
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/376229/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/UCEC-TP/2909297/1.GDAC_mergedClustering.Finished/UCEC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCEC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=UCEC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=500, in cluster file=492, common to both=492
[1]  98 492
[1] "Amp Peak  1(1p35.2) mutation analysis"
[1] 3
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           50                           442 
  AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE 
                           50                           442 
[1] "Amp Peak  2(1p34.2) mutation analysis"
[1] 3
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           63                           429 
  AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE 
                           63                           429 
[1] "Amp Peak  3(1p22.3) mutation analysis"
[1] 3
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           81                           411 
  AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE 
                           81                           411 
[1] "Amp Peak  4(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          220                           272 
  AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE 
                          220                           272 
[1] "Amp Peak  5(1q22) mutation analysis"
[1] 3
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        232                         260 
  AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE 
                        232                         260 
[1] "Amp Peak  6(1q42.3) mutation analysis"
[1] 3
  AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE 
                          203                           289 
  AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE 
                          203                           289 
[1] "Amp Peak  7(2p23.2) mutation analysis"
[1] 3
  AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE 
                          111                           381 
  AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE 
                          111                           381 
[1] "Amp Peak  8(2q13) mutation analysis"
[1] 3
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        107                         385 
  AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE 
                        107                         385 
[1] "Amp Peak  9(3p25.1) mutation analysis"
[1] 3
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           70                           422 
  AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE 
                           70                           422 
[1] "Amp Peak 10(3p14.1) mutation analysis"
[1] 3
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           56                           436 
  AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE 
                           56                           436 
[1] "Amp Peak 11(3q26.2) mutation analysis"
[1] 3
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          155                           337 
  AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE 
                          155                           337 
[1] "Amp Peak 12(3q26.2) mutation analysis"
[1] 3
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          144                           348 
  AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE 
                          144                           348 
[1] "Amp Peak 13(4p16.3) mutation analysis"
[1] 3
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           45                           447 
  AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE 
                           45                           447 
[1] "Amp Peak 14(5p15.33) mutation analysis"
[1] 3
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            77                            415 
  AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE 
                            77                            415 
[1] "Amp Peak 15(5q35.3) mutation analysis"
[1] 3
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           48                           444 
  AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE 
                           48                           444 
[1] "Amp Peak 16(6p24.2) mutation analysis"
[1] 3
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          101                           391 
  AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE 
                          101                           391 
[1] "Amp Peak 17(6q25.1) mutation analysis"
[1] 3
  AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE 
                           76                           416 
  AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE 
                           76                           416 
[1] "Amp Peak 18(7q22.1) mutation analysis"
[1] 3
  AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE 
                           82                           410 
  AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE 
                           82                           410 
[1] "Amp Peak 19(8p11.21) mutation analysis"
[1] 3
  AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE 
                           146                            346 
  AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE 
                           146                            346 
[1] "Amp Peak 20(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE 
                           188                            304 
  AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE 
                           188                            304 
[1] "Amp Peak 21(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE 
                           196                            296 
  AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE 
                           196                            296 
[1] "Amp Peak 22(9p24.2) mutation analysis"
[1] 3
  AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE 
                           57                           435 
  AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE 
                           57                           435 
[1] "Amp Peak 23(9q34.3) mutation analysis"
[1] 3
  AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE 
                           32                           460 
  AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE 
                           32                           460 
[1] "Amp Peak 24(10q22.2) mutation analysis"
[1] 3
  AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE 
                           132                            360 
  AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE 
                           132                            360 
[1] "Amp Peak 25(11p11.2) mutation analysis"
[1] 3
  AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE 
                            45                            447 
  AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE 
                            45                            447 
[1] "Amp Peak 26(11q13.2) mutation analysis"
[1] 3
  AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE 
                            68                            424 
  AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE 
                            68                            424 
[1] "Amp Peak 27(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE 
                            81                            411 
  AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE 
                            81                            411 
[1] "Amp Peak 28(12q13.11) mutation analysis"
[1] 3
  AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE 
                             79                             413 
  AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE 
                             79                             413 
[1] "Amp Peak 29(12q13.2) mutation analysis"
[1] 3
  AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE 
                            87                            405 
  AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE 
                            87                            405 
[1] "Amp Peak 30(13q34) mutation analysis"
[1] 3
  AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE 
                          49                          443 
  AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE 
                          49                          443 
[1] "Amp Peak 31(14q24.3) mutation analysis"
[1] 3
  AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE 
                            56                            436 
  AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE 
                            56                            436 
[1] "Amp Peak 32(14q32.33) mutation analysis"
[1] 3
  AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE 
                             70                             422 
  AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE 
                             70                             422 
[1] "Amp Peak 33(16p11.2) mutation analysis"
[1] 3
  AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE 
                            55                            437 
  AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE 
                            55                            437 
[1] "Amp Peak 34(17q11.2) mutation analysis"
[1] 3
  AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE 
                            63                            429 
  AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE 
                            63                            429 
[1] "Amp Peak 35(17q12) mutation analysis"
[1] 3
  AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE 
                          64                          428 
  AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE 
                          64                          428 
[1] "Amp Peak 36(17q25.1) mutation analysis"
[1] 3
  AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE 
                            90                            402 
  AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE 
                            90                            402 
[1] "Amp Peak 37(18p11.31) mutation analysis"
[1] 3
  AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE 
                             81                             411 
  AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE 
                             81                             411 
[1] "Amp Peak 38(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE 
                            62                            430 
  AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE 
                            62                            430 
[1] "Amp Peak 39(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE 
                            84                            408 
  AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE 
                            84                            408 
[1] "Amp Peak 40(19p13.11) mutation analysis"
[1] 3
  AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE 
                             83                             409 
  AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE 
                             83                             409 
[1] "Amp Peak 41(19q12) mutation analysis"
[1] 3
  AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE 
                         101                          391 
  AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE 
                         101                          391 
[1] "Amp Peak 42(20p13) mutation analysis"
[1] 3
  AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE 
                         104                          388 
  AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE 
                         104                          388 
[1] "Amp Peak 43(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE 
                            130                             362 
  AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE 
                            130                             362 
[1] "Amp Peak 44(20q13.12) mutation analysis"
[1] 3
  AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE 
                            136                             356 
  AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE 
                            136                             356 
[1] "Amp Peak 45(20q13.33) mutation analysis"
[1] 3
  AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE 
                            134                             358 
  AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE 
                            134                             358 
[1] "Amp Peak 46(22q12.2) mutation analysis"
[1] 3
  AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE 
                            54                            438 
  AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE 
                            54                            438 
[1] "Amp Peak 47(Xp11.23) mutation analysis"
[1] 3
  AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE 
                            84                            408 
  AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE 
                            84                            408 
[1] "Amp Peak 48(Xq28) mutation analysis"
[1] 3
  AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE 
                         85                         407 
  AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE 
                         85                         407 
[1] "Del Peak  1(1p36.21) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            65                            427 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                            65                            427 
[1] "Del Peak  2(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            78                            414 
  DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE 
                            78                            414 
[1] "Del Peak  3(1q43) mutation analysis"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          9                         483 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          9                         483 
