) MUTATED`
TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 
        1.35         0.82         0.66         1.48         1.25         1.05 
TCGA-BR-7716 TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4304 
        0.82         0.72         0.72         0.49        20.02        27.02 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5730 
       29.98        19.07         7.07        12.00         1.02         4.01 
TCGA-CG-5732 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6818 
       55.04        15.65         9.63         6.61         1.68         4.04 
TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-8099 
        0.62        72.23         0.39         1.02 

$`AMP PEAK 17(10Q26.13) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        0.66         1.12         0.76         0.26         1.22         0.46 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.13         0.69         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 
        0.43         0.13         0.23         0.10         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 
        0.36         0.30         0.07         3.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 
       52.96         8.05        54.05         4.01        14.01        47.05 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 
       12.03        21.99         1.02         8.98        18.94         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.95        70.06        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       65.10        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 
        9.80         8.19         6.90         0.69         5.95         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        3.65         4.70         2.93         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 
        2.01         0.20         3.02         3.58        59.05         0.56 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                           0.39                            0.07 
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                          72.23                           70.06 
  AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE 
                           1.58                            1.15 
[1] "0.4 - 72.2 (1.6)" "0.1 - 70.1 (1.1)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4472                      TCGA-CG-4474 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4472                      TCGA-CG-4474 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-4472                      TCGA-CG-4474 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "AMP PEAK 17(10Q26.13) MUTATED" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "AMP PEAK 17(10Q26.13) MUTATED"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"AMP PEAK 17(10Q26.13) WILD-TYPE"   "AMP PEAK 17(10Q26.13) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
[1] "hr=" "1.8"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(10Q26.13) MUTATED     15   21
  AMP PEAK 17(10Q26.13) WILD-TYPE   55   86
        clus
vv       AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  FEMALE                            15                              55
  MALE                              21                              86
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 17(10Q26.13) MUTATED                                       3
  AMP PEAK 17(10Q26.13) WILD-TYPE                                    22
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 17(10Q26.13) MUTATED                                                       22
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                     65
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 17(10Q26.13) MUTATED                                           0
  AMP PEAK 17(10Q26.13) WILD-TYPE                                         1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 17(10Q26.13) MUTATED                                                   1
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                 9
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 17(10Q26.13) MUTATED                                                    0
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                  3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 17(10Q26.13) MUTATED                                                  3
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 17(10Q26.13) MUTATED                                                                        6
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                                     30
D17V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 17(10Q26.13) MUTATED    1 12 14  6
  AMP PEAK 17(10Q26.13) WILD-TYPE  5 42 50 37
D17V5, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  T1                             1                               5
  T2                            12                              42
  T3                            14                              50
  T4                             6                              37
                                 vv
clus                              N0 N1 N2 N3
  AMP PEAK 17(10Q26.13) MUTATED   12 13  5  4
  AMP PEAK 17(10Q26.13) WILD-TYPE 44 48 24 16
D17V6, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  N0                            12                              44
  N1                            13                              48
  N2                             5                              24
  N3                             4                              16
                                 vv
clus                               M0  M1  MX
  AMP PEAK 17(10Q26.13) MUTATED    31   2   3
  AMP PEAK 17(10Q26.13) WILD-TYPE 115  16  10
D17V7, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  M0                            31                             115
  M1                             2                              16
  MX                             3                              10
                                 vv
clus                               I II III IV
  AMP PEAK 17(10Q26.13) MUTATED    6  9  10  8
  AMP PEAK 17(10Q26.13) WILD-TYPE 20 39  48 21
D17V8, multiclass
     clus
vv    AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  I                               6                              20
  II                              9                              39
  III                            10                              48
  IV                              8                              21
D17V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(10Q26.13) MUTATED      2   34
  AMP PEAK 17(10Q26.13) WILD-TYPE    3  138
     clus
vv    AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  NO                              2                               3
  YES                            34                             138
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 17(10Q26.13) MUTATED   26  1  2  6
  AMP PEAK 17(10Q26.13) WILD-TYPE 97  6 10 19
D17V10, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) MUTATED AMP PEAK 17(10Q26.13) WILD-TYPE
  R0                            26                              97
  R1                             1                               6
  R2                             2                              10
  RX                             6                              19
D17V11, continuous

Clustering(18) Variable = Amp Peak 18(11p13) mutation analysis
D18V1, survival
                              sevent
clus2                            0   1
  AMP PEAK 18(11P13) MUTATED    19   2
  AMP PEAK 18(11P13) WILD-TYPE 103  16
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                          21                          119 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                           2                           16 
$`AMP PEAK 18(11P13) MUTATED`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7717 TCGA-BR-7901 
        0.10         1.41         1.35         0.82         0.69         0.95 
TCGA-BR-A4IY TCGA-BR-A4J2 TCGA-BR-A4J8 TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4449 
        0.39         0.79         0.23        20.02        54.05        19.07 
TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5722 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7916 
       12.00         6.94         0.95         4.27         0.62         3.02 
TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7808 
        1.02         0.56         3.55 

$`AMP PEAK 18(11P13) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 
        5.62         0.95         1.35         0.85         0.62         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        1.71         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        1.25         0.13         1.05         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.72         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 
        0.43         0.13         0.10         0.72         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        0.36         0.49         0.30         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02        52.96         8.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        47.05        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 
       18.94         7.07         1.02         1.02         1.02         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         5.98        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        7.79         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7998 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        3.58        59.05        26.43         6.87         2.53 

  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                        0.10                         0.07 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                       54.05                        72.23 
  AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE 
                        1.02                         1.25 
[1] "0.1 - 54.0 (1.0)" "0.1 - 72.2 (1.2)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 18(11P13) WILD-TYPE"   "AMP PEAK 18(11P13) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(11P13) MUTATED" "AMP PEAK 18(11P13) WILD-TYPE" 
[1] "hr=" "1.1"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED      9   20
  AMP PEAK 18(11P13) WILD-TYPE   61   87
        clus
vv       AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  FEMALE                          9                           61
  MALE                           20                           87
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 18(11P13) MUTATED                                       4
  AMP PEAK 18(11P13) WILD-TYPE                                    21
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 18(11P13) MUTATED                                                       18
  AMP PEAK 18(11P13) WILD-TYPE                                                     69
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 18(11P13) MUTATED                                           0
  AMP PEAK 18(11P13) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 18(11P13) MUTATED                                                   2
  AMP PEAK 18(11P13) WILD-TYPE                                                 8
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 18(11P13) MUTATED                                                    0
  AMP PEAK 18(11P13) WILD-TYPE                                                  3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 18(11P13) MUTATED                                                  1
  AMP PEAK 18(11P13) WILD-TYPE                                                9
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 18(11P13) MUTATED                                                                        3
  AMP PEAK 18(11P13) WILD-TYPE                                                                     33
D18V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 18(11P13) MUTATED    0  5 13  8
  AMP PEAK 18(11P13) WILD-TYPE  6 49 51 35
D18V5, multiclass
    clus
vv   AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  T1                          0                            6
  T2                          5                           49
  T3                         13                           51
  T4                          8                           35
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 18(11P13) MUTATED    5 11  5  5
  AMP PEAK 18(11P13) WILD-TYPE 51 50 24 15
D18V6, multiclass
    clus
vv   AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  N0                          5                           51
  N1                         11                           50
  N2                          5                           24
  N3                          5                           15
                              vv
clus                            M0  M1  MX
  AMP PEAK 18(11P13) MUTATED    22   3   4
  AMP PEAK 18(11P13) WILD-TYPE 124  15   9
D18V7, multiclass
    clus
vv   AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  M0                         22                          124
  M1                          3                           15
  MX                          4                            9
                              vv
clus                            I II III IV
  AMP PEAK 18(11P13) MUTATED    2  7   9  7
  AMP PEAK 18(11P13) WILD-TYPE 24 41  49 22
D18V8, multiclass
     clus
vv    AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  I                            2                           24
  II                           7                           41
  III                          9                           49
  IV                           7                           22
D18V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) MUTATED      1   28
  AMP PEAK 18(11P13) WILD-TYPE    4  144
     clus
vv    AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  NO                           1                            4
  YES                         28                          144
                              vv
clus                            R0  R1  R2  RX
  AMP PEAK 18(11P13) MUTATED    18   2   2   5
  AMP PEAK 18(11P13) WILD-TYPE 105   5  10  20
D18V10, multiclass
    clus
vv   AMP PEAK 18(11P13) MUTATED AMP PEAK 18(11P13) WILD-TYPE
  R0                         18                          105
  R1                          2                            5
  R2                          2                           10
  RX                          5                           20
D18V11, continuous

Clustering(19) Variable = Amp Peak 19(11q13.3) mutation analysis
D19V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 19(11Q13.3) MUTATED    18   3
  AMP PEAK 19(11Q13.3) WILD-TYPE 104  15
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                            21                            119 
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                             3                             15 
$`AMP PEAK 19(11Q13.3) MUTATED`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-7704 TCGA-BR-7717 TCGA-BR-7901 TCGA-BR-A4IY 
        1.41         1.35         1.25         0.69         0.95         0.39 
TCGA-BR-A4PF TCGA-CD-5799 TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4449 
        0.72         0.69        20.02        54.05        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4472 TCGA-CG-5722 TCGA-CG-5724 TCGA-EQ-8122 TCGA-F1-6875 
       12.03        12.00         0.95        12.03         7.79        72.23 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 
        1.02        59.05         0.56 

$`AMP PEAK 19(11Q13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 
        1.48         0.46         0.13         1.05         0.82         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        4.54         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.76         0.20         0.59         0.92         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.82         0.36         0.49         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
       27.02        15.95         1.02        52.96         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       14.01        29.98        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        1.02         0.99         5.98        70.06        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        0.62         6.54         2.01         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.58        26.43         6.87         3.55         2.53 

  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                          0.39                           0.07 
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE 
                          1.41                           1.18 
[1] "0.4 - 72.2 (1.4)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 19(11Q13.3) MUTATED" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 19(11Q13.3) WILD-TYPE"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "AMP PEAK 19(11Q13.3) MUTATED"   "AMP PEAK 19(11Q13.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
[1] "hr=" "2.9"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q13.3) MUTATED      7   26
  AMP PEAK 19(11Q13.3) WILD-TYPE   63   81
        clus
vv       AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  FEMALE                            7                             63
  MALE                             26                             81
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 19(11Q13.3) MUTATED                                       3
  AMP PEAK 19(11Q13.3) WILD-TYPE                                    22
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 19(11Q13.3) MUTATED                                                       18
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                     69
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 19(11Q13.3) MUTATED                                           0
  AMP PEAK 19(11Q13.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 19(11Q13.3) MUTATED                                                   3
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 19(11Q13.3) MUTATED                                                    0
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 19(11Q13.3) MUTATED                                                  0
  AMP PEAK 19(11Q13.3) WILD-TYPE                                               10
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 19(11Q13.3) MUTATED                                                                        7
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                                     29
D19V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 19(11Q13.3) MUTATED    1  7 14  7
  AMP PEAK 19(11Q13.3) WILD-TYPE  5 47 50 36
D19V5, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  T1                            1                              5
  T2                            7                             47
  T3                           14                             50
  T4                            7                             36
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 19(11Q13.3) MUTATED    8 11  7  3
  AMP PEAK 19(11Q13.3) WILD-TYPE 48 50 22 17
D19V6, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  N0                            8                             48
  N1                           11                             50
  N2                            7                             22
  N3                            3                             17
                                vv
clus                              M0  M1  MX
  AMP PEAK 19(11Q13.3) MUTATED    27   2   4
  AMP PEAK 19(11Q13.3) WILD-TYPE 119  16   9
D19V7, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  M0                           27                            119
  M1                            2                             16
  MX                            4                              9
                                vv
clus                              I II III IV
  AMP PEAK 19(11Q13.3) MUTATED    3 10   8  7
  AMP PEAK 19(11Q13.3) WILD-TYPE 23 38  50 22
D19V8, multiclass
     clus
vv    AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  I                              3                             23
  II                            10                             38
  III                            8                             50
  IV                             7                             22
D19V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q13.3) MUTATED      1   32
  AMP PEAK 19(11Q13.3) WILD-TYPE    4  140
     clus
vv    AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  NO                             1                              4
  YES                           32                            140
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 19(11Q13.3) MUTATED    21   2   2   6
  AMP PEAK 19(11Q13.3) WILD-TYPE 102   5  10  19
D19V10, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) MUTATED AMP PEAK 19(11Q13.3) WILD-TYPE
  R0                           21                            102
  R1                            2                              5
  R2                            2                             10
  RX                            6                             19
D19V11, continuous

Clustering(20) Variable = Amp Peak 20(12p12.1) mutation analysis
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(12P12.1) MUTATED   30  4
  AMP PEAK 20(12P12.1) WILD-TYPE 92 14
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                            34                            106 
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                             4                             14 
$`AMP PEAK 20(12P12.1) MUTATED`
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-6801 TCGA-BR-7723 
        0.85         0.62         1.71         1.22         1.12         4.54 
TCGA-BR-7901 TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 
        0.95         0.72         0.79         0.72         0.82         0.69 
TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4472 TCGA-CG-4474 
        0.30        20.02        47.05        21.99        12.00         1.02 
TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5727 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 
        0.95        12.03        31.04         3.58         9.80        15.65 
TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-5647 TCGA-FP-7735 
        8.19         6.61         4.70         2.93         0.62         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-IN-7808 TCGA-IP-7968 
        0.20         3.58         3.55         2.53 

$`AMP PEAK 20(12P12.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6802 
        0.82         0.62         2.17         0.99         0.66         0.76 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 
        0.66         0.26         1.22         1.48         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 
        0.13         1.05         0.82         0.69         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.59         0.92         0.39         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 
        0.13         0.23         0.10         0.36         0.49         0.07 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 
       54.05         4.01        14.01        29.98        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5716 
        1.02         8.98        18.94         7.07         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 
        6.94         1.02         1.02         0.99         5.98        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 
        7.99         8.65         4.54         9.63         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6822 
        5.95         4.14         1.68         3.65         4.04         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-8099 
        7.79         6.54         2.01        72.23         3.02         1.02 
TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 
       59.05         0.56        26.43         6.87 

  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                          0.20                           0.07 
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                         47.05                          72.23 
  AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE 
                          2.12                           1.20 
[1] "0.2 - 47.0 (2.1)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"   "AMP PEAK 20(12P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "AMP PEAK 20(12P12.1) MUTATED" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 20(12P12.1) MUTATED"   "AMP PEAK 20(12P12.1) MUTATED" 
[1] "hr=" "1.1"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(12P12.1) MUTATED     13   27
  AMP PEAK 20(12P12.1) WILD-TYPE   57   80
        clus
vv       AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  FEMALE                           13                             57
  MALE                             27                             80
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 20(12P12.1) MUTATED                                       8
  AMP PEAK 20(12P12.1) WILD-TYPE                                    17
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 20(12P12.1) MUTATED                                                       20
  AMP PEAK 20(12P12.1) WILD-TYPE                                                     67
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 20(12P12.1) MUTATED                                           0
  AMP PEAK 20(12P12.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 20(12P12.1) MUTATED                                                   2
  AMP PEAK 20(12P12.1) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 20(12P12.1) MUTATED                                                    0
  AMP PEAK 20(12P12.1) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 20(12P12.1) MUTATED                                                  4
  AMP PEAK 20(12P12.1) WILD-TYPE                                                6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 20(12P12.1) MUTATED                                                                        4
  AMP PEAK 20(12P12.1) WILD-TYPE                                                                     32
D20V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 20(12P12.1) MUTATED    0  8 21 10
  AMP PEAK 20(12P12.1) WILD-TYPE  6 46 43 33
D20V5, multiclass
    clus
vv   AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  T1                            0                              6
  T2                            8                             46
  T3                           21                             43
  T4                           10                             33
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 20(12P12.1) MUTATED    8 13 13  6
  AMP PEAK 20(12P12.1) WILD-TYPE 48 48 16 14
D20V6, multiclass
    clus
vv   AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  N0                            8                             48
  N1                           13                             48
  N2                           13                             16
  N3                            6                             14
                                vv
clus                              M0  M1  MX
  AMP PEAK 20(12P12.1) MUTATED    31   6   3
  AMP PEAK 20(12P12.1) WILD-TYPE 115  12  10
D20V7, multiclass
    clus
vv   AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  M0                           31                            115
  M1                            6                             12
  MX                            3                             10
                                vv
clus                              I II III IV
  AMP PEAK 20(12P12.1) MUTATED    1 10  20  8
  AMP PEAK 20(12P12.1) WILD-TYPE 25 38  38 21
D20V8, multiclass
     clus
vv    AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  I                              1                             25
  II                            10                             38
  III                           20                             38
  IV                             8                             21
D20V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(12P12.1) MUTATED      0   40
  AMP PEAK 20(12P12.1) WILD-TYPE    5  132
     clus
vv    AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  NO                             0                              5
  YES                           40                            132
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 20(12P12.1) MUTATED    23   3   5   4
  AMP PEAK 20(12P12.1) WILD-TYPE 100   4   7  21
D20V10, multiclass
    clus
vv   AMP PEAK 20(12P12.1) MUTATED AMP PEAK 20(12P12.1) WILD-TYPE
  R0                           23                            100
  R1                            3                              4
  R2                            5                              7
  RX                            4                             21
D20V11, continuous

Clustering(21) Variable = Amp Peak 21(12q15) mutation analysis
D21V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 21(12Q15) MUTATED   28  4
  AMP PEAK 21(12Q15) WILD-TYPE 94 14
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                          32                          108 
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                           4                           14 
$`AMP PEAK 21(12Q15) MUTATED`
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-7723 TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 
        0.85         0.62         4.54         0.72         0.53         0.13 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4444 
        0.72         0.82         0.69         0.30         3.02        47.05 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5722 TCGA-CG-5725 
       12.03        21.99        12.00         1.02         0.95        15.02 
TCGA-CG-5727 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 
       31.04        55.04         3.58         9.80        15.65         8.19 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 TCGA-EQ-5647 TCGA-FP-7916 TCGA-FP-7998 
        6.61         4.14         4.70         0.62         3.02         3.58 
TCGA-FP-8631 TCGA-IN-7808 
        0.56         3.55 

$`AMP PEAK 21(12Q15) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.39         0.79         0.79         0.43         0.23         0.10 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 
        0.36         0.49         0.07        20.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        1.02        52.96         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       29.98        19.07         1.02         8.98        18.94         7.07 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 
        5.98        70.06        12.03        28.96        65.10         4.01 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6522 
       21.07         7.99         8.65         4.54         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 
        0.69         5.95         1.68         3.65         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        4.27         7.79         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        0.20         1.02        59.05        26.43         6.87         2.53 

  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                        0.13                         0.07 
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                       55.04                        72.23 
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                       3.565                        1.150 
[1] "0.1 - 55.0 (3.6)" "0.1 - 72.2 (1.1)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 21(12Q15) MUTATED"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 21(12Q15) WILD-TYPE"   "AMP PEAK 21(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 21(12Q15) MUTATED" "AMP PEAK 21(12Q15) WILD-TYPE" 
[1] "hr=" "1.1"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(12Q15) MUTATED     13   27
  AMP PEAK 21(12Q15) WILD-TYPE   57   80
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  FEMALE                         13                           57
  MALE                           27                           80
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 21(12Q15) MUTATED                                       7
  AMP PEAK 21(12Q15) WILD-TYPE                                    18
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 21(12Q15) MUTATED                                                       18
  AMP PEAK 21(12Q15) WILD-TYPE                                                     69
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 21(12Q15) MUTATED                                           0
  AMP PEAK 21(12Q15) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 21(12Q15) MUTATED                                                   2
  AMP PEAK 21(12Q15) WILD-TYPE                                                 8
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 21(12Q15) MUTATED                                                    1
  AMP PEAK 21(12Q15) WILD-TYPE                                                  2
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 21(12Q15) MUTATED                                                  3
  AMP PEAK 21(12Q15) WILD-TYPE                                                7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 21(12Q15) MUTATED                                                                        6
  AMP PEAK 21(12Q15) WILD-TYPE                                                                     30
D21V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 21(12Q15) MUTATED    0 12 15 11
  AMP PEAK 21(12Q15) WILD-TYPE  6 42 49 32
D21V5, multiclass
    clus
vv   AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  T1                          0                            6
  T2                         12                           42
  T3                         15                           49
  T4                         11                           32
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 21(12Q15) MUTATED    9 12 11  7
  AMP PEAK 21(12Q15) WILD-TYPE 47 49 18 13
D21V6, multiclass
    clus
vv   AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  N0                          9                           47
  N1                         12                           49
  N2                         11                           18
  N3                          7                           13
                              vv
clus                            M0  M1  MX
  AMP PEAK 21(12Q15) MUTATED    30   6   4
  AMP PEAK 21(12Q15) WILD-TYPE 116  12   9
D21V7, multiclass
    clus
vv   AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  M0                         30                          116
  M1                          6                           12
  MX                          4                            9
                              vv
clus                            I II III IV
  AMP PEAK 21(12Q15) MUTATED    3 12  14  9
  AMP PEAK 21(12Q15) WILD-TYPE 23 36  44 20
D21V8, multiclass
     clus
vv    AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  I                            3                           23
  II                          12                           36
  III                         14                           44
  IV                           9                           20
D21V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(12Q15) MUTATED      2   38
  AMP PEAK 21(12Q15) WILD-TYPE    3  134
     clus
vv    AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  NO                           2                            3
  YES                         38                          134
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 21(12Q15) MUTATED   24  1  5  5
  AMP PEAK 21(12Q15) WILD-TYPE 99  6  7 20
D21V10, multiclass
    clus
vv   AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  R0                         24                           99
  R1                          1                            6
  R2                          5                            7
  RX                          5                           20
D21V11, continuous

Clustering(22) Variable = Amp Peak 22(13q12.3) mutation analysis
D22V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 22(13Q12.3) MUTATED   44  6
  AMP PEAK 22(13Q12.3) WILD-TYPE 78 12
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                            50                             90 
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                             6                             12 
$`AMP PEAK 22(13Q12.3) MUTATED`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6801 
        0.10         0.85         0.62         0.62         1.71         1.12 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-A4J1 
        1.48         1.25         0.69         4.54         0.95         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5799 
        0.79         0.43         0.23         0.10         0.72         0.69 
TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
        0.36        20.02         3.02        15.95        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5719 
       54.05        47.05         7.07        12.00         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       12.03        31.04         4.01        55.04         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6815 
        3.58         9.80         8.19         0.69         6.61         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 
        4.70         4.04         2.93         0.62        72.23         0.39 
TCGA-FP-7829 TCGA-IN-7808 
        0.20         3.55 

$`AMP PEAK 22(13Q12.3) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 
        2.17         0.99         1.22         0.66         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        0.26         1.22         0.46         0.13         1.05         0.82 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.16         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.76         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.53         0.13         0.82         0.49         0.30         0.07 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 
       27.02         1.02         4.01        14.01        29.98        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4477 
       12.03        21.99         1.02         8.98        18.94         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5579 
       70.06        15.02        28.96        65.10        21.07         4.54 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 
       15.65         9.63         6.90         5.95         4.14         1.68 
TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7916 TCGA-FP-7998 
        4.27         7.79         6.54         2.01         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        1.02        59.05         0.56        26.43         6.87         2.53 

  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE 
                         2.975                          1.065 
[1] "0.1 - 72.2 (3.0)" "0.1 - 70.1 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 22(13Q12.3) WILD-TYPE"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 22(13Q12.3) MUTATED"   "AMP PEAK 22(13Q12.3) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 22(13Q12.3) MUTATED" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
[1] "hr=" "1.7"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(13Q12.3) MUTATED     19   45
  AMP PEAK 22(13Q12.3) WILD-TYPE   51   62
        clus
vv       AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  FEMALE                           19                             51
  MALE                             45                             62
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 22(13Q12.3) MUTATED                                      10
  AMP PEAK 22(13Q12.3) WILD-TYPE                                    15
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 22(13Q12.3) MUTATED                                                       30
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                     57
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 22(13Q12.3) MUTATED                                           0
  AMP PEAK 22(13Q12.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 22(13Q12.3) MUTATED                                                   3
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 22(13Q12.3) MUTATED                                                    1
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 22(13Q12.3) MUTATED                                                  6
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 22(13Q12.3) MUTATED                                                                       12
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                                     24
D22V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 22(13Q12.3) MUTATED    1 23 22 13
  AMP PEAK 22(13Q12.3) WILD-TYPE  5 31 42 30
D22V5, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  T1                            1                              5
  T2                           23                             31
  T3                           22                             42
  T4                           13                             30
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 22(13Q12.3) MUTATED   15 20 11 12
  AMP PEAK 22(13Q12.3) WILD-TYPE 41 41 18  8
D22V6, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  N0                           15                             41
  N1                           20                             41
  N2                           11                             18
  N3                           12                              8
                                vv
clus                             M0 M1 MX
  AMP PEAK 22(13Q12.3) MUTATED   55  7  2
  AMP PEAK 22(13Q12.3) WILD-TYPE 91 11 11
D22V7, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  M0                           55                             91
  M1                            7                             11
  MX                            2                             11
                                vv
clus                              I II III IV
  AMP PEAK 22(13Q12.3) MUTATED    5 17  21 14
  AMP PEAK 22(13Q12.3) WILD-TYPE 21 31  37 15
D22V8, multiclass
     clus
vv    AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  I                              5                             21
  II                            17                             31
  III                           21                             37
  IV                            14                             15
D22V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(13Q12.3) MUTATED      2   62
  AMP PEAK 22(13Q12.3) WILD-TYPE    3  110
     clus
vv    AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  NO                             2                              3
  YES                           62                            110
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 22(13Q12.3) MUTATED   43  4  5  9
  AMP PEAK 22(13Q12.3) WILD-TYPE 80  3  7 16
D22V10, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) MUTATED AMP PEAK 22(13Q12.3) WILD-TYPE
  R0                           43                             80
  R1                            4                              3
  R2                            5                              7
  RX                            9                             16
D22V11, continuous

Clustering(23) Variable = Amp Peak 23(13q22.1) mutation analysis
D23V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 23(13Q22.1) MUTATED   51  8
  AMP PEAK 23(13Q22.1) WILD-TYPE 71 10
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                            59                             81 
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                             8                             10 
$`AMP PEAK 23(13Q22.1) MUTATED`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6707 TCGA-BR-6801 
        0.10         0.85         0.62         0.62         0.99         1.12 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7723 
        1.48         1.25         1.05         0.82         0.69         4.54 
TCGA-BR-7901 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J8 
        0.95         0.39         0.72         0.79         0.43         0.23 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4300 
        0.10         0.72         0.69         0.36         0.30        20.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 
       15.95         1.02        52.96        54.05         4.01        29.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 
        7.07        12.00         1.02         1.02         1.02         5.98 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       70.06        15.02         4.01        55.04         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6526 
        3.58         4.54         9.80         8.19         0.69         6.61 
TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        4.14         3.65         4.04         2.93         4.27         0.62 
TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8631 TCGA-IP-7968 
       72.23         0.20         1.02         0.56         2.53 

$`AMP PEAK 23(13Q22.1) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 
        1.71         2.17         1.22         0.66         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 
        0.26         1.22         0.46         0.13         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-CD-5798 
        0.59         0.92         0.79         0.53         0.13         0.82 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4437 TCGA-CG-4441 
        0.49         0.07         3.02        27.02         8.05        14.01 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5722 
       18.94         1.02         1.02         6.94         0.99         0.95 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-6519 
       12.03        28.96        31.04        65.10        21.07        15.65 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-8122 
        9.63         6.90         5.95         1.68         4.70         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 
        6.54         2.01         0.39         3.02         3.58        59.05 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       26.43         6.87         3.55 

  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                         72.23                          65.10 
  AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE 
                          1.25                           1.22 
[1] "0.1 - 72.2 (1.2)" "0.1 - 65.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 23(13Q22.1) MUTATED"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 23(13Q22.1) MUTATED" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(13Q22.1) WILD-TYPE"   "AMP PEAK 23(13Q22.1) MUTATED" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(13Q22.1) MUTATED     20   54
  AMP PEAK 23(13Q22.1) WILD-TYPE   50   53
        clus
vv       AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  FEMALE                           20                             50
  MALE                             54                             53
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 23(13Q22.1) MUTATED                                       8
  AMP PEAK 23(13Q22.1) WILD-TYPE                                    17
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 23(13Q22.1) MUTATED                                                       39
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                     48
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 23(13Q22.1) MUTATED                                           0
  AMP PEAK 23(13Q22.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 23(13Q22.1) MUTATED                                                   3
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 23(13Q22.1) MUTATED                                                    2
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 23(13Q22.1) MUTATED                                                  6
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 23(13Q22.1) MUTATED                                                                       15
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                                     21
D23V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 23(13Q22.1) MUTATED    2 23 26 15
  AMP PEAK 23(13Q22.1) WILD-TYPE  4 31 38 28
D23V5, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  T1                            2                              4
  T2                           23                             31
  T3                           26                             38
  T4                           15                             28
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 23(13Q22.1) MUTATED   21 25 13  9
  AMP PEAK 23(13Q22.1) WILD-TYPE 35 36 16 11
D23V6, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  N0                           21                             35
  N1                           25                             36
  N2                           13                             16
  N3                            9                             11
                                vv
clus                             M0 M1 MX
  AMP PEAK 23(13Q22.1) MUTATED   64  6  4
  AMP PEAK 23(13Q22.1) WILD-TYPE 82 12  9
D23V7, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  M0                           64                             82
  M1                            6                             12
  MX                            4                              9
                                vv
clus                              I II III IV
  AMP PEAK 23(13Q22.1) MUTATED    7 24  18 15
  AMP PEAK 23(13Q22.1) WILD-TYPE 19 24  40 14
D23V8, multiclass
     clus
vv    AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  I                              7                             19
  II                            24                             24
  III                           18                             40
  IV                            15                             14
D23V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(13Q22.1) MUTATED      2   72
  AMP PEAK 23(13Q22.1) WILD-TYPE    3  100
     clus
vv    AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  NO                             2                              3
  YES                           72                            100
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 23(13Q22.1) MUTATED   49  4  5 12
  AMP PEAK 23(13Q22.1) WILD-TYPE 74  3  7 13
D23V10, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) MUTATED AMP PEAK 23(13Q22.1) WILD-TYPE
  R0                           49                             74
  R1                            4                              3
  R2                            5                              7
  RX                           12                             13
D23V11, continuous

Clustering(24) Variable = Amp Peak 24(15q26.1) mutation analysis
D24V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 24(15Q26.1) MUTATED   30  5
  AMP PEAK 24(15Q26.1) WILD-TYPE 92 13
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                            35                            105 
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                             5                             13 
$`AMP PEAK 24(15Q26.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-A4J4 
        1.35         1.22         1.48         1.05         0.69         0.53 
TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4474 
        0.72         0.69         0.36        47.05        19.07         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
        6.94         1.02        12.03        31.04         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6528 
        7.99         4.54        15.65         9.63         5.95         1.68 
TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 
        3.65         4.04         4.27         0.62         7.79        72.23 
TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7808 TCGA-IP-7968 
        0.20         1.02         0.56         3.55         2.53 

$`AMP PEAK 24(15Q26.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.76         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.72         0.79         0.43         0.13         0.23         0.10 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        0.82         0.49         0.30         0.07        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
        4.01        14.01        29.98        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 
        8.98        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        70.06        15.02 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 
       28.96        65.10        21.07         8.65         3.58         9.80 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 
        8.19         6.90         0.69         6.61         4.14         4.70 
TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        2.93         6.54         2.01         0.39         3.02         3.58 
TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7806 
       59.05        26.43         6.87 