[1] "Del Peak  4(2p25.3) mutation analysis"
[1] 3
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                           24                           468 
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                           24                           468 
[1] "Del Peak  5(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           44                           448 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           44                           448 
[1] "Del Peak  6(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE 
                           49                           443 
  DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE 
                           49                           443 
[1] "Del Peak  7(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           69                           423 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           69                           423 
[1] "Del Peak  8(3q13.31) mutation analysis"
[1] 3
  DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE 
                            28                            464 
  DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE 
                            28                            464 
[1] "Del Peak  9(4p16.3) mutation analysis"
[1] 3
  DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE 
                           87                           405 
  DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE 
                           87                           405 
[1] "Del Peak 10(4p15.31) mutation analysis"
[1] 3
  DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE 
                            90                            402 
  DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE 
                            90                            402 
[1] "Del Peak 11(4q22.1) mutation analysis"
[1] 3
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                           99                           393 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                           99                           393 
[1] "Del Peak 12(4q34.3) mutation analysis"
[1] 3
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          115                           377 
  DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE 
                          115                           377 
[1] "Del Peak 13(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                          100                           392 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                          100                           392 
[1] "Del Peak 14(6q26) mutation analysis"
[1] 3
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                         44                         448 
  DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE 
                         44                         448 
[1] "Del Peak 15(7p22.3) mutation analysis"
[1] 3
  DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE 
                           68                           424 
  DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE 
                           68                           424 
[1] "Del Peak 16(7q11.22) mutation analysis"
[1] 3
  DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE 
                            39                            453 
  DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE 
                            39                            453 
[1] "Del Peak 17(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           48                           444 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           48                           444 
[1] "Del Peak 18(7q36.3) mutation analysis"
[1] 3
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                           57                           435 
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                           57                           435 
[1] "Del Peak 19(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                          103                           389 
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                          103                           389 
[1] "Del Peak 20(9p23) mutation analysis"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         65                         427 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         65                         427 
[1] "Del Peak 21(9q34.11) mutation analysis"
[1] 3
  DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE 
                           122                            370 
  DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE 
                           122                            370 
[1] "Del Peak 22(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             70                             422 
  DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE 
                             70                             422 
[1] "Del Peak 23(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE 
                            93                            399 
  DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE 
                            93                            399 
[1] "Del Peak 24(11q14.1) mutation analysis"
[1] 3
  DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE 
                            63                            429 
  DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE 
                            63                            429 
[1] "Del Peak 25(11q25) mutation analysis"
[1] 3
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                          84                          408 
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                          84                          408 
[1] "Del Peak 26(12q23.1) mutation analysis"
[1] 3
  DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE 
                            48                            444 
  DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE 
                            48                            444 
[1] "Del Peak 27(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                             59                             433 
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                             59                             433 
[1] "Del Peak 28(13q11) mutation analysis"
[1] 3
  DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE 
                          86                          406 
  DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE 
                          86                          406 
[1] "Del Peak 29(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                            94                            398 
  DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE 
                            94                            398 
[1] "Del Peak 30(14q13.1) mutation analysis"
[1] 3
  DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE 
                            62                            430 
  DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE 
                            62                            430 
[1] "Del Peak 31(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE 
                           124                            368 
  DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE 
                           124                            368 
[1] "Del Peak 32(15q23) mutation analysis"
[1] 3
  DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE 
                         100                          392 
  DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE 
                         100                          392 
[1] "Del Peak 33(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            81                            411 
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            81                            411 
[1] "Del Peak 34(16q21) mutation analysis"
[1] 3
  DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE 
                         140                          352 
  DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE 
                         140                          352 
[1] "Del Peak 35(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                           150                            342 
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                           150                            342 
[1] "Del Peak 36(17p13.3) mutation analysis"
[1] 3
  DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE 
                           106                            386 
  DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE 
                           106                            386 
[1] "Del Peak 37(17p12) mutation analysis"
[1] 3
  DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE 
                         121                          371 
  DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE 
                         121                          371 
[1] "Del Peak 38(17p11.2) mutation analysis"
[1] 3
  DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE 
                           106                            386 
  DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE 
                           106                            386 
[1] "Del Peak 39(17q11.2) mutation analysis"
[1] 3
  DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE 
                            96                            396 
  DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE 
                            96                            396 
[1] "Del Peak 40(17q21.2) mutation analysis"
[1] 3
  DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE 
                           101                            391 
  DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE 
                           101                            391 
[1] "Del Peak 41(18q23) mutation analysis"
[1] 3
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                          91                          401 
  DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE 
                          91                          401 
[1] "Del Peak 42(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE 
                           141                            351 
  DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE 
                           141                            351 
[1] "Del Peak 43(19p12) mutation analysis"
[1] 3
  DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE 
                          49                          443 
  DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE 
                          49                          443 
[1] "Del Peak 44(19q13.43) mutation analysis"
[1] 3
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                             60                             432 
  DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE 
                             60                             432 
[1] "Del Peak 45(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                            30                            462 
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                            30                            462 
[1] "Del Peak 46(22q11.1) mutation analysis"
[1] 3
  DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE 
                            81                            411 
  DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE 
                            81                            411 
[1] "Del Peak 47(22q12.1) mutation analysis"
[1] 3
  DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE 
                            87                            405 
  DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE 
                            87                            405 
[1] "Del Peak 48(22q13.31) mutation analysis"
[1] 3
  DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE 
                            122                             370 
  DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE 
                            122                             370 
[1] "Del Peak 49(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE 
                            128                             364 
  DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE 
                            128                             364 
[1] "Del Peak 50(Xp21.1) mutation analysis"
[1] 3
  DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE 
                           81                           411 
  DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE 
                           81                           411 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 492 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 492 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p35.2) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           5                            13
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            14
  CLUS_3                           4                            14
D1V3, multiclass
D1V4, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          31                           112
  CLUS_2                           4                            81
  CLUS_3                           5                           144
D1V5, multiclass
D1V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P35.2) MUTATED      8    7
  AMP PEAK  1(1P35.2) WILD-TYPE   65  114
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           7                           114
  CLUS_2                           8                            65
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          27                           115
  CLUS_2                           1                           106
  CLUS_3                           1                           112
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           0                            92
  CLUS_3                           0                            65
  CLUS_4                          29                           111
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P35.2) MUTATED AMP PEAK  1(1P35.2) WILD-TYPE
  CLUS_1                          37                           157
  CLUS_2                           5                           141
  CLUS_3                           6                           133
D1V10, multiclass

Clustering(2) Variable = Amp Peak  2(1p34.2) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           7                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            14
  CLUS_3                           6                            12
D2V3, multiclass
D2V4, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          37                           106
  CLUS_2                          12                            73
  CLUS_3                           4                           145
D2V5, multiclass
D2V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1P34.2) MUTATED      6    7
  AMP PEAK  2(1P34.2) WILD-TYPE   67  114
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           7                           114
  CLUS_2                           6                            67
D2V7, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          34                           108
  CLUS_2                           2                           105
  CLUS_3                           1                           112
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           0                            92
  CLUS_3                           1                            64
  CLUS_4                          36                           104
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P34.2) MUTATED AMP PEAK  2(1P34.2) WILD-TYPE
  CLUS_1                          51                           143
  CLUS_2                           4                           142
  CLUS_3                           6                           133
D2V10, multiclass

Clustering(3) Variable = Amp Peak  3(1p22.3) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           4                             9
  CLUS_2                           6                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D3V2, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           4                            11
  CLUS_3                           5                            13
D3V3, multiclass
D3V4, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          32                           111
  CLUS_2                           7                            78
  CLUS_3                          22                           127
D3V5, multiclass
D3V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1P22.3) MUTATED      7   19
  AMP PEAK  3(1P22.3) WILD-TYPE   66  102
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          19                           102
  CLUS_2                           7                            66
D3V7, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          27                           115
  CLUS_2                           7                           100
  CLUS_3                          22                            91
D3V8, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                           8                            57
  CLUS_2                           6                            86
  CLUS_3                          15                            50
  CLUS_4                          27                           113
D3V9, multiclass
        clus
vv       AMP PEAK  3(1P22.3) MUTATED AMP PEAK  3(1P22.3) WILD-TYPE
  CLUS_1                          44                           150
  CLUS_2                           7                           139
  CLUS_3                          27                           112
D3V10, multiclass

Clustering(4) Variable = Amp Peak  4(1q21.3) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          10                             3
  CLUS_2                          12                             6
  CLUS_3                           6                             8
  CLUS_4                           1                             7
D4V2, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                           6                            14
  CLUS_2                          10                             5
  CLUS_3                          13                             5
D4V3, multiclass
D4V4, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          76                            67
  CLUS_2                          33                            52
  CLUS_3                          54                            95
D4V5, multiclass
D4V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(1Q21.3) MUTATED     25   55
  AMP PEAK  4(1Q21.3) WILD-TYPE   48   66
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          55                            66
  CLUS_2                          25                            48
D4V7, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          65                            77
  CLUS_2                          31                            76
  CLUS_3                          52                            61
D4V8, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          26                            39
  CLUS_2                          28                            64
  CLUS_3                          31                            34
  CLUS_4                          63                            77
D4V9, multiclass
        clus
vv       AMP PEAK  4(1Q21.3) MUTATED AMP PEAK  4(1Q21.3) WILD-TYPE
  CLUS_1                          99                            95
  CLUS_2                          42                           104
  CLUS_3                          72                            67
D4V10, multiclass

Clustering(5) Variable = Amp Peak  5(1q22) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        10                           3
  CLUS_2                        12                           6
  CLUS_3                         6                           8
  CLUS_4                         1                           7
D5V2, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                         6                          14
  CLUS_2                        10                           5
  CLUS_3                        13                           5
D5V3, multiclass
D5V4, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        84                          59
  CLUS_2                        34                          51
  CLUS_3                        54                          95
D5V5, multiclass
D5V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(1Q22) MUTATED     27   58
  AMP PEAK  5(1Q22) WILD-TYPE   46   63
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        58                          63
  CLUS_2                        27                          46
D5V7, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        71                          71
  CLUS_2                        34                          73
  CLUS_3                        53                          60
D5V8, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                        26                          39
  CLUS_2                        30                          62
  CLUS_3                        32                          33
  CLUS_4                        70                          70
D5V9, multiclass
        clus
vv       AMP PEAK  5(1Q22) MUTATED AMP PEAK  5(1Q22) WILD-TYPE
  CLUS_1                       105                          89
  CLUS_2                        45                         101
  CLUS_3                        75                          64
D5V10, multiclass

Clustering(6) Variable = Amp Peak  6(1q42.3) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                          10                             3
  CLUS_2                          10                             8
  CLUS_3                           5                             9
  CLUS_4                           1                             7
D6V2, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                           5                            15
  CLUS_2                           9                             6
  CLUS_3                          12                             6
D6V3, multiclass
D6V4, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                          64                            79
  CLUS_2                          27                            58
  CLUS_3                          55                            94
D6V5, multiclass
D6V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(1Q42.3) MUTATED     23   55
  AMP PEAK  6(1Q42.3) WILD-TYPE   50   66
        clus
vv       AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                          55                            66
  CLUS_2                          23                            50
D6V7, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                          60                            82
  CLUS_2                          33                            74
  CLUS_3                          54                            59
D6V8, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                          27                            38
  CLUS_2                          29                            63
  CLUS_3                          34                            31
  CLUS_4                          57                            83
D6V9, multiclass
        clus
vv       AMP PEAK  6(1Q42.3) MUTATED AMP PEAK  6(1Q42.3) WILD-TYPE
  CLUS_1                          76                           118
  CLUS_2                          46                           100
  CLUS_3                          76                            63
D6V10, multiclass

Clustering(7) Variable = Amp Peak  7(2p23.2) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           4                            14
  CLUS_3                           3                            11
  CLUS_4                           0                             8
D7V2, multiclass
        clus
vv       AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           1                            14
  CLUS_3                           4                            14
D7V3, multiclass
D7V4, multiclass
        clus
vv       AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE
  CLUS_1                          59                            84
  CLUS_2                          13                            72
  CLUS_3                          14                           135
D7V5, multiclass
D7V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(2P23.2) MUTATED     14   19
  AMP PEAK  7(2P23.2) WILD-TYPE   59  102
        clus
vv       AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE
  CLUS_1                          19                           102
  CLUS_2                          14                            59
D7V7, multiclass
        clus
vv       AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE
  CLUS_1                          46                            96
  CLUS_2                          10                            97
  CLUS_3                          14                            99
D7V8, multiclass
        clus
vv       AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE
  CLUS_1                           8                            57
  CLUS_2                           7                            85
  CLUS_3                           9                            56
  CLUS_4                          46                            94
D7V9, multiclass
        clus
vv       AMP PEAK  7(2P23.2) MUTATED AMP PEAK  7(2P23.2) WILD-TYPE
  CLUS_1                          73                           121
  CLUS_2                          16                           130
  CLUS_3                          19                           120
D7V10, multiclass

Clustering(8) Variable = Amp Peak  8(2q13) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         1                          12
  CLUS_2                         7                          11
  CLUS_3                         2                          12
  CLUS_4                         0                           8
D8V2, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         2                          18
  CLUS_2                         2                          13
  CLUS_3                         6                          12
D8V3, multiclass
D8V4, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        58                          85
  CLUS_2                        16                          69
  CLUS_3                         9                         140
D8V5, multiclass
D8V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(2Q13) MUTATED     15   15
  AMP PEAK  8(2Q13) WILD-TYPE   58  106
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        15                         106
  CLUS_2                        15                          58
D8V7, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        50                          92
  CLUS_2                         7                         100
  CLUS_3                         8                         105
D8V8, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                         6                          59
  CLUS_2                         5                          87
  CLUS_3                         4                          61
  CLUS_4                        50                          90
D8V9, multiclass
        clus
vv       AMP PEAK  8(2Q13) MUTATED AMP PEAK  8(2Q13) WILD-TYPE
  CLUS_1                        80                         114
  CLUS_2                        10                         136
  CLUS_3                        14                         125
D8V10, multiclass

Clustering(9) Variable = Amp Peak  9(3p25.1) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           6                            12
  CLUS_3                           2                            12
  CLUS_4                           0                             8
D9V2, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           1                            14
  CLUS_3                           5                            13
D9V3, multiclass
D9V4, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          35                           108
  CLUS_2                          14                            71
  CLUS_3                           7                           142
D9V5, multiclass
D9V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(3P25.1) MUTATED      8    9
  AMP PEAK  9(3P25.1) WILD-TYPE   65  112
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           9                           112
  CLUS_2                           8                            65
D9V7, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          35                           107
  CLUS_2                           7                           100
  CLUS_3                           3                           110
D9V8, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           3                            89
  CLUS_3                           8                            57
  CLUS_4                          34                           106
D9V9, multiclass
        clus
vv       AMP PEAK  9(3P25.1) MUTATED AMP PEAK  9(3P25.1) WILD-TYPE
  CLUS_1                          43                           151
  CLUS_2                          11                           135
  CLUS_3                          13                           126
D9V10, multiclass