  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                          0.20                           0.07 
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE 
                          3.55                           1.02 
[1] "0.2 - 72.2 (3.5)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 24(15Q26.1) MUTATED" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 24(15Q26.1) WILD-TYPE"   "AMP PEAK 24(15Q26.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 24(15Q26.1) MUTATED"   "AMP PEAK 24(15Q26.1) MUTATED" 
[1] "hr=" "1.4"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(15Q26.1) MUTATED     13   31
  AMP PEAK 24(15Q26.1) WILD-TYPE   57   76
        clus
vv       AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  FEMALE                           13                             57
  MALE                             31                             76
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 24(15Q26.1) MUTATED                                       7
  AMP PEAK 24(15Q26.1) WILD-TYPE                                    18
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 24(15Q26.1) MUTATED                                                       18
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                     69
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 24(15Q26.1) MUTATED                                           0
  AMP PEAK 24(15Q26.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 24(15Q26.1) MUTATED                                                   4
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 24(15Q26.1) MUTATED                                                    1
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 24(15Q26.1) MUTATED                                                  4
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 24(15Q26.1) MUTATED                                                                        8
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                                     28
D24V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 24(15Q26.1) MUTATED    0 16 19  7
  AMP PEAK 24(15Q26.1) WILD-TYPE  6 38 45 36
D24V5, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  T1                            0                              6
  T2                           16                             38
  T3                           19                             45
  T4                            7                             36
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 24(15Q26.1) MUTATED   11 13 11  7
  AMP PEAK 24(15Q26.1) WILD-TYPE 45 48 18 13
D24V6, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  N0                           11                             45
  N1                           13                             48
  N2                           11                             18
  N3                            7                             13
                                vv
clus                              M0  M1  MX
  AMP PEAK 24(15Q26.1) MUTATED    33   6   5
  AMP PEAK 24(15Q26.1) WILD-TYPE 113  12   8
D24V7, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  M0                           33                            113
  M1                            6                             12
  MX                            5                              8
                                vv
clus                              I II III IV
  AMP PEAK 24(15Q26.1) MUTATED    4 13  15  9
  AMP PEAK 24(15Q26.1) WILD-TYPE 22 35  43 20
D24V8, multiclass
     clus
vv    AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  I                              4                             22
  II                            13                             35
  III                           15                             43
  IV                             9                             20
D24V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(15Q26.1) MUTATED      2   42
  AMP PEAK 24(15Q26.1) WILD-TYPE    3  130
     clus
vv    AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  NO                             2                              3
  YES                           42                            130
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 24(15Q26.1) MUTATED   27  3  4  5
  AMP PEAK 24(15Q26.1) WILD-TYPE 96  4  8 20
D24V10, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) MUTATED AMP PEAK 24(15Q26.1) WILD-TYPE
  R0                           27                             96
  R1                            3                              4
  R2                            4                              8
  RX                            5                             20
D24V11, continuous

Clustering(25) Variable = Amp Peak 25(17q12) mutation analysis
D25V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 25(17Q12) MUTATED   33  7
  AMP PEAK 25(17Q12) WILD-TYPE 89 11
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                          40                          100 
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                           7                           11 
$`AMP PEAK 25(17Q12) MUTATED`
TCGA-B7-5818 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-A4IY 
        0.10         0.62         1.48         1.05         0.69         0.39 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 
        0.72         0.53         0.69         0.36        20.02         3.02 
TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       52.96         4.01        47.05        19.07        12.03        21.99 
TCGA-CG-4466 TCGA-CG-5716 TCGA-CG-5719 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5730 
       18.94         1.02         1.02         0.95        12.03         4.01 
TCGA-CG-5732 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
       55.04         8.19         5.95         6.61         4.14         3.65 
TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 
        4.70         2.93         4.27         0.62        72.23         0.39 
TCGA-FP-7916 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        3.02         0.56        26.43         2.53 

$`AMP PEAK 25(17Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.76         0.20         0.59         0.92         0.79         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 
        0.43         0.13         0.23         0.10         0.72         0.82 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.49         0.30         0.07        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4462 TCGA-CG-4465 
        8.05        54.05        14.01        29.98         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       65.10        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 
        9.80        15.65         9.63         6.90         0.69         1.68 
TCGA-D7-6818 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 
        4.04         7.79         6.54         2.01         0.20         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-IN-7806 TCGA-IN-7808 
        1.02        59.05         6.87         3.55 

  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                        0.10                         0.07 
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                       72.23                        70.06 
  AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE 
                       3.335                        1.050 
[1] "0.1 - 72.2 (3.3)" "0.1 - 70.1 (1.1)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 25(17Q12) MUTATED"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 25(17Q12) MUTATED" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 25(17Q12) WILD-TYPE"   "AMP PEAK 25(17Q12) MUTATED" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 25(17Q12) MUTATED     13   34
  AMP PEAK 25(17Q12) WILD-TYPE   57   73
        clus
vv       AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  FEMALE                         13                           57
  MALE                           34                           73
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 25(17Q12) MUTATED                                       5
  AMP PEAK 25(17Q12) WILD-TYPE                                    20
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 25(17Q12) MUTATED                                                       20
  AMP PEAK 25(17Q12) WILD-TYPE                                                     67
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 25(17Q12) MUTATED                                           1
  AMP PEAK 25(17Q12) WILD-TYPE                                         0
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 25(17Q12) MUTATED                                                   2
  AMP PEAK 25(17Q12) WILD-TYPE                                                 8
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 25(17Q12) MUTATED                                                    2
  AMP PEAK 25(17Q12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 25(17Q12) MUTATED                                                  5
  AMP PEAK 25(17Q12) WILD-TYPE                                                5
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 25(17Q12) MUTATED                                                                       10
  AMP PEAK 25(17Q12) WILD-TYPE                                                                     26
D25V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 25(17Q12) MUTATED    0 20 15 10
  AMP PEAK 25(17Q12) WILD-TYPE  6 34 49 33
D25V5, multiclass
    clus
vv   AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  T1                          0                            6
  T2                         20                           34
  T3                         15                           49
  T4                         10                           33
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 25(17Q12) MUTATED   15 12 11  6
  AMP PEAK 25(17Q12) WILD-TYPE 41 49 18 14
D25V6, multiclass
    clus
vv   AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  N0                         15                           41
  N1                         12                           49
  N2                         11                           18
  N3                          6                           14
                              vv
clus                            M0  M1  MX
  AMP PEAK 25(17Q12) MUTATED    31   9   7
  AMP PEAK 25(17Q12) WILD-TYPE 115   9   6
D25V7, multiclass
    clus
vv   AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  M0                         31                          115
  M1                          9                            9
  MX                          7                            6
                              vv
clus                            I II III IV
  AMP PEAK 25(17Q12) MUTATED    8 12  13 11
  AMP PEAK 25(17Q12) WILD-TYPE 18 36  45 18
D25V8, multiclass
     clus
vv    AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  I                            8                           18
  II                          12                           36
  III                         13                           45
  IV                          11                           18
D25V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 25(17Q12) MUTATED      2   45
  AMP PEAK 25(17Q12) WILD-TYPE    3  127
     clus
vv    AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  NO                           2                            3
  YES                         45                          127
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 25(17Q12) MUTATED   32  0  8  3
  AMP PEAK 25(17Q12) WILD-TYPE 91  7  4 22
D25V10, multiclass
    clus
vv   AMP PEAK 25(17Q12) MUTATED AMP PEAK 25(17Q12) WILD-TYPE
  R0                         32                           91
  R1                          0                            7
  R2                          8                            4
  RX                          3                           22
D25V11, continuous

Clustering(26) Variable = Amp Peak 26(18q11.2) mutation analysis
D26V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 26(18Q11.2) MUTATED   27  9
  AMP PEAK 26(18Q11.2) WILD-TYPE 95  9
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            36                            104 
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                             9                              9 
$`AMP PEAK 26(18Q11.2) MUTATED`
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-7715 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 
        0.82         0.62         1.05         0.16         4.54         0.95 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5798 
        0.39         0.72         0.13         0.23         0.72         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4440 TCGA-CG-4441 
        0.69         0.36        20.02         3.02         4.01        14.01 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5724 
       19.07        21.99         7.07        12.00         1.02        12.03 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        4.54         9.80         8.19         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-8631 TCGA-HJ-7597 
        1.68         4.70         0.62        72.23         0.56        26.43 

$`AMP PEAK 26(18Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.85         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 
        0.43         0.10         0.49         0.30         0.07        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 
       15.95         1.02        52.96         8.05        54.05        29.98 
TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4477 
       47.05        12.03         1.02         8.98        18.94         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 TCGA-D7-6818 
       15.65         9.63         6.90         0.69         3.65         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 
        2.93         4.27         7.79         6.54         2.01         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-IN-7806 
        0.20         3.02         3.58         1.02        59.05         6.87 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                          0.13                           0.07 
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                         3.515                          1.200 
[1] "0.1 - 72.2 (3.5)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 26(18Q11.2) MUTATED"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"AMP PEAK 26(18Q11.2) WILD-TYPE"   "AMP PEAK 26(18Q11.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 26(18Q11.2) MUTATED" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
[1] "hr=" "2.6"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(18Q11.2) MUTATED     16   34
  AMP PEAK 26(18Q11.2) WILD-TYPE   54   73
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  FEMALE                           16                             54
  MALE                             34                             73
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 26(18Q11.2) MUTATED                                       6
  AMP PEAK 26(18Q11.2) WILD-TYPE                                    19
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 26(18Q11.2) MUTATED                                                       27
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                     60
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 26(18Q11.2) MUTATED                                           1
  AMP PEAK 26(18Q11.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 26(18Q11.2) MUTATED                                                   4
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 26(18Q11.2) MUTATED                                                    2
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 26(18Q11.2) MUTATED                                                  3
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 26(18Q11.2) MUTATED                                                                        6
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                                     30
D26V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 26(18Q11.2) MUTATED    0 13 22  9
  AMP PEAK 26(18Q11.2) WILD-TYPE  6 41 42 34
D26V5, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  T1                            0                              6
  T2                           13                             41
  T3                           22                             42
  T4                            9                             34
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 26(18Q11.2) MUTATED   11 16 10  9
  AMP PEAK 26(18Q11.2) WILD-TYPE 45 45 19 11
D26V6, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  N0                           11                             45
  N1                           16                             45
  N2                           10                             19
  N3                            9                             11
                                vv
clus                              M0  M1  MX
  AMP PEAK 26(18Q11.2) MUTATED    39   6   5
  AMP PEAK 26(18Q11.2) WILD-TYPE 107  12   8
D26V7, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  M0                           39                            107
  M1                            6                             12
  MX                            5                              8
                                vv
clus                              I II III IV
  AMP PEAK 26(18Q11.2) MUTATED    4 12  17 10
  AMP PEAK 26(18Q11.2) WILD-TYPE 22 36  41 19
D26V8, multiclass
     clus
vv    AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  I                              4                             22
  II                            12                             36
  III                           17                             41
  IV                            10                             19
D26V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(18Q11.2) MUTATED      3   47
  AMP PEAK 26(18Q11.2) WILD-TYPE    2  125
     clus
vv    AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  NO                             3                              2
  YES                           47                            125
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 26(18Q11.2) MUTATED   28  5  6  8
  AMP PEAK 26(18Q11.2) WILD-TYPE 95  2  6 17
D26V10, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  R0                           28                             95
  R1                            5                              2
  R2                            6                              6
  RX                            8                             17
D26V11, continuous

Clustering(27) Variable = Amp Peak 27(19q12) mutation analysis
D27V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 27(19Q12) MUTATED   31  3
  AMP PEAK 27(19Q12) WILD-TYPE 91 15
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                          34                          106 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                           3                           15 
$`AMP PEAK 27(19Q12) MUTATED`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        1.35         1.48         1.05         0.82         4.54         0.95 
TCGA-BR-A4J8 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4438 TCGA-CG-4444 
        0.23         0.36         0.49         0.30        54.05        47.05 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4474 TCGA-CG-5722 TCGA-CG-5730 TCGA-D7-5577 
       19.07        21.99         1.02         0.95         4.01         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6526 
        3.58         4.54         9.80         9.63         8.19         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 
        4.14         1.68         4.04         4.27         0.62        72.23 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-8631 TCGA-IN-7808 
        0.39         3.02         0.56         3.55 

$`AMP PEAK 27(19Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 
        1.22         0.46         1.25         0.13         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.79         0.53         0.43         0.13         0.10         0.72 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.82         0.69         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02        52.96         8.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       29.98        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
       12.00         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-6519 
       31.04        65.10        55.04        21.07         7.99        15.65 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 
        6.90         0.69         5.95         3.65         4.70         2.93 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8099 
        7.79         6.54         2.01         0.20         3.58         1.02 
TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
       59.05        26.43         6.87         2.53 

  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                        0.23                         0.07 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                       72.23                        70.06 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                       3.565                        1.050 
[1] "0.2 - 72.2 (3.6)" "0.1 - 70.1 (1.1)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "AMP PEAK 27(19Q12) MUTATED"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"AMP PEAK 27(19Q12) WILD-TYPE"   "AMP PEAK 27(19Q12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 27(19Q12) MUTATED" "AMP PEAK 27(19Q12) WILD-TYPE" 
[1] "hr=" "2.6"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED     17   29
  AMP PEAK 27(19Q12) WILD-TYPE   53   78
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  FEMALE                         17                           53
  MALE                           29                           78
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 27(19Q12) MUTATED                                       6
  AMP PEAK 27(19Q12) WILD-TYPE                                    19
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 27(19Q12) MUTATED                                                       22
  AMP PEAK 27(19Q12) WILD-TYPE                                                     65
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 27(19Q12) MUTATED                                           0
  AMP PEAK 27(19Q12) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 27(19Q12) MUTATED                                                   3
  AMP PEAK 27(19Q12) WILD-TYPE                                                 7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 27(19Q12) MUTATED                                                    2
  AMP PEAK 27(19Q12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 27(19Q12) MUTATED                                                  6
  AMP PEAK 27(19Q12) WILD-TYPE                                                4
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 27(19Q12) MUTATED                                                                        5
  AMP PEAK 27(19Q12) WILD-TYPE                                                                     31
D27V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 27(19Q12) MUTATED    0 16 21  6
  AMP PEAK 27(19Q12) WILD-TYPE  6 38 43 37
D27V5, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  T1                          0                            6
  T2                         16                           38
  T3                         21                           43
  T4                          6                           37
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 27(19Q12) MUTATED   10 13 11  8
  AMP PEAK 27(19Q12) WILD-TYPE 46 48 18 12
D27V6, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  N0                         10                           46
  N1                         13                           48
  N2                         11                           18
  N3                          8                           12
                              vv
clus                            M0  M1  MX
  AMP PEAK 27(19Q12) MUTATED    35   6   5
  AMP PEAK 27(19Q12) WILD-TYPE 111  12   8
D27V7, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  M0                         35                          111
  M1                          6                           12
  MX                          5                            8
                              vv
clus                            I II III IV
  AMP PEAK 27(19Q12) MUTATED    5 13  13 10
  AMP PEAK 27(19Q12) WILD-TYPE 21 35  45 19
D27V8, multiclass
     clus
vv    AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  I                            5                           21
  II                          13                           35
  III                         13                           45
  IV                          10                           19
D27V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) MUTATED      4   42
  AMP PEAK 27(19Q12) WILD-TYPE    1  130
     clus
vv    AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  NO                           4                            1
  YES                         42                          130
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 27(19Q12) MUTATED   26  4  5  6
  AMP PEAK 27(19Q12) WILD-TYPE 97  3  7 19
D27V10, multiclass
    clus
vv   AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  R0                         26                           97
  R1                          4                            3
  R2                          5                            7
  RX                          6                           19
D27V11, continuous

Clustering(28) Variable = Amp Peak 28(20q13.2) mutation analysis
D28V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 28(20Q13.2) MUTATED   71 13
  AMP PEAK 28(20Q13.2) WILD-TYPE 51  5
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                            84                             56 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                            13                              5 
$`AMP PEAK 28(20Q13.2) MUTATED`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
        1.41         1.35         1.35         0.85         0.82         0.62 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        2.17         0.99         1.12         0.26         1.22         1.48 
TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.25         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7901 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.95         0.39         0.72         0.53         0.23         0.10 
TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 
        0.72         0.69         0.36         0.49        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       27.02        15.95        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5722 
       18.94         7.07        12.00         1.02         1.02         0.95 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        28.96        31.04         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        9.63         8.19         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        3.65         4.70         2.93         4.27         0.62         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
       72.23         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       59.05         0.56        26.43         6.87         3.55         2.53 

$`AMP PEAK 28(20Q13.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6709 
        5.62         0.10         0.95         0.62         1.71         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7851 
        0.66         0.76         0.66         0.46         0.13         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.59         0.92         0.79         0.79         0.43         0.13 
TCGA-CD-5798 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4306 TCGA-CG-4462 TCGA-CG-4465 
        0.82         0.30         0.07         1.02         1.02         8.98 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         1.02         6.94         0.99         5.98 
TCGA-CG-5723 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 
       70.06        65.10        21.07         6.90         0.69         4.04 
TCGA-EQ-8122 TCGA-F1-6177 
        7.79         6.54 

  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                         3.565                          0.870 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (0.9)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "AMP PEAK 28(20Q13.2) MUTATED" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 28(20Q13.2) MUTATED"   "AMP PEAK 28(20Q13.2) MUTATED" 
[1] "hr=" "1.6"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(20Q13.2) MUTATED     32   76
  AMP PEAK 28(20Q13.2) WILD-TYPE   38   31
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  FEMALE                           32                             38
  MALE                             76                             31
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 28(20Q13.2) MUTATED                                      11
  AMP PEAK 28(20Q13.2) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 28(20Q13.2) MUTATED                                                       54
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                     33
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 28(20Q13.2) MUTATED                                           1
  AMP PEAK 28(20Q13.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 28(20Q13.2) MUTATED                                                   5
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 28(20Q13.2) MUTATED                                                    2
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 28(20Q13.2) MUTATED                                                 10
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 28(20Q13.2) MUTATED                                                                       22
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                                     14
D28V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 28(20Q13.2) MUTATED    3 38 45 16
  AMP PEAK 28(20Q13.2) WILD-TYPE  3 16 19 27
D28V5, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  T1                            3                              3
  T2                           38                             16
  T3                           45                             19
  T4                           16                             27
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 28(20Q13.2) MUTATED   30 38 18 14
  AMP PEAK 28(20Q13.2) WILD-TYPE 26 23 11  6
D28V6, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  N0                           30                             26
  N1                           38                             23
  N2                           18                             11
  N3                           14                              6
                                vv
clus                             M0 M1 MX
  AMP PEAK 28(20Q13.2) MUTATED   88 10 10
  AMP PEAK 28(20Q13.2) WILD-TYPE 58  8  3
D28V7, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  M0                           88                             58
  M1                           10                              8
  MX                           10                              3
                                vv
clus                              I II III IV
  AMP PEAK 28(20Q13.2) MUTATED   15 28  38 17
  AMP PEAK 28(20Q13.2) WILD-TYPE 11 20  20 12
D28V8, multiclass
     clus
vv    AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  I                             15                             11
  II                            28                             20
  III                           38                             20
  IV                            17                             12
D28V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(20Q13.2) MUTATED      3  105
  AMP PEAK 28(20Q13.2) WILD-TYPE    2   67
     clus
vv    AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  NO                             3                              2
  YES                          105                             67
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 28(20Q13.2) MUTATED   76  5  7 14
  AMP PEAK 28(20Q13.2) WILD-TYPE 47  2  5 11
D28V10, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  R0                           76                             47
  R1                            5                              2
  R2                            7                              5
  RX                           14                             11
D28V11, continuous

Clustering(29) Variable = Amp Peak 29(Xq26.2) mutation analysis
D29V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 29(XQ26.2) MUTATED    21   5
  AMP PEAK 29(XQ26.2) WILD-TYPE 101  13
  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                           26                           114 
  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                            5                            13 
$`AMP PEAK 29(XQ26.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6801 TCGA-BR-7704 TCGA-BR-7717 TCGA-BR-A4IY 
        0.10         1.35         1.12         1.25         0.69         0.39 
TCGA-BR-A4J2 TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4469 
        0.79        20.02        54.05        47.05        21.99         7.07 
TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5727 TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6521 
       12.00         1.02        31.04         7.99         4.54         8.19 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 
        6.61         1.68         3.65         4.27         0.62        72.23 
TCGA-FP-7735 TCGA-IN-7808 
        0.39         3.55 

$`AMP PEAK 29(XQ26.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        0.66         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         0.13         1.05         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.76         0.20         0.59         0.92         0.79         0.72 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.53         0.43         0.13         0.23         0.10         0.72 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 
        4.01        14.01        29.98        19.07        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        8.98        18.94         1.02         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        65.10         4.01        55.04        21.07 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 
        8.65         3.58         9.80        15.65         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        0.69         5.95         4.14         4.70         4.04         2.93 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        7.79         6.54         2.01         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        1.02        59.05         0.56        26.43         6.87         2.53 

  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE 
                        3.960                         1.035 
[1] "0.1 - 72.2 (4.0)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 29(XQ26.2) MUTATED"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 29(XQ26.2) MUTATED"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 29(XQ26.2) MUTATED"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 29(XQ26.2) MUTATED"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "AMP PEAK 29(XQ26.2) MUTATED"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 29(XQ26.2) WILD-TYPE"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "AMP PEAK 29(XQ26.2) MUTATED"   "AMP PEAK 29(XQ26.2) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 29(XQ26.2) WILD-TYPE" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 29(XQ26.2) MUTATED" "AMP PEAK 29(XQ26.2) WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ26.2) MUTATED     12   21
  AMP PEAK 29(XQ26.2) WILD-TYPE   58   86
        clus
vv       AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  FEMALE                          12                            58
  MALE                            21                            86
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 29(XQ26.2) MUTATED                                       4
  AMP PEAK 29(XQ26.2) WILD-TYPE                                    21
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 29(XQ26.2) MUTATED                                                       14
  AMP PEAK 29(XQ26.2) WILD-TYPE                                                     73
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 29(XQ26.2) MUTATED                                           0
  AMP PEAK 29(XQ26.2) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 29(XQ26.2) MUTATED                                                   1
  AMP PEAK 29(XQ26.2) WILD-TYPE                                                 9
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 29(XQ26.2) MUTATED                                                    0
  AMP PEAK 29(XQ26.2) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 29(XQ26.2) MUTATED                                                  4
  AMP PEAK 29(XQ26.2) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 29(XQ26.2) MUTATED                                                                        8
  AMP PEAK 29(XQ26.2) WILD-TYPE                                                                     28
D29V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 29(XQ26.2) MUTATED    1 10 11  9
  AMP PEAK 29(XQ26.2) WILD-TYPE  5 44 53 34
D29V5, multiclass
    clus
vv   AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  T1                           1                             5
  T2                          10                            44
  T3                          11                            53
  T4                           9                            34
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 29(XQ26.2) MUTATED   11 10  8  3
  AMP PEAK 29(XQ26.2) WILD-TYPE 45 51 21 17
D29V6, multiclass
    clus
vv   AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  N0                          11                            45
  N1                          10                            51
  N2                           8                            21
  N3                           3                            17
                               vv
clus                             M0  M1  MX
  AMP PEAK 29(XQ26.2) MUTATED    29   3   1
  AMP PEAK 29(XQ26.2) WILD-TYPE 117  15  12
D29V7, multiclass
    clus
vv   AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  M0                          29                           117
  M1                           3                            15
  MX                           1                            12
                               vv
clus                             I II III IV
  AMP PEAK 29(XQ26.2) MUTATED    6  7  10  7
  AMP PEAK 29(XQ26.2) WILD-TYPE 20 41  48 22
D29V8, multiclass
     clus
vv    AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  I                             6                            20
  II                            7                            41
  III                          10                            48
  IV                            7                            22
D29V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ26.2) MUTATED      0   33
  AMP PEAK 29(XQ26.2) WILD-TYPE    5  139
     clus
vv    AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  NO                            0                             5
  YES                          33                           139
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 29(XQ26.2) MUTATED    23   2   2   5
  AMP PEAK 29(XQ26.2) WILD-TYPE 100   5  10  20
D29V10, multiclass
    clus
vv   AMP PEAK 29(XQ26.2) MUTATED AMP PEAK 29(XQ26.2) WILD-TYPE
  R0                          23                           100
  R1                           2                             5
  R2                           2                            10
  RX                           5                            20
D29V11, continuous

Clustering(30) Variable = Del Peak  1(1p36.11) mutation analysis
D30V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.11) MUTATED   25  6
  DEL PEAK  1(1P36.11) WILD-TYPE 97 12
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            31                            109 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                             6                             12 
$`DEL PEAK  1(1P36.11) MUTATED`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CG-4300 
        5.62         1.35         0.62         0.72         0.69        20.02 
TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 
        3.02        52.96         8.05        54.05        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5719 TCGA-CG-5724 
       47.05        19.07         7.07         1.02         1.02        12.03 
TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6527 
       15.02         4.01         4.54        15.65         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-8099 
        1.68         4.70         4.27         0.62         7.79         1.02 
TCGA-FP-8209 
       59.05 

$`DEL PEAK  1(1P36.11) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.39         0.79         0.72         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.13         0.23         0.10         0.82         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4440 
        0.30         0.07        27.02        15.95         1.02         4.01 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 
       12.03        21.99         1.02         8.98        18.94        12.00 
TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
        0.95        70.06        28.96        31.04        65.10        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 
       21.07         7.99         8.65         3.58         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6818 
        8.19         6.90         0.69         5.95         3.65         4.04 
TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        2.93         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        3.02         3.58         0.56        26.43         6.87         3.55 
TCGA-IP-7968 
        2.53 

  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                          0.62                           0.07 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                         59.05                          72.23 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                          5.62                           1.02 
[1] "0.6 - 59.0 (5.6)" "0.1 - 72.2 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
[1] "hr=" "1.1"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     14   29
  DEL PEAK  1(1P36.11) WILD-TYPE   56   78
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                           14                             56
  MALE                             29                             78
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  1(1P36.11) MUTATED                                       4
  DEL PEAK  1(1P36.11) WILD-TYPE                                    21
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  1(1P36.11) MUTATED                                                       18
  DEL PEAK  1(1P36.11) WILD-TYPE                                                     69
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  1(1P36.11) MUTATED                                           0
  DEL PEAK  1(1P36.11) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  1(1P36.11) MUTATED                                                   3
  DEL PEAK  1(1P36.11) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  1(1P36.11) MUTATED                                                    1
  DEL PEAK  1(1P36.11) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  1(1P36.11) MUTATED                                                  5
  DEL PEAK  1(1P36.11) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  1(1P36.11) MUTATED                                                                       11
  DEL PEAK  1(1P36.11) WILD-TYPE                                                                     25
D30V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  1(1P36.11) MUTATED    1 19 13  6
  DEL PEAK  1(1P36.11) WILD-TYPE  5 35 51 37
D30V5, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  T1                            1                              5
  T2                           19                             35
  T3                           13                             51
  T4                            6                             37
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK  1(1P36.11) MUTATED   13 13  7  5
  DEL PEAK  1(1P36.11) WILD-TYPE 43 48 22 15
D30V6, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  N0                           13                             43
  N1                           13                             48
  N2                            7                             22
  N3                            5                             15
                                vv
clus                              M0  M1  MX
  DEL PEAK  1(1P36.11) MUTATED    35   5   3
  DEL PEAK  1(1P36.11) WILD-TYPE 111  13  10
D30V7, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  M0                           35                            111
  M1                            5                             13
  MX                            3                             10
                                vv
clus                              I II III IV
  DEL PEAK  1(1P36.11) MUTATED    8 11  10  8
  DEL PEAK  1(1P36.11) WILD-TYPE 18 37  48 21
D30V8, multiclass
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  I                              8                             18
  II                            11                             37
  III                           10                             48
  IV                             8                             21
D30V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED      2   41
  DEL PEAK  1(1P36.11) WILD-TYPE    3  131
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  NO                             2                              3
  YES                           41                            131
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK  1(1P36.11) MUTATED   24  4  4  9
  DEL PEAK  1(1P36.11) WILD-TYPE 99  3  8 16
D30V10, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  R0                           24                             99
  R1                            4                              3
  R2                            4                              8
  RX                            9                             16
D30V11, continuous

Clustering(31) Variable = Del Peak  2(1p13.2) mutation analysis
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P13.2) MUTATED   24  2
  DEL PEAK  2(1P13.2) WILD-TYPE 98 16
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           26                           114 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                            2                            16 
$`DEL PEAK  2(1P13.2) MUTATED`
TCGA-BR-7901 TCGA-BR-A4IY TCGA-BR-A4J6 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5802 
        0.95         0.39         0.13         0.72         0.69         0.30 
TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4466 TCGA-CG-4477 
        3.02        52.96        54.05        29.98        18.94         1.02 
TCGA-CG-5724 TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 
       12.03         4.01         4.54        15.65         8.19         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 
        4.14         1.68         4.70         0.62         7.79         0.20 
TCGA-FP-8099 TCGA-IP-7968 
        1.02         2.53 

$`DEL PEAK  2(1P13.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.05         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.79         0.72         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.43         0.23         0.10         0.82         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.07        20.02        27.02        15.95         1.02         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        14.01        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
       70.06        15.02        28.96        31.04        65.10        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 
       21.07         7.99         8.65         3.58         9.80         9.63 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 
        6.90         0.69         5.95         3.65         4.04         2.93 
TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 
        4.27         6.54         2.01        72.23         0.39         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        3.58        59.05         0.56        26.43         6.87         3.55 

  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                         0.13                          0.07 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                        3.515                         1.150 
[1] "0.1 - 54.0 (3.5)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  2(1P13.2) MUTATED"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  2(1P13.2) MUTATED"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  2(1P13.2) MUTATED"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  2(1P13.2) MUTATED"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  2(1P13.2) MUTATED"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  2(1P13.2) MUTATED"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  2(1P13.2) MUTATED" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P13.2) WILD-TYPE"   "DEL PEAK  2(1P13.2) MUTATED" 
[1] "hr=" "2"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.2) MUTATED     11   20
  DEL PEAK  2(1P13.2) WILD-TYPE   59   87
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  FEMALE                          11                            59
  MALE                            20                            87
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  2(1P13.2) MUTATED                                       3
  DEL PEAK  2(1P13.2) WILD-TYPE                                    22
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  2(1P13.2) MUTATED                                                       12
  DEL PEAK  2(1P13.2) WILD-TYPE                                                     75
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  2(1P13.2) MUTATED                                           0
  DEL PEAK  2(1P13.2) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  2(1P13.2) MUTATED                                                   2
  DEL PEAK  2(1P13.2) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  2(1P13.2) MUTATED                                                    1
  DEL PEAK  2(1P13.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  2(1P13.2) MUTATED                                                  4
  DEL PEAK  2(1P13.2) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  2(1P13.2) MUTATED                                                                        8
  DEL PEAK  2(1P13.2) WILD-TYPE                                                                     28
D31V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  2(1P13.2) MUTATED    1 11 12  5
  DEL PEAK  2(1P13.2) WILD-TYPE  5 43 52 38
D31V5, multiclass
    clus
vv   DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  T1                           1                             5
  T2                          11                            43
  T3                          12                            52
  T4                           5                            38
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  2(1P13.2) MUTATED   10  9  6  3
  DEL PEAK  2(1P13.2) WILD-TYPE 46 52 23 17
D31V6, multiclass
    clus
vv   DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  N0                          10                            46
  N1                           9                            52
  N2                           6                            23
  N3                           3                            17
                               vv
clus                             M0  M1  MX
  DEL PEAK  2(1P13.2) MUTATED    24   4   3
  DEL PEAK  2(1P13.2) WILD-TYPE 122  14  10
D31V7, multiclass
    clus
vv   DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  M0                          24                           122
  M1                           4                            14
  MX                           3                            10
                               vv
clus                             I II III IV
  DEL PEAK  2(1P13.2) MUTATED    5 10   8  5
  DEL PEAK  2(1P13.2) WILD-TYPE 21 38  50 24
D31V8, multiclass
     clus
vv    DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  I                             5                            21
  II                           10                            38
  III                           8                            50
  IV                            5                            24
D31V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.2) MUTATED      1   30
  DEL PEAK  2(1P13.2) WILD-TYPE    4  142
     clus
vv    DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  NO                            1                             4
  YES                          30                           142
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  2(1P13.2) MUTATED    19   1   4   3
  DEL PEAK  2(1P13.2) WILD-TYPE 104   6   8  22
D31V10, multiclass
    clus
vv   DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  R0                          19                           104
  R1                           1                             6
  R2                           4                             8
  RX                           3                            22
D31V11, continuous

Clustering(32) Variable = Del Peak  3(1q44) mutation analysis
D32V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  3(1Q44) MUTATED     5   4
  DEL PEAK  3(1Q44) WILD-TYPE 117  14
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                          9                         131 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                          4                          14 
$`DEL PEAK  3(1Q44) MUTATED`
TCGA-CD-5801 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
        0.49         1.02        14.01        18.94         7.07         1.02 
TCGA-CG-5724 TCGA-D7-6519 TCGA-IP-7968 
       12.03        15.65         2.53 

$`DEL PEAK  3(1Q44) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.05         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 
        0.72         0.82         0.69         0.36         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
       20.02         3.02        27.02        15.95        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       54.05         4.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
       21.99         1.02         8.98        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
       72.23         0.39         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       59.05         0.56        26.43         6.87         3.55 

  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                       0.49                        0.07 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                      18.94                       72.23 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                       7.07                        1.22 
[1] "0.5 - 18.9 (7.1)" "0.1 - 72.2 (1.2)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4441                  TCGA-CG-4443 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4441                  TCGA-CG-4443 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4441                  TCGA-CG-4443 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "DEL PEAK  3(1Q44) MUTATED"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8631 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
[1] "hr=" "3.9"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) MUTATED      4    8
  DEL PEAK  3(1Q44) WILD-TYPE   66   99
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  FEMALE                         4                          66
  MALE                           8                          99
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  3(1Q44) MUTATED                                       2
  DEL PEAK  3(1Q44) WILD-TYPE                                    23
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  3(1Q44) MUTATED                                                        5
  DEL PEAK  3(1Q44) WILD-TYPE                                                     82
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  3(1Q44) MUTATED                                           0
  DEL PEAK  3(1Q44) WILD-TYPE                                         1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  3(1Q44) MUTATED                                                   0
  DEL PEAK  3(1Q44) WILD-TYPE                                                10
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  3(1Q44) MUTATED                                                    0
  DEL PEAK  3(1Q44) WILD-TYPE                                                  3
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  3(1Q44) MUTATED                                                  0
  DEL PEAK  3(1Q44) WILD-TYPE                                               10
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  3(1Q44) MUTATED                                                                        4
  DEL PEAK  3(1Q44) WILD-TYPE                                                                     32
D32V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  3(1Q44) MUTATED    0  4  7  0
  DEL PEAK  3(1Q44) WILD-TYPE  6 50 57 43
D32V5, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  T1                         0                           6
  T2                         4                          50
  T3                         7                          57
  T4                         0                          43
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK  3(1Q44) MUTATED    2  4  3  2
  DEL PEAK  3(1Q44) WILD-TYPE 54 57 26 18
D32V6, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  N0                         2                          54
  N1                         4                          57
  N2                         3                          26
  N3                         2                          18
                             vv
clus                           M0  M1  MX
  DEL PEAK  3(1Q44) MUTATED     9   2   1
  DEL PEAK  3(1Q44) WILD-TYPE 137  16  12
D32V7, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  M0                         9                         137
  M1                         2                          16
  MX                         1                          12
                             vv
clus                           I II III IV
  DEL PEAK  3(1Q44) MUTATED    2  2   4  3
  DEL PEAK  3(1Q44) WILD-TYPE 24 46  54 26
D32V8, multiclass
     clus
vv    DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  I                           2                          24
  II                          2                          46
  III                         4                          54
  IV                          3                          26
D32V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) MUTATED      0   12
  DEL PEAK  3(1Q44) WILD-TYPE    5  160
     clus
vv    DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  NO                          0                           5
  YES                        12                         160
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK  3(1Q44) MUTATED     6   1   2   1
  DEL PEAK  3(1Q44) WILD-TYPE 117   6  10  24
D32V10, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  R0                         6                         117
  R1                         1                           6
  R2                         2                          10
  RX                         1                          24
D32V11, continuous

Clustering(33) Variable = Del Peak  4(2q32.1) mutation analysis
D33V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  4(2Q32.1) MUTATED     9   5
  DEL PEAK  4(2Q32.1) WILD-TYPE 113  13
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           14                           126 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                            5                            13 
$`DEL PEAK  4(2Q32.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-CG-4300 TCGA-CG-4444 TCGA-CG-4462 TCGA-CG-4472 
        1.35         0.62        20.02        47.05         1.02        12.00 
TCGA-CG-5720 TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-5578 TCGA-D7-5579 TCGA-EQ-8122 
        0.99        12.03        15.02         3.58         4.54         7.79 
TCGA-FP-8209 TCGA-HJ-7597 
       59.05        26.43 

$`DEL PEAK  4(2Q32.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.92         0.39         0.79         0.72         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 
        0.43         0.13         0.23         0.10         0.72         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.69         0.36         0.49         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        14.01        29.98        19.07        12.03        21.99 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98        18.94         7.07         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        7.99         8.65         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        6.90         0.69         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.58         1.02         0.56         6.87         3.55         2.53 

  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                         0.62                          0.07 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                        59.05                         72.23 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                        9.895                         1.100 
[1] "0.6 - 59.0 (9.9)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
[1] "hr=" "1.7"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) MUTATED      7   13
  DEL PEAK  4(2Q32.1) WILD-TYPE   63   94
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  FEMALE                           7                            63
  MALE                            13                            94
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                       3
  DEL PEAK  4(2Q32.1) WILD-TYPE                                    22
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  4(2Q32.1) MUTATED                                                        9
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                     78
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                           1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                                   2
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                                    0
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                                  1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                9
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  4(2Q32.1) MUTATED                                                                        1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                                     35
D33V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  4(2Q32.1) MUTATED    0  6 10  2
  DEL PEAK  4(2Q32.1) WILD-TYPE  6 48 54 41
D33V5, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  T1                           0                             6
  T2                           6                            48
  T3                          10                            54
  T4                           2                            41
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  4(2Q32.1) MUTATED    5  5  4  4
  DEL PEAK  4(2Q32.1) WILD-TYPE 51 56 25 16
D33V6, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  N0                           5                            51
  N1                           5                            56
  N2                           4                            25
  N3                           4                            16
                               vv
clus                             M0  M1  MX
  DEL PEAK  4(2Q32.1) MUTATED    15   2   3
  DEL PEAK  4(2Q32.1) WILD-TYPE 131  16  10
D33V7, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  M0                          15                           131
  M1                           2                            16
  MX                           3                            10
                               vv
clus                             I II III IV
  DEL PEAK  4(2Q32.1) MUTATED    4  6   3  4
  DEL PEAK  4(2Q32.1) WILD-TYPE 22 42  55 25
D33V8, multiclass
     clus
vv    DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  I                             4                            22
  II                            6                            42
  III                           3                            55
  IV                            4                            25
D33V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) MUTATED      1   19
  DEL PEAK  4(2Q32.1) WILD-TYPE    4  153
     clus
vv    DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  NO                            1                             4
  YES                          19                           153
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  4(2Q32.1) MUTATED    12   2   2   3
  DEL PEAK  4(2Q32.1) WILD-TYPE 111   5  10  22
D33V10, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  R0                          12                           111
  R1                           2                             5
  R2                           2                            10
  RX                           3                            22
D33V11, continuous

Clustering(34) Variable = Del Peak  5(2q37.2) mutation analysis
D34V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  5(2Q37.2) MUTATED    18   2
  DEL PEAK  5(2Q37.2) WILD-TYPE 104  16
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                           20                           120 
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                            2                            16 
$`DEL PEAK  5(2Q37.2) MUTATED`
TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7704 TCGA-BR-7901 TCGA-CD-5800 TCGA-CG-4300 
        0.62         1.22         1.25         0.95         0.36        20.02 
TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4449 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5719 
        8.05        14.01        19.07        18.94        12.00         1.02 
TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6822 TCGA-EQ-8122 
        3.58        15.65         1.68         3.65         4.27         7.79 
TCGA-FP-8099 TCGA-HJ-7597 
        1.02        26.43 

$`DEL PEAK  5(2Q37.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.79         0.72         0.79         0.53         0.43         0.13 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        0.23         0.10         0.72         0.82         0.69         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.30         0.07         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 
       52.96        54.05         4.01        29.98        47.05        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
        4.01        55.04        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 
        6.61         4.14         4.70         4.04         2.93         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.58        59.05         0.56         6.87         3.55         2.53 

  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                         0.36                          0.07 
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                        26.43                         72.23 
  DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE 
                        3.960                         1.065 
[1] "0.4 - 26.4 (4.0)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  5(2Q37.2) MUTATED"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  5(2Q37.2) MUTATED"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  5(2Q37.2) MUTATED"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  5(2Q37.2) WILD-TYPE"   "DEL PEAK  5(2Q37.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q37.2) MUTATED" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
[1] "hr=" "1.6"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.2) MUTATED     11   12
  DEL PEAK  5(2Q37.2) WILD-TYPE   59   95
        clus
vv       DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  FEMALE                          11                            59
  MALE                            12                            95
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  5(2Q37.2) MUTATED                                       2
  DEL PEAK  5(2Q37.2) WILD-TYPE                                    23
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  5(2Q37.2) MUTATED                                                        6
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                     81
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  5(2Q37.2) MUTATED                                           1
  DEL PEAK  5(2Q37.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  5(2Q37.2) MUTATED                                                   1
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                 9
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  5(2Q37.2) MUTATED                                                    1
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  5(2Q37.2) MUTATED                                                  4
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  5(2Q37.2) MUTATED                                                                        7
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                                     29
D34V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  5(2Q37.2) MUTATED    1 10  9  3
  DEL PEAK  5(2Q37.2) WILD-TYPE  5 44 55 40
D34V5, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  T1                           1                             5
  T2                          10                            44
  T3                           9                            55
  T4                           3                            40
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  5(2Q37.2) MUTATED   11  6  5  1
  DEL PEAK  5(2Q37.2) WILD-TYPE 45 55 24 19
D34V6, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  N0                          11                            45
  N1                           6                            55
  N2                           5                            24
  N3                           1                            19
                               vv
clus                             M0  M1  MX
  DEL PEAK  5(2Q37.2) MUTATED    18   1   4
  DEL PEAK  5(2Q37.2) WILD-TYPE 128  17   9
D34V7, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  M0                          18                           128
  M1                           1                            17
  MX                           4                             9
                               vv
clus                             I II III IV
  DEL PEAK  5(2Q37.2) MUTATED    6  8   7  2
  DEL PEAK  5(2Q37.2) WILD-TYPE 20 40  51 27
D34V8, multiclass
     clus
vv    DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  I                             6                            20
  II                            8                            40
  III                           7                            51
  IV                            2                            27
D34V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.2) MUTATED      1   22
  DEL PEAK  5(2Q37.2) WILD-TYPE    4  150
     clus
vv    DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  NO                            1                             4
  YES                          22                           150
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  5(2Q37.2) MUTATED    20   1   0   0
  DEL PEAK  5(2Q37.2) WILD-TYPE 103   6  12  25
D34V10, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) MUTATED DEL PEAK  5(2Q37.2) WILD-TYPE
  R0                          20                           103
  R1                           1                             6
  R2                           0                            12
  RX                           0                            25
D34V11, continuous

Clustering(35) Variable = Del Peak  6(3p26.1) mutation analysis
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(3P26.1) MUTATED   34  5
  DEL PEAK  6(3P26.1) WILD-TYPE 88 13
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                           39                           101 
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                            5                            13 
$`DEL PEAK  6(3P26.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6803 TCGA-BR-7715 TCGA-BR-7716 
        1.35         0.62         1.71         0.66         1.05         0.82 
TCGA-BR-7957 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.69         0.39         0.72         0.53         0.23         0.72 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4437 
        0.69         0.49        20.02         3.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4466 
       54.05         4.01        14.01        47.05        12.03        18.94 
TCGA-CG-5718 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5578 TCGA-D7-6525 
        1.02        70.06        15.02         4.01         3.58         5.95 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-5647 TCGA-FP-7829 TCGA-FP-7916 
        6.61         1.68         4.70         0.62         0.20         3.02 
TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7806 
        1.02         0.56         6.87 

$`DEL PEAK  6(3P26.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.82         0.62         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.25         0.13         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.95         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.59         0.92         0.79         0.79         0.43         0.13 
TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 
        0.10         0.82         0.36         0.30         0.07        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 
       15.95         1.02        29.98        19.07        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5724 
        6.94         1.02         0.99         5.98         0.95        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        8.65         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 
        6.90         0.69         4.14         3.65         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        4.27         7.79         6.54         2.01        72.23         0.39 
TCGA-FP-7998 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
        3.58        59.05        26.43         3.55         2.53 

  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                        70.06                         72.23 
  DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE 
                         1.71                          1.18 
[1] "0.2 - 70.1 (1.7)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  6(3P26.1) MUTATED" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  6(3P26.1) MUTATED"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  6(3P26.1) WILD-TYPE"   "DEL PEAK  6(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.1) MUTATED     17   30
  DEL PEAK  6(3P26.1) WILD-TYPE   53   77
        clus
vv       DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  FEMALE                          17                            53
  MALE                            30                            77
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  6(3P26.1) MUTATED                                       5
  DEL PEAK  6(3P26.1) WILD-TYPE                                    20
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  6(3P26.1) MUTATED                                                       24
  DEL PEAK  6(3P26.1) WILD-TYPE                                                     63
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  6(3P26.1) MUTATED                                           0
  DEL PEAK  6(3P26.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  6(3P26.1) MUTATED                                                   2
  DEL PEAK  6(3P26.1) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  6(3P26.1) MUTATED                                                    0
  DEL PEAK  6(3P26.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  6(3P26.1) MUTATED                                                  4
  DEL PEAK  6(3P26.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  6(3P26.1) MUTATED                                                                       11
  DEL PEAK  6(3P26.1) WILD-TYPE                                                                     25
D35V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  6(3P26.1) MUTATED    0 15 19 10
  DEL PEAK  6(3P26.1) WILD-TYPE  6 39 45 33
D35V5, multiclass
    clus
vv   DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  T1                           0                             6
  T2                          15                            39
  T3                          19                            45
  T4                          10                            33
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  6(3P26.1) MUTATED   10 16 12  6
  DEL PEAK  6(3P26.1) WILD-TYPE 46 45 17 14
D35V6, multiclass
    clus
vv   DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  N0                          10                            46
  N1                          16                            45
  N2                          12                            17
  N3                           6                            14
                               vv
clus                             M0  M1  MX
  DEL PEAK  6(3P26.1) MUTATED    37   5   5
  DEL PEAK  6(3P26.1) WILD-TYPE 109  13   8
D35V7, multiclass
    clus
vv   DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  M0                          37                           109
  M1                           5                            13
  MX                           5                             8
                               vv
clus                             I II III IV
  DEL PEAK  6(3P26.1) MUTATED    5 12  19  7
  DEL PEAK  6(3P26.1) WILD-TYPE 21 36  39 22
D35V8, multiclass
     clus
vv    DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  I                             5                            21
  II                           12                            36
  III                          19                            39
  IV                            7                            22
D35V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.1) MUTATED      1   46
  DEL PEAK  6(3P26.1) WILD-TYPE    4  126
     clus
vv    DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  NO                            1                             4
  YES                          46                           126
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  6(3P26.1) MUTATED   35  0  4  5
  DEL PEAK  6(3P26.1) WILD-TYPE 88  7  8 20
D35V10, multiclass
    clus
vv   DEL PEAK  6(3P26.1) MUTATED DEL PEAK  6(3P26.1) WILD-TYPE
  R0                          35                            88
  R1                           0                             7
  R2                           4                             8
  RX                           5                            20
D35V11, continuous

Clustering(36) Variable = Del Peak  7(3p14.2) mutation analysis
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(3P14.2) MUTATED   44  7
  DEL PEAK  7(3P14.2) WILD-TYPE 78 11
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           51                            89 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                            7                            11 
$`DEL PEAK  7(3P14.2) MUTATED`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6803 TCGA-BR-6852 
        5.62         1.35         0.62         1.71         0.66         0.26 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-A4IY 
        1.05         0.82         0.16         0.95         0.69         0.39 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 
        0.72         0.53         0.23         0.72         0.69         0.36 
TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
        0.49        20.02         3.02        15.95        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4466 
       54.05         4.01        14.01        47.05        12.03        18.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5577 
        1.02         1.02        12.03        15.02         4.01         8.65 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
       15.65         9.63         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 
        4.70         4.27         0.62         0.20         3.02         1.02 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 
        0.56        26.43         6.87 

$`DEL PEAK  7(3P14.2) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        0.62         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.76         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.69         4.54         0.99         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.76         0.20         0.59         0.92         0.79         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5802 TCGA-CD-5803 
        0.43         0.13         0.10         0.82         0.30         0.07 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 
       27.02         1.02        29.98        19.07        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        6.94         0.99         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 
       31.04        65.10        55.04        21.07         7.99         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 
        4.54         9.80         8.19         6.90         0.69         3.65 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.04         2.93         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7998 TCGA-FP-8209 TCGA-IN-7808 TCGA-IP-7968 
        0.39         3.58        59.05         3.55         2.53 

  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                         0.16                          0.07 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                         3.02                          1.12 
[1] "0.2 - 54.0 (3.0)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
[1] "hr=" "1.2"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) MUTATED     25   33
  DEL PEAK  7(3P14.2) WILD-TYPE   45   74
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  FEMALE                          25                            45
  MALE                            33                            74
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  7(3P14.2) MUTATED                                       8
  DEL PEAK  7(3P14.2) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  7(3P14.2) MUTATED                                                       26
  DEL PEAK  7(3P14.2) WILD-TYPE                                                     61
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  7(3P14.2) MUTATED                                           1
  DEL PEAK  7(3P14.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  7(3P14.2) MUTATED                                                   2
  DEL PEAK  7(3P14.2) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  7(3P14.2) MUTATED                                                    2
  DEL PEAK  7(3P14.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  7(3P14.2) MUTATED                                                  6
  DEL PEAK  7(3P14.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  7(3P14.2) MUTATED                                                                       12
  DEL PEAK  7(3P14.2) WILD-TYPE                                                                     24
D36V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  7(3P14.2) MUTATED    0 21 24 12
  DEL PEAK  7(3P14.2) WILD-TYPE  6 33 40 31
D36V5, multiclass
    clus
vv   DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  T1                           0                             6
  T2                          21                            33
  T3                          24                            40
  T4                          12                            31
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  7(3P14.2) MUTATED   16 21 12  8
  DEL PEAK  7(3P14.2) WILD-TYPE 40 40 17 12
D36V6, multiclass
    clus
vv   DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  N0                          16                            40
  N1                          21                            40
  N2                          12                            17
  N3                           8                            12
                               vv
clus                             M0  M1  MX
  DEL PEAK  7(3P14.2) MUTATED    46   7   5
  DEL PEAK  7(3P14.2) WILD-TYPE 100  11   8
D36V7, multiclass
    clus
vv   DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  M0                          46                           100
  M1                           7                            11
  MX                           5                             8
                               vv
clus                             I II III IV
  DEL PEAK  7(3P14.2) MUTATED    7 15  26  9
  DEL PEAK  7(3P14.2) WILD-TYPE 19 33  32 20
D36V8, multiclass
     clus
vv    DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  I                             7                            19
  II                           15                            33
  III                          26                            32
  IV                            9                            20
D36V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) MUTATED      2   56
  DEL PEAK  7(3P14.2) WILD-TYPE    3  116
     clus
vv    DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  NO                            2                             3
  YES                          56                           116
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  7(3P14.2) MUTATED   46  0  5  3
  DEL PEAK  7(3P14.2) WILD-TYPE 77  7  7 22
D36V10, multiclass
    clus
vv   DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  R0                          46                            77
  R1                           0                             7
  R2                           5                             7
  RX                           3                            22
D36V11, continuous

Clustering(37) Variable = Del Peak  8(3q26.31) mutation analysis
D37V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  8(3Q26.31) MUTATED    12   2
  DEL PEAK  8(3Q26.31) WILD-TYPE 110  16
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                            14                            126 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                             2                             16 
$`DEL PEAK  8(3Q26.31) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7715 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J8 
        1.35         0.62         1.05         0.39         0.72         0.23 
TCGA-BR-A4PF TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4466 TCGA-D7-5578 TCGA-D7-6526 
        0.72        54.05        14.01        18.94         3.58         6.61 
TCGA-FP-8099 TCGA-IN-7806 
        1.02         6.87 

$`DEL PEAK  8(3Q26.31) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 
        0.79         0.79         0.53         0.43         0.13         0.10 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        8.05         4.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        8.65         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         0.69         5.95         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        4.70         4.04         2.93         4.27         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
        3.58        59.05         0.56        26.43         3.55         2.53 

  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                          0.23                           0.07 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE 
                         1.200                          1.235 
[1] "0.2 - 54.0 (1.2)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK  8(3Q26.31) MUTATED" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  8(3Q26.31) WILD-TYPE"   "DEL PEAK  8(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.3"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q26.31) MUTATED      6   12
  DEL PEAK  8(3Q26.31) WILD-TYPE   64   95
        clus
vv       DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  FEMALE                            6                             64
  MALE                             12                             95
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  8(3Q26.31) MUTATED                                       1
  DEL PEAK  8(3Q26.31) WILD-TYPE                                    24
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  8(3Q26.31) MUTATED                                                       12
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                     75
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  8(3Q26.31) MUTATED                                           0
  DEL PEAK  8(3Q26.31) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  8(3Q26.31) MUTATED                                                   0
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                10
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  8(3Q26.31) MUTATED                                                    0
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  8(3Q26.31) MUTATED                                                  2
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  8(3Q26.31) MUTATED                                                                        3
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                                     33
D37V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  8(3Q26.31) MUTATED    0  3  9  4
  DEL PEAK  8(3Q26.31) WILD-TYPE  6 51 55 39
D37V5, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  T1                            0                              6
  T2                            3                             51
  T3                            9                             55
  T4                            4                             39
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK  8(3Q26.31) MUTATED    6  4  5  1
  DEL PEAK  8(3Q26.31) WILD-TYPE 50 57 24 19
D37V6, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  N0                            6                             50
  N1                            4                             57
  N2                            5                             24
  N3                            1                             19
                                vv
clus                              M0  M1  MX
  DEL PEAK  8(3Q26.31) MUTATED    15   0   3
  DEL PEAK  8(3Q26.31) WILD-TYPE 131  18  10
D37V7, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  M0                           15                            131
  M1                            0                             18
  MX                            3                             10
                                vv
clus                              I II III IV
  DEL PEAK  8(3Q26.31) MUTATED    2  6   6  1
  DEL PEAK  8(3Q26.31) WILD-TYPE 24 42  52 28
D37V8, multiclass
     clus
vv    DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  I                              2                             24
  II                             6                             42
  III                            6                             52
  IV                             1                             28
D37V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q26.31) MUTATED      1   17
  DEL PEAK  8(3Q26.31) WILD-TYPE    4  155
     clus
vv    DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  NO                             1                              4
  YES                           17                            155
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK  8(3Q26.31) MUTATED    15   0   0   3
  DEL PEAK  8(3Q26.31) WILD-TYPE 108   7  12  22
D37V10, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) MUTATED DEL PEAK  8(3Q26.31) WILD-TYPE
  R0                           15                            108
  R1                            0                              7
  R2                            0                             12
  RX                            3                             22
D37V11, continuous

Clustering(38) Variable = Del Peak  9(4q22.1) mutation analysis
D38V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(4Q22.1) MUTATED   45  8
  DEL PEAK  9(4Q22.1) WILD-TYPE 77 10
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           53                            87 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                            8                            10 
$`DEL PEAK  9(4Q22.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7716 TCGA-BR-7717 
        1.35         0.62         1.12         0.66         0.82         0.69 
TCGA-BR-7957 TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5799 
        0.69         0.72         0.13         0.23         0.72         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 
        0.36         0.30         0.07        20.02         3.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        8.05        54.05         4.01        47.05        19.07        12.03 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5720 TCGA-CG-5724 TCGA-CG-5727 
       18.94         7.07         1.02         0.99        12.03        31.04 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
        4.01        55.04         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 
       15.65         6.61         4.14         1.68         3.65         4.04 
TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        2.93         0.62         7.79        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8209 TCGA-IN-7806 TCGA-IP-7968 
        3.02         1.02        59.05         6.87         2.53 

$`DEL PEAK  9(4Q22.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.66         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.25         0.13         1.05         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.95         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4304 TCGA-CG-4305 
        0.43         0.10         0.82         0.49        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        1.02        14.01        29.98        21.99         1.02         8.98 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
       12.00         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 
        5.98         0.95        70.06        15.02        28.96        65.10 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
       21.07         7.99         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6817 TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7998 
        5.95         4.70         4.27         6.54         2.01         3.58 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
        0.56        26.43         3.55 

  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                         3.58                          1.02 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
[1] "hr=" "1.4"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) MUTATED     25   41
  DEL PEAK  9(4Q22.1) WILD-TYPE   45   66
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  FEMALE                          25                            45
  MALE                            41                            66
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  9(4Q22.1) MUTATED                                       9
  DEL PEAK  9(4Q22.1) WILD-TYPE                                    16
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  9(4Q22.1) MUTATED                                                       28
  DEL PEAK  9(4Q22.1) WILD-TYPE                                                     59
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  9(4Q22.1) MUTATED                                           0
  DEL PEAK  9(4Q22.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  9(4Q22.1) MUTATED                                                   5
  DEL PEAK  9(4Q22.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  9(4Q22.1) MUTATED                                                    2
  DEL PEAK  9(4Q22.1) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  9(4Q22.1) MUTATED                                                  7
  DEL PEAK  9(4Q22.1) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  9(4Q22.1) MUTATED                                                                       13
  DEL PEAK  9(4Q22.1) WILD-TYPE                                                                     23
D38V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  9(4Q22.1) MUTATED    0 25 26 10
  DEL PEAK  9(4Q22.1) WILD-TYPE  6 29 38 33
D38V5, multiclass
    clus
vv   DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  T1                           0                             6
  T2                          25                            29
  T3                          26                            38
  T4                          10                            33
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  9(4Q22.1) MUTATED   18 22 10 12
  DEL PEAK  9(4Q22.1) WILD-TYPE 38 39 19  8
D38V6, multiclass
    clus
vv   DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  N0                          18                            38
  N1                          22                            39
  N2                          10                            19
  N3                          12                             8
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(4Q22.1) MUTATED   54  6  6
  DEL PEAK  9(4Q22.1) WILD-TYPE 92 12  7
D38V7, multiclass
    clus
vv   DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  M0                          54                            92
  M1                           6                            12
  MX                           6                             7
                               vv
clus                             I II III IV
  DEL PEAK  9(4Q22.1) MUTATED    9 19  18 14
  DEL PEAK  9(4Q22.1) WILD-TYPE 17 29  40 15
D38V8, multiclass
     clus
vv    DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  I                             9                            17
  II                           19                            29
  III                          18                            40
  IV                           14                            15
D38V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) MUTATED      4   62
  DEL PEAK  9(4Q22.1) WILD-TYPE    1  110
     clus
vv    DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  NO                            4                             1
  YES                          62                           110
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  9(4Q22.1) MUTATED   41  5  5  8
  DEL PEAK  9(4Q22.1) WILD-TYPE 82  2  7 17
D38V10, multiclass
    clus
vv   DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  R0                          41                            82
  R1                           5                             2
  R2                           5                             7
  RX                           8                            17
D38V11, continuous

Clustering(39) Variable = Del Peak 10(4q34.3) mutation analysis
D39V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(4Q34.3) MUTATED   45  7
  DEL PEAK 10(4Q34.3) WILD-TYPE 77 11
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                           52                            88 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                            7                            11 
$`DEL PEAK 10(4Q34.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7197 
        1.35         0.62         1.71         1.22         0.66         1.48 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-A4J1 
        1.05         0.69         4.54         0.99         0.69         0.72 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        0.13         0.23         0.72         0.69         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        0.07        20.02        27.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 
        4.01        47.05        19.07        12.03         8.98        18.94 
TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5725 TCGA-CG-5727 TCGA-D7-5578 
        1.02         6.94         1.02        15.02        31.04         3.58 
TCGA-D7-6518 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        9.80         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 
        4.70         2.93         4.27         0.62         7.79         0.20 
TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8209 TCGA-IP-7968 
        3.02         1.02        59.05         2.53 

$`DEL PEAK 10(4Q34.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.82         0.62         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.76         0.26         1.22         0.46         1.25         0.13 
TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.82         0.16         0.95         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.76         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 
        0.79         0.53         0.43         0.10         0.82         0.49 
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 
        3.02        15.95         1.02        14.01        29.98        21.99 
TCGA-CG-4462 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5718 
        1.02         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        12.03        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        4.54        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6818 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7998 
        4.04         6.54         2.01        72.23         0.39         3.58 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        0.56        26.43         6.87         3.55 

  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                        59.05                         72.23 
  DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE 
                        2.975                         1.020 
[1] "0.1 - 59.0 (3.0)" "0.1 - 72.2 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 10(4Q34.3) MUTATED"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 10(4Q34.3) MUTATED" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 10(4Q34.3) WILD-TYPE" "DEL PEAK 10(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4Q34.3) WILD-TYPE"   "DEL PEAK 10(4Q34.3) MUTATED" 
[1] "hr=" "1.1"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q34.3) MUTATED     23   41
  DEL PEAK 10(4Q34.3) WILD-TYPE   47   66
        clus
vv       DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  FEMALE                          23                            47
  MALE                            41                            66
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 10(4Q34.3) MUTATED                                       6
  DEL PEAK 10(4Q34.3) WILD-TYPE                                    19
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 10(4Q34.3) MUTATED                                                       29
  DEL PEAK 10(4Q34.3) WILD-TYPE                                                     58
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 10(4Q34.3) MUTATED                                           0
  DEL PEAK 10(4Q34.3) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 10(4Q34.3) MUTATED                                                   4
  DEL PEAK 10(4Q34.3) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 10(4Q34.3) MUTATED                                                    2
  DEL PEAK 10(4Q34.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 10(4Q34.3) MUTATED                                                  8
  DEL PEAK 10(4Q34.3) WILD-TYPE                                                2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 10(4Q34.3) MUTATED                                                                       12
  DEL PEAK 10(4Q34.3) WILD-TYPE                                                                     24
D39V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 10(4Q34.3) MUTATED    0 23 27  9
  DEL PEAK 10(4Q34.3) WILD-TYPE  6 31 37 34
D39V5, multiclass
    clus
vv   DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  T1                           0                             6
  T2                          23                            31
  T3                          27                            37
  T4                           9                            34
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 10(4Q34.3) MUTATED   21 17 13  9
  DEL PEAK 10(4Q34.3) WILD-TYPE 35 44 16 11
D39V6, multiclass
    clus
vv   DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  N0                          21                            35
  N1                          17                            44
  N2                          13                            16
  N3                           9                            11
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(4Q34.3) MUTATED   54  5  5
  DEL PEAK 10(4Q34.3) WILD-TYPE 92 13  8
D39V7, multiclass
    clus
vv   DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  M0                          54                            92
  M1                           5                            13
  MX                           5                             8
                               vv
clus                             I II III IV
  DEL PEAK 10(4Q34.3) MUTATED    9 24  16  9
  DEL PEAK 10(4Q34.3) WILD-TYPE 17 24  42 20
D39V8, multiclass
     clus
vv    DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  I                             9                            17
  II                           24                            24
  III                          16                            42
  IV                            9                            20
D39V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q34.3) MUTATED      3   61
  DEL PEAK 10(4Q34.3) WILD-TYPE    2  111
     clus
vv    DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  NO                            3                             2
  YES                          61                           111
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 10(4Q34.3) MUTATED   44  4  3  6
  DEL PEAK 10(4Q34.3) WILD-TYPE 79  3  9 19
D39V10, multiclass
    clus
vv   DEL PEAK 10(4Q34.3) MUTATED DEL PEAK 10(4Q34.3) WILD-TYPE
  R0                          44                            79
  R1                           4                             3
  R2                           3                             9
  RX                           6                            19
D39V11, continuous

Clustering(40) Variable = Del Peak 11(5q11.2) mutation analysis
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(5Q11.2) MUTATED   34  6
  DEL PEAK 11(5Q11.2) WILD-TYPE 88 12
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           40                           100 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                            6                            12 
$`DEL PEAK 11(5Q11.2) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7901 
        1.35         0.62         1.22         1.05         0.82         0.95 
TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4304 
        0.72         0.72         0.36         0.49         0.30        27.02 
TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       52.96         4.01        14.01        47.05        19.07        12.03 
TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5579 
       18.94         1.02         1.02        15.02        55.04         4.54 
TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        9.63         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 
        4.70         2.93         4.27         0.62         7.79        72.23 
TCGA-FP-7829 TCGA-FP-8631 TCGA-IN-7806 TCGA-IP-7968 
        0.20         0.56         6.87         2.53 

$`DEL PEAK 11(5Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 
        0.53         0.43         0.13         0.23         0.10         0.82 
TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 
        0.69         0.07        20.02         3.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        8.05        54.05        29.98        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        12.03        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        3.58         9.80        15.65         8.19         6.90         0.69 
TCGA-D7-6818 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        4.04         6.54         2.01         0.39         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7808 
        1.02        59.05        26.43         3.55 