Clustering(10) Variable = Amp Peak 10(3p14.1) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           2                            16
  CLUS_3                           1                            13
  CLUS_4                           0                             8
D10V2, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           0                            15
  CLUS_3                           2                            16
D10V3, multiclass
D10V4, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          28                           115
  CLUS_2                          11                            74
  CLUS_3                           8                           141
D10V5, multiclass
D10V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(3P14.1) MUTATED      6    6
  AMP PEAK 10(3P14.1) WILD-TYPE   67  115
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                           6                            67
D10V7, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          25                           117
  CLUS_2                           7                           100
  CLUS_3                           2                           111
D10V8, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           3                            89
  CLUS_3                           7                            58
  CLUS_4                          24                           116
D10V9, multiclass
        clus
vv       AMP PEAK 10(3P14.1) MUTATED AMP PEAK 10(3P14.1) WILD-TYPE
  CLUS_1                          32                           162
  CLUS_2                          12                           134
  CLUS_3                          10                           129
D10V10, multiclass

Clustering(11) Variable = Amp Peak 11(3q26.2) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                          12                             6
  CLUS_3                           1                            13
  CLUS_4                           0                             8
D11V2, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           1                            14
  CLUS_3                          11                             7
D11V3, multiclass
D11V4, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          86                            57
  CLUS_2                          24                            61
  CLUS_3                          19                           130
D11V5, multiclass
D11V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(3Q26.2) MUTATED     21   17
  AMP PEAK 11(3Q26.2) WILD-TYPE   52  104
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          17                           104
  CLUS_2                          21                            52
D11V7, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                          80                            62
  CLUS_2                          12                            95
  CLUS_3                           4                           109
D11V8, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           6                            86
  CLUS_3                          12                            53
  CLUS_4                          78                            62
D11V9, multiclass
        clus
vv       AMP PEAK 11(3Q26.2) MUTATED AMP PEAK 11(3Q26.2) WILD-TYPE
  CLUS_1                         111                            83
  CLUS_2                          23                           123
  CLUS_3                          16                           123
D11V10, multiclass

Clustering(12) Variable = Amp Peak 12(3q26.2) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                          11                             7
  CLUS_3                           1                            13
  CLUS_4                           0                             8
D12V2, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           1                            14
  CLUS_3                          10                             8
D12V3, multiclass
D12V4, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          84                            59
  CLUS_2                          20                            65
  CLUS_3                          16                           133
D12V5, multiclass
D12V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(3Q26.2) MUTATED     20   17
  AMP PEAK 12(3Q26.2) WILD-TYPE   53  104
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          17                           104
  CLUS_2                          20                            53
D12V7, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                          78                            64
  CLUS_2                          10                            97
  CLUS_3                           4                           109
D12V8, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           5                            87
  CLUS_3                          10                            55
  CLUS_4                          77                            63
D12V9, multiclass
        clus
vv       AMP PEAK 12(3Q26.2) MUTATED AMP PEAK 12(3Q26.2) WILD-TYPE
  CLUS_1                         104                            90
  CLUS_2                          19                           127
  CLUS_3                          16                           123
D12V10, multiclass

Clustering(13) Variable = Amp Peak 13(4p16.3) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           6                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D13V2, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            14
  CLUS_3                           5                            13
D13V3, multiclass
D13V4, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          21                           122
  CLUS_2                          10                            75
  CLUS_3                           4                           145
D13V5, multiclass
D13V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(4P16.3) MUTATED      9    2
  AMP PEAK 13(4P16.3) WILD-TYPE   64  119
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           2                           119
  CLUS_2                           9                            64
D13V7, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          28                           114
  CLUS_2                           1                           106
  CLUS_3                           1                           112
D13V8, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                           1                            64
  CLUS_2                           0                            92
  CLUS_3                           0                            65
  CLUS_4                          29                           111
D13V9, multiclass
        clus
vv       AMP PEAK 13(4P16.3) MUTATED AMP PEAK 13(4P16.3) WILD-TYPE
  CLUS_1                          36                           158
  CLUS_2                           3                           143
  CLUS_3                           4                           135
D13V10, multiclass

Clustering(14) Variable = Amp Peak 14(5p15.33) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            6                             12
  CLUS_3                            1                             13
  CLUS_4                            0                              8
D14V2, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            2                             13
  CLUS_3                            5                             13
D14V3, multiclass
D14V4, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           47                             96
  CLUS_2                           12                             73
  CLUS_3                            4                            145
D14V5, multiclass
D14V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(5P15.33) MUTATED      8   10
  AMP PEAK 14(5P15.33) WILD-TYPE   65  111
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                            8                             65
D14V7, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           42                            100
  CLUS_2                            0                            107
  CLUS_3                            6                            107
D14V8, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                            0                             92
  CLUS_3                            4                             61
  CLUS_4                           41                             99
D14V9, multiclass
        clus
vv       AMP PEAK 14(5P15.33) MUTATED AMP PEAK 14(5P15.33) WILD-TYPE
  CLUS_1                           59                            135
  CLUS_2                            3                            143
  CLUS_3                           13                            126
D14V10, multiclass

Clustering(15) Variable = Amp Peak 15(5q35.3) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           3                            15
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D15V2, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           0                            15
  CLUS_3                           3                            15
D15V3, multiclass
D15V4, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          25                           118
  CLUS_2                          10                            75
  CLUS_3                           6                           143
D15V5, multiclass
D15V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(5Q35.3) MUTATED      4    5
  AMP PEAK 15(5Q35.3) WILD-TYPE   69  116
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                           4                            69
D15V7, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          23                           119
  CLUS_2                           0                           107
  CLUS_3                           4                           109
D15V8, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                           0                            92
  CLUS_3                           5                            60
  CLUS_4                          20                           120
D15V9, multiclass
        clus
vv       AMP PEAK 15(5Q35.3) MUTATED AMP PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          38                           156
  CLUS_2                           3                           143
  CLUS_3                           6                           133
D15V10, multiclass

Clustering(16) Variable = Amp Peak 16(6p24.2) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                          10                             8
  CLUS_3                           2                            12
  CLUS_4                           0                             8
D16V2, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           1                            14
  CLUS_3                           9                             9
D16V3, multiclass
D16V4, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          57                            86
  CLUS_2                          17                            68
  CLUS_3                          10                           139
D16V5, multiclass
D16V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(6P24.2) MUTATED     12    9
  AMP PEAK 16(6P24.2) WILD-TYPE   61  112
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           9                           112
  CLUS_2                          12                            61
D16V7, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          52                            90
  CLUS_2                           7                           100
  CLUS_3                           2                           111
D16V8, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           6                            86
  CLUS_3                           4                            61
  CLUS_4                          51                            89
D16V9, multiclass
        clus
vv       AMP PEAK 16(6P24.2) MUTATED AMP PEAK 16(6P24.2) WILD-TYPE
  CLUS_1                          74                           120
  CLUS_2                          11                           135
  CLUS_3                          12                           127
D16V10, multiclass