  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                         3.83                          1.02 
[1] "0.2 - 72.2 (3.8)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
[1] "hr=" "1.3"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) MUTATED     17   31
  DEL PEAK 11(5Q11.2) WILD-TYPE   53   76
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  FEMALE                          17                            53
  MALE                            31                            76
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 11(5Q11.2) MUTATED                                       2
  DEL PEAK 11(5Q11.2) WILD-TYPE                                    23
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 11(5Q11.2) MUTATED                                                       21
  DEL PEAK 11(5Q11.2) WILD-TYPE                                                     66
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 11(5Q11.2) MUTATED                                           0
  DEL PEAK 11(5Q11.2) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 11(5Q11.2) MUTATED                                                   5
  DEL PEAK 11(5Q11.2) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 11(5Q11.2) MUTATED                                                    2
  DEL PEAK 11(5Q11.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 11(5Q11.2) MUTATED                                                  7
  DEL PEAK 11(5Q11.2) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 11(5Q11.2) MUTATED                                                                        9
  DEL PEAK 11(5Q11.2) WILD-TYPE                                                                     27
D40V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 11(5Q11.2) MUTATED    1 21 19  4
  DEL PEAK 11(5Q11.2) WILD-TYPE  5 33 45 39
D40V5, multiclass
    clus
vv   DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  T1                           1                             5
  T2                          21                            33
  T3                          19                            45
  T4                           4                            39
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 11(5Q11.2) MUTATED   12 17 11  5
  DEL PEAK 11(5Q11.2) WILD-TYPE 44 44 18 15
D40V6, multiclass
    clus
vv   DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  N0                          12                            44
  N1                          17                            44
  N2                          11                            18
  N3                           5                            15
                               vv
clus                             M0  M1  MX
  DEL PEAK 11(5Q11.2) MUTATED    43   2   3
  DEL PEAK 11(5Q11.2) WILD-TYPE 103  16  10
D40V7, multiclass
    clus
vv   DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  M0                          43                           103
  M1                           2                            16
  MX                           3                            10
                               vv
clus                             I II III IV
  DEL PEAK 11(5Q11.2) MUTATED    8 13  18  5
  DEL PEAK 11(5Q11.2) WILD-TYPE 18 35  40 24
D40V8, multiclass
     clus
vv    DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  I                             8                            18
  II                           13                            35
  III                          18                            40
  IV                            5                            24
D40V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) MUTATED      2   46
  DEL PEAK 11(5Q11.2) WILD-TYPE    3  126
     clus
vv    DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  NO                            2                             3
  YES                          46                           126
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 11(5Q11.2) MUTATED   32  4  2  5
  DEL PEAK 11(5Q11.2) WILD-TYPE 91  3 10 20
D40V10, multiclass
    clus
vv   DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  R0                          32                            91
  R1                           4                             3
  R2                           2                            10
  RX                           5                            20
D40V11, continuous

Clustering(41) Variable = Del Peak 12(6p25.3) mutation analysis
D41V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(6P25.3) MUTATED   27  4
  DEL PEAK 12(6P25.3) WILD-TYPE 95 14
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                           31                           109 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                            4                            14 
$`DEL PEAK 12(6P25.3) MUTATED`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7716 TCGA-BR-7901 
        5.62         1.35         1.22         0.66         0.82         0.95 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5800 TCGA-CD-5802 
        0.39         0.72         0.23         0.72         0.36         0.30 
TCGA-CG-4437 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5727 
        8.05        18.94         1.02         1.02        12.03        31.04 
TCGA-CG-5728 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       65.10        55.04         3.58         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6822 TCGA-FP-8209 
        8.19         5.95         1.68         3.65         4.27        59.05 
TCGA-HJ-7597 
       26.43 

$`DEL PEAK 12(6P25.3) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.62         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.25         0.13         1.05         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        0.43         0.13         0.10         0.82         0.69         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       52.96        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 
       12.00         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5730 
        5.98         0.95        70.06        15.02        28.96         4.01 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6522 TCGA-D7-6524 
       21.07         7.99         8.65         4.54         6.90         0.69 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 
        6.61         4.14         4.70         4.04         2.93         0.62 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        7.79         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7806 TCGA-IN-7808 
        3.02         3.58         1.02         0.56         6.87         3.55 
TCGA-IP-7968 
        2.53 

  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                         0.23                          0.07 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                        65.10                         72.23 
  DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE 
                         3.65                          1.08 
[1] "0.2 - 65.1 (3.6)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 12(6P25.3) MUTATED"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 12(6P25.3) WILD-TYPE"   "DEL PEAK 12(6P25.3) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 12(6P25.3) MUTATED" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
[1] "hr=" "1.6"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED     18   21
  DEL PEAK 12(6P25.3) WILD-TYPE   52   86
        clus
vv       DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  FEMALE                          18                            52
  MALE                            21                            86
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 12(6P25.3) MUTATED                                       8
  DEL PEAK 12(6P25.3) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 12(6P25.3) MUTATED                                                       15
  DEL PEAK 12(6P25.3) WILD-TYPE                                                     72
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 12(6P25.3) MUTATED                                           1
  DEL PEAK 12(6P25.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 12(6P25.3) MUTATED                                                   1
  DEL PEAK 12(6P25.3) WILD-TYPE                                                 9
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 12(6P25.3) MUTATED                                                    1
  DEL PEAK 12(6P25.3) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 12(6P25.3) MUTATED                                                  6
  DEL PEAK 12(6P25.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 12(6P25.3) MUTATED                                                                        7
  DEL PEAK 12(6P25.3) WILD-TYPE                                                                     29
D41V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 12(6P25.3) MUTATED    0 17 14  6
  DEL PEAK 12(6P25.3) WILD-TYPE  6 37 50 37
D41V5, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  T1                           0                             6
  T2                          17                            37
  T3                          14                            50
  T4                           6                            37
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 12(6P25.3) MUTATED   14  8  7  5
  DEL PEAK 12(6P25.3) WILD-TYPE 42 53 22 15
D41V6, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  N0                          14                            42
  N1                           8                            53
  N2                           7                            22
  N3                           5                            15
                               vv
clus                             M0  M1  MX
  DEL PEAK 12(6P25.3) MUTATED    33   2   4
  DEL PEAK 12(6P25.3) WILD-TYPE 113  16   9
D41V7, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  M0                          33                           113
  M1                           2                            16
  MX                           4                             9
                               vv
clus                             I II III IV
  DEL PEAK 12(6P25.3) MUTATED    7  9  12  6
  DEL PEAK 12(6P25.3) WILD-TYPE 19 39  46 23
D41V8, multiclass
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  I                             7                            19
  II                            9                            39
  III                          12                            46
  IV                            6                            23
D41V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) MUTATED      1   38
  DEL PEAK 12(6P25.3) WILD-TYPE    4  134
     clus
vv    DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  NO                            1                             4
  YES                          38                           134
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 12(6P25.3) MUTATED   27  3  1  6
  DEL PEAK 12(6P25.3) WILD-TYPE 96  4 11 19
D41V10, multiclass
    clus
vv   DEL PEAK 12(6P25.3) MUTATED DEL PEAK 12(6P25.3) WILD-TYPE
  R0                          27                            96
  R1                           3                             4
  R2                           1                            11
  RX                           6                            19
D41V11, continuous

Clustering(42) Variable = Del Peak 13(6q26) mutation analysis
D42V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 13(6Q26) MUTATED   26  7
  DEL PEAK 13(6Q26) WILD-TYPE 96 11
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                         33                         107 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                          7                          11 
$`DEL PEAK 13(6Q26) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        1.35         0.62         1.22         0.82         0.16         4.54 
TCGA-BR-A4IY TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5800 TCGA-CD-5803 TCGA-CG-4301 
        0.39         0.23         0.72         0.36         0.07         3.02 
TCGA-CG-4305 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4469 
       15.95         8.05         4.01        29.98        12.03         7.07 
TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5732 
       12.00         6.94         1.02        12.03        15.02        55.04 
TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-FP-8099 
        3.58        15.65         8.19         5.95         6.61         1.02 
TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 
       59.05         0.56        26.43 

$`DEL PEAK 13(6Q26) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7851 
        0.46         1.25         0.13         1.05         0.69         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.20         0.59         0.92         0.79         0.72         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 
        0.53         0.43         0.13         0.10         0.82         0.69 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 
        0.49         0.30        20.02        27.02         1.02        52.96 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 
       54.05        14.01        47.05        19.07        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 
        8.98        18.94         1.02         1.02         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98         0.95        70.06        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
       65.10         4.01        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 
        9.80         9.63         6.90         0.69         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        7.79         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.02         3.58         6.87         3.55         2.53 

  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                       0.07                        0.10 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                      59.05                       72.23 
  DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE 
                       4.54                        1.05 
[1] "0.1 - 59.0 (4.5)" "0.1 - 72.2 (1.1)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4472                  TCGA-CG-4474 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4472                  TCGA-CG-4474 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-4472                  TCGA-CG-4474 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 13(6Q26) WILD-TYPE"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
  "DEL PEAK 13(6Q26) MUTATED"   "DEL PEAK 13(6Q26) MUTATED" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 13(6Q26) MUTATED" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
[1] "hr=" "1.5"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED     15   26
  DEL PEAK 13(6Q26) WILD-TYPE   55   81
        clus
vv       DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  FEMALE                        15                          55
  MALE                          26                          81
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 13(6Q26) MUTATED                                       6
  DEL PEAK 13(6Q26) WILD-TYPE                                    19
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 13(6Q26) MUTATED                                                       20
  DEL PEAK 13(6Q26) WILD-TYPE                                                     67
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 13(6Q26) MUTATED                                           1
  DEL PEAK 13(6Q26) WILD-TYPE                                         0
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 13(6Q26) MUTATED                                                   2
  DEL PEAK 13(6Q26) WILD-TYPE                                                 8
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 13(6Q26) MUTATED                                                    1
  DEL PEAK 13(6Q26) WILD-TYPE                                                  2
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 13(6Q26) MUTATED                                                  3
  DEL PEAK 13(6Q26) WILD-TYPE                                                7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 13(6Q26) MUTATED                                                                        7
  DEL PEAK 13(6Q26) WILD-TYPE                                                                     29
D42V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 13(6Q26) MUTATED    1 14 18  7
  DEL PEAK 13(6Q26) WILD-TYPE  5 40 46 36
D42V5, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  T1                         1                           5
  T2                        14                          40
  T3                        18                          46
  T4                         7                          36
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK 13(6Q26) MUTATED   11 14  8  7
  DEL PEAK 13(6Q26) WILD-TYPE 45 47 21 13
D42V6, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  N0                        11                          45
  N1                        14                          47
  N2                         8                          21
  N3                         7                          13
                             vv
clus                           M0  M1  MX
  DEL PEAK 13(6Q26) MUTATED    33   4   4
  DEL PEAK 13(6Q26) WILD-TYPE 113  14   9
D42V7, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  M0                        33                         113
  M1                         4                          14
  MX                         4                           9
                             vv
clus                           I II III IV
  DEL PEAK 13(6Q26) MUTATED    5 12  13  9
  DEL PEAK 13(6Q26) WILD-TYPE 21 36  45 20
D42V8, multiclass
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  I                           5                          21
  II                         12                          36
  III                        13                          45
  IV                          9                          20
D42V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) MUTATED      2   39
  DEL PEAK 13(6Q26) WILD-TYPE    3  133
     clus
vv    DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  NO                          2                           3
  YES                        39                         133
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK 13(6Q26) MUTATED   29  4  3  3
  DEL PEAK 13(6Q26) WILD-TYPE 94  3  9 22
D42V10, multiclass
    clus
vv   DEL PEAK 13(6Q26) MUTATED DEL PEAK 13(6Q26) WILD-TYPE
  R0                        29                          94
  R1                         4                           3
  R2                         3                           9
  RX                         3                          22
D42V11, continuous

Clustering(43) Variable = Del Peak 14(7q31.1) mutation analysis
D43V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 14(7Q31.1) MUTATED    16   1
  DEL PEAK 14(7Q31.1) WILD-TYPE 106  17
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                           17                           123 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                            1                            17 
$`DEL PEAK 14(7Q31.1) MUTATED`
TCGA-BR-6564 TCGA-BR-6706 TCGA-BR-7723 TCGA-BR-A4PF TCGA-CG-4301 TCGA-CG-4437 
        0.82         2.17         4.54         0.72         3.02         8.05 
TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4472 TCGA-D7-6815 TCGA-D7-6820 
       54.05        19.07        12.03        12.00         3.65         2.93 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8631 TCGA-IP-7968 
        7.79        72.23         0.20         0.56         2.53 

$`DEL PEAK 14(7Q31.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 
        0.85         0.62         0.62         1.71         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.39         0.79         0.72         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.13         0.23         0.10         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 
        0.49         0.30         0.07        20.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        1.02        52.96         4.01        14.01        29.98        47.05 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 
       21.99         1.02         8.98        18.94         7.07         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        1.68         4.70         4.04         4.27         0.62         6.54 
TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        2.01         0.39         3.02         3.58         1.02        59.05 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       26.43         6.87         3.55 

  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE 
                         3.65                          1.08 
[1] "0.2 - 72.2 (3.6)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 14(7Q31.1) MUTATED" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(7Q31.1) WILD-TYPE"   "DEL PEAK 14(7Q31.1) MUTATED" 
[1] "hr="     "2.4e+08"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      5   16
  DEL PEAK 14(7Q31.1) WILD-TYPE   65   91
        clus
vv       DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  FEMALE                           5                            65
  MALE                            16                            91
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 14(7Q31.1) MUTATED                                       0
  DEL PEAK 14(7Q31.1) WILD-TYPE                                    25
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 14(7Q31.1) MUTATED                                                       10
  DEL PEAK 14(7Q31.1) WILD-TYPE                                                     77
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 14(7Q31.1) MUTATED                                           0
  DEL PEAK 14(7Q31.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 14(7Q31.1) MUTATED                                                   3
  DEL PEAK 14(7Q31.1) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 14(7Q31.1) MUTATED                                                    0
  DEL PEAK 14(7Q31.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 14(7Q31.1) MUTATED                                                  2
  DEL PEAK 14(7Q31.1) WILD-TYPE                                                8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 14(7Q31.1) MUTATED                                                                        4
  DEL PEAK 14(7Q31.1) WILD-TYPE                                                                     32
D43V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 14(7Q31.1) MUTATED    0  6 10  4
  DEL PEAK 14(7Q31.1) WILD-TYPE  6 48 54 39
D43V5, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  T1                           0                             6
  T2                           6                            48
  T3                          10                            54
  T4                           4                            39
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 14(7Q31.1) MUTATED    1 13  6  0
  DEL PEAK 14(7Q31.1) WILD-TYPE 55 48 23 20
D43V6, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  N0                           1                            55
  N1                          13                            48
  N2                           6                            23
  N3                           0                            20
                               vv
clus                             M0  M1  MX
  DEL PEAK 14(7Q31.1) MUTATED    17   1   3
  DEL PEAK 14(7Q31.1) WILD-TYPE 129  17  10
D43V7, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  M0                          17                           129
  M1                           1                            17
  MX                           3                            10
                               vv
clus                             I II III IV
  DEL PEAK 14(7Q31.1) MUTATED    1  7   9  3
  DEL PEAK 14(7Q31.1) WILD-TYPE 25 41  49 26
D43V8, multiclass
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  I                             1                            25
  II                            7                            41
  III                           9                            49
  IV                            3                            26
D43V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) MUTATED      0   21
  DEL PEAK 14(7Q31.1) WILD-TYPE    5  151
     clus
vv    DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  NO                            0                             5
  YES                          21                           151
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 14(7Q31.1) MUTATED    15   1   1   2
  DEL PEAK 14(7Q31.1) WILD-TYPE 108   6  11  23
D43V10, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) MUTATED DEL PEAK 14(7Q31.1) WILD-TYPE
  R0                          15                           108
  R1                           1                             6
  R2                           1                            11
  RX                           2                            23
D43V11, continuous

Clustering(44) Variable = Del Peak 15(7q36.3) mutation analysis
D44V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(7Q36.3) MUTATED   23  1
  DEL PEAK 15(7Q36.3) WILD-TYPE 99 17
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                           24                           116 
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                            1                            17 
$`DEL PEAK 15(7Q36.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-A4PF TCGA-CD-5802 
        1.35         0.82         4.54         0.95         0.72         0.30 
TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4472 
        3.02         8.05        54.05        19.07        12.03        12.00 
TCGA-CG-5724 TCGA-D7-6519 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 
       12.03        15.65         5.95         6.61         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-8631 TCGA-IN-7808 
        4.04         2.93         7.79         0.20         0.56         3.55 

$`DEL PEAK 15(7Q36.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.69         0.16         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.79         0.72         0.79         0.53         0.43         0.13 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        0.23         0.10         0.82         0.69         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.07        20.02        27.02        15.95         1.02        52.96 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4462 
        4.01        14.01        29.98        47.05        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98        18.94         7.07         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 
        9.80         9.63         8.19         6.90         0.69         4.14 
TCGA-D7-6528 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        1.68         4.27         0.62         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 
        0.39         3.02         3.58         1.02        59.05        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE 
                        4.290                         1.035 
[1] "0.2 - 54.0 (4.3)" "0.1 - 72.2 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 15(7Q36.3) MUTATED"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 15(7Q36.3) WILD-TYPE"   "DEL PEAK 15(7Q36.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 15(7Q36.3) WILD-TYPE" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 15(7Q36.3) MUTATED" "DEL PEAK 15(7Q36.3) WILD-TYPE" 
[1] "hr=" "3.2"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(7Q36.3) MUTATED      9   22
  DEL PEAK 15(7Q36.3) WILD-TYPE   61   85
        clus
vv       DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  FEMALE                           9                            61
  MALE                            22                            85
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 15(7Q36.3) MUTATED                                       5
  DEL PEAK 15(7Q36.3) WILD-TYPE                                    20
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 15(7Q36.3) MUTATED                                                       13
  DEL PEAK 15(7Q36.3) WILD-TYPE                                                     74
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 15(7Q36.3) MUTATED                                           0
  DEL PEAK 15(7Q36.3) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 15(7Q36.3) MUTATED                                                   3
  DEL PEAK 15(7Q36.3) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 15(7Q36.3) MUTATED                                                    0
  DEL PEAK 15(7Q36.3) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 15(7Q36.3) MUTATED                                                  4
  DEL PEAK 15(7Q36.3) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 15(7Q36.3) MUTATED                                                                        4
  DEL PEAK 15(7Q36.3) WILD-TYPE                                                                     32
D44V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 15(7Q36.3) MUTATED    0  9 16  4
  DEL PEAK 15(7Q36.3) WILD-TYPE  6 45 48 39
D44V5, multiclass
    clus
vv   DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  T1                           0                             6
  T2                           9                            45
  T3                          16                            48
  T4                           4                            39
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 15(7Q36.3) MUTATED    2 16  7  4
  DEL PEAK 15(7Q36.3) WILD-TYPE 54 45 22 16
D44V6, multiclass
    clus
vv   DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  N0                           2                            54
  N1                          16                            45
  N2                           7                            22
  N3                           4                            16
                               vv
clus                             M0  M1  MX
  DEL PEAK 15(7Q36.3) MUTATED    26   3   2
  DEL PEAK 15(7Q36.3) WILD-TYPE 120  15  11
D44V7, multiclass
    clus
vv   DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  M0                          26                           120
  M1                           3                            15
  MX                           2                            11
                               vv
clus                             I II III IV
  DEL PEAK 15(7Q36.3) MUTATED    0 11  13  5
  DEL PEAK 15(7Q36.3) WILD-TYPE 26 37  45 24
D44V8, multiclass
     clus
vv    DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  I                             0                            26
  II                           11                            37
  III                          13                            45
  IV                            5                            24
D44V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(7Q36.3) MUTATED      1   30
  DEL PEAK 15(7Q36.3) WILD-TYPE    4  142
     clus
vv    DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  NO                            1                             4
  YES                          30                           142
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 15(7Q36.3) MUTATED    22   1   2   3
  DEL PEAK 15(7Q36.3) WILD-TYPE 101   6  10  22
D44V10, multiclass
    clus
vv   DEL PEAK 15(7Q36.3) MUTATED DEL PEAK 15(7Q36.3) WILD-TYPE
  R0                          22                           101
  R1                           1                             6
  R2                           2                            10
  RX                           3                            22
D44V11, continuous

Clustering(45) Variable = Del Peak 16(8p23.2) mutation analysis
D45V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 16(8P23.2) MUTATED   31  5
  DEL PEAK 16(8P23.2) WILD-TYPE 91 13
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                           36                           104 
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                            5                            13 
$`DEL PEAK 16(8P23.2) MUTATED`
TCGA-BR-6457 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 
        1.35         0.62         1.71         1.22         1.48         1.05 
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.82         4.54         0.39         0.72         0.23         0.72 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 
        0.36         0.30         3.02        52.96        54.05         4.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5725 
       29.98        47.05        19.07         1.02        12.03        15.02 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6526 
        4.01        55.04         3.58         9.80         8.19         6.61 
TCGA-D7-6528 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-FP-8099 TCGA-IP-7968 
        1.68         2.93         0.62         6.54         1.02         2.53 

$`DEL PEAK 16(8P23.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.82         0.62         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.66         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.13         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.92         0.79         0.79         0.53         0.43         0.13 
TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 
        0.10         0.82         0.69         0.49         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4455 
       27.02        15.95         1.02         8.05        14.01        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        5.98         0.95        70.06        28.96        31.04        65.10 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 
       21.07         7.99         8.65         4.54        15.65         9.63 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 
        6.90         0.69         5.95         4.14         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        4.04         4.27         7.79         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 
        0.20         3.02         3.58        59.05         0.56        26.43 
TCGA-IN-7806 TCGA-IN-7808 
        6.87         3.55 

  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                         0.23                          0.07 
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                        55.04                         72.23 
  DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE 
                         2.73                          1.02 
[1] "0.2 - 55.0 (2.7)" "0.1 - 72.2 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK 16(8P23.2) MUTATED"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
  "DEL PEAK 16(8P23.2) MUTATED" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 16(8P23.2) WILD-TYPE" "DEL PEAK 16(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 16(8P23.2) WILD-TYPE"   "DEL PEAK 16(8P23.2) MUTATED" 
[1] "hr=" "1.1"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(8P23.2) MUTATED     14   31
  DEL PEAK 16(8P23.2) WILD-TYPE   56   76
        clus
vv       DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  FEMALE                          14                            56
  MALE                            31                            76
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 16(8P23.2) MUTATED                                       4
  DEL PEAK 16(8P23.2) WILD-TYPE                                    21
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 16(8P23.2) MUTATED                                                       24
  DEL PEAK 16(8P23.2) WILD-TYPE                                                     63
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 16(8P23.2) MUTATED                                           0
  DEL PEAK 16(8P23.2) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 16(8P23.2) MUTATED                                                   2
  DEL PEAK 16(8P23.2) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 16(8P23.2) MUTATED                                                    1
  DEL PEAK 16(8P23.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 16(8P23.2) MUTATED                                                  5
  DEL PEAK 16(8P23.2) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 16(8P23.2) MUTATED                                                                        7
  DEL PEAK 16(8P23.2) WILD-TYPE                                                                     29
D45V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 16(8P23.2) MUTATED    2 13 20  8
  DEL PEAK 16(8P23.2) WILD-TYPE  4 41 44 35
D45V5, multiclass
    clus
vv   DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  T1                           2                             4
  T2                          13                            41
  T3                          20                            44
  T4                           8                            35
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 16(8P23.2) MUTATED   12 13 10  8
  DEL PEAK 16(8P23.2) WILD-TYPE 44 48 19 12
D45V6, multiclass
    clus
vv   DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  N0                          12                            44
  N1                          13                            48
  N2                          10                            19
  N3                           8                            12
                               vv
clus                             M0  M1  MX
  DEL PEAK 16(8P23.2) MUTATED    37   5   3
  DEL PEAK 16(8P23.2) WILD-TYPE 109  13  10
D45V7, multiclass
    clus
vv   DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  M0                          37                           109
  M1                           5                            13
  MX                           3                            10
                               vv
clus                             I II III IV
  DEL PEAK 16(8P23.2) MUTATED    5 15  12 10
  DEL PEAK 16(8P23.2) WILD-TYPE 21 33  46 19
D45V8, multiclass
     clus
vv    DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  I                             5                            21
  II                           15                            33
  III                          12                            46
  IV                           10                            19
D45V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(8P23.2) MUTATED      1   44
  DEL PEAK 16(8P23.2) WILD-TYPE    4  128
     clus
vv    DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  NO                            1                             4
  YES                          44                           128
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 16(8P23.2) MUTATED   30  4  5  3
  DEL PEAK 16(8P23.2) WILD-TYPE 93  3  7 22
D45V10, multiclass
    clus
vv   DEL PEAK 16(8P23.2) MUTATED DEL PEAK 16(8P23.2) WILD-TYPE
  R0                          30                            93
  R1                           4                             3
  R2                           5                             7
  RX                           3                            22
D45V11, continuous

Clustering(46) Variable = Del Peak 17(9p23) mutation analysis
D46V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 17(9P23) MUTATED   52  4
  DEL PEAK 17(9P23) WILD-TYPE 70 14
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                         56                          84 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                          4                          14 
$`DEL PEAK 17(9P23) MUTATED`
TCGA-B7-5816 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6803 
        5.62         1.35         1.35         0.99         1.22         0.66 
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.48         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7901 TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5799 
        0.95         0.72         0.13         0.23         0.72         0.69 
TCGA-CD-5800 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
        0.36         0.07         3.02         8.05        54.05         4.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4472 
       29.98        47.05        19.07        12.03        18.94        12.00 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5730 TCGA-CG-5732 
        1.02         1.02        70.06        12.03         4.01        55.04 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 
        8.19         5.95         6.61         4.14         3.65         4.70 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8209 
        2.93         7.79         0.20         3.02         1.02        59.05 
TCGA-FP-8631 TCGA-IN-7806 
        0.56         6.87 

$`DEL PEAK 17(9P23) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
        0.10         0.95         1.41         0.85         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        0.62         1.71         2.17         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7851 
        0.26         1.22         0.46         1.25         0.13         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 
        0.43         0.10         0.82         0.49         0.30        20.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4441 TCGA-CG-4460 
       27.02        15.95         1.02        52.96        14.01        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        1.02         8.98         7.07         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5725 TCGA-CG-5726 
        6.94         0.99         5.98         0.95        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-6522 TCGA-D7-6524 
       31.04        65.10        21.07         7.99         6.90         0.69 
TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        1.68         4.04         4.27         0.62         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
       72.23         0.39         3.58        26.43         3.55         2.53 

  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                       0.07                        0.10 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                      70.06                       72.23 
  DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE 
                       3.83                        1.02 
[1] "0.1 - 70.1 (3.8)" "0.1 - 72.2 (1.0)"
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4444                  TCGA-CG-4449 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4455                  TCGA-CG-4460 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-5579                  TCGA-D7-6518 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6817                  TCGA-D7-6818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4444                  TCGA-CG-4449 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4455                  TCGA-CG-4460 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-5579                  TCGA-D7-6518 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6817                  TCGA-D7-6818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-CD-5798 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4438                  TCGA-CG-4440 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4444                  TCGA-CG-4449 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-4455                  TCGA-CG-4460 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5719                  TCGA-CG-5720 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-5579                  TCGA-D7-6518 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6519                  TCGA-D7-6520 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6521                  TCGA-D7-6522 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6526                  TCGA-D7-6527 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-D7-6817                  TCGA-D7-6818 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
  "DEL PEAK 17(9P23) MUTATED" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-FP-8209                  TCGA-FP-8631 
  "DEL PEAK 17(9P23) MUTATED"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 17(9P23) WILD-TYPE"   "DEL PEAK 17(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 17(9P23) WILD-TYPE" "DEL PEAK 17(9P23) WILD-TYPE" 
[1] "hr=" "3"  
D46V2, continuous
D46V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(9P23) MUTATED     27   43
  DEL PEAK 17(9P23) WILD-TYPE   43   64
        clus
vv       DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  FEMALE                        27                          43
  MALE                          43                          64
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 17(9P23) MUTATED                                      11
  DEL PEAK 17(9P23) WILD-TYPE                                    14
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 17(9P23) MUTATED                                                       31
  DEL PEAK 17(9P23) WILD-TYPE                                                     56
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 17(9P23) MUTATED                                           0
  DEL PEAK 17(9P23) WILD-TYPE                                         1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 17(9P23) MUTATED                                                   5
  DEL PEAK 17(9P23) WILD-TYPE                                                 5
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 17(9P23) MUTATED                                                    2
  DEL PEAK 17(9P23) WILD-TYPE                                                  1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 17(9P23) MUTATED                                                  7
  DEL PEAK 17(9P23) WILD-TYPE                                                3
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 17(9P23) MUTATED                                                                       12
  DEL PEAK 17(9P23) WILD-TYPE                                                                     24
D46V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 17(9P23) MUTATED    1 24 29 11
  DEL PEAK 17(9P23) WILD-TYPE  5 30 35 32
D46V5, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  T1                         1                           5
  T2                        24                          30
  T3                        29                          35
  T4                        11                          32
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK 17(9P23) MUTATED   16 27 13 10
  DEL PEAK 17(9P23) WILD-TYPE 40 34 16 10
D46V6, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  N0                        16                          40
  N1                        27                          34
  N2                        13                          16
  N3                        10                          10
                             vv
clus                          M0 M1 MX
  DEL PEAK 17(9P23) MUTATED   60  5  5
  DEL PEAK 17(9P23) WILD-TYPE 86 13  8
D46V7, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  M0                        60                          86
  M1                         5                          13
  MX                         5                           8
                             vv
clus                           I II III IV
  DEL PEAK 17(9P23) MUTATED    4 23  25 12
  DEL PEAK 17(9P23) WILD-TYPE 22 25  33 17
D46V8, multiclass
     clus
vv    DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  I                           4                          22
  II                         23                          25
  III                        25                          33
  IV                         12                          17
D46V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 17(9P23) MUTATED      3   67
  DEL PEAK 17(9P23) WILD-TYPE    2  105
     clus
vv    DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  NO                          3                           2
  YES                        67                         105
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK 17(9P23) MUTATED   48  4  4  9
  DEL PEAK 17(9P23) WILD-TYPE 75  3  8 16
D46V10, multiclass
    clus
vv   DEL PEAK 17(9P23) MUTATED DEL PEAK 17(9P23) WILD-TYPE
  R0                        48                          75
  R1                         4                           3
  R2                         4                           8
  RX                         9                          16
D46V11, continuous

Clustering(47) Variable = Del Peak 18(9p21.3) mutation analysis
D47V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 18(9P21.3) MUTATED   48  8
  DEL PEAK 18(9P21.3) WILD-TYPE 74 10
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                           56                            84 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                            8                            10 
$`DEL PEAK 18(9P21.3) MUTATED`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7715 
        1.35         1.35         1.22         0.66         1.48         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-A4J1 
        0.82         0.69         0.16         4.54         0.95         0.72 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.13         0.23         0.72         0.82         0.69         0.36 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        0.07         3.02        27.02        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4472 
       29.98        47.05        19.07        12.03        18.94        12.00 
TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5724 TCGA-CG-5725 
        1.02         1.02         1.02         0.99        12.03        15.02 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 
        4.01        55.04         3.58         4.54        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 
        8.19         5.95         6.61         4.14         3.65         4.70 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 
        2.93         7.79        72.23         1.02        59.05         0.56 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

$`DEL PEAK 18(9P21.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.62         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        1.12         0.76         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.13         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.76         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-CD-5801 TCGA-CD-5802 
        0.79         0.53         0.43         0.10         0.49         0.30 
TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4460 
       20.02        15.95         1.02        52.96         8.05        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        1.02         8.98         7.07         1.02         1.02         6.94 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        5.98         0.95        70.06        28.96        31.04        65.10 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-6524 
       21.07         7.99         8.65         9.80         6.90         0.69 
TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        1.68         4.04         4.27         0.62         6.54         2.01 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7808 
        0.39         0.20         3.02         3.58        26.43         3.55 