Clustering(17) Variable = Amp Peak 17(6q25.1) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           2                            16
  CLUS_3                           2                            12
  CLUS_4                           0                             8
D17V2, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           0                            15
  CLUS_3                           2                            16
D17V3, multiclass
D17V4, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          43                           100
  CLUS_2                          11                            74
  CLUS_3                          12                           137
D17V5, multiclass
D17V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 17(6Q25.1) MUTATED     10    7
  AMP PEAK 17(6Q25.1) WILD-TYPE   63  114
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           7                           114
  CLUS_2                          10                            63
D17V7, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          36                           106
  CLUS_2                           7                           100
  CLUS_3                           5                           108
D17V8, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           5                            87
  CLUS_3                           6                            59
  CLUS_4                          37                           103
D17V9, multiclass
        clus
vv       AMP PEAK 17(6Q25.1) MUTATED AMP PEAK 17(6Q25.1) WILD-TYPE
  CLUS_1                          49                           145
  CLUS_2                          14                           132
  CLUS_3                          12                           127
D17V10, multiclass

Clustering(18) Variable = Amp Peak 18(7q22.1) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           6                            12
  CLUS_3                           2                            12
  CLUS_4                           1                             7
D18V2, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           2                            13
  CLUS_3                           5                            13
D18V3, multiclass
D18V4, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          34                           109
  CLUS_2                           8                            77
  CLUS_3                          19                           130
D18V5, multiclass
D18V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 18(7Q22.1) MUTATED      9   14
  AMP PEAK 18(7Q22.1) WILD-TYPE   64  107
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          14                           107
  CLUS_2                           9                            64
D18V7, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          31                           111
  CLUS_2                           9                            98
  CLUS_3                          11                           102
D18V8, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          11                            54
  CLUS_2                           6                            86
  CLUS_3                           7                            58
  CLUS_4                          27                           113
D18V9, multiclass
        clus
vv       AMP PEAK 18(7Q22.1) MUTATED AMP PEAK 18(7Q22.1) WILD-TYPE
  CLUS_1                          45                           149
  CLUS_2                          14                           132
  CLUS_3                          19                           120
D18V10, multiclass

Clustering(19) Variable = Amp Peak 19(8p11.21) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            9                              9
  CLUS_3                            2                             12
  CLUS_4                            0                              8
D19V2, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            1                             14
  CLUS_3                            8                             10
D19V3, multiclass
D19V4, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           58                             85
  CLUS_2                           27                             58
  CLUS_3                           36                            113
D19V5, multiclass
D19V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(8P11.21) MUTATED     16   24
  AMP PEAK 19(8P11.21) WILD-TYPE   57   97
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           24                             97
  CLUS_2                           16                             57
D19V7, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           54                             88
  CLUS_2                           19                             88
  CLUS_3                           24                             89
D19V8, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           12                             53
  CLUS_2                           15                             77
  CLUS_3                           12                             53
  CLUS_4                           58                             82
D19V9, multiclass
        clus
vv       AMP PEAK 19(8P11.21) MUTATED AMP PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           77                            117
  CLUS_2                           30                            116
  CLUS_3                           35                            104
D19V10, multiclass

Clustering(20) Variable = Amp Peak 20(8q24.21) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            9                              9
  CLUS_3                            3                             11
  CLUS_4                            0                              8
D20V2, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            1                             14
  CLUS_3                            8                             10
D20V3, multiclass
D20V4, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           84                             59
  CLUS_2                           33                             52
  CLUS_3                           42                            107
D20V5, multiclass
D20V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(8Q24.21) MUTATED     22   30
  AMP PEAK 20(8Q24.21) WILD-TYPE   51   91
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           30                             91
  CLUS_2                           22                             51
D20V7, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           74                             68
  CLUS_2                           20                             87
  CLUS_3                           25                             88
D20V8, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                           13                             52
  CLUS_2                           15                             77
  CLUS_3                           13                             52
  CLUS_4                           78                             62
D20V9, multiclass
        clus
vv       AMP PEAK 20(8Q24.21) MUTATED AMP PEAK 20(8Q24.21) WILD-TYPE
  CLUS_1                          108                             86
  CLUS_2                           37                            109
  CLUS_3                           39                            100
D20V10, multiclass

Clustering(21) Variable = Amp Peak 21(8q24.21) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                           10                              8
  CLUS_3                            2                             12
  CLUS_4                            0                              8
D21V2, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            1                             14
  CLUS_3                            9                              9
D21V3, multiclass
D21V4, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           84                             59
  CLUS_2                           34                             51
  CLUS_3                           47                            102
D21V5, multiclass
D21V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(8Q24.21) MUTATED     26   30
  AMP PEAK 21(8Q24.21) WILD-TYPE   47   91
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           30                             91
  CLUS_2                           26                             47
D21V7, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           76                             66
  CLUS_2                           25                             82
  CLUS_3                           25                             88
D21V8, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                           13                             52
  CLUS_2                           20                             72
  CLUS_3                           12                             53
  CLUS_4                           81                             59
D21V9, multiclass
        clus
vv       AMP PEAK 21(8Q24.21) MUTATED AMP PEAK 21(8Q24.21) WILD-TYPE
  CLUS_1                          113                             81
  CLUS_2                           38                            108
  CLUS_3                           40                             99
D21V10, multiclass

Clustering(22) Variable = Amp Peak 22(9p24.2) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           2                            11
  CLUS_2                           5                            13
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D22V2, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           3                            12
  CLUS_3                           4                            14
D22V3, multiclass
D22V4, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          33                           110
  CLUS_2                           7                            78
  CLUS_3                           5                           144
D22V5, multiclass
D22V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 22(9P24.2) MUTATED     11    4
  AMP PEAK 22(9P24.2) WILD-TYPE   62  117
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                          11                            62
D22V7, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          32                           110
  CLUS_2                           2                           105
  CLUS_3                           3                           110
D22V8, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           0                            92
  CLUS_3                           5                            60
  CLUS_4                          32                           108
D22V9, multiclass
        clus
vv       AMP PEAK 22(9P24.2) MUTATED AMP PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          44                           150
  CLUS_2                           2                           144
  CLUS_3                          10                           129
D22V10, multiclass

Clustering(23) Variable = Amp Peak 23(9q34.3) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           4                            14
  CLUS_3                           2                            12
  CLUS_4                           0                             8
D23V2, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           0                            15
  CLUS_3                           4                            14
D23V3, multiclass
D23V4, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          17                           126
  CLUS_2                           5                            80
  CLUS_3                           1                           148
D23V5, multiclass
D23V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 23(9Q34.3) MUTATED      5    5
  AMP PEAK 23(9Q34.3) WILD-TYPE   68  116
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                           5                            68
D23V7, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          20                           122
  CLUS_2                           1                           106
  CLUS_3                           3                           110
D23V8, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                           0                            92
  CLUS_3                           1                            64
  CLUS_4                          21                           119
D23V9, multiclass
        clus
vv       AMP PEAK 23(9Q34.3) MUTATED AMP PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          22                           172
  CLUS_2                           1                           145
  CLUS_3                           4                           135
D23V10, multiclass

Clustering(24) Variable = Amp Peak 24(10q22.2) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            8                             10
  CLUS_3                            9                              5
  CLUS_4                            1                              7
D24V2, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                            9                             11
  CLUS_2                            2                             13
  CLUS_3                            8                             10
D24V3, multiclass
D24V4, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           42                            101
  CLUS_2                           18                             67
  CLUS_3                           37                            112
D24V5, multiclass
D24V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(10Q22.2) MUTATED     18   37
  AMP PEAK 24(10Q22.2) WILD-TYPE   55   84
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           37                             84
  CLUS_2                           18                             55
D24V7, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           44                             98
  CLUS_2                           27                             80
  CLUS_3                           25                             88
D24V8, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           18                             47
  CLUS_2                           18                             74
  CLUS_3                           11                             54
  CLUS_4                           49                             91
D24V9, multiclass
        clus
vv       AMP PEAK 24(10Q22.2) MUTATED AMP PEAK 24(10Q22.2) WILD-TYPE
  CLUS_1                           55                            139
  CLUS_2                           39                            107
  CLUS_3                           36                            103
D24V10, multiclass