  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE 
                        3.615                         1.020 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6521                    TCGA-D7-6522 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
  "DEL PEAK 18(9P21.3) MUTATED" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 18(9P21.3) WILD-TYPE" "DEL PEAK 18(9P21.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
  "DEL PEAK 18(9P21.3) MUTATED"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 18(9P21.3) WILD-TYPE"   "DEL PEAK 18(9P21.3) MUTATED" 
[1] "hr=" "1.5"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(9P21.3) MUTATED     24   42
  DEL PEAK 18(9P21.3) WILD-TYPE   46   65
        clus
vv       DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  FEMALE                          24                            46
  MALE                            42                            65
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 18(9P21.3) MUTATED                                       8
  DEL PEAK 18(9P21.3) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 18(9P21.3) MUTATED                                                       30
  DEL PEAK 18(9P21.3) WILD-TYPE                                                     57
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 18(9P21.3) MUTATED                                           0
  DEL PEAK 18(9P21.3) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 18(9P21.3) MUTATED                                                   5
  DEL PEAK 18(9P21.3) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 18(9P21.3) MUTATED                                                    2
  DEL PEAK 18(9P21.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 18(9P21.3) MUTATED                                                  6
  DEL PEAK 18(9P21.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 18(9P21.3) MUTATED                                                                       13
  DEL PEAK 18(9P21.3) WILD-TYPE                                                                     23
D47V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 18(9P21.3) MUTATED    1 25 27  9
  DEL PEAK 18(9P21.3) WILD-TYPE  5 29 37 34
D47V5, multiclass
    clus
vv   DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  T1                           1                             5
  T2                          25                            29
  T3                          27                            37
  T4                           9                            34
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 18(9P21.3) MUTATED   20 22 15  7
  DEL PEAK 18(9P21.3) WILD-TYPE 36 39 14 13
D47V6, multiclass
    clus
vv   DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  N0                          20                            36
  N1                          22                            39
  N2                          15                            14
  N3                           7                            13
                               vv
clus                            M0 M1 MX
  DEL PEAK 18(9P21.3) MUTATED   56  5  5
  DEL PEAK 18(9P21.3) WILD-TYPE 90 13  8
D47V7, multiclass
    clus
vv   DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  M0                          56                            90
  M1                           5                            13
  MX                           5                             8
                               vv
clus                             I II III IV
  DEL PEAK 18(9P21.3) MUTATED    9 21  21 11
  DEL PEAK 18(9P21.3) WILD-TYPE 17 27  37 18
D47V8, multiclass
     clus
vv    DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  I                             9                            17
  II                           21                            27
  III                          21                            37
  IV                           11                            18
D47V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(9P21.3) MUTATED      3   63
  DEL PEAK 18(9P21.3) WILD-TYPE    2  109
     clus
vv    DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  NO                            3                             2
  YES                          63                           109
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 18(9P21.3) MUTATED   47  3  4  6
  DEL PEAK 18(9P21.3) WILD-TYPE 76  4  8 19
D47V10, multiclass
    clus
vv   DEL PEAK 18(9P21.3) MUTATED DEL PEAK 18(9P21.3) WILD-TYPE
  R0                          47                            76
  R1                           3                             4
  R2                           4                             8
  RX                           6                            19
D47V11, continuous

Clustering(48) Variable = Del Peak 19(9q21.11) mutation analysis
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(9Q21.11) MUTATED   24  4
  DEL PEAK 19(9Q21.11) WILD-TYPE 98 14
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                            28                            112 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                             4                             14 
$`DEL PEAK 19(9Q21.11) MUTATED`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6803 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 
        1.35         1.35         0.66         1.05         0.82         4.54 
TCGA-BR-7901 TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 
        0.95         0.72         0.23         0.72         0.69         0.36 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4438 TCGA-CG-4455 TCGA-CG-5724 
        0.30         0.07        27.02        54.05        12.03        12.03 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 
       15.65         9.63         8.19         5.95         4.14         3.65 
TCGA-F1-6875 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 
       72.23         1.02        59.05         0.56 

$`DEL PEAK 19(9Q21.11) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        0.66         1.12         0.76         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 
        0.46         1.25         0.13         0.69         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4300 
        0.43         0.13         0.10         0.82         0.49        20.02 
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
        3.02        15.95         1.02        52.96         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 
       14.01        29.98        47.05        19.07        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        8.98        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6528 
        4.54         9.80         6.90         0.69         6.61         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        4.70         4.04         2.93         4.27         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        6.54         2.01         0.39         0.20         3.02         3.58 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE 
                          1.35                           1.22 
[1] "0.1 - 72.2 (1.4)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 19(9Q21.11) MUTATED" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 19(9Q21.11) WILD-TYPE"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 19(9Q21.11) MUTATED"   "DEL PEAK 19(9Q21.11) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 19(9Q21.11) WILD-TYPE" "DEL PEAK 19(9Q21.11) WILD-TYPE" 
[1] "hr=" "1.7"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(9Q21.11) MUTATED     13   24
  DEL PEAK 19(9Q21.11) WILD-TYPE   57   83
        clus
vv       DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  FEMALE                           13                             57
  MALE                             24                             83
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 19(9Q21.11) MUTATED                                       7
  DEL PEAK 19(9Q21.11) WILD-TYPE                                    18
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 19(9Q21.11) MUTATED                                                       21
  DEL PEAK 19(9Q21.11) WILD-TYPE                                                     66
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 19(9Q21.11) MUTATED                                           0
  DEL PEAK 19(9Q21.11) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 19(9Q21.11) MUTATED                                                   2
  DEL PEAK 19(9Q21.11) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 19(9Q21.11) MUTATED                                                    2
  DEL PEAK 19(9Q21.11) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 19(9Q21.11) MUTATED                                                  2
  DEL PEAK 19(9Q21.11) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 19(9Q21.11) MUTATED                                                                        3
  DEL PEAK 19(9Q21.11) WILD-TYPE                                                                     33
D48V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 19(9Q21.11) MUTATED    0 12 17  5
  DEL PEAK 19(9Q21.11) WILD-TYPE  6 42 47 38
D48V5, multiclass
    clus
vv   DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  T1                            0                              6
  T2                           12                             42
  T3                           17                             47
  T4                            5                             38
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 19(9Q21.11) MUTATED   11 12  8  4
  DEL PEAK 19(9Q21.11) WILD-TYPE 45 49 21 16
D48V6, multiclass
    clus
vv   DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  N0                           11                             45
  N1                           12                             49
  N2                            8                             21
  N3                            4                             16
                                vv
clus                              M0  M1  MX
  DEL PEAK 19(9Q21.11) MUTATED    34   1   2
  DEL PEAK 19(9Q21.11) WILD-TYPE 112  17  11
D48V7, multiclass
    clus
vv   DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  M0                           34                            112
  M1                            1                             17
  MX                            2                             11
                                vv
clus                              I II III IV
  DEL PEAK 19(9Q21.11) MUTATED    3 14  13  4
  DEL PEAK 19(9Q21.11) WILD-TYPE 23 34  45 25
D48V8, multiclass
     clus
vv    DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  I                              3                             23
  II                            14                             34
  III                           13                             45
  IV                             4                             25
D48V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(9Q21.11) MUTATED      2   35
  DEL PEAK 19(9Q21.11) WILD-TYPE    3  137
     clus
vv    DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  NO                             2                              3
  YES                           35                            137
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 19(9Q21.11) MUTATED   26  1  1  5
  DEL PEAK 19(9Q21.11) WILD-TYPE 97  6 11 20
D48V10, multiclass
    clus
vv   DEL PEAK 19(9Q21.11) MUTATED DEL PEAK 19(9Q21.11) WILD-TYPE
  R0                           26                             97
  R1                            1                              6
  R2                            1                             11
  RX                            5                             20
D48V11, continuous

Clustering(49) Variable = Del Peak 20(10p14) mutation analysis
D49V1, survival
                              sevent
clus2                            0   1
  DEL PEAK 20(10P14) MUTATED    16   0
  DEL PEAK 20(10P14) WILD-TYPE 106  18
  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                          16                          124 
  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                           0                           18 
$`DEL PEAK 20(10P14) MUTATED`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7901 TCGA-BR-A4IY TCGA-CD-5799 TCGA-CG-4301 
        1.35         0.82         0.95         0.39         0.69         3.02 
TCGA-CG-4304 TCGA-CG-4455 TCGA-CG-5732 TCGA-D7-6521 TCGA-D7-6528 TCGA-D7-6815 
       27.02        12.03        55.04         8.19         1.68         3.65 
TCGA-D7-6820 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8631 
        2.93         0.20         1.02         0.56 

$`DEL PEAK 20(10P14) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         4.54         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.79         0.72         0.79         0.53         0.43         0.13 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.23         0.10         0.72         0.82         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.30         0.07        20.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 
       15.02        28.96        31.04        65.10         4.01        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        9.63         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 
        4.70         4.04         4.27         0.62         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 
        2.01        72.23         0.39         3.02         3.58        59.05 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                        0.20                         0.07 
  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                       55.04                        72.23 
  DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE 
                       1.515                        1.220 
[1] "0.2 - 55.0 (1.5)" "0.1 - 72.2 (1.2)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 20(10P14) MUTATED"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "DEL PEAK 20(10P14) MUTATED"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 20(10P14) MUTATED"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "DEL PEAK 20(10P14) MUTATED"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 20(10P14) MUTATED"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "DEL PEAK 20(10P14) MUTATED"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
  "DEL PEAK 20(10P14) MUTATED" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 20(10P14) WILD-TYPE"   "DEL PEAK 20(10P14) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 20(10P14) WILD-TYPE" "DEL PEAK 20(10P14) WILD-TYPE" 
[1] "hr="   "8e+07"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(10P14) MUTATED      8   16
  DEL PEAK 20(10P14) WILD-TYPE   62   91
        clus
vv       DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  FEMALE                          8                           62
  MALE                           16                           91
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 20(10P14) MUTATED                                       1
  DEL PEAK 20(10P14) WILD-TYPE                                    24
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 20(10P14) MUTATED                                                       13
  DEL PEAK 20(10P14) WILD-TYPE                                                     74
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 20(10P14) MUTATED                                           0
  DEL PEAK 20(10P14) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 20(10P14) MUTATED                                                   3
  DEL PEAK 20(10P14) WILD-TYPE                                                 7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 20(10P14) MUTATED                                                    0
  DEL PEAK 20(10P14) WILD-TYPE                                                  3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 20(10P14) MUTATED                                                  3
  DEL PEAK 20(10P14) WILD-TYPE                                                7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 20(10P14) MUTATED                                                                        3
  DEL PEAK 20(10P14) WILD-TYPE                                                                     33
D49V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  DEL PEAK 20(10P14) MUTATED    0 10  8  2
  DEL PEAK 20(10P14) WILD-TYPE  6 44 56 41
D49V5, multiclass
    clus
vv   DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  T1                          0                            6
  T2                         10                           44
  T3                          8                           56
  T4                          2                           41
                              vv
clus                           N0 N1 N2 N3
  DEL PEAK 20(10P14) MUTATED    5 11  3  2
  DEL PEAK 20(10P14) WILD-TYPE 51 50 26 18
D49V6, multiclass
    clus
vv   DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  N0                          5                           51
  N1                         11                           50
  N2                          3                           26
  N3                          2                           18
                              vv
clus                            M0  M1  MX
  DEL PEAK 20(10P14) MUTATED    21   1   2
  DEL PEAK 20(10P14) WILD-TYPE 125  17  11
D49V7, multiclass
    clus
vv   DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  M0                         21                          125
  M1                          1                           17
  MX                          2                           11
                              vv
clus                            I II III IV
  DEL PEAK 20(10P14) MUTATED    3  7   7  3
  DEL PEAK 20(10P14) WILD-TYPE 23 41  51 26
D49V8, multiclass
     clus
vv    DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  I                            3                           23
  II                           7                           41
  III                          7                           51
  IV                           3                           26
D49V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(10P14) MUTATED      1   23
  DEL PEAK 20(10P14) WILD-TYPE    4  149
     clus
vv    DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  NO                           1                            4
  YES                         23                          149
                              vv
clus                            R0  R1  R2  RX
  DEL PEAK 20(10P14) MUTATED    15   1   1   6
  DEL PEAK 20(10P14) WILD-TYPE 108   6  11  19
D49V10, multiclass
    clus
vv   DEL PEAK 20(10P14) MUTATED DEL PEAK 20(10P14) WILD-TYPE
  R0                         15                          108
  R1                          1                            6
  R2                          1                           11
  RX                          6                           19
D49V11, continuous

Clustering(50) Variable = Del Peak 21(10q22.3) mutation analysis
D50V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 21(10Q22.3) MUTATED    17   2
  DEL PEAK 21(10Q22.3) WILD-TYPE 105  16
  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                            19                            121 
  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                             2                             16 
$`DEL PEAK 21(10Q22.3) MUTATED`
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4436 
        0.82         4.54         0.95         0.69         0.30        52.96 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5730 
        4.01        14.01        12.03        18.94         1.02         4.01 
TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        9.80         8.19         4.14         1.68         3.65         4.70 
TCGA-FP-7829 
        0.20 

$`DEL PEAK 21(10Q22.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        1.05         0.69         0.16         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.39         0.79         0.72         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 
        0.13         0.23         0.10         0.72         0.82         0.36 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.49         0.07        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
        1.02         8.05        54.05        29.98        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.95        70.06        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
       65.10        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        4.54        15.65         9.63         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        6.61         4.04         2.93         4.27         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        6.54         2.01        72.23         0.39         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        1.02        59.05         0.56        26.43         6.87         3.55 
TCGA-IP-7968 
        2.53 

  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                          0.20                           0.07 
  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                         52.96                          72.23 
  DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE 
                          4.01                           1.12 
[1] "0.2 - 53.0 (4.0)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 21(10Q22.3) MUTATED"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 21(10Q22.3) MUTATED"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 21(10Q22.3) WILD-TYPE"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 21(10Q22.3) MUTATED"   "DEL PEAK 21(10Q22.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 21(10Q22.3) MUTATED" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 21(10Q22.3) WILD-TYPE" "DEL PEAK 21(10Q22.3) WILD-TYPE" 
[1] "hr=" "1.2"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q22.3) MUTATED      8   16
  DEL PEAK 21(10Q22.3) WILD-TYPE   62   91
        clus
vv       DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  FEMALE                            8                             62
  MALE                             16                             91
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 21(10Q22.3) MUTATED                                       2
  DEL PEAK 21(10Q22.3) WILD-TYPE                                    23
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 21(10Q22.3) MUTATED                                                        8
  DEL PEAK 21(10Q22.3) WILD-TYPE                                                     79
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 21(10Q22.3) MUTATED                                           0
  DEL PEAK 21(10Q22.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 21(10Q22.3) MUTATED                                                   2
  DEL PEAK 21(10Q22.3) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 21(10Q22.3) MUTATED                                                    1
  DEL PEAK 21(10Q22.3) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 21(10Q22.3) MUTATED                                                  3
  DEL PEAK 21(10Q22.3) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 21(10Q22.3) MUTATED                                                                        7
  DEL PEAK 21(10Q22.3) WILD-TYPE                                                                     29
D50V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 21(10Q22.3) MUTATED    0 13  6  1
  DEL PEAK 21(10Q22.3) WILD-TYPE  6 41 58 42
D50V5, multiclass
    clus
vv   DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  T1                            0                              6
  T2                           13                             41
  T3                            6                             58
  T4                            1                             42
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 21(10Q22.3) MUTATED    4 10  4  3
  DEL PEAK 21(10Q22.3) WILD-TYPE 52 51 25 17
D50V6, multiclass
    clus
vv   DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  N0                            4                             52
  N1                           10                             51
  N2                            4                             25
  N3                            3                             17
                                vv
clus                              M0  M1  MX
  DEL PEAK 21(10Q22.3) MUTATED    22   2   0
  DEL PEAK 21(10Q22.3) WILD-TYPE 124  16  13
D50V7, multiclass
    clus
vv   DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  M0                           22                            124
  M1                            2                             16
  MX                            0                             13
                                vv
clus                              I II III IV
  DEL PEAK 21(10Q22.3) MUTATED    3  7   6  4
  DEL PEAK 21(10Q22.3) WILD-TYPE 23 41  52 25
D50V8, multiclass
     clus
vv    DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  I                              3                             23
  II                             7                             41
  III                            6                             52
  IV                             4                             25
D50V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(10Q22.3) MUTATED      1   23
  DEL PEAK 21(10Q22.3) WILD-TYPE    4  149
     clus
vv    DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  NO                             1                              4
  YES                           23                            149
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 21(10Q22.3) MUTATED    15   1   2   4
  DEL PEAK 21(10Q22.3) WILD-TYPE 108   6  10  21
D50V10, multiclass
    clus
vv   DEL PEAK 21(10Q22.3) MUTATED DEL PEAK 21(10Q22.3) WILD-TYPE
  R0                           15                            108
  R1                            1                              6
  R2                            2                             10
  RX                            4                             21
D50V11, continuous

Clustering(51) Variable = Del Peak 22(10q23.31) mutation analysis
D51V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 22(10Q23.31) MUTATED   28  4
  DEL PEAK 22(10Q23.31) WILD-TYPE 94 14
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             32                             108 
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                              4                              14 
$`DEL PEAK 22(10Q23.31) MUTATED`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-7704 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        0.10         1.41         1.25         0.82         4.54         0.95 
TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
        0.69         0.30        27.02        52.96         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4466 
       14.01        29.98        47.05        12.03        21.99        18.94 
TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-6518 
        1.02        15.02         4.01        55.04         8.65         9.80 
TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-FP-7735 
        8.19         4.14         1.68         3.65         4.70         0.39 
TCGA-FP-7829 TCGA-FP-8631 
        0.20         0.56 

$`DEL PEAK 22(10Q23.31) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.35         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 
        1.48         0.46         0.13         1.05         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 
        0.72         0.82         0.36         0.49         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4462 
        3.02        15.95         1.02        54.05        19.07         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 
       12.03        28.96        31.04        65.10        21.07         7.99 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 
        3.58         4.54        15.65         9.63         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        5.95         6.61         4.04         2.93         4.27         0.62 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-7998 
        7.79         6.54         2.01        72.23         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        1.02        59.05        26.43         6.87         3.55         2.53 

  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                           0.10                            0.07 
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                          55.04                           72.23 
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                           4.34                            1.02 
[1] "0.1 - 55.0 (4.3)" "0.1 - 72.2 (1.0)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 22(10Q23.31) MUTATED"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 22(10Q23.31) MUTATED" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 22(10Q23.31) WILD-TYPE"   "DEL PEAK 22(10Q23.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 22(10Q23.31) WILD-TYPE" "DEL PEAK 22(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.7"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(10Q23.31) MUTATED     12   26
  DEL PEAK 22(10Q23.31) WILD-TYPE   58   81
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  FEMALE                            12                              58
  MALE                              26                              81
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 22(10Q23.31) MUTATED                                       3
  DEL PEAK 22(10Q23.31) WILD-TYPE                                    22
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 22(10Q23.31) MUTATED                                                       14
  DEL PEAK 22(10Q23.31) WILD-TYPE                                                     73
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 22(10Q23.31) MUTATED                                           0
  DEL PEAK 22(10Q23.31) WILD-TYPE                                         1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 22(10Q23.31) MUTATED                                                   2
  DEL PEAK 22(10Q23.31) WILD-TYPE                                                 8
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 22(10Q23.31) MUTATED                                                    1
  DEL PEAK 22(10Q23.31) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 22(10Q23.31) MUTATED                                                  4
  DEL PEAK 22(10Q23.31) WILD-TYPE                                                6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 22(10Q23.31) MUTATED                                                                       13
  DEL PEAK 22(10Q23.31) WILD-TYPE                                                                     23
D51V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 22(10Q23.31) MUTATED    1 21  9  2
  DEL PEAK 22(10Q23.31) WILD-TYPE  5 33 55 41
D51V5, multiclass
    clus
vv   DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  T1                             1                               5
  T2                            21                              33
  T3                             9                              55
  T4                             2                              41
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 22(10Q23.31) MUTATED   10 14  6  5
  DEL PEAK 22(10Q23.31) WILD-TYPE 46 47 23 15
D51V6, multiclass
    clus
vv   DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  N0                            10                              46
  N1                            14                              47
  N2                             6                              23
  N3                             5                              15
                                 vv
clus                               M0  M1  MX
  DEL PEAK 22(10Q23.31) MUTATED    33   3   2
  DEL PEAK 22(10Q23.31) WILD-TYPE 113  15  11
D51V7, multiclass
    clus
vv   DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  M0                            33                             113
  M1                             3                              15
  MX                             2                              11
                                 vv
clus                               I II III IV
  DEL PEAK 22(10Q23.31) MUTATED    8  8  11  6
  DEL PEAK 22(10Q23.31) WILD-TYPE 18 40  47 23
D51V8, multiclass
     clus
vv    DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  I                               8                              18
  II                              8                              40
  III                            11                              47
  IV                              6                              23
D51V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(10Q23.31) MUTATED      1   37
  DEL PEAK 22(10Q23.31) WILD-TYPE    4  135
     clus
vv    DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  NO                              1                               4
  YES                            37                             135
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 22(10Q23.31) MUTATED   26  1  3  6
  DEL PEAK 22(10Q23.31) WILD-TYPE 97  6  9 19
D51V10, multiclass
    clus
vv   DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  R0                            26                              97
  R1                             1                               6
  R2                             3                               9
  RX                             6                              19
D51V11, continuous

Clustering(52) Variable = Del Peak 23(11p15.4) mutation analysis
D52V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 23(11P15.4) MUTATED    22   8
  DEL PEAK 23(11P15.4) WILD-TYPE 100  10
  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                            30                            110 
  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                             8                             10 
$`DEL PEAK 23(11P15.4) MUTATED`
TCGA-BR-6564 TCGA-BR-7703 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-A4J1 TCGA-BR-A4J4 
        0.82         0.46         0.82         4.54         0.72         0.53 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4304 TCGA-CG-4441 TCGA-CG-4443 
        0.69         0.36         0.30        27.02        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5717 TCGA-CG-5724 
       47.05        19.07        21.99        18.94         6.94        12.03 
TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 
       15.02         4.01        55.04         3.58         4.54        15.65 
TCGA-D7-6520 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-EQ-5647 TCGA-HJ-7597 
        9.63         4.14         1.68         3.65         0.62        26.43 

$`DEL PEAK 23(11P15.4) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 
        1.22         1.48         1.25         0.13         1.05         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.79         0.43         0.13         0.23         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        0.72         0.82         0.49         0.07        20.02         3.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       12.03         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 
        0.95        70.06        28.96        31.04        65.10        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        7.99         8.65         9.80         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        5.95         6.61         4.70         4.04         2.93         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        7.79         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-IN-7806 
        3.02         3.58         1.02        59.05         0.56         6.87 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                          0.30                           0.07 
  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                         55.04                          72.23 
  DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE 
                         4.540                          1.035 
[1] "0.3 - 55.0 (4.5)" "0.1 - 72.2 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 23(11P15.4) WILD-TYPE"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 23(11P15.4) MUTATED"   "DEL PEAK 23(11P15.4) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 23(11P15.4) MUTATED" "DEL PEAK 23(11P15.4) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 23(11P15.4) WILD-TYPE" "DEL PEAK 23(11P15.4) WILD-TYPE" 
[1] "hr=" "1.7"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11P15.4) MUTATED     14   26
  DEL PEAK 23(11P15.4) WILD-TYPE   56   81
        clus
vv       DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  FEMALE                           14                             56
  MALE                             26                             81
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 23(11P15.4) MUTATED                                       2
  DEL PEAK 23(11P15.4) WILD-TYPE                                    23
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 23(11P15.4) MUTATED                                                       18
  DEL PEAK 23(11P15.4) WILD-TYPE                                                     69
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 23(11P15.4) MUTATED                                           1
  DEL PEAK 23(11P15.4) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 23(11P15.4) MUTATED                                                   3
  DEL PEAK 23(11P15.4) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 23(11P15.4) MUTATED                                                    3
  DEL PEAK 23(11P15.4) WILD-TYPE                                                  0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 23(11P15.4) MUTATED                                                  5
  DEL PEAK 23(11P15.4) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 23(11P15.4) MUTATED                                                                        7
  DEL PEAK 23(11P15.4) WILD-TYPE                                                                     29
D52V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 23(11P15.4) MUTATED    2 19 11  5
  DEL PEAK 23(11P15.4) WILD-TYPE  4 35 53 38
D52V5, multiclass
    clus
vv   DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  T1                            2                              4
  T2                           19                             35
  T3                           11                             53
  T4                            5                             38
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 23(11P15.4) MUTATED    9 17  8  4
  DEL PEAK 23(11P15.4) WILD-TYPE 47 44 21 16
D52V6, multiclass
    clus
vv   DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  N0                            9                             47
  N1                           17                             44
  N2                            8                             21
  N3                            4                             16
                                vv
clus                              M0  M1  MX
  DEL PEAK 23(11P15.4) MUTATED    34   4   2
  DEL PEAK 23(11P15.4) WILD-TYPE 112  14  11
D52V7, multiclass
    clus
vv   DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  M0                           34                            112
  M1                            4                             14
  MX                            2                             11
                                vv
clus                              I II III IV
  DEL PEAK 23(11P15.4) MUTATED    7 10  12  7
  DEL PEAK 23(11P15.4) WILD-TYPE 19 38  46 22
D52V8, multiclass
     clus
vv    DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  I                              7                             19
  II                            10                             38
  III                           12                             46
  IV                             7                             22
D52V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11P15.4) MUTATED      2   38
  DEL PEAK 23(11P15.4) WILD-TYPE    3  134
     clus
vv    DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  NO                             2                              3
  YES                           38                            134
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 23(11P15.4) MUTATED    22   3   4   8
  DEL PEAK 23(11P15.4) WILD-TYPE 101   4   8  17
D52V10, multiclass
    clus
vv   DEL PEAK 23(11P15.4) MUTATED DEL PEAK 23(11P15.4) WILD-TYPE
  R0                           22                            101
  R1                            3                              4
  R2                            4                              8
  RX                            8                             17
D52V11, continuous

Clustering(53) Variable = Del Peak 24(11q23.2) mutation analysis
D53V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(11Q23.2) MUTATED   23  7
  DEL PEAK 24(11Q23.2) WILD-TYPE 99 11
  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                            30                            110 
  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                             7                             11 
$`DEL PEAK 24(11Q23.2) MUTATED`
TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7722 TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.82         1.22         0.16         0.72         0.23         0.72 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4437 
        0.69         0.36         0.30         3.02        27.02         8.05 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5719 
       14.01        29.98        12.03         1.02         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6527 TCGA-D7-6815 
       12.03        15.02         3.58         4.54         4.14         3.65 
TCGA-EQ-5647 TCGA-FP-7916 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        0.62         3.02        59.05         0.56        26.43         2.53 

$`DEL PEAK 24(11Q23.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.39         0.79         0.79         0.53         0.43         0.13 
TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4305 
        0.10         0.82         0.49         0.07        20.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 
        1.02        52.96        54.05         4.01        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         1.02         6.94         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       70.06        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       21.07         7.99         8.65         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         6.61         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8099 
        2.01        72.23         0.39         0.20         3.58         1.02 
TCGA-IN-7806 TCGA-IN-7808 
        6.87         3.55 

  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                          0.16                           0.07 
  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                         59.05                          72.23 
  DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE 
                         2.775                          1.200 
[1] "0.2 - 59.0 (2.8)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 24(11Q23.2) WILD-TYPE" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 24(11Q23.2) MUTATED"   "DEL PEAK 24(11Q23.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 24(11Q23.2) MUTATED" "DEL PEAK 24(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(11Q23.2) WILD-TYPE"   "DEL PEAK 24(11Q23.2) MUTATED" 
[1] "hr=" "2"  
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.2) MUTATED     12   27
  DEL PEAK 24(11Q23.2) WILD-TYPE   58   80
        clus
vv       DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  FEMALE                           12                             58
  MALE                             27                             80
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 24(11Q23.2) MUTATED                                       4
  DEL PEAK 24(11Q23.2) WILD-TYPE                                    21
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 24(11Q23.2) MUTATED                                                       18
  DEL PEAK 24(11Q23.2) WILD-TYPE                                                     69
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 24(11Q23.2) MUTATED                                           1
  DEL PEAK 24(11Q23.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 24(11Q23.2) MUTATED                                                   3
  DEL PEAK 24(11Q23.2) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 24(11Q23.2) MUTATED                                                    2
  DEL PEAK 24(11Q23.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 24(11Q23.2) MUTATED                                                  3
  DEL PEAK 24(11Q23.2) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 24(11Q23.2) MUTATED                                                                        8
  DEL PEAK 24(11Q23.2) WILD-TYPE                                                                     28
D53V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 24(11Q23.2) MUTATED    2 15 14  7
  DEL PEAK 24(11Q23.2) WILD-TYPE  4 39 50 36
D53V5, multiclass
    clus
vv   DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  T1                            2                              4
  T2                           15                             39
  T3                           14                             50
  T4                            7                             36
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 24(11Q23.2) MUTATED   11 13  9  5
  DEL PEAK 24(11Q23.2) WILD-TYPE 45 48 20 15
D53V6, multiclass
    clus
vv   DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  N0                           11                             45
  N1                           13                             48
  N2                            9                             20
  N3                            5                             15
                                vv
clus                              M0  M1  MX
  DEL PEAK 24(11Q23.2) MUTATED    29   5   5
  DEL PEAK 24(11Q23.2) WILD-TYPE 117  13   8
D53V7, multiclass
    clus
vv   DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  M0                           29                            117
  M1                            5                             13
  MX                            5                              8
                                vv
clus                              I II III IV
  DEL PEAK 24(11Q23.2) MUTATED    7 11  13  6
  DEL PEAK 24(11Q23.2) WILD-TYPE 19 37  45 23
D53V8, multiclass
     clus
vv    DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  I                              7                             19
  II                            11                             37
  III                           13                             45
  IV                             6                             23
D53V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q23.2) MUTATED      2   37
  DEL PEAK 24(11Q23.2) WILD-TYPE    3  135
     clus
vv    DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  NO                             2                              3
  YES                           37                            135
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 24(11Q23.2) MUTATED    22   3   4   5
  DEL PEAK 24(11Q23.2) WILD-TYPE 101   4   8  20
D53V10, multiclass
    clus
vv   DEL PEAK 24(11Q23.2) MUTATED DEL PEAK 24(11Q23.2) WILD-TYPE
  R0                           22                            101
  R1                            3                              4
  R2                            4                              8
  RX                            5                             20
D53V11, continuous

Clustering(54) Variable = Del Peak 25(12p13.31) mutation analysis
D54V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 25(12P13.31) MUTATED    16   3
  DEL PEAK 25(12P13.31) WILD-TYPE 106  15
  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                             19                             121 
  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                              3                              15 
$`DEL PEAK 25(12P13.31) MUTATED`
TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7901 TCGA-BR-A4PF TCGA-CD-5800 
        1.35         1.22         1.05         0.95         0.72         0.36 
TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6519 
        3.02        52.96        15.02        55.04         4.54        15.65 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-8631 
        1.68         4.70         4.27         0.62        72.23         0.56 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 25(12P13.31) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.79         0.72         0.79         0.53         0.43         0.13 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 
        0.23         0.10         0.82         0.69         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.07        20.02        27.02        15.95         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        8.65         3.58         9.80         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6818 
        0.69         5.95         6.61         4.14         3.65         4.04 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        2.93         7.79         6.54         2.01         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7806 
        3.02         3.58         1.02        59.05        26.43         6.87 
TCGA-IN-7808 
        3.55 