Clustering(25) Variable = Amp Peak 25(11p11.2) mutation analysis
D25V1, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            6                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D25V2, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            6                             12
D25V3, multiclass
D25V4, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           21                            122
  CLUS_2                           12                             73
  CLUS_3                            3                            146
D25V5, multiclass
D25V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(11P11.2) MUTATED      5   10
  AMP PEAK 25(11P11.2) WILD-TYPE   68  111
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                            5                             68
D25V7, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           23                            119
  CLUS_2                            4                            103
  CLUS_3                            2                            111
D25V8, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            3                             89
  CLUS_3                            2                             63
  CLUS_4                           23                            117
D25V9, multiclass
        clus
vv       AMP PEAK 25(11P11.2) MUTATED AMP PEAK 25(11P11.2) WILD-TYPE
  CLUS_1                           33                            161
  CLUS_2                            6                            140
  CLUS_3                            5                            134
D25V10, multiclass

Clustering(26) Variable = Amp Peak 26(11q13.2) mutation analysis
D26V1, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            8                             10
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D26V2, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            7                             11
D26V3, multiclass
D26V4, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           32                            111
  CLUS_2                           13                             72
  CLUS_3                            9                            140
D26V5, multiclass
D26V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(11Q13.2) MUTATED      9   15
  AMP PEAK 26(11Q13.2) WILD-TYPE   64  106
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                            9                             64
D26V7, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           32                            110
  CLUS_2                            7                            100
  CLUS_3                            5                            108
D26V8, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            6                             86
  CLUS_3                            2                             63
  CLUS_4                           35                            105
D26V9, multiclass
        clus
vv       AMP PEAK 26(11Q13.2) MUTATED AMP PEAK 26(11Q13.2) WILD-TYPE
  CLUS_1                           43                            151
  CLUS_2                           13                            133
  CLUS_3                            8                            131
D26V10, multiclass

Clustering(27) Variable = Amp Peak 27(12p12.1) mutation analysis
D27V1, multiclass
        clus
vv       AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            3                             15
  CLUS_3                            3                             11
  CLUS_4                            0                              8
D27V2, multiclass
        clus
vv       AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            1                             14
  CLUS_3                            4                             14
D27V3, multiclass
D27V4, multiclass
        clus
vv       AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE
  CLUS_1                           44                             99
  CLUS_2                           13                             72
  CLUS_3                            9                            140
D27V5, multiclass
D27V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 27(12P12.1) MUTATED     10   14
  AMP PEAK 27(12P12.1) WILD-TYPE   63  107
        clus
vv       AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE
  CLUS_1                           14                            107
  CLUS_2                           10                             63
D27V7, multiclass
        clus
vv       AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE
  CLUS_1                           33                            109
  CLUS_2                            9                             98
  CLUS_3                            6                            107
D27V8, multiclass
        clus
vv       AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            8                             84
  CLUS_3                            6                             59
  CLUS_4                           33                            107
D27V9, multiclass
        clus
vv       AMP PEAK 27(12P12.1) MUTATED AMP PEAK 27(12P12.1) WILD-TYPE
  CLUS_1                           56                            138
  CLUS_2                           12                            134
  CLUS_3                           13                            126
D27V10, multiclass

Clustering(28) Variable = Amp Peak 28(12q13.11) mutation analysis
D28V1, multiclass
        clus
vv       AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE
  CLUS_1                             1                              12
  CLUS_2                             5                              13
  CLUS_3                             3                              11
  CLUS_4                             0                               8
D28V2, multiclass
        clus
vv       AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                             2                              13
  CLUS_3                             5                              13
D28V3, multiclass
D28V4, multiclass
        clus
vv       AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE
  CLUS_1                            42                             101
  CLUS_2                            15                              70
  CLUS_3                             7                             142
D28V5, multiclass
D28V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 28(12Q13.11) MUTATED     11   10
  AMP PEAK 28(12Q13.11) WILD-TYPE   62  111
        clus
vv       AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE
  CLUS_1                            10                             111
  CLUS_2                            11                              62
D28V7, multiclass
        clus
vv       AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE
  CLUS_1                            34                             108
  CLUS_2                             7                             100
  CLUS_3                             5                             108
D28V8, multiclass
        clus
vv       AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE
  CLUS_1                             1                              64
  CLUS_2                             6                              86
  CLUS_3                             5                              60
  CLUS_4                            34                             106
D28V9, multiclass
        clus
vv       AMP PEAK 28(12Q13.11) MUTATED AMP PEAK 28(12Q13.11) WILD-TYPE
  CLUS_1                            57                             137
  CLUS_2                            11                             135
  CLUS_3                            11                             128
D28V10, multiclass

Clustering(29) Variable = Amp Peak 29(12q13.2) mutation analysis
D29V1, multiclass
        clus
vv       AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            6                             12
  CLUS_3                            4                             10
  CLUS_4                            0                              8
D29V2, multiclass
        clus
vv       AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            2                             13
  CLUS_3                            6                             12
D29V3, multiclass
D29V4, multiclass
        clus
vv       AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE
  CLUS_1                           46                             97
  CLUS_2                           13                             72
  CLUS_3                           11                            138
D29V5, multiclass
D29V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 29(12Q13.2) MUTATED     11   12
  AMP PEAK 29(12Q13.2) WILD-TYPE   62  109
        clus
vv       AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE
  CLUS_1                           12                            109
  CLUS_2                           11                             62
D29V7, multiclass
        clus
vv       AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE
  CLUS_1                           40                            102
  CLUS_2                            7                            100
  CLUS_3                            5                            108
D29V8, multiclass
        clus
vv       AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            6                             86
  CLUS_3                            6                             59
  CLUS_4                           39                            101
D29V9, multiclass
        clus
vv       AMP PEAK 29(12Q13.2) MUTATED AMP PEAK 29(12Q13.2) WILD-TYPE
  CLUS_1                           59                            135
  CLUS_2                           15                            131
  CLUS_3                           11                            128
D29V10, multiclass

Clustering(30) Variable = Amp Peak 30(13q34) mutation analysis
D30V1, multiclass
        clus
vv       AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE
  CLUS_1                          0                           13
  CLUS_2                          3                           15
  CLUS_3                          0                           14
  CLUS_4                          0                            8
D30V2, multiclass
        clus
vv       AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          1                           14
  CLUS_3                          2                           16
D30V3, multiclass
D30V4, multiclass
        clus
vv       AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE
  CLUS_1                         30                          113
  CLUS_2                         10                           75
  CLUS_3                          4                          145
D30V5, multiclass
D30V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 30(13Q34) MUTATED      6    2
  AMP PEAK 30(13Q34) WILD-TYPE   67  119
        clus
vv       AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE
  CLUS_1                          2                          119
  CLUS_2                          6                           67
D30V7, multiclass
        clus
vv       AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE
  CLUS_1                         31                          111
  CLUS_2                          2                          105
  CLUS_3                          0                          113
D30V8, multiclass
        clus
vv       AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE
  CLUS_1                          0                           65
  CLUS_2                          2                           90
  CLUS_3                          3                           62
  CLUS_4                         28                          112
D30V9, multiclass
        clus
vv       AMP PEAK 30(13Q34) MUTATED AMP PEAK 30(13Q34) WILD-TYPE
  CLUS_1                         40                          154
  CLUS_2                          4                          142
  CLUS_3                          5                          134
D30V10, multiclass

Clustering(31) Variable = Amp Peak 31(14q24.3) mutation analysis
D31V1, multiclass
        clus
vv       AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            6                             12
  CLUS_3                            1                             13
  CLUS_4                            0                              8
D31V2, multiclass
        clus
vv       AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            1                             14
  CLUS_3                            6                             12
D31V3, multiclass
D31V4, multiclass
        clus
vv       AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE
  CLUS_1                           31                            112
  CLUS_2                            9                             76
  CLUS_3                            6                            143
D31V5, multiclass
D31V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 31(14Q24.3) MUTATED      7    7
  AMP PEAK 31(14Q24.3) WILD-TYPE   66  114
        clus
vv       AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            7                             66
D31V7, multiclass
        clus
vv       AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE
  CLUS_1                           29                            113
  CLUS_2                            5                            102
  CLUS_3                            1                            112
D31V8, multiclass
        clus
vv       AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE
  CLUS_1                            0                             65
  CLUS_2                            3                             89
  CLUS_3                            0                             65
  CLUS_4                           32                            108
D31V9, multiclass
        clus
vv       AMP PEAK 31(14Q24.3) MUTATED AMP PEAK 31(14Q24.3) WILD-TYPE
  CLUS_1                           42                            152
  CLUS_2                            7                            139
  CLUS_3                            4                            135
D31V10, multiclass

Clustering(32) Variable = Amp Peak 32(14q32.33) mutation analysis
D32V1, multiclass
        clus
vv       AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                             1                              12
  CLUS_2                             4                              14
  CLUS_3                             2                              12
  CLUS_4                             0                               8
D32V2, multiclass
        clus
vv       AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                             1                              14
  CLUS_3                             4                              14
D32V3, multiclass
D32V4, multiclass
        clus
vv       AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            37                             106
  CLUS_2                            14                              71
  CLUS_3                             7                             142
D32V5, multiclass
D32V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 32(14Q32.33) MUTATED      5   10
  AMP PEAK 32(14Q32.33) WILD-TYPE   68  111
        clus
vv       AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            10                             111
  CLUS_2                             5                              68
D32V7, multiclass
        clus
vv       AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            28                             114
  CLUS_2                             6                             101
  CLUS_3                             4                             109
D32V8, multiclass
        clus
vv       AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                             1                              64
  CLUS_2                             3                              89
  CLUS_3                             2                              63
  CLUS_4                            32                             108
D32V9, multiclass
        clus
vv       AMP PEAK 32(14Q32.33) MUTATED AMP PEAK 32(14Q32.33) WILD-TYPE
  CLUS_1                            48                             146
  CLUS_2                            13                             133
  CLUS_3                             7                             132
D32V10, multiclass

Clustering(33) Variable = Amp Peak 33(16p11.2) mutation analysis
D33V1, multiclass
        clus
vv       AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            5                             13
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D33V2, multiclass
        clus
vv       AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            5                             13
D33V3, multiclass
D33V4, multiclass
        clus
vv       AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE
  CLUS_1                           30                            113
  CLUS_2                           10                             75
  CLUS_3                            6                            143
D33V5, multiclass
D33V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 33(16P11.2) MUTATED     10    8
  AMP PEAK 33(16P11.2) WILD-TYPE   63  113
        clus
vv       AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE
  CLUS_1                            8                            113
  CLUS_2                           10                             63
D33V7, multiclass
        clus
vv       AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE
  CLUS_1                           32                            110
  CLUS_2                            1                            106
  CLUS_3                            4                            109
D33V8, multiclass
        clus
vv       AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                            0                             92
  CLUS_3                            2                             63
  CLUS_4                           32                            108
D33V9, multiclass
        clus
vv       AMP PEAK 33(16P11.2) MUTATED AMP PEAK 33(16P11.2) WILD-TYPE
  CLUS_1                           42                            152
  CLUS_2                            3                            143
  CLUS_3                            7                            132
D33V10, multiclass

Clustering(34) Variable = Amp Peak 34(17q11.2) mutation analysis
D34V1, multiclass
        clus
vv       AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            5                             13
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D34V2, multiclass
        clus
vv       AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            4                             14
D34V3, multiclass
D34V4, multiclass
        clus
vv       AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE
  CLUS_1                           42                            101
  CLUS_2                            9                             76
  CLUS_3                            3                            146
D34V5, multiclass
D34V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 34(17Q11.2) MUTATED     10    3
  AMP PEAK 34(17Q11.2) WILD-TYPE   63  118
        clus
vv       AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE
  CLUS_1                            3                            118
  CLUS_2                           10                             63
D34V7, multiclass
        clus
vv       AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE
  CLUS_1                           31                            111
  CLUS_2                            2                            105
  CLUS_3                            1                            112
D34V8, multiclass
        clus
vv       AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE
  CLUS_1                            0                             65
  CLUS_2                            0                             92
  CLUS_3                            4                             61
  CLUS_4                           30                            110
D34V9, multiclass
        clus
vv       AMP PEAK 34(17Q11.2) MUTATED AMP PEAK 34(17Q11.2) WILD-TYPE
  CLUS_1                           52                            142
  CLUS_2                            2                            144
  CLUS_3                            6                            133
D34V10, multiclass

Clustering(35) Variable = Amp Peak 35(17q12) mutation analysis
D35V1, multiclass
        clus
vv       AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE
  CLUS_1                          0                           13
  CLUS_2                          4                           14
  CLUS_3                          1                           13
  CLUS_4                          0                            8
D35V2, multiclass
        clus
vv       AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE
  CLUS_1                          1                           19
  CLUS_2                          0                           15
  CLUS_3                          4                           14
D35V3, multiclass
D35V4, multiclass
        clus
vv       AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE
  CLUS_1                         42                          101
  CLUS_2                          8                           77
  CLUS_3                          2                          147
D35V5, multiclass
D35V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 35(17Q12) MUTATED      8    9
  AMP PEAK 35(17Q12) WILD-TYPE   65  112
        clus
vv       AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE
  CLUS_1                          9                          112
  CLUS_2                          8                           65
D35V7, multiclass
        clus
vv       AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE
  CLUS_1                         37                          105
  CLUS_2                          2                          105
  CLUS_3                          1                          112
D35V8, multiclass
        clus
vv       AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE
  CLUS_1                          0                           65
  CLUS_2                          1                           91
  CLUS_3                          5                           60
  CLUS_4                         34                          106
D35V9, multiclass
        clus
vv       AMP PEAK 35(17Q12) MUTATED AMP PEAK 35(17Q12) WILD-TYPE
  CLUS_1                         52                          142
  CLUS_2                          2                          144
  CLUS_3                          8                          131
D35V10, multiclass