  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                           0.36                            0.07 
  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                          72.23                           70.06 
  DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE 
                           2.53                            1.12 
[1] "0.4 - 72.2 (2.5)" "0.1 - 70.1 (1.1)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 25(12P13.31) MUTATED" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(12P13.31) WILD-TYPE" "DEL PEAK 25(12P13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(12P13.31) WILD-TYPE"   "DEL PEAK 25(12P13.31) MUTATED" 
[1] "hr=" "1.8"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(12P13.31) MUTATED     11   15
  DEL PEAK 25(12P13.31) WILD-TYPE   59   92
        clus
vv       DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  FEMALE                            11                              59
  MALE                              15                              92
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 25(12P13.31) MUTATED                                       1
  DEL PEAK 25(12P13.31) WILD-TYPE                                    24
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 25(12P13.31) MUTATED                                                       17
  DEL PEAK 25(12P13.31) WILD-TYPE                                                     70
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 25(12P13.31) MUTATED                                           0
  DEL PEAK 25(12P13.31) WILD-TYPE                                         1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 25(12P13.31) MUTATED                                                   1
  DEL PEAK 25(12P13.31) WILD-TYPE                                                 9
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 25(12P13.31) MUTATED                                                    1
  DEL PEAK 25(12P13.31) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 25(12P13.31) MUTATED                                                  3
  DEL PEAK 25(12P13.31) WILD-TYPE                                                7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 25(12P13.31) MUTATED                                                                        3
  DEL PEAK 25(12P13.31) WILD-TYPE                                                                     33
D54V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 25(12P13.31) MUTATED    0 10 11  3
  DEL PEAK 25(12P13.31) WILD-TYPE  6 44 53 40
D54V5, multiclass
    clus
vv   DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  T1                             0                               6
  T2                            10                              44
  T3                            11                              53
  T4                             3                              40
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 25(12P13.31) MUTATED    9  7  5  3
  DEL PEAK 25(12P13.31) WILD-TYPE 47 54 24 17
D54V6, multiclass
    clus
vv   DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  N0                             9                              47
  N1                             7                              54
  N2                             5                              24
  N3                             3                              17
                                 vv
clus                               M0  M1  MX
  DEL PEAK 25(12P13.31) MUTATED    21   2   3
  DEL PEAK 25(12P13.31) WILD-TYPE 125  16  10
D54V7, multiclass
    clus
vv   DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  M0                            21                             125
  M1                             2                              16
  MX                             3                              10
                                 vv
clus                               I II III IV
  DEL PEAK 25(12P13.31) MUTATED    7  4  10  3
  DEL PEAK 25(12P13.31) WILD-TYPE 19 44  48 26
D54V8, multiclass
     clus
vv    DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  I                               7                              19
  II                              4                              44
  III                            10                              48
  IV                              3                              26
D54V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(12P13.31) MUTATED      1   25
  DEL PEAK 25(12P13.31) WILD-TYPE    4  147
     clus
vv    DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  NO                              1                               4
  YES                            25                             147
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 25(12P13.31) MUTATED    14   3   2   5
  DEL PEAK 25(12P13.31) WILD-TYPE 109   4  10  20
D54V10, multiclass
    clus
vv   DEL PEAK 25(12P13.31) MUTATED DEL PEAK 25(12P13.31) WILD-TYPE
  R0                            14                             109
  R1                             3                               4
  R2                             2                              10
  RX                             5                              20
D54V11, continuous

Clustering(55) Variable = Del Peak 26(13q14.2) mutation analysis
D55V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 26(13Q14.2) MUTATED    17   1
  DEL PEAK 26(13Q14.2) WILD-TYPE 105  17
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                            18                            122 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                             1                             17 
$`DEL PEAK 26(13Q14.2) MUTATED`
TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-A4IY TCGA-BR-A4J6 
        0.82         1.22         1.05         0.82         0.39         0.13 
TCGA-CG-4301 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5727 TCGA-CG-5733 TCGA-D7-5579 
        3.02        18.94         1.02        31.04        21.07         4.54 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6817 TCGA-FP-7916 TCGA-FP-8099 TCGA-IN-7808 
        5.95         6.61         4.70         3.02         1.02         3.55 

$`DEL PEAK 26(13Q14.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 
        1.48         0.46         1.25         0.13         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        4.54         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        1.48         0.76         0.20         0.59         0.92         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.72         0.79         0.53         0.43         0.23         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        0.72         0.82         0.69         0.36         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.07        20.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
       12.00         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       28.96        65.10         4.01        55.04         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        3.58         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 
        0.69         4.14         1.68         3.65         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.27         0.62         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 
        0.39         0.20         3.58        59.05         0.56        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                          0.13                           0.07 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                         31.04                          72.23 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                          3.02                           1.20 
[1] "0.1 - 31.0 (3.0)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 26(13Q14.2) MUTATED"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 26(13Q14.2) MUTATED"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 26(13Q14.2) MUTATED"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 26(13Q14.2) WILD-TYPE"   "DEL PEAK 26(13Q14.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 26(13Q14.2) WILD-TYPE" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 26(13Q14.2) MUTATED" "DEL PEAK 26(13Q14.2) WILD-TYPE" 
[1] "hr=" "2"  
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(13Q14.2) MUTATED     13   13
  DEL PEAK 26(13Q14.2) WILD-TYPE   57   94
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  FEMALE                           13                             57
  MALE                             13                             94
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 26(13Q14.2) MUTATED                                       3
  DEL PEAK 26(13Q14.2) WILD-TYPE                                    22
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 26(13Q14.2) MUTATED                                                       13
  DEL PEAK 26(13Q14.2) WILD-TYPE                                                     74
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 26(13Q14.2) MUTATED                                           0
  DEL PEAK 26(13Q14.2) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 26(13Q14.2) MUTATED                                                   2
  DEL PEAK 26(13Q14.2) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 26(13Q14.2) MUTATED                                                    0
  DEL PEAK 26(13Q14.2) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 26(13Q14.2) MUTATED                                                  3
  DEL PEAK 26(13Q14.2) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 26(13Q14.2) MUTATED                                                                        4
  DEL PEAK 26(13Q14.2) WILD-TYPE                                                                     32
D55V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 26(13Q14.2) MUTATED    0  8 13  4
  DEL PEAK 26(13Q14.2) WILD-TYPE  6 46 51 39
D55V5, multiclass
    clus
vv   DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  T1                            0                              6
  T2                            8                             46
  T3                           13                             51
  T4                            4                             39
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 26(13Q14.2) MUTATED    8  8  5  4
  DEL PEAK 26(13Q14.2) WILD-TYPE 48 53 24 16
D55V6, multiclass
    clus
vv   DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  N0                            8                             48
  N1                            8                             53
  N2                            5                             24
  N3                            4                             16
                                vv
clus                              M0  M1  MX
  DEL PEAK 26(13Q14.2) MUTATED    20   2   4
  DEL PEAK 26(13Q14.2) WILD-TYPE 126  16   9
D55V7, multiclass
    clus
vv   DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  M0                           20                            126
  M1                            2                             16
  MX                            4                              9
                                vv
clus                              I II III IV
  DEL PEAK 26(13Q14.2) MUTATED    3  7  11  3
  DEL PEAK 26(13Q14.2) WILD-TYPE 23 41  47 26
D55V8, multiclass
     clus
vv    DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  I                              3                             23
  II                             7                             41
  III                           11                             47
  IV                             3                             26
D55V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(13Q14.2) MUTATED      2   24
  DEL PEAK 26(13Q14.2) WILD-TYPE    3  148
     clus
vv    DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  NO                             2                              3
  YES                           24                            148
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 26(13Q14.2) MUTATED    15   3   1   5
  DEL PEAK 26(13Q14.2) WILD-TYPE 108   4  11  20
D55V10, multiclass
    clus
vv   DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  R0                           15                            108
  R1                            3                              4
  R2                            1                             11
  RX                            5                             20
D55V11, continuous

Clustering(56) Variable = Del Peak 27(14q21.1) mutation analysis
D56V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(14Q21.1) MUTATED   29  5
  DEL PEAK 27(14Q21.1) WILD-TYPE 93 13
  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                            34                            106 
  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                             5                             13 
$`DEL PEAK 27(14Q21.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7715 
        1.35         0.82         0.62         1.22         0.66         1.05 
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-CD-5800 
        0.82         4.54         0.72         0.13         0.10         0.36 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
        0.49         0.07        20.02         8.05        54.05         4.01 
TCGA-CG-4477 TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6521 
        1.02        12.03        15.02         4.54        15.65         8.19 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-EQ-8122 TCGA-FP-7916 TCGA-FP-8099 
        6.61         4.14         3.65         7.79         3.02         1.02 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        0.56        26.43         6.87         2.53 

$`DEL PEAK 27(14Q21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.26         1.22         1.48         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.13         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.92         0.39         0.79         0.79         0.53         0.43 
TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4301 
        0.23         0.72         0.82         0.69         0.30         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4441 TCGA-CG-4443 
       27.02        15.95         1.02        52.96        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
       18.94         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6522 
        7.99         8.65         3.58         9.80         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        0.69         5.95         1.68         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        4.27         0.62         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-IN-7808 
        0.20         3.58        59.05         3.55 

  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE 
                         2.775                          1.150 
[1] "0.1 - 54.0 (2.8)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 27(14Q21.1) MUTATED" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 27(14Q21.1) WILD-TYPE" "DEL PEAK 27(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(14Q21.1) MUTATED"   "DEL PEAK 27(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(14Q21.1) WILD-TYPE"   "DEL PEAK 27(14Q21.1) MUTATED" 
[1] "hr=" "1.6"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(14Q21.1) MUTATED     19   22
  DEL PEAK 27(14Q21.1) WILD-TYPE   51   85
        clus
vv       DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  FEMALE                           19                             51
  MALE                             22                             85
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 27(14Q21.1) MUTATED                                       6
  DEL PEAK 27(14Q21.1) WILD-TYPE                                    19
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 27(14Q21.1) MUTATED                                                       23
  DEL PEAK 27(14Q21.1) WILD-TYPE                                                     64
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 27(14Q21.1) MUTATED                                           1
  DEL PEAK 27(14Q21.1) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 27(14Q21.1) MUTATED                                                   1
  DEL PEAK 27(14Q21.1) WILD-TYPE                                                 9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 27(14Q21.1) MUTATED                                                    2
  DEL PEAK 27(14Q21.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 27(14Q21.1) MUTATED                                                  2
  DEL PEAK 27(14Q21.1) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 27(14Q21.1) MUTATED                                                                        6
  DEL PEAK 27(14Q21.1) WILD-TYPE                                                                     30
D56V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 27(14Q21.1) MUTATED    0 10 24  4
  DEL PEAK 27(14Q21.1) WILD-TYPE  6 44 40 39
D56V5, multiclass
    clus
vv   DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  T1                            0                              6
  T2                           10                             44
  T3                           24                             40
  T4                            4                             39
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 27(14Q21.1) MUTATED   12 13 10  3
  DEL PEAK 27(14Q21.1) WILD-TYPE 44 48 19 17
D56V6, multiclass
    clus
vv   DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  N0                           12                             44
  N1                           13                             48
  N2                           10                             19
  N3                            3                             17
                                vv
clus                              M0  M1  MX
  DEL PEAK 27(14Q21.1) MUTATED    32   2   7
  DEL PEAK 27(14Q21.1) WILD-TYPE 114  16   6
D56V7, multiclass
    clus
vv   DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  M0                           32                            114
  M1                            2                             16
  MX                            7                              6
                                vv
clus                              I II III IV
  DEL PEAK 27(14Q21.1) MUTATED    4 15  15  4
  DEL PEAK 27(14Q21.1) WILD-TYPE 22 33  43 25
D56V8, multiclass
     clus
vv    DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  I                              4                             22
  II                            15                             33
  III                           15                             43
  IV                             4                             25
D56V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(14Q21.1) MUTATED      2   39
  DEL PEAK 27(14Q21.1) WILD-TYPE    3  133
     clus
vv    DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  NO                             2                              3
  YES                           39                            133
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 27(14Q21.1) MUTATED   25  2  2  6
  DEL PEAK 27(14Q21.1) WILD-TYPE 98  5 10 19
D56V10, multiclass
    clus
vv   DEL PEAK 27(14Q21.1) MUTATED DEL PEAK 27(14Q21.1) WILD-TYPE
  R0                           25                             98
  R1                            2                              5
  R2                            2                             10
  RX                            6                             19
D56V11, continuous

Clustering(57) Variable = Del Peak 28(14q32.33) mutation analysis
D57V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 28(14Q32.33) MUTATED   33  3
  DEL PEAK 28(14Q32.33) WILD-TYPE 89 15
  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                             36                             104 
  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                              3                              15 
$`DEL PEAK 28(14Q32.33) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-6803 
        0.10         1.35         0.82         0.62         1.22         0.66 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J9 
        1.05         0.82         0.39         0.72         0.13         0.10 
TCGA-BR-A4PF TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4438 
        0.72         0.49         0.07        20.02        52.96        54.05 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4477 TCGA-CG-5733 TCGA-D7-6519 
       29.98        47.05        19.07         1.02        21.07        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6822 
        9.63         8.19         5.95         4.14         3.65         4.27 
TCGA-EQ-8122 TCGA-FP-7916 TCGA-FP-8099 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        7.79         3.02         1.02        26.43         6.87         2.53 

$`DEL PEAK 28(14Q32.33) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6566 
        5.62         0.95         1.41         1.35         0.85         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        1.71         2.17         0.99         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J8 
        0.92         0.79         0.79         0.53         0.43         0.23 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4304 
        0.82         0.69         0.36         0.30         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 
       15.95         1.02         8.05         4.01        14.01        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        55.04         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 
        3.58         4.54         9.80         6.90         0.69         6.61 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 
        1.68         4.70         4.04         2.93         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 
        2.01        72.23         0.39         0.20         3.58        59.05 
TCGA-FP-8631 TCGA-IN-7808 
        0.56         3.55 

  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                           0.07                            0.13 
  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                          54.05                           72.23 
  DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE 
                          2.775                           1.150 
[1] "0.1 - 54.0 (2.8)" "0.1 - 72.2 (1.1)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6521                      TCGA-D7-6522 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6521                      TCGA-D7-6522 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6521                      TCGA-D7-6522 
  "DEL PEAK 28(14Q32.33) MUTATED" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 28(14Q32.33) WILD-TYPE" "DEL PEAK 28(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 28(14Q32.33) MUTATED"   "DEL PEAK 28(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 28(14Q32.33) WILD-TYPE"   "DEL PEAK 28(14Q32.33) MUTATED" 
[1] "hr=" "2.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(14Q32.33) MUTATED     18   28
  DEL PEAK 28(14Q32.33) WILD-TYPE   52   79
        clus
vv       DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  FEMALE                            18                              52
  MALE                              28                              79
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 28(14Q32.33) MUTATED                                       7
  DEL PEAK 28(14Q32.33) WILD-TYPE                                    18
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 28(14Q32.33) MUTATED                                                       25
  DEL PEAK 28(14Q32.33) WILD-TYPE                                                     62
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 28(14Q32.33) MUTATED                                           1
  DEL PEAK 28(14Q32.33) WILD-TYPE                                         0
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 28(14Q32.33) MUTATED                                                   2
  DEL PEAK 28(14Q32.33) WILD-TYPE                                                 8
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 28(14Q32.33) MUTATED                                                    1
  DEL PEAK 28(14Q32.33) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 28(14Q32.33) MUTATED                                                  3
  DEL PEAK 28(14Q32.33) WILD-TYPE                                                7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 28(14Q32.33) MUTATED                                                                        6
  DEL PEAK 28(14Q32.33) WILD-TYPE                                                                     30
D57V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 28(14Q32.33) MUTATED    1 17 19  6
  DEL PEAK 28(14Q32.33) WILD-TYPE  5 37 45 37
D57V5, multiclass
    clus
vv   DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  T1                             1                               5
  T2                            17                              37
  T3                            19                              45
  T4                             6                              37
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 28(14Q32.33) MUTATED   16 15 11  2
  DEL PEAK 28(14Q32.33) WILD-TYPE 40 46 18 18
D57V6, multiclass
    clus
vv   DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  N0                            16                              40
  N1                            15                              46
  N2                            11                              18
  N3                             2                              18
                                 vv
clus                               M0  M1  MX
  DEL PEAK 28(14Q32.33) MUTATED    40   0   6
  DEL PEAK 28(14Q32.33) WILD-TYPE 106  18   7
D57V7, multiclass
    clus
vv   DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  M0                            40                             106
  M1                             0                              18
  MX                             6                               7
                                 vv
clus                               I II III IV
  DEL PEAK 28(14Q32.33) MUTATED    7 14  19  3
  DEL PEAK 28(14Q32.33) WILD-TYPE 19 34  39 26
D57V8, multiclass
     clus
vv    DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  I                               7                              19
  II                             14                              34
  III                            19                              39
  IV                              3                              26
D57V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(14Q32.33) MUTATED      3   43
  DEL PEAK 28(14Q32.33) WILD-TYPE    2  129
     clus
vv    DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  NO                              3                               2
  YES                            43                             129
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 28(14Q32.33) MUTATED   33  2  0  6
  DEL PEAK 28(14Q32.33) WILD-TYPE 90  5 12 19
D57V10, multiclass
    clus
vv   DEL PEAK 28(14Q32.33) MUTATED DEL PEAK 28(14Q32.33) WILD-TYPE
  R0                            33                              90
  R1                             2                               5
  R2                             0                              12
  RX                             6                              19
D57V11, continuous

Clustering(58) Variable = Del Peak 29(15q11.2) mutation analysis
D58V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(15Q11.2) MUTATED   25  6
  DEL PEAK 29(15Q11.2) WILD-TYPE 97 12
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                            31                            109 
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                             6                             12 
$`DEL PEAK 29(15Q11.2) MUTATED`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7901 
        1.35         1.35         0.62         0.46         1.25         0.95 
TCGA-BR-A4J1 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 
        0.72         0.49        20.02        52.96        54.05         4.01 
TCGA-CG-4444 TCGA-CG-4466 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5732 
       47.05        18.94         1.02        12.03        15.02        55.04 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 
        3.58         9.80        15.65         9.63         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-F1-6875 TCGA-HJ-7597 
        4.14         1.68         3.65         4.70        72.23        26.43 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 29(15Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.13         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.53         0.43         0.13         0.23         0.10         0.72 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.82         0.69         0.36         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 
       27.02        15.95         1.02         8.05        14.01        29.98 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98         0.95        70.06        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
       65.10         4.01        21.07         7.99         8.65         4.54 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        8.19         6.90         0.69         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        0.62         7.79         6.54         2.01         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-IN-7806 
        3.02         3.58         1.02        59.05         0.56         6.87 
TCGA-IN-7808 
        3.55 

  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                          0.46                           0.07 
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE 
                          4.70                           1.02 
[1] "0.5 - 72.2 (4.7)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 29(15Q11.2) MUTATED"   "DEL PEAK 29(15Q11.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 29(15Q11.2) WILD-TYPE" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(15Q11.2) MUTATED" "DEL PEAK 29(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(15Q11.2) WILD-TYPE"   "DEL PEAK 29(15Q11.2) MUTATED" 
[1] "hr=" "1.5"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(15Q11.2) MUTATED     13   27
  DEL PEAK 29(15Q11.2) WILD-TYPE   57   80
        clus
vv       DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  FEMALE                           13                             57
  MALE                             27                             80
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 29(15Q11.2) MUTATED                                       4
  DEL PEAK 29(15Q11.2) WILD-TYPE                                    21
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 29(15Q11.2) MUTATED                                                       17
  DEL PEAK 29(15Q11.2) WILD-TYPE                                                     70
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 29(15Q11.2) MUTATED                                           1
  DEL PEAK 29(15Q11.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 29(15Q11.2) MUTATED                                                   1
  DEL PEAK 29(15Q11.2) WILD-TYPE                                                 9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 29(15Q11.2) MUTATED                                                    2
  DEL PEAK 29(15Q11.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 29(15Q11.2) MUTATED                                                  7
  DEL PEAK 29(15Q11.2) WILD-TYPE                                                3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 29(15Q11.2) MUTATED                                                                        7
  DEL PEAK 29(15Q11.2) WILD-TYPE                                                                     29
D58V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 29(15Q11.2) MUTATED    1 18 15  3
  DEL PEAK 29(15Q11.2) WILD-TYPE  5 36 49 40
D58V5, multiclass
    clus
vv   DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  T1                            1                              5
  T2                           18                             36
  T3                           15                             49
  T4                            3                             40
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 29(15Q11.2) MUTATED   13  8  9  6
  DEL PEAK 29(15Q11.2) WILD-TYPE 43 53 20 14
D58V6, multiclass
    clus
vv   DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  N0                           13                             43
  N1                            8                             53
  N2                            9                             20
  N3                            6                             14
                                vv
clus                              M0  M1  MX
  DEL PEAK 29(15Q11.2) MUTATED    34   3   3
  DEL PEAK 29(15Q11.2) WILD-TYPE 112  15  10
D58V7, multiclass
    clus
vv   DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  M0                           34                            112
  M1                            3                             15
  MX                            3                             10
                                vv
clus                              I II III IV
  DEL PEAK 29(15Q11.2) MUTATED    8  7  14  7
  DEL PEAK 29(15Q11.2) WILD-TYPE 18 41  44 22
D58V8, multiclass
     clus
vv    DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  I                              8                             18
  II                             7                             41
  III                           14                             44
  IV                             7                             22
D58V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(15Q11.2) MUTATED      3   37
  DEL PEAK 29(15Q11.2) WILD-TYPE    2  135
     clus
vv    DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  NO                             3                              2
  YES                           37                            135
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 29(15Q11.2) MUTATED   29  3  2  4
  DEL PEAK 29(15Q11.2) WILD-TYPE 94  4 10 21
D58V10, multiclass
    clus
vv   DEL PEAK 29(15Q11.2) MUTATED DEL PEAK 29(15Q11.2) WILD-TYPE
  R0                           29                             94
  R1                            3                              4
  R2                            2                             10
  RX                            4                             21
D58V11, continuous

Clustering(59) Variable = Del Peak 30(15q15.1) mutation analysis
D59V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 30(15Q15.1) MUTATED   25  6
  DEL PEAK 30(15Q15.1) WILD-TYPE 97 12
  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                            31                            109 
  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                             6                             12 
$`DEL PEAK 30(15Q15.1) MUTATED`
TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7704 TCGA-BR-7901 TCGA-BR-A4J1 TCGA-CD-5801 
        0.62         1.22         1.25         0.95         0.72         0.49 
TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 
       20.02        52.96        54.05         4.01        14.01        47.05 
TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5732 TCGA-D7-5578 
       18.94         1.02         1.02        12.03        55.04         3.58 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        9.80        15.65         9.63         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6822 TCGA-F1-6875 TCGA-FP-7998 TCGA-HJ-7597 
        1.68         4.70         4.27        72.23         3.58        26.43 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 30(15Q15.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.79         0.79         0.53         0.43         0.13         0.23 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        0.10         0.72         0.82         0.69         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.07         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 TCGA-D7-6818 
        4.54         8.19         6.90         0.69         3.65         4.04 
TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 
        2.93         0.62         7.79         6.54         2.01         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-IN-7806 
        0.20         3.02         1.02        59.05         0.56         6.87 
TCGA-IN-7808 
        3.55 

  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                          0.49                           0.07 
  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE 
                          4.70                           1.02 
[1] "0.5 - 72.2 (4.7)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 30(15Q15.1) MUTATED"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 30(15Q15.1) WILD-TYPE" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 30(15Q15.1) MUTATED" "DEL PEAK 30(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 30(15Q15.1) WILD-TYPE"   "DEL PEAK 30(15Q15.1) MUTATED" 
[1] "hr=" "1.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(15Q15.1) MUTATED     13   28
  DEL PEAK 30(15Q15.1) WILD-TYPE   57   79
        clus
vv       DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  FEMALE                           13                             57
  MALE                             28                             79
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 30(15Q15.1) MUTATED                                       5
  DEL PEAK 30(15Q15.1) WILD-TYPE                                    20
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 30(15Q15.1) MUTATED                                                       16
  DEL PEAK 30(15Q15.1) WILD-TYPE                                                     71
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 30(15Q15.1) MUTATED                                           1
  DEL PEAK 30(15Q15.1) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 30(15Q15.1) MUTATED                                                   1
  DEL PEAK 30(15Q15.1) WILD-TYPE                                                 9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 30(15Q15.1) MUTATED                                                    1
  DEL PEAK 30(15Q15.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 30(15Q15.1) MUTATED                                                  7
  DEL PEAK 30(15Q15.1) WILD-TYPE                                                3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 30(15Q15.1) MUTATED                                                                        9
  DEL PEAK 30(15Q15.1) WILD-TYPE                                                                     27
D59V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 30(15Q15.1) MUTATED    0 20 14  4
  DEL PEAK 30(15Q15.1) WILD-TYPE  6 34 50 39
D59V5, multiclass
    clus
vv   DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  T1                            0                              6
  T2                           20                             34
  T3                           14                             50
  T4                            4                             39
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 30(15Q15.1) MUTATED   13  6 10  7
  DEL PEAK 30(15Q15.1) WILD-TYPE 43 55 19 13
D59V6, multiclass
    clus
vv   DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  N0                           13                             43
  N1                            6                             55
  N2                           10                             19
  N3                            7                             13
                                vv
clus                              M0  M1  MX
  DEL PEAK 30(15Q15.1) MUTATED    33   3   5
  DEL PEAK 30(15Q15.1) WILD-TYPE 113  15   8
D59V7, multiclass
    clus
vv   DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  M0                           33                            113
  M1                            3                             15
  MX                            5                              8
                                vv
clus                              I II III IV
  DEL PEAK 30(15Q15.1) MUTATED    9  5  15  7
  DEL PEAK 30(15Q15.1) WILD-TYPE 17 43  43 22
D59V8, multiclass
     clus
vv    DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  I                              9                             17
  II                             5                             43
  III                           15                             43
  IV                             7                             22
D59V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(15Q15.1) MUTATED      3   38
  DEL PEAK 30(15Q15.1) WILD-TYPE    2  134
     clus
vv    DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  NO                             3                              2
  YES                           38                            134
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 30(15Q15.1) MUTATED   27  4  2  6
  DEL PEAK 30(15Q15.1) WILD-TYPE 96  3 10 19
D59V10, multiclass
    clus
vv   DEL PEAK 30(15Q15.1) MUTATED DEL PEAK 30(15Q15.1) WILD-TYPE
  R0                           27                             96
  R1                            4                              3
  R2                            2                             10
  RX                            6                             19
D59V11, continuous

Clustering(60) Variable = Del Peak 31(16p13.3) mutation analysis
D60V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 31(16P13.3) MUTATED    12   3
  DEL PEAK 31(16P13.3) WILD-TYPE 110  15
  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                            15                            125 
  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                             3                             15 
$`DEL PEAK 31(16P13.3) MUTATED`
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7901 TCGA-BR-A4J1 TCGA-BR-A4PF 
        1.48         1.05         0.82         0.95         0.72         0.72 
TCGA-CD-5803 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-5724 TCGA-D7-5579 
        0.07        47.05        19.07        12.03        12.03         4.54 
TCGA-D7-6528 TCGA-D7-6822 TCGA-F1-6875 
        1.68         4.27        72.23 

$`DEL PEAK 31(16P13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 
        0.26         1.22         0.46         1.25         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.79         0.79         0.53         0.43         0.13         0.23 
TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        0.10         0.82         0.69         0.36         0.49         0.30 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 
        8.05        54.05         4.01        14.01        29.98        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        3.58         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 
        0.69         5.95         6.61         4.14         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         0.62         7.79         6.54         2.01 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        0.39         0.20         3.02         3.58         1.02        59.05 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        0.56        26.43         6.87         3.55         2.53 

  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE 
                          1.68                           1.22 
[1] "0.1 - 72.2 (1.7)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 31(16P13.3) MUTATED"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 31(16P13.3) MUTATED"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 31(16P13.3) MUTATED"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 31(16P13.3) MUTATED"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 31(16P13.3) MUTATED"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 31(16P13.3) MUTATED"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 31(16P13.3) WILD-TYPE"   "DEL PEAK 31(16P13.3) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 31(16P13.3) MUTATED" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(16P13.3) WILD-TYPE" "DEL PEAK 31(16P13.3) WILD-TYPE" 
[1] "hr=" "1.4"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(16P13.3) MUTATED      6   17
  DEL PEAK 31(16P13.3) WILD-TYPE   64   90
        clus
vv       DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  FEMALE                            6                             64
  MALE                             17                             90
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 31(16P13.3) MUTATED                                       1
  DEL PEAK 31(16P13.3) WILD-TYPE                                    24
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 31(16P13.3) MUTATED                                                       14
  DEL PEAK 31(16P13.3) WILD-TYPE                                                     73
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 31(16P13.3) MUTATED                                           0
  DEL PEAK 31(16P13.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 31(16P13.3) MUTATED                                                   4
  DEL PEAK 31(16P13.3) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 31(16P13.3) MUTATED                                                    0
  DEL PEAK 31(16P13.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 31(16P13.3) MUTATED                                                  3
  DEL PEAK 31(16P13.3) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 31(16P13.3) MUTATED                                                                        0
  DEL PEAK 31(16P13.3) WILD-TYPE                                                                     36
D60V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 31(16P13.3) MUTATED    0  8  9  3
  DEL PEAK 31(16P13.3) WILD-TYPE  6 46 55 40
D60V5, multiclass
    clus
vv   DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  T1                            0                              6
  T2                            8                             46
  T3                            9                             55
  T4                            3                             40
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 31(16P13.3) MUTATED    6  9  3  2
  DEL PEAK 31(16P13.3) WILD-TYPE 50 52 26 18
D60V6, multiclass
    clus
vv   DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  N0                            6                             50
  N1                            9                             52
  N2                            3                             26
  N3                            2                             18
                                vv
clus                              M0  M1  MX
  DEL PEAK 31(16P13.3) MUTATED    22   1   0
  DEL PEAK 31(16P13.3) WILD-TYPE 124  17  13
D60V7, multiclass
    clus
vv   DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  M0                           22                            124
  M1                            1                             17
  MX                            0                             13
                                vv
clus                              I II III IV
  DEL PEAK 31(16P13.3) MUTATED    3  6   7  3
  DEL PEAK 31(16P13.3) WILD-TYPE 23 42  51 26
D60V8, multiclass
     clus
vv    DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  I                              3                             23
  II                             6                             42
  III                            7                             51
  IV                             3                             26
D60V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(16P13.3) MUTATED      1   22
  DEL PEAK 31(16P13.3) WILD-TYPE    4  150
     clus
vv    DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  NO                             1                              4
  YES                           22                            150
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 31(16P13.3) MUTATED    12   3   1   6
  DEL PEAK 31(16P13.3) WILD-TYPE 111   4  11  19
D60V10, multiclass
    clus
vv   DEL PEAK 31(16P13.3) MUTATED DEL PEAK 31(16P13.3) WILD-TYPE
  R0                           12                            111
  R1                            3                              4
  R2                            1                             11
  RX                            6                             19
D60V11, continuous

Clustering(61) Variable = Del Peak 32(16q23.1) mutation analysis
D61V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 32(16Q23.1) MUTATED   36  5
  DEL PEAK 32(16Q23.1) WILD-TYPE 86 13
  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                            41                             99 
  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                             5                             13 
$`DEL PEAK 32(16Q23.1) MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6706 TCGA-BR-7703 
        5.62         0.10         1.35         0.82         2.17         0.46 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-A4J1 TCGA-BR-A4PF 
        1.05         0.69         4.54         0.95         0.72         0.72 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
        0.36         0.30         0.07        15.95        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4469 TCGA-CG-4477 
       54.05        47.05        19.07        12.03         7.07         1.02 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 TCGA-D7-5577 TCGA-D7-5578 
       70.06        12.03        15.02        31.04         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 
        4.54         5.95         6.61         1.68         4.70         4.04 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7808 
        7.79        72.23         3.02         3.58         3.55 

$`DEL PEAK 32(16Q23.1) WILD-TYPE`
TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 
        0.95         1.41         1.35         0.85         0.62         0.62 
TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        1.71         0.99         1.22         0.66         1.12         0.76 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 
        0.66         0.26         1.22         1.48         1.25         0.13 
TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.82         0.16         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.79         0.79         0.53         0.43         0.13         0.23 
TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 
        0.10         0.82         0.69         0.49        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 
       27.02         1.02         4.01        14.01        29.98        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
        1.02         8.98        18.94        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.14         3.65         2.93         4.27         0.62         6.54 
TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 
        2.01         0.39         0.20         1.02        59.05         0.56 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
       26.43         6.87         2.53 

  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                         72.23                          65.10 
  DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE 
                          4.54                           1.02 
[1] "0.1 - 72.2 (4.5)" "0.1 - 65.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 32(16Q23.1) MUTATED"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 32(16Q23.1) WILD-TYPE"   "DEL PEAK 32(16Q23.1) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 32(16Q23.1) WILD-TYPE" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 32(16Q23.1) MUTATED" "DEL PEAK 32(16Q23.1) WILD-TYPE" 
[1] "hr=" "2.4"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q23.1) MUTATED     16   42
  DEL PEAK 32(16Q23.1) WILD-TYPE   54   65
        clus
vv       DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  FEMALE                           16                             54
  MALE                             42                             65
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 32(16Q23.1) MUTATED                                       9
  DEL PEAK 32(16Q23.1) WILD-TYPE                                    16
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 32(16Q23.1) MUTATED                                                       26
  DEL PEAK 32(16Q23.1) WILD-TYPE                                                     61
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 32(16Q23.1) MUTATED                                           0
  DEL PEAK 32(16Q23.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 32(16Q23.1) MUTATED                                                   5
  DEL PEAK 32(16Q23.1) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 32(16Q23.1) MUTATED                                                    2
  DEL PEAK 32(16Q23.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 32(16Q23.1) MUTATED                                                  6
  DEL PEAK 32(16Q23.1) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 32(16Q23.1) MUTATED                                                                        8
  DEL PEAK 32(16Q23.1) WILD-TYPE                                                                     28
D61V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 32(16Q23.1) MUTATED    1 22 25  8
  DEL PEAK 32(16Q23.1) WILD-TYPE  5 32 39 35
D61V5, multiclass
    clus
vv   DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  T1                            1                              5
  T2                           22                             32
  T3                           25                             39
  T4                            8                             35
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 32(16Q23.1) MUTATED   14 23  8 10
  DEL PEAK 32(16Q23.1) WILD-TYPE 42 38 21 10
D61V6, multiclass
    clus
vv   DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  N0                           14                             42
  N1                           23                             38
  N2                            8                             21
  N3                           10                             10
                                vv
clus                             M0 M1 MX
  DEL PEAK 32(16Q23.1) MUTATED   51  2  5
  DEL PEAK 32(16Q23.1) WILD-TYPE 95 16  8
D61V7, multiclass
    clus
vv   DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  M0                           51                             95
  M1                            2                             16
  MX                            5                              8
                                vv
clus                              I II III IV
  DEL PEAK 32(16Q23.1) MUTATED    8 19  21  6
  DEL PEAK 32(16Q23.1) WILD-TYPE 18 29  37 23
D61V8, multiclass
     clus
vv    DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  I                              8                             18
  II                            19                             29
  III                           21                             37
  IV                             6                             23
D61V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16Q23.1) MUTATED      3   55
  DEL PEAK 32(16Q23.1) WILD-TYPE    2  117
     clus
vv    DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  NO                             3                              2
  YES                           55                            117
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 32(16Q23.1) MUTATED   37  4  1 10
  DEL PEAK 32(16Q23.1) WILD-TYPE 86  3 11 15
D61V10, multiclass
    clus
vv   DEL PEAK 32(16Q23.1) MUTATED DEL PEAK 32(16Q23.1) WILD-TYPE
  R0                           37                             86
  R1                            4                              3
  R2                            1                             11
  RX                           10                             15
D61V11, continuous

Clustering(62) Variable = Del Peak 33(17p12) mutation analysis
D62V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 33(17P12) MUTATED   43  6
  DEL PEAK 33(17P12) WILD-TYPE 79 12
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                          49                           91 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                           6                           12 
$`DEL PEAK 33(17P12) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7704 
        0.10         1.35         0.62         1.22         1.48         1.25 
TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5799 
        1.05         4.54         0.72         0.23         0.72         0.69 
TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 
        0.36        20.02         3.02        27.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4469 
       54.05         4.01        29.98        47.05        19.07         7.07 
TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 
        1.02         1.02         1.02        15.02        31.04         4.01 
TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 
       55.04         4.54        15.65         9.63         8.19         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 
        6.61         4.14         1.68         3.65         2.93         4.27 
TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 
       72.23         3.02         1.02         0.56        26.43         6.87 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 33(17P12) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 
        0.76         0.66         0.26         1.22         0.46         0.13 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.82         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.92         0.39         0.79         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.13         0.10         0.82         0.49         0.30         0.07 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
       15.95         1.02        14.01        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98        18.94        12.00         1.02         1.02         6.94 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        12.03        28.96 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 
       65.10        21.07         7.99         8.65         3.58         9.80 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6817 TCGA-D7-6818 TCGA-EQ-5647 TCGA-EQ-8122 
        6.90         0.69         4.70         4.04         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 
        6.54         2.01         0.39         0.20         3.58        59.05 
TCGA-IN-7808 
        3.55 

  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                        0.10                         0.07 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                       72.23                        70.06 
  DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE 
                        4.01                         0.99 
[1] "0.1 - 72.2 (4.0)" "0.1 - 70.1 (1.0)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6521                   TCGA-D7-6522 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 33(17P12) WILD-TYPE" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
  "DEL PEAK 33(17P12) MUTATED" "DEL PEAK 33(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 33(17P12) MUTATED"   "DEL PEAK 33(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 33(17P12) WILD-TYPE"   "DEL PEAK 33(17P12) MUTATED" 
[1] "hr=" "2.7"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED     21   39
  DEL PEAK 33(17P12) WILD-TYPE   49   68
        clus
vv       DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  FEMALE                         21                           49
  MALE                           39                           68
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 33(17P12) MUTATED                                       6
  DEL PEAK 33(17P12) WILD-TYPE                                    19
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 33(17P12) MUTATED                                                       24
  DEL PEAK 33(17P12) WILD-TYPE                                                     63
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 33(17P12) MUTATED                                           1
  DEL PEAK 33(17P12) WILD-TYPE                                         0
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 33(17P12) MUTATED                                                   4
  DEL PEAK 33(17P12) WILD-TYPE                                                 6
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 33(17P12) MUTATED                                                    2
  DEL PEAK 33(17P12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 33(17P12) MUTATED                                                  7
  DEL PEAK 33(17P12) WILD-TYPE                                                3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 33(17P12) MUTATED                                                                       15
  DEL PEAK 33(17P12) WILD-TYPE                                                                     21
D62V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  DEL PEAK 33(17P12) MUTATED    1 28 23  6
  DEL PEAK 33(17P12) WILD-TYPE  5 26 41 37
D62V5, multiclass
    clus
vv   DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  T1                          1                            5
  T2                         28                           26
  T3                         23                           41
  T4                          6                           37
                              vv
clus                           N0 N1 N2 N3
  DEL PEAK 33(17P12) MUTATED   21 17 14  6
  DEL PEAK 33(17P12) WILD-TYPE 35 44 15 14
D62V6, multiclass
    clus
vv   DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  N0                         21                           35
  N1                         17                           44
  N2                         14                           15
  N3                          6                           14
                              vv
clus                           M0 M1 MX
  DEL PEAK 33(17P12) MUTATED   50  4  6
  DEL PEAK 33(17P12) WILD-TYPE 96 14  7
D62V7, multiclass
    clus
vv   DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  M0                         50                           96
  M1                          4                           14
  MX                          6                            7
                              vv
clus                            I II III IV
  DEL PEAK 33(17P12) MUTATED   12 19  18  8
  DEL PEAK 33(17P12) WILD-TYPE 14 29  40 21
D62V8, multiclass
     clus
vv    DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  I                           12                           14
  II                          19                           29
  III                         18                           40
  IV                           8                           21
D62V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 33(17P12) MUTATED      4   56
  DEL PEAK 33(17P12) WILD-TYPE    1  116
     clus
vv    DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  NO                           4                            1
  YES                         56                          116
                              vv
clus                           R0 R1 R2 RX
  DEL PEAK 33(17P12) MUTATED   43  5  3  5
  DEL PEAK 33(17P12) WILD-TYPE 80  2  9 20
D62V10, multiclass
    clus
vv   DEL PEAK 33(17P12) MUTATED DEL PEAK 33(17P12) WILD-TYPE
  R0                         43                           80
  R1                          5                            2
  R2                          3                            9
  RX                          5                           20
D62V11, continuous

Clustering(63) Variable = Del Peak 34(17q24.3) mutation analysis
D63V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 34(17Q24.3) MUTATED    17   4
  DEL PEAK 34(17Q24.3) WILD-TYPE 105  14
  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                            21                            119 
  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                             4                             14 
$`DEL PEAK 34(17Q24.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-A4J1 TCGA-BR-A4J8 
        1.35         0.62         1.05         4.54         0.72         0.23 
TCGA-BR-A4PF TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 
        0.72        20.02        54.05         4.01        14.01        47.05 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6526 TCGA-D7-6528 
        7.07         1.02         4.01         4.54         6.61         1.68 
TCGA-D7-6820 TCGA-D7-6822 TCGA-FP-8099 
        2.93         4.27         1.02 

$`DEL PEAK 34(17Q24.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 
        0.79         0.79         0.53         0.43         0.13         0.10 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       18.94        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        31.04        65.10        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        7.99         8.65         3.58         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 
        8.19         6.90         0.69         5.95         4.14         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        4.70         4.04         0.62         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 
       72.23         0.39         0.20         3.02         3.58        59.05 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        0.56        26.43         6.87         3.55         2.53 

  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                          0.23                           0.07 
  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE 
                          4.01                           1.12 
[1] "0.2 - 54.0 (4.0)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 34(17Q24.3) MUTATED"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 34(17Q24.3) MUTATED"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 34(17Q24.3) MUTATED"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 34(17Q24.3) MUTATED"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 34(17Q24.3) MUTATED"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 34(17Q24.3) MUTATED" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 34(17Q24.3) MUTATED"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 34(17Q24.3) WILD-TYPE"   "DEL PEAK 34(17Q24.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 34(17Q24.3) WILD-TYPE" "DEL PEAK 34(17Q24.3) WILD-TYPE" 
[1] "hr=" "1.7"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(17Q24.3) MUTATED      9   18
  DEL PEAK 34(17Q24.3) WILD-TYPE   61   89
        clus
vv       DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  FEMALE                            9                             61
  MALE                             18                             89
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 34(17Q24.3) MUTATED                                       1
  DEL PEAK 34(17Q24.3) WILD-TYPE                                    24
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 34(17Q24.3) MUTATED                                                       14
  DEL PEAK 34(17Q24.3) WILD-TYPE                                                     73
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 34(17Q24.3) MUTATED                                           0
  DEL PEAK 34(17Q24.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 34(17Q24.3) MUTATED                                                   1
  DEL PEAK 34(17Q24.3) WILD-TYPE                                                 9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 34(17Q24.3) MUTATED                                                    0
  DEL PEAK 34(17Q24.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 34(17Q24.3) MUTATED                                                  5
  DEL PEAK 34(17Q24.3) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 34(17Q24.3) MUTATED                                                                        5
  DEL PEAK 34(17Q24.3) WILD-TYPE                                                                     31
D63V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 34(17Q24.3) MUTATED    0  7 11  5
  DEL PEAK 34(17Q24.3) WILD-TYPE  6 47 53 38
D63V5, multiclass
    clus
vv   DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  T1                            0                              6
  T2                            7                             47
  T3                           11                             53
  T4                            5                             38
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 34(17Q24.3) MUTATED    6  5  9  3
  DEL PEAK 34(17Q24.3) WILD-TYPE 50 56 20 17
D63V6, multiclass
    clus
vv   DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  N0                            6                             50
  N1                            5                             56
  N2                            9                             20
  N3                            3                             17
                                vv
clus                              M0  M1  MX
  DEL PEAK 34(17Q24.3) MUTATED    23   3   1
  DEL PEAK 34(17Q24.3) WILD-TYPE 123  15  12
D63V7, multiclass
    clus
vv   DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  M0                           23                            123
  M1                            3                             15
  MX                            1                             12
                                vv
clus                              I II III IV
  DEL PEAK 34(17Q24.3) MUTATED    2  7   8  5
  DEL PEAK 34(17Q24.3) WILD-TYPE 24 41  50 24
D63V8, multiclass
     clus
vv    DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  I                              2                             24
  II                             7                             41
  III                            8                             50
  IV                             5                             24
D63V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(17Q24.3) MUTATED      0   27
  DEL PEAK 34(17Q24.3) WILD-TYPE    5  145
     clus
vv    DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  NO                             0                              5
  YES                           27                            145
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 34(17Q24.3) MUTATED    16   2   3   6
  DEL PEAK 34(17Q24.3) WILD-TYPE 107   5   9  19
D63V10, multiclass
    clus
vv   DEL PEAK 34(17Q24.3) MUTATED DEL PEAK 34(17Q24.3) WILD-TYPE
  R0                           16                            107
  R1                            2                              5
  R2                            3                              9
  RX                            6                             19
D63V11, continuous

Clustering(64) Variable = Del Peak 35(18q21.2) mutation analysis
D64V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 35(18Q21.2) MUTATED   48  5
  DEL PEAK 35(18Q21.2) WILD-TYPE 74 13
  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                            53                             87 
  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                             5                             13 
$`DEL PEAK 35(18Q21.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7716 TCGA-BR-7722 
        0.10         1.35         0.82         1.22         0.82         0.16 
TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-A4IY TCGA-BR-A4J6 TCGA-BR-A4J8 
        4.54         0.95         0.69         0.39         0.13         0.23 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.69         0.36         0.49         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 
       27.02        52.96         8.05        54.05         4.01        47.05 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 
       12.03         4.01        55.04         8.65         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
       15.65         8.19         5.95         6.61         4.14         3.65 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        4.27         0.62         7.79         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-IN-7808 TCGA-IP-7968 
        1.02        59.05         0.56         3.55         2.53 

$`DEL PEAK 35(18Q21.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 
        5.62         0.95         1.41         1.35         0.85         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7851 TCGA-BR-7958 
        1.25         0.13         1.05         0.69         0.99         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J9 
        0.79         0.72         0.79         0.53         0.43         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 
        0.72         0.82        20.02        15.95         1.02        14.01 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         1.02         6.94         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 
       70.06        15.02        28.96        31.04        65.10        21.07 
TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 
        7.99         3.58         9.63         6.90         0.69         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.70         4.04         2.93         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-HJ-7597 TCGA-IN-7806 
        0.39        26.43         6.87 

  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                         59.05                          72.23 
  DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE 
                          3.55                           1.05 
[1] "0.1 - 59.0 (3.5)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
  "DEL PEAK 35(18Q21.2) MUTATED" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 35(18Q21.2) WILD-TYPE"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 35(18Q21.2) WILD-TYPE" "DEL PEAK 35(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 35(18Q21.2) MUTATED"   "DEL PEAK 35(18Q21.2) MUTATED" 
[1] "hr=" "1.7"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(18Q21.2) MUTATED     27   42
  DEL PEAK 35(18Q21.2) WILD-TYPE   43   65
        clus
vv       DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  FEMALE                           27                             43
  MALE                             42                             65
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 35(18Q21.2) MUTATED                                      11
  DEL PEAK 35(18Q21.2) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 35(18Q21.2) MUTATED                                                       30
  DEL PEAK 35(18Q21.2) WILD-TYPE                                                     57
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 35(18Q21.2) MUTATED                                           0
  DEL PEAK 35(18Q21.2) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 35(18Q21.2) MUTATED                                                   3
  DEL PEAK 35(18Q21.2) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 35(18Q21.2) MUTATED                                                    2
  DEL PEAK 35(18Q21.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 35(18Q21.2) MUTATED                                                  5
  DEL PEAK 35(18Q21.2) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 35(18Q21.2) MUTATED                                                                       15
  DEL PEAK 35(18Q21.2) WILD-TYPE                                                                     21
D64V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 35(18Q21.2) MUTATED    0 25 31 10
  DEL PEAK 35(18Q21.2) WILD-TYPE  6 29 33 33
D64V5, multiclass
    clus
vv   DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  T1                            0                              6
  T2                           25                             29
  T3                           31                             33
  T4                           10                             33
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 35(18Q21.2) MUTATED   15 24 12 13
  DEL PEAK 35(18Q21.2) WILD-TYPE 41 37 17  7
D64V6, multiclass
    clus
vv   DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  N0                           15                             41
  N1                           24                             37
  N2                           12                             17
  N3                           13                              7
                                vv
clus                             M0 M1 MX
  DEL PEAK 35(18Q21.2) MUTATED   54  8  7
  DEL PEAK 35(18Q21.2) WILD-TYPE 92 10  6
D64V7, multiclass
    clus
vv   DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  M0                           54                             92
  M1                            8                             10
  MX                            7                              6
                                vv
clus                              I II III IV
  DEL PEAK 35(18Q21.2) MUTATED    8 17  24 14
  DEL PEAK 35(18Q21.2) WILD-TYPE 18 31  34 15
D64V8, multiclass
     clus
vv    DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  I                              8                             18
  II                            17                             31
  III                           24                             34
  IV                            14                             15
D64V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(18Q21.2) MUTATED      2   67
  DEL PEAK 35(18Q21.2) WILD-TYPE    3  105
     clus
vv    DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  NO                             2                              3
  YES                           67                            105
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 35(18Q21.2) MUTATED   39  6  5 10
  DEL PEAK 35(18Q21.2) WILD-TYPE 84  1  7 15
D64V10, multiclass
    clus
vv   DEL PEAK 35(18Q21.2) MUTATED DEL PEAK 35(18Q21.2) WILD-TYPE
  R0                           39                             84
  R1                            6                              1
  R2                            5                              7
  RX                           10                             15
D64V11, continuous

Clustering(65) Variable = Del Peak 36(18q23) mutation analysis
D65V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 36(18Q23) MUTATED   43  4
  DEL PEAK 36(18Q23) WILD-TYPE 79 14
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                          47                           93 
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                           4                           14 
$`DEL PEAK 36(18Q23) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 
        0.10         1.35         0.82         1.22         1.48         1.05 
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7957 TCGA-BR-A4IY TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.82         4.54         0.69         0.39         0.13         0.23 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        0.69         0.49         0.30         0.07        20.02         3.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4466 
       52.96        54.05         4.01        47.05        19.07        18.94 
TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5730 
        7.07         1.02         1.02         1.02        12.03         4.01 
TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6525 
       55.04         8.65         4.54         9.80        15.65         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6818 TCGA-EQ-5647 TCGA-EQ-8122 
        6.61         4.14         3.65         4.04         0.62         7.79 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8631 
        0.20         3.02         3.58         1.02         0.56 

$`DEL PEAK 36(18Q23) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 
        5.62         0.95         1.41         1.35         0.85         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.66         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7958 
        0.13         0.69         0.16         0.99         0.95         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J9 
        0.79         0.72         0.79         0.53         0.43         0.10 
TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5800 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.72         0.82         0.36        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
        8.05        14.01        29.98        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 
        8.98        12.00         1.02         1.02         6.94         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6521 
       65.10        21.07         7.99         3.58         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 
        6.90         0.69         1.68         4.70         2.93         4.27 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-8209 TCGA-HJ-7597 
        6.54         2.01        72.23         0.39        59.05        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                        0.07                         0.10 
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                       55.04                        72.23 
  DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE 
                        3.02                         1.08 
[1] "0.1 - 55.0 (3.0)" "0.1 - 72.2 (1.1)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-CD-5798 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CD-5803                   TCGA-CG-4300 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4301                   TCGA-CG-4304 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5719                   TCGA-CG-5720 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6519                   TCGA-D7-6520 
  "DEL PEAK 36(18Q23) MUTATED" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6526                   TCGA-D7-6527 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-FP-7998                   TCGA-FP-8099 
  "DEL PEAK 36(18Q23) MUTATED"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-FP-8209                   TCGA-FP-8631 
"DEL PEAK 36(18Q23) WILD-TYPE"   "DEL PEAK 36(18Q23) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 36(18Q23) WILD-TYPE" "DEL PEAK 36(18Q23) WILD-TYPE" 
[1] "hr=" "1.6"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 36(18Q23) MUTATED     26   38
  DEL PEAK 36(18Q23) WILD-TYPE   44   69
        clus
vv       DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  FEMALE                         26                           44
  MALE                           38                           69
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 36(18Q23) MUTATED                                       9
  DEL PEAK 36(18Q23) WILD-TYPE                                    16
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 36(18Q23) MUTATED                                                       30
  DEL PEAK 36(18Q23) WILD-TYPE                                                     57
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 36(18Q23) MUTATED                                           0
  DEL PEAK 36(18Q23) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 36(18Q23) MUTATED                                                   4
  DEL PEAK 36(18Q23) WILD-TYPE                                                 6
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 36(18Q23) MUTATED                                                    1
  DEL PEAK 36(18Q23) WILD-TYPE                                                  2
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 36(18Q23) MUTATED                                                  4
  DEL PEAK 36(18Q23) WILD-TYPE                                                6
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 36(18Q23) MUTATED                                                                       14
  DEL PEAK 36(18Q23) WILD-TYPE                                                                     22
D65V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  DEL PEAK 36(18Q23) MUTATED    0 22 29  9
  DEL PEAK 36(18Q23) WILD-TYPE  6 32 35 34
D65V5, multiclass
    clus
vv   DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  T1                          0                            6
  T2                         22                           32
  T3                         29                           35
  T4                          9                           34
                              vv
clus                           N0 N1 N2 N3
  DEL PEAK 36(18Q23) MUTATED   14 22 11 13
  DEL PEAK 36(18Q23) WILD-TYPE 42 39 18  7
D65V6, multiclass
    clus
vv   DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  N0                         14                           42
  N1                         22                           39
  N2                         11                           18
  N3                         13                            7
                              vv
clus                           M0 M1 MX
  DEL PEAK 36(18Q23) MUTATED   50  7  7
  DEL PEAK 36(18Q23) WILD-TYPE 96 11  6
D65V7, multiclass
    clus
vv   DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  M0                         50                           96
  M1                          7                           11
  MX                          7                            6
                              vv
clus                            I II III IV
  DEL PEAK 36(18Q23) MUTATED    6 18  20 14
  DEL PEAK 36(18Q23) WILD-TYPE 20 30  38 15
D65V8, multiclass
     clus
vv    DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  I                            6                           20
  II                          18                           30
  III                         20                           38
  IV                          14                           15
D65V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 36(18Q23) MUTATED      4   60
  DEL PEAK 36(18Q23) WILD-TYPE    1  112
     clus
vv    DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  NO                           4                            1
  YES                         60                          112
                              vv
clus                           R0 R1 R2 RX
  DEL PEAK 36(18Q23) MUTATED   37  6  5 10
  DEL PEAK 36(18Q23) WILD-TYPE 86  1  7 15
D65V10, multiclass
    clus
vv   DEL PEAK 36(18Q23) MUTATED DEL PEAK 36(18Q23) WILD-TYPE
  R0                         37                           86
  R1                          6                            1
  R2                          5                            7
  RX                         10                           15
D65V11, continuous

Clustering(66) Variable = Del Peak 37(19p13.3) mutation analysis
D66V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 37(19P13.3) MUTATED   34  6
  DEL PEAK 37(19P13.3) WILD-TYPE 88 12
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                            40                            100 
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                             6                             12 
$`DEL PEAK 37(19P13.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        1.35         0.62         1.48         0.82         4.54         0.95 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        0.39         0.72         0.72         0.69         0.36         0.30 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 
       20.02        27.02        52.96        54.05         4.01        29.98 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5725 
       19.07        21.99        18.94         1.02        12.03        15.02 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6527 
        4.01        55.04         3.58         9.63         5.95         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6875 TCGA-FP-7916 
        3.65         4.70         4.04         2.93        72.23         3.02 
TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7806 TCGA-IP-7968 
        1.02         0.56         6.87         2.53 

$`DEL PEAK 37(19P13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 
        0.46         1.25         0.13         1.05         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 
        0.43         0.13         0.23         0.10         0.82         0.49 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 
        0.07         3.02        15.95         1.02         8.05        14.01 
TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 
       47.05        12.03         1.02         8.98         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        5.98         0.95        70.06        28.96        31.04        65.10 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       21.07         7.99         8.65         4.54         9.80        15.65 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6822 
        8.19         6.90         0.69         6.61         1.68         4.27 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        0.62         7.79         6.54         2.01         0.39         0.20 
TCGA-FP-7998 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7808 
        3.58        59.05        26.43         3.55 

  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                          0.30                           0.07 
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE 
                          4.01                           1.02 
[1] "0.3 - 72.2 (4.0)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 37(19P13.3) MUTATED"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 37(19P13.3) MUTATED" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 37(19P13.3) WILD-TYPE"   "DEL PEAK 37(19P13.3) MUTATED" 
[1] "hr=" "1.7"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(19P13.3) MUTATED     13   40
  DEL PEAK 37(19P13.3) WILD-TYPE   57   67
        clus
vv       DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  FEMALE                           13                             57
  MALE                             40                             67
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 37(19P13.3) MUTATED                                       6
  DEL PEAK 37(19P13.3) WILD-TYPE                                    19
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 37(19P13.3) MUTATED                                                       26
  DEL PEAK 37(19P13.3) WILD-TYPE                                                     61
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 37(19P13.3) MUTATED                                           0
  DEL PEAK 37(19P13.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 37(19P13.3) MUTATED                                                   2
  DEL PEAK 37(19P13.3) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 37(19P13.3) MUTATED                                                    2
  DEL PEAK 37(19P13.3) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 37(19P13.3) MUTATED                                                  5
  DEL PEAK 37(19P13.3) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 37(19P13.3) MUTATED                                                                       11
  DEL PEAK 37(19P13.3) WILD-TYPE                                                                     25
D66V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 37(19P13.3) MUTATED    1 19 21  8
  DEL PEAK 37(19P13.3) WILD-TYPE  5 35 43 35
D66V5, multiclass
    clus
vv   DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  T1                            1                              5
  T2                           19                             35
  T3                           21                             43
  T4                            8                             35
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 37(19P13.3) MUTATED   14 17 10  8
  DEL PEAK 37(19P13.3) WILD-TYPE 42 44 19 12
D66V6, multiclass
    clus
vv   DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  N0                           14                             42
  N1                           17                             44
  N2                           10                             19
  N3                            8                             12
                                vv
clus                              M0  M1  MX
  DEL PEAK 37(19P13.3) MUTATED    43   4   6
  DEL PEAK 37(19P13.3) WILD-TYPE 103  14   7
D66V7, multiclass
    clus
vv   DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  M0                           43                            103
  M1                            4                             14
  MX                            6                              7
                                vv
clus                              I II III IV
  DEL PEAK 37(19P13.3) MUTATED    7 16  16  9
  DEL PEAK 37(19P13.3) WILD-TYPE 19 32  42 20
D66V8, multiclass
     clus
vv    DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  I                              7                             19
  II                            16                             32
  III                           16                             42
  IV                             9                             20
D66V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(19P13.3) MUTATED      4   49
  DEL PEAK 37(19P13.3) WILD-TYPE    1  123
     clus
vv    DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  NO                             4                              1
  YES                           49                            123
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 37(19P13.3) MUTATED   36  2  4  6
  DEL PEAK 37(19P13.3) WILD-TYPE 87  5  8 19
D66V10, multiclass
    clus
vv   DEL PEAK 37(19P13.3) MUTATED DEL PEAK 37(19P13.3) WILD-TYPE
  R0                           36                             87
  R1                            2                              5
  R2                            4                              8
  RX                            6                             19
D66V11, continuous

Clustering(67) Variable = Del Peak 38(19q13.11) mutation analysis
D67V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 38(19Q13.11) MUTATED    17   3
  DEL PEAK 38(19Q13.11) WILD-TYPE 105  15
  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                             20                             120 
  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                              3                              15 
$`DEL PEAK 38(19Q13.11) MUTATED`
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-A4PF TCGA-CD-5799 
        1.48         1.05         4.54         0.95         0.72         0.69 
TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4440 TCGA-CG-4466 TCGA-CG-5724 
        0.36        20.02        27.02         4.01        18.94        12.03 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-5647 
        6.61         4.14         1.68         4.70         2.93         0.62 
TCGA-FP-8099 TCGA-FP-8631 
        1.02         0.56 

$`DEL PEAK 38(19Q13.11) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 
        0.26         1.22         0.46         1.25         0.13         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.69         0.16         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.79         0.72         0.79         0.53         0.43         0.13 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.23         0.10         0.82         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-8122 
        0.69         5.95         3.65         4.04         4.27         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.58        59.05        26.43         6.87         3.55         2.53 

  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                           0.36                            0.07 
  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                          27.02                           72.23 
  DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE 
                          2.305                           1.200 
[1] "0.4 - 27.0 (2.3)" "0.1 - 72.2 (1.2)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 38(19Q13.11) MUTATED"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 38(19Q13.11) MUTATED"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 38(19Q13.11) MUTATED"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 38(19Q13.11) MUTATED"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 38(19Q13.11) MUTATED"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 38(19Q13.11) MUTATED"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 38(19Q13.11) MUTATED" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 38(19Q13.11) WILD-TYPE"   "DEL PEAK 38(19Q13.11) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
[1] "hr=" "1.7"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 38(19Q13.11) MUTATED      8   16
  DEL PEAK 38(19Q13.11) WILD-TYPE   62   91
        clus
vv       DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  FEMALE                             8                              62
  MALE                              16                              91
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 38(19Q13.11) MUTATED                                       2
  DEL PEAK 38(19Q13.11) WILD-TYPE                                    23
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 38(19Q13.11) MUTATED                                                       12
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                     75
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 38(19Q13.11) MUTATED                                           0
  DEL PEAK 38(19Q13.11) WILD-TYPE                                         1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 38(19Q13.11) MUTATED                                                   0
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                10
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 38(19Q13.11) MUTATED                                                    2
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                  1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 38(19Q13.11) MUTATED                                                  4
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 38(19Q13.11) MUTATED                                                                        4
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                                     32
D67V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 38(19Q13.11) MUTATED    0  7 12  3
  DEL PEAK 38(19Q13.11) WILD-TYPE  6 47 52 40
D67V5, multiclass
    clus
vv   DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  T1                             0                               6
  T2                             7                              47
  T3                            12                              52
  T4                             3                              40
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 38(19Q13.11) MUTATED    7  5  5  5
  DEL PEAK 38(19Q13.11) WILD-TYPE 49 56 24 15
D67V6, multiclass
    clus
vv   DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  N0                             7                              49
  N1                             5                              56
  N2                             5                              24
  N3                             5                              15
                                 vv
clus                               M0  M1  MX
  DEL PEAK 38(19Q13.11) MUTATED    19   3   2
  DEL PEAK 38(19Q13.11) WILD-TYPE 127  15  11
D67V7, multiclass
    clus
vv   DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  M0                            19                             127
  M1                             3                              15
  MX                             2                              11
                                 vv
clus                               I II III IV
  DEL PEAK 38(19Q13.11) MUTATED    3  8   8  3
  DEL PEAK 38(19Q13.11) WILD-TYPE 23 40  50 26
D67V8, multiclass
     clus
vv    DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  I                               3                              23
  II                              8                              40
  III                             8                              50
  IV                              3                              26
D67V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 38(19Q13.11) MUTATED      1   23
  DEL PEAK 38(19Q13.11) WILD-TYPE    4  149
     clus
vv    DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  NO                              1                               4
  YES                            23                             149
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 38(19Q13.11) MUTATED    16   0   3   3
  DEL PEAK 38(19Q13.11) WILD-TYPE 107   7   9  22
D67V10, multiclass
    clus
vv   DEL PEAK 38(19Q13.11) MUTATED DEL PEAK 38(19Q13.11) WILD-TYPE
  R0                            16                             107
  R1                             0                               7
  R2                             3                               9
  RX                             3                              22
D67V11, continuous

Clustering(68) Variable = Del Peak 39(20p12.1) mutation analysis
D68V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 39(20P12.1) MUTATED    16   5
  DEL PEAK 39(20P12.1) WILD-TYPE 106  13
  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                            21                            119 
  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                             5                             13 
$`DEL PEAK 39(20P12.1) MUTATED`
TCGA-B7-5816 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-7723 TCGA-BR-A4IY TCGA-BR-A4J1 
        5.62         0.82         0.62         4.54         0.39         0.72 
TCGA-BR-A4PF TCGA-CD-5800 TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 
        0.72         0.36         3.02         8.05        54.05        14.01 
TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5725 TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6822 
       12.00         6.94        15.02        15.65         6.61         4.27 
TCGA-EQ-5647 TCGA-FP-7735 TCGA-IP-7968 
        0.62         0.39         2.53 

$`DEL PEAK 39(20P12.1) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        0.10         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        1.48         0.76         0.20         0.59         0.92         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.69         0.49         0.30         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4443 
       27.02        15.95         1.02        52.96         4.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 
       18.94         7.07         1.02         1.02         1.02         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 
        7.99         8.65         3.58         4.54         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 
        3.65         4.70         4.04         2.93         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
        2.01        72.23         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       59.05         0.56        26.43         6.87         3.55 

  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                          0.36                           0.07 
  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE 
                          4.27                           1.18 
[1] "0.4 - 54.0 (4.3)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 39(20P12.1) MUTATED" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(20P12.1) WILD-TYPE"   "DEL PEAK 39(20P12.1) MUTATED" 
[1] "hr=" "2.7"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(20P12.1) MUTATED     10   17
  DEL PEAK 39(20P12.1) WILD-TYPE   60   90
        clus
vv       DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  FEMALE                           10                             60
  MALE                             17                             90
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 39(20P12.1) MUTATED                                       2
  DEL PEAK 39(20P12.1) WILD-TYPE                                    23
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 39(20P12.1) MUTATED                                                       17
  DEL PEAK 39(20P12.1) WILD-TYPE                                                     70
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 39(20P12.1) MUTATED                                           0
  DEL PEAK 39(20P12.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 39(20P12.1) MUTATED                                                   1
  DEL PEAK 39(20P12.1) WILD-TYPE                                                 9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 39(20P12.1) MUTATED                                                    1
  DEL PEAK 39(20P12.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 39(20P12.1) MUTATED                                                  2
  DEL PEAK 39(20P12.1) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 39(20P12.1) MUTATED                                                                        3
  DEL PEAK 39(20P12.1) WILD-TYPE                                                                     33
D68V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 39(20P12.1) MUTATED    0 10  7  8
  DEL PEAK 39(20P12.1) WILD-TYPE  6 44 57 35
D68V5, multiclass
    clus
vv   DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  T1                            0                              6
  T2                           10                             44
  T3                            7                             57
  T4                            8                             35
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 39(20P12.1) MUTATED    9  8  6  2
  DEL PEAK 39(20P12.1) WILD-TYPE 47 53 23 18
D68V6, multiclass
    clus
vv   DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  N0                            9                             47
  N1                            8                             53
  N2                            6                             23
  N3                            2                             18
                                vv
clus                              M0  M1  MX
  DEL PEAK 39(20P12.1) MUTATED    22   2   3
  DEL PEAK 39(20P12.1) WILD-TYPE 124  16  10
D68V7, multiclass
    clus
vv   DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  M0                           22                            124
  M1                            2                             16
  MX                            3                             10
                                vv
clus                              I II III IV
  DEL PEAK 39(20P12.1) MUTATED    5  7   8  5
  DEL PEAK 39(20P12.1) WILD-TYPE 21 41  50 24
D68V8, multiclass
     clus
vv    DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  I                              5                             21
  II                             7                             41
  III                            8                             50
  IV                             5                             24
D68V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(20P12.1) MUTATED      2   25
  DEL PEAK 39(20P12.1) WILD-TYPE    3  147
     clus
vv    DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  NO                             2                              3
  YES                           25                            147
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 39(20P12.1) MUTATED    19   1   2   3
  DEL PEAK 39(20P12.1) WILD-TYPE 104   6  10  22
D68V10, multiclass
    clus
vv   DEL PEAK 39(20P12.1) MUTATED DEL PEAK 39(20P12.1) WILD-TYPE
  R0                           19                            104
  R1                            1                              6
  R2                            2                             10
  RX                            3                             22
D68V11, continuous

Clustering(69) Variable = Del Peak 40(20p12.1) mutation analysis
D69V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 40(20P12.1) MUTATED    16   5
  DEL PEAK 40(20P12.1) WILD-TYPE 106  13
  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                            21                            119 
  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                             5                             13 
$`DEL PEAK 40(20P12.1) MUTATED`
TCGA-B7-5816 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-7723 TCGA-BR-A4IY TCGA-BR-A4J1 
        5.62         0.82         0.62         4.54         0.39         0.72 
TCGA-BR-A4PF TCGA-CD-5800 TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 
        0.72         0.36         3.02         8.05        54.05        14.01 
TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5725 TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6822 
       12.00         6.94        15.02        15.65         6.61         4.27 
TCGA-EQ-5647 TCGA-FP-7735 TCGA-IP-7968 
        0.62         0.39         2.53 

$`DEL PEAK 40(20P12.1) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        0.10         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        1.48         0.76         0.20         0.59         0.92         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.69         0.49         0.30         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4443 
       27.02        15.95         1.02        52.96         4.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 
       18.94         7.07         1.02         1.02         1.02         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 
        7.99         8.65         3.58         4.54         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 
        3.65         4.70         4.04         2.93         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
        2.01        72.23         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       59.05         0.56        26.43         6.87         3.55 

  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                          0.36                           0.07 
  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE 
                          4.27                           1.18 
[1] "0.4 - 54.0 (4.3)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 40(20P12.1) MUTATED" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 40(20P12.1) WILD-TYPE"   "DEL PEAK 40(20P12.1) MUTATED" 
[1] "hr=" "2.7"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(20P12.1) MUTATED     10   17
  DEL PEAK 40(20P12.1) WILD-TYPE   60   90
        clus
vv       DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  FEMALE                           10                             60
  MALE                             17                             90
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 40(20P12.1) MUTATED                                       2
  DEL PEAK 40(20P12.1) WILD-TYPE                                    23
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 40(20P12.1) MUTATED                                                       17
  DEL PEAK 40(20P12.1) WILD-TYPE                                                     70
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 40(20P12.1) MUTATED                                           0
  DEL PEAK 40(20P12.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 40(20P12.1) MUTATED                                                   1
  DEL PEAK 40(20P12.1) WILD-TYPE                                                 9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 40(20P12.1) MUTATED                                                    1
  DEL PEAK 40(20P12.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 40(20P12.1) MUTATED                                                  2
  DEL PEAK 40(20P12.1) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 40(20P12.1) MUTATED                                                                        3
  DEL PEAK 40(20P12.1) WILD-TYPE                                                                     33
D69V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 40(20P12.1) MUTATED    0 10  7  8
  DEL PEAK 40(20P12.1) WILD-TYPE  6 44 57 35
D69V5, multiclass
    clus
vv   DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  T1                            0                              6
  T2                           10                             44
  T3                            7                             57
  T4                            8                             35
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 40(20P12.1) MUTATED    9  8  6  2
  DEL PEAK 40(20P12.1) WILD-TYPE 47 53 23 18
D69V6, multiclass
    clus
vv   DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  N0                            9                             47
  N1                            8                             53
  N2                            6                             23
  N3                            2                             18
                                vv
clus                              M0  M1  MX
  DEL PEAK 40(20P12.1) MUTATED    22   2   3
  DEL PEAK 40(20P12.1) WILD-TYPE 124  16  10
D69V7, multiclass
    clus
vv   DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  M0                           22                            124
  M1                            2                             16
  MX                            3                             10
                                vv
clus                              I II III IV
  DEL PEAK 40(20P12.1) MUTATED    5  7   8  5
  DEL PEAK 40(20P12.1) WILD-TYPE 21 41  50 24
D69V8, multiclass
     clus
vv    DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  I                              5                             21
  II                             7                             41
  III                            8                             50
  IV                             5                             24
D69V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(20P12.1) MUTATED      2   25
  DEL PEAK 40(20P12.1) WILD-TYPE    3  147
     clus
vv    DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  NO                             2                              3
  YES                           25                            147
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 40(20P12.1) MUTATED    19   1   2   3
  DEL PEAK 40(20P12.1) WILD-TYPE 104   6  10  22
D69V10, multiclass
    clus
vv   DEL PEAK 40(20P12.1) MUTATED DEL PEAK 40(20P12.1) WILD-TYPE
  R0                           19                            104
  R1                            1                              6
  R2                            2                             10
  RX                            3                             22
D69V11, continuous

Clustering(70) Variable = Del Peak 41(21q11.2) mutation analysis
D70V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 41(21Q11.2) MUTATED   35  7
  DEL PEAK 41(21Q11.2) WILD-TYPE 87 11
  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                            42                             98 
  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                             7                             11 
$`DEL PEAK 41(21Q11.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6803 
        0.10         1.35         1.35         0.82         0.62         0.66 
TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-A4J1 TCGA-BR-A4J8 
        1.25         1.05         0.82         4.54         0.72         0.23 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 
        0.10         0.72        20.02        54.05         4.01        47.05 
TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
       12.03        18.94         1.02         6.94         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5728 TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       12.03        65.10         4.01         4.54         9.80        15.65 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 
        5.95         6.61         3.65         4.70         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7829 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        0.62        72.23         0.20        26.43         6.87         2.53 

$`DEL PEAK 41(21Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 
        5.62         0.95         1.41         0.85         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        2.17         0.99         1.22         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7717 
        0.26         1.22         1.48         0.46         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-CD-5798 
        0.79         0.79         0.53         0.43         0.13         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.69         0.36         0.49         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4441 
       27.02        15.95         1.02        52.96         8.05        14.01 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       29.98        19.07        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
       12.00         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5732 TCGA-CG-5733 
       70.06        15.02        28.96        31.04        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        7.99         8.65         3.58         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-EQ-8122 TCGA-F1-6177 
        0.69         4.14         1.68         4.04         7.79         6.54 
TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        2.01         0.39         3.02         3.58         1.02        59.05 
TCGA-FP-8631 TCGA-IN-7808 
        0.56         3.55 

  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE 
                          3.83                           1.02 
[1] "0.1 - 72.2 (3.8)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5719                     TCGA-CG-5720 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-CG-5730                     TCGA-CG-5732 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6526                     TCGA-D7-6527 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-D7-6817                     TCGA-D7-6818 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
  "DEL PEAK 41(21Q11.2) MUTATED" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 41(21Q11.2) MUTATED"   "DEL PEAK 41(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(21Q11.2) WILD-TYPE"   "DEL PEAK 41(21Q11.2) MUTATED" 
[1] "hr=" "1.1"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(21Q11.2) MUTATED     23   31
  DEL PEAK 41(21Q11.2) WILD-TYPE   47   76
        clus
vv       DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  FEMALE                           23                             47
  MALE                             31                             76
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 41(21Q11.2) MUTATED                                       8
  DEL PEAK 41(21Q11.2) WILD-TYPE                                    17
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 41(21Q11.2) MUTATED                                                       25
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                     62
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 41(21Q11.2) MUTATED                                           1
  DEL PEAK 41(21Q11.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 41(21Q11.2) MUTATED                                                   4
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 41(21Q11.2) MUTATED                                                    0
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 41(21Q11.2) MUTATED                                                  5
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 41(21Q11.2) MUTATED                                                                        9
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                                     27
D70V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 41(21Q11.2) MUTATED    0 20 24  7
  DEL PEAK 41(21Q11.2) WILD-TYPE  6 34 40 36
D70V5, multiclass
    clus
vv   DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  T1                            0                              6
  T2                           20                             34
  T3                           24                             40
  T4                            7                             36
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 41(21Q11.2) MUTATED   15 18 10  8
  DEL PEAK 41(21Q11.2) WILD-TYPE 41 43 19 12
D70V6, multiclass
    clus
vv   DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  N0                           15                             41
  N1                           18                             43
  N2                           10                             19
  N3                            8                             12
                                vv
clus                              M0  M1  MX
  DEL PEAK 41(21Q11.2) MUTATED    44   5   5
  DEL PEAK 41(21Q11.2) WILD-TYPE 102  13   8
D70V7, multiclass
    clus
vv   DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  M0                           44                            102
  M1                            5                             13
  MX                            5                              8
                                vv
clus                              I II III IV
  DEL PEAK 41(21Q11.2) MUTATED    8 14  19  9
  DEL PEAK 41(21Q11.2) WILD-TYPE 18 34  39 20
D70V8, multiclass
     clus
vv    DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  I                              8                             18
  II                            14                             34
  III                           19                             39
  IV                             9                             20
D70V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(21Q11.2) MUTATED      2   52
  DEL PEAK 41(21Q11.2) WILD-TYPE    3  120
     clus
vv    DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  NO                             2                              3
  YES                           52                            120
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 41(21Q11.2) MUTATED   39  4  4  6
  DEL PEAK 41(21Q11.2) WILD-TYPE 84  3  8 19
D70V10, multiclass
    clus
vv   DEL PEAK 41(21Q11.2) MUTATED DEL PEAK 41(21Q11.2) WILD-TYPE
  R0                           39                             84
  R1                            4                              3
  R2                            4                              8
  RX                            6                             19
D70V11, continuous

Clustering(71) Variable = Del Peak 42(21q22.13) mutation analysis
D71V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 42(21Q22.13) MUTATED   36  9
  DEL PEAK 42(21Q22.13) WILD-TYPE 86  9
  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                             45                              95 
  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                              9                               9 
$`DEL PEAK 42(21Q22.13) MUTATED`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6803 
        0.10         1.35         1.35         0.82         0.62         0.66 
TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-A4IY TCGA-BR-A4J1 
        1.25         1.05         0.82         4.54         0.39         0.72 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4440 
        0.23         0.10         0.72        20.02        54.05         4.01 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
       47.05        19.07        12.03        18.94         7.07         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5728 TCGA-CG-5730 
        6.94         1.02        12.03        15.02        65.10         4.01 
TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6525 TCGA-D7-6526 
       55.04         4.54         9.80        15.65         5.95         6.61 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7829 
        3.65         4.70         2.93         0.62        72.23         0.20 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
       26.43         6.87         2.53 

$`DEL PEAK 42(21Q22.13) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 
        5.62         0.95         1.41         0.85         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        2.17         0.99         1.22         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7717 
        0.26         1.22         1.48         0.46         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        1.48         0.76         0.20         0.59         0.92         0.79 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-CD-5798 TCGA-CD-5799 
        0.79         0.53         0.43         0.13         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        0.36         0.49         0.30         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 
       15.95         1.02        52.96         8.05        14.01        29.98 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
       21.99         1.02         8.98        12.00         1.02         1.02 
TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         0.99         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6520 
       31.04        21.07         7.99         8.65         3.58         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 
        8.19         6.90         0.69         4.14         1.68         4.04 
TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 
        4.27         7.79         6.54         2.01         0.39         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-IN-7808 
        3.58         1.02        59.05         0.56         3.55 

  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                           0.10                            0.07 
  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                          72.23                           70.06 
  DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE 
                           4.01                            1.02 
[1] "0.1 - 72.2 (4.0)" "0.1 - 70.1 (1.0)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5730                      TCGA-CG-5732 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 42(21Q22.13) MUTATED" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 42(21Q22.13) MUTATED"   "DEL PEAK 42(21Q22.13) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 42(21Q22.13) WILD-TYPE"   "DEL PEAK 42(21Q22.13) MUTATED" 
[1] "hr=" "1.1"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(21Q22.13) MUTATED     21   37
  DEL PEAK 42(21Q22.13) WILD-TYPE   49   70
        clus
vv       DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  FEMALE                            21                              49
  MALE                              37                              70
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 42(21Q22.13) MUTATED                                       8
  DEL PEAK 42(21Q22.13) WILD-TYPE                                    17
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 42(21Q22.13) MUTATED                                                       28
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                     59
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 42(21Q22.13) MUTATED                                           1
  DEL PEAK 42(21Q22.13) WILD-TYPE                                         0
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 42(21Q22.13) MUTATED                                                   5
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                 5
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 42(21Q22.13) MUTATED                                                    0
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                  3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 42(21Q22.13) MUTATED                                                  4
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 42(21Q22.13) MUTATED                                                                       10
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                                     26
D71V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 42(21Q22.13) MUTATED    0 20 25  8
  DEL PEAK 42(21Q22.13) WILD-TYPE  6 34 39 35
D71V5, multiclass
    clus
vv   DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  T1                             0                               6
  T2                            20                              34
  T3                            25                              39
  T4                             8                              35
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 42(21Q22.13) MUTATED   16 18 10 10
  DEL PEAK 42(21Q22.13) WILD-TYPE 40 43 19 10
D71V6, multiclass
    clus
vv   DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  N0                            16                              40
  N1                            18                              43
  N2                            10                              19
  N3                            10                              10
                                 vv
clus                              M0 M1 MX
  DEL PEAK 42(21Q22.13) MUTATED   49  5  4
  DEL PEAK 42(21Q22.13) WILD-TYPE 97 13  9
D71V7, multiclass
    clus
vv   DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  M0                            49                              97
  M1                             5                              13
  MX                             4                               9
                                 vv
clus                               I II III IV
  DEL PEAK 42(21Q22.13) MUTATED    7 16  18 11
  DEL PEAK 42(21Q22.13) WILD-TYPE 19 32  40 18
D71V8, multiclass
     clus
vv    DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  I                               7                              19
  II                             16                              32
  III                            18                              40
  IV                             11                              18
D71V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(21Q22.13) MUTATED      1   57
  DEL PEAK 42(21Q22.13) WILD-TYPE    4  115
     clus
vv    DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  NO                              1                               4
  YES                            57                             115
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 42(21Q22.13) MUTATED   40  5  4  8
  DEL PEAK 42(21Q22.13) WILD-TYPE 83  2  8 17
D71V10, multiclass
    clus
vv   DEL PEAK 42(21Q22.13) MUTATED DEL PEAK 42(21Q22.13) WILD-TYPE
  R0                            40                              83
  R1                             5                               2
  R2                             4                               8
  RX                             8                              17
D71V11, continuous

Clustering(72) Variable = Del Peak 43(22q13.31) mutation analysis
D72V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 43(22Q13.31) MUTATED   33  7
  DEL PEAK 43(22Q13.31) WILD-TYPE 89 11
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             40                             100 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                              7                              11 
$`DEL PEAK 43(22Q13.31) MUTATED`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 
        1.35         0.82         0.62         1.22         1.48         1.05 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4301 
        0.39         0.72         0.72         0.69         0.36         3.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 
        8.05        54.05         4.01        47.05        19.07        21.99 
TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5578 
       18.94         1.02        12.03        15.02        55.04         3.58 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        4.54        15.65         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 
        4.70         2.93         4.27         0.62         7.79         0.20 
TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        1.02         0.56        26.43         2.53 

$`DEL PEAK 43(22Q13.31) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.66         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        0.13         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5801 
        0.43         0.13         0.23         0.10         0.82         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.30         0.07        20.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
       52.96        14.01        29.98        12.03         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         0.99         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 
        9.80         9.63         8.19         6.90         0.69         3.65 
TCGA-D7-6818 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 
        4.04         6.54         2.01        72.23         0.39         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-IN-7806 TCGA-IN-7808 
        3.58        59.05         6.87         3.55 

  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                           0.20                            0.07 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                          55.04                           72.23 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                           3.30                            1.02 
[1] "0.2 - 55.0 (3.3)" "0.1 - 72.2 (1.0)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-CD-5798 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4438                      TCGA-CG-4440 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5725                      TCGA-CG-5726 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-5579                      TCGA-D7-6518 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6526                      TCGA-D7-6527 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6528                      TCGA-D7-6815 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-8209                      TCGA-FP-8631 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
[1] "hr=" "1.4"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) MUTATED     21   32
  DEL PEAK 43(22Q13.31) WILD-TYPE   49   75
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  FEMALE                            21                              49
  MALE                              32                              75
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                       4
  DEL PEAK 43(22Q13.31) WILD-TYPE                                    21
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 43(22Q13.31) MUTATED                                                       24
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                     63
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                           1
  DEL PEAK 43(22Q13.31) WILD-TYPE                                         0
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                                   4
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                 6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                                    2
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                  1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                                  7
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 43(22Q13.31) MUTATED                                                                       10
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                                     26
D72V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 43(22Q13.31) MUTATED    0 20 21  8
  DEL PEAK 43(22Q13.31) WILD-TYPE  6 34 43 35
D72V5, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  T1                             0                               6
  T2                            20                              34
  T3                            21                              43
  T4                             8                              35
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 43(22Q13.31) MUTATED   14 19 10  7
  DEL PEAK 43(22Q13.31) WILD-TYPE 42 42 19 13
D72V6, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  N0                            14                              42
  N1                            19                              42
  N2                            10                              19
  N3                             7                              13
                                 vv
clus                               M0  M1  MX
  DEL PEAK 43(22Q13.31) MUTATED    42   5   6
  DEL PEAK 43(22Q13.31) WILD-TYPE 104  13   7
D72V7, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  M0                            42                             104
  M1                             5                              13
  MX                             6                               7
                                 vv
clus                               I II III IV
  DEL PEAK 43(22Q13.31) MUTATED    8 16  16  8
  DEL PEAK 43(22Q13.31) WILD-TYPE 18 32  42 21
D72V8, multiclass
     clus
vv    DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  I                               8                              18
  II                             16                              32
  III                            16                              42
  IV                              8                              21
D72V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) MUTATED      3   50
  DEL PEAK 43(22Q13.31) WILD-TYPE    2  122
     clus
vv    DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  NO                              3                               2
  YES                            50                             122
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 43(22Q13.31) MUTATED   32  4  5  8
  DEL PEAK 43(22Q13.31) WILD-TYPE 91  3  7 17
D72V10, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  R0                            32                              91
  R1                             4                               3
  R2                             5                               7
  RX                             8                              17
D72V11, continuous

Clustering(73) Variable = Del Peak 44(Xp22.2) mutation analysis
D73V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 44(XP22.2) MUTATED    22   5
  DEL PEAK 44(XP22.2) WILD-TYPE 100  13
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           27                           113 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                            5                            13 
$`DEL PEAK 44(XP22.2) MUTATED`
TCGA-BR-6458 TCGA-BR-7716 TCGA-BR-A4J6 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5802 
        1.35         0.82         0.13         0.72         0.69         0.30 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4477 
       54.05        14.01        47.05        19.07        21.99         1.02 
TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6526 TCGA-D7-6527 
        1.02        15.02         7.99         4.54         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        1.68         3.65         4.70         4.27         0.62         7.79 
TCGA-FP-8099 TCGA-IN-7806 TCGA-IN-7808 
        1.02         6.87         3.55 

$`DEL PEAK 44(XP22.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        1.22         1.48         0.46         1.25         0.13         1.05 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.92         0.39         0.79         0.72         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.43         0.23         0.10         0.82         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 
       52.96         8.05         4.01        29.98        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
        8.98        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       21.07         8.65         3.58         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6818 TCGA-D7-6820 
        8.19         6.90         0.69         5.95         4.04         2.93 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        3.58        59.05         0.56        26.43         2.53 

  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                         0.13                          0.07 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                         4.14                          1.08 
[1] "0.1 - 54.0 (4.1)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
[1] "hr=" "1.6"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) MUTATED     11   19
  DEL PEAK 44(XP22.2) WILD-TYPE   59   88
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  FEMALE                          11                            59
  MALE                            19                            88
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 44(XP22.2) MUTATED                                       2
  DEL PEAK 44(XP22.2) WILD-TYPE                                    23
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 44(XP22.2) MUTATED                                                       10
  DEL PEAK 44(XP22.2) WILD-TYPE                                                     77
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 44(XP22.2) MUTATED                                           0
  DEL PEAK 44(XP22.2) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 44(XP22.2) MUTATED                                                   2
  DEL PEAK 44(XP22.2) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 44(XP22.2) MUTATED                                                    1
  DEL PEAK 44(XP22.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 44(XP22.2) MUTATED                                                  6
  DEL PEAK 44(XP22.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 44(XP22.2) MUTATED                                                                        8
  DEL PEAK 44(XP22.2) WILD-TYPE                                                                     28
D73V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 44(XP22.2) MUTATED    0 13 11  5
  DEL PEAK 44(XP22.2) WILD-TYPE  6 41 53 38
D73V5, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  T1                           0                             6
  T2                          13                            41
  T3                          11                            53
  T4                           5                            38
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 44(XP22.2) MUTATED    8 11  7  3
  DEL PEAK 44(XP22.2) WILD-TYPE 48 50 22 17
D73V6, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  N0                           8                            48
  N1                          11                            50
  N2                           7                            22
  N3                           3                            17
                               vv
clus                             M0  M1  MX
  DEL PEAK 44(XP22.2) MUTATED    25   3   2
  DEL PEAK 44(XP22.2) WILD-TYPE 121  15  11
D73V7, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  M0                          25                           121
  M1                           3                            15
  MX                           2                            11
                               vv
clus                             I II III IV
  DEL PEAK 44(XP22.2) MUTATED    4 11   9  4
  DEL PEAK 44(XP22.2) WILD-TYPE 22 37  49 25
D73V8, multiclass
     clus
vv    DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  I                             4                            22
  II                           11                            37
  III                           9                            49
  IV                            4                            25
D73V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) MUTATED      1   29
  DEL PEAK 44(XP22.2) WILD-TYPE    4  143
     clus
vv    DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  NO                            1                             4
  YES                          29                           143
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 44(XP22.2) MUTATED    21   1   2   2
  DEL PEAK 44(XP22.2) WILD-TYPE 102   6  10  23
D73V10, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  R0                          21                           102
  R1                           1                             6
  R2                           2                            10
  RX                           2                            23
D73V11, continuous

Clustering(74) Variable = Del Peak 45(Xp21.1) mutation analysis
D74V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 45(XP21.1) MUTATED    21   6
  DEL PEAK 45(XP21.1) WILD-TYPE 101  12
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           27                           113 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                            6                            12 
$`DEL PEAK 45(XP21.1) MUTATED`
TCGA-BR-6458 TCGA-BR-A4J6 TCGA-BR-A4PF TCGA-CD-5802 TCGA-CG-4437 TCGA-CG-4438 
        1.35         0.13         0.72         0.30         8.05        54.05 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4469 TCGA-CG-4477 
       29.98        47.05        19.07        21.99         7.07         1.02 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6525 
       12.03        15.02         7.99         4.54         9.80         5.95 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        1.68         3.65         4.70         4.27         0.62         7.79 
TCGA-FP-8099 TCGA-IN-7806 TCGA-IN-7808 
        1.02         6.87         3.55 

$`DEL PEAK 45(XP21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        1.22         1.48         0.46         1.25         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.82         0.69         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.59         0.92         0.39         0.79         0.72         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5798 TCGA-CD-5799 
        0.53         0.43         0.23         0.10         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.36         0.49         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 
       15.95         1.02        52.96         4.01        14.01        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
        1.02         8.98        18.94        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       70.06        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
       21.07         8.65         3.58        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6818 TCGA-D7-6820 
        6.90         0.69         6.61         4.14         4.04         2.93 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        3.58        59.05         0.56        26.43         2.53 

  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                         0.13                          0.07 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                         5.95                          1.02 
[1] "0.1 - 54.0 (6.0)" "0.1 - 72.2 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-CD-5798 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4438                    TCGA-CG-4440 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4444                    TCGA-CG-4449 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5725                    TCGA-CG-5726 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6817                    TCGA-D7-6818 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-FP-8209                    TCGA-FP-8631 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
[1] "hr=" "1.5"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) MUTATED      8   22
  DEL PEAK 45(XP21.1) WILD-TYPE   62   85
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  FEMALE                           8                            62
  MALE                            22                            85
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 45(XP21.1) MUTATED                                       5
  DEL PEAK 45(XP21.1) WILD-TYPE                                    20
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 45(XP21.1) MUTATED                                                        9
  DEL PEAK 45(XP21.1) WILD-TYPE                                                     78
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 45(XP21.1) MUTATED                                           0
  DEL PEAK 45(XP21.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 45(XP21.1) MUTATED                                                   2
  DEL PEAK 45(XP21.1) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 45(XP21.1) MUTATED                                                    0
  DEL PEAK 45(XP21.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 45(XP21.1) MUTATED                                                  5
  DEL PEAK 45(XP21.1) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 45(XP21.1) MUTATED                                                                        8
  DEL PEAK 45(XP21.1) WILD-TYPE                                                                     28
D74V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 45(XP21.1) MUTATED    1 12 12  4
  DEL PEAK 45(XP21.1) WILD-TYPE  5 42 52 39
D74V5, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  T1                           1                             5
  T2                          12                            42
  T3                          12                            52
  T4                           4                            39
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 45(XP21.1) MUTATED    8  9  6  6
  DEL PEAK 45(XP21.1) WILD-TYPE 48 52 23 14
D74V6, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  N0                           8                            48
  N1                           9                            52
  N2                           6                            23
  N3                           6                            14
                               vv
clus                             M0  M1  MX
  DEL PEAK 45(XP21.1) MUTATED    24   4   2
  DEL PEAK 45(XP21.1) WILD-TYPE 122  14  11
D74V7, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  M0                          24                           122
  M1                           4                            14
  MX                           2                            11
                               vv
clus                             I II III IV
  DEL PEAK 45(XP21.1) MUTATED    5  8   9  6
  DEL PEAK 45(XP21.1) WILD-TYPE 21 40  49 23
D74V8, multiclass
     clus
vv    DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  I                             5                            21
  II                            8                            40
  III                           9                            49
  IV                            6                            23
D74V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) MUTATED      0   30
  DEL PEAK 45(XP21.1) WILD-TYPE    5  142
     clus
vv    DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  NO                            0                             5
  YES                          30                           142
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 45(XP21.1) MUTATED    18   4   3   2
  DEL PEAK 45(XP21.1) WILD-TYPE 105   3   9  23
D74V10, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  R0                          18                           105
  R1                           4                             3
  R2                           3                             9
  RX                           2                            23
D74V11, continuous

Clustering(75) Variable = Del Peak 46(Xq21.33) mutation analysis
D75V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 46(XQ21.33) MUTATED    18   2
  DEL PEAK 46(XQ21.33) WILD-TYPE 104  16
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            20                            120 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                             2                             16 
$`DEL PEAK 46(XQ21.33) MUTATED`
TCGA-B7-5818 TCGA-BR-7197 TCGA-BR-7716 TCGA-BR-A4J8 TCGA-CD-5800 TCGA-CD-5802 
        0.10         1.48         0.82         0.23         0.36         0.30 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       20.02         3.02        52.96        29.98        47.05        19.07 
TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5725 TCGA-D7-6519 TCGA-D7-6528 TCGA-D7-6822 
        7.07         1.02        15.02        15.65         1.68         4.27 
TCGA-EQ-8122 TCGA-IN-7806 
        7.79         6.87 

$`DEL PEAK 46(XQ21.33) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 
        1.22         0.46         1.25         0.13         1.05         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.39         0.79         0.72         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        0.13         0.10         0.72         0.82         0.69         0.49 
TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 
        0.07        27.02        15.95         1.02         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        4.01        14.01        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       18.94        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 
        7.99         8.65         3.58         4.54         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 
        3.65         4.70         4.04         2.93         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
        1.02        59.05         0.56        26.43         3.55         2.53 

  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                         52.96                          72.23 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                          5.57                           1.10 
[1] "0.1 - 53.0 (5.6)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-CD-5798 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4301                     TCGA-CG-4304 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4444                     TCGA-CG-4449 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8631 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
[1] "hr=" "2.1"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) MUTATED      9   13
  DEL PEAK 46(XQ21.33) WILD-TYPE   61   94
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  FEMALE                            9                             61
  MALE                             13                             94
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                       3
  DEL PEAK 46(XQ21.33) WILD-TYPE                                    22
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 46(XQ21.33) MUTATED                                                        7
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                     80
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                           0
  DEL PEAK 46(XQ21.33) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                                   2
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                                    1
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                                  3
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 46(XQ21.33) MUTATED                                                                        5
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                                     31
D75V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 46(XQ21.33) MUTATED    1 11  8  2
  DEL PEAK 46(XQ21.33) WILD-TYPE  5 43 56 41
D75V5, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  T1                            1                              5
  T2                           11                             43
  T3                            8                             56
  T4                            2                             41
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 46(XQ21.33) MUTATED   10  6  2  3
  DEL PEAK 46(XQ21.33) WILD-TYPE 46 55 27 17
D75V6, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  N0                           10                             46
  N1                            6                             55
  N2                            2                             27
  N3                            3                             17
                                vv
clus                              M0  M1  MX
  DEL PEAK 46(XQ21.33) MUTATED    20   1   1
  DEL PEAK 46(XQ21.33) WILD-TYPE 126  17  12
D75V7, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  M0                           20                            126
  M1                            1                             17
  MX                            1                             12
                                vv
clus                              I II III IV
  DEL PEAK 46(XQ21.33) MUTATED    7  5   5  4
  DEL PEAK 46(XQ21.33) WILD-TYPE 19 43  53 25
D75V8, multiclass
     clus
vv    DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  I                              7                             19
  II                             5                             43
  III                            5                             53
  IV                             4                             25
D75V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) MUTATED      1   21
  DEL PEAK 46(XQ21.33) WILD-TYPE    4  151
     clus
vv    DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  NO                             1                              4
  YES                           21                            151
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 46(XQ21.33) MUTATED    15   2   1   1
  DEL PEAK 46(XQ21.33) WILD-TYPE 108   5  11  24
D75V10, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  R0                           15                            108
  R1                            2                              5
  R2                            1                             11
  RX                            1                             24
D75V11, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
                           "PATHOLOGY.T" 
                                      V6 
                           "PATHOLOGY.N" 
                                      V7 
                   "PATHOLOGICSPREAD(M)" 
                                      V8 
                           "TUMOR.STAGE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V10 
             "COMPLETENESS.OF.RESECTION" 
                                     V11 
                 "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