Clustering(36) Variable = Amp Peak 36(17q25.1) mutation analysis
D36V1, multiclass
        clus
vv       AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            9                              9
  CLUS_3                            1                             13
  CLUS_4                            0                              8
D36V2, multiclass
        clus
vv       AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            0                             15
  CLUS_3                            9                              9
D36V3, multiclass
D36V4, multiclass
        clus
vv       AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE
  CLUS_1                           48                             95
  CLUS_2                           16                             69
  CLUS_3                            5                            144
D36V5, multiclass
D36V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 36(17Q25.1) MUTATED     13   13
  AMP PEAK 36(17Q25.1) WILD-TYPE   60  108
        clus
vv       AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           13                             60
D36V7, multiclass
        clus
vv       AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE
  CLUS_1                           44                             98
  CLUS_2                            3                            104
  CLUS_3                            5                            108
D36V8, multiclass
        clus
vv       AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            1                             91
  CLUS_3                            6                             59
  CLUS_4                           44                             96
D36V9, multiclass
        clus
vv       AMP PEAK 36(17Q25.1) MUTATED AMP PEAK 36(17Q25.1) WILD-TYPE
  CLUS_1                           66                            128
  CLUS_2                            9                            137
  CLUS_3                           11                            128
D36V10, multiclass

Clustering(37) Variable = Amp Peak 37(18p11.31) mutation analysis
D37V1, multiclass
        clus
vv       AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                             0                              13
  CLUS_2                             6                              12
  CLUS_3                             1                              13
  CLUS_4                             0                               8
D37V2, multiclass
        clus
vv       AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                             1                              19
  CLUS_2                             1                              14
  CLUS_3                             5                              13
D37V3, multiclass
D37V4, multiclass
        clus
vv       AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            49                              94
  CLUS_2                            15                              70
  CLUS_3                             5                             144
D37V5, multiclass
D37V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 37(18P11.31) MUTATED     11    6
  AMP PEAK 37(18P11.31) WILD-TYPE   62  115
        clus
vv       AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                             6                             115
  CLUS_2                            11                              62
D37V7, multiclass
        clus
vv       AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            41                             101
  CLUS_2                             4                             103
  CLUS_3                             3                             110
D37V8, multiclass
        clus
vv       AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                             1                              64
  CLUS_2                             3                              89
  CLUS_3                             1                              64
  CLUS_4                            43                              97
D37V9, multiclass
        clus
vv       AMP PEAK 37(18P11.31) MUTATED AMP PEAK 37(18P11.31) WILD-TYPE
  CLUS_1                            67                             127
  CLUS_2                             7                             139
  CLUS_3                             5                             134
D37V10, multiclass

Clustering(38) Variable = Amp Peak 38(18q11.2) mutation analysis
D38V1, multiclass
        clus
vv       AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            4                             14
  CLUS_3                            1                             13
  CLUS_4                            0                              8
D38V2, multiclass
        clus
vv       AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            0                             15
  CLUS_3                            4                             14
D38V3, multiclass
D38V4, multiclass
        clus
vv       AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE
  CLUS_1                           36                            107
  CLUS_2                           15                             70
  CLUS_3                            2                            147
D38V5, multiclass
D38V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 38(18Q11.2) MUTATED      9    5
  AMP PEAK 38(18Q11.2) WILD-TYPE   64  116
        clus
vv       AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE
  CLUS_1                            5                            116
  CLUS_2                            9                             64
D38V7, multiclass
        clus
vv       AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE
  CLUS_1                           28                            114
  CLUS_2                            2                            105
  CLUS_3                            3                            110
D38V8, multiclass
        clus
vv       AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            2                             90
  CLUS_3                            1                             64
  CLUS_4                           29                            111
D38V9, multiclass
        clus
vv       AMP PEAK 38(18Q11.2) MUTATED AMP PEAK 38(18Q11.2) WILD-TYPE
  CLUS_1                           51                            143
  CLUS_2                            3                            143
  CLUS_3                            6                            133
D38V10, multiclass

Clustering(39) Variable = Amp Peak 39(19p13.2) mutation analysis
D39V1, multiclass
        clus
vv       AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            9                              9
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D39V2, multiclass
        clus
vv       AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            9                              9
D39V3, multiclass
D39V4, multiclass
        clus
vv       AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           46                             97
  CLUS_2                           19                             66
  CLUS_3                            7                            142
D39V5, multiclass
D39V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 39(19P13.2) MUTATED     11    7
  AMP PEAK 39(19P13.2) WILD-TYPE   62  114
        clus
vv       AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                           11                             62
D39V7, multiclass
        clus
vv       AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           49                             93
  CLUS_2                            1                            106
  CLUS_3                            2                            111
D39V8, multiclass
        clus
vv       AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            2                             63
  CLUS_4                           49                             91
D39V9, multiclass
        clus
vv       AMP PEAK 39(19P13.2) MUTATED AMP PEAK 39(19P13.2) WILD-TYPE
  CLUS_1                           68                            126
  CLUS_2                            8                            138
  CLUS_3                            5                            134
D39V10, multiclass

Clustering(40) Variable = Amp Peak 40(19p13.11) mutation analysis
D40V1, multiclass
        clus
vv       AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE
  CLUS_1                             0                              13
  CLUS_2                             8                              10
  CLUS_3                             0                              14
  CLUS_4                             0                               8
D40V2, multiclass
        clus
vv       AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE
  CLUS_1                             0                              20
  CLUS_2                             1                              14
  CLUS_3                             7                              11
D40V3, multiclass
D40V4, multiclass
        clus
vv       AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE
  CLUS_1                            49                              94
  CLUS_2                            16                              69
  CLUS_3                             5                             144
D40V5, multiclass
D40V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 40(19P13.11) MUTATED      9    9
  AMP PEAK 40(19P13.11) WILD-TYPE   64  112
        clus
vv       AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE
  CLUS_1                             9                             112
  CLUS_2                             9                              64
D40V7, multiclass
        clus
vv       AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE
  CLUS_1                            47                              95
  CLUS_2                             1                             106
  CLUS_3                             3                             110
D40V8, multiclass
        clus
vv       AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE
  CLUS_1                             1                              64
  CLUS_2                             0                              92
  CLUS_3                             2                              63
  CLUS_4                            48                              92
D40V9, multiclass
        clus
vv       AMP PEAK 40(19P13.11) MUTATED AMP PEAK 40(19P13.11) WILD-TYPE
  CLUS_1                            68                             126
  CLUS_2                             7                             139
  CLUS_3                             6                             133
D40V10, multiclass

Clustering(41) Variable = Amp Peak 41(19q12) mutation analysis
D41V1, multiclass
        clus
vv       AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE
  CLUS_1                          0                           13
  CLUS_2                          9                            9
  CLUS_3                          1                           13
  CLUS_4                          0                            8
D41V2, multiclass
        clus
vv       AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE
  CLUS_1                          1                           19
  CLUS_2                          1                           14
  CLUS_3                          8                           10
D41V3, multiclass
D41V4, multiclass
        clus
vv       AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE
  CLUS_1                         62                           81
  CLUS_2                         19                           66
  CLUS_3                          5                          144
D41V5, multiclass
D41V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 41(19Q12) MUTATED     10    9
  AMP PEAK 41(19Q12) WILD-TYPE   63  112
        clus
vv       AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE
  CLUS_1                          9                          112
  CLUS_2                         10                           63
D41V7, multiclass
        clus
vv       AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE
  CLUS_1                         56                           86
  CLUS_2                          2                          105
  CLUS_3                          2                          111
D41V8, multiclass
        clus
vv       AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE
  CLUS_1                          1                           64
  CLUS_2                          0                           92
  CLUS_3                          4                           61
  CLUS_4                         55                           85
D41V9, multiclass
        clus
vv       AMP PEAK 41(19Q12) MUTATED AMP PEAK 41(19Q12) WILD-TYPE
  CLUS_1                         84                          110
  CLUS_2                          7                          139
  CLUS_3                          6                          133
D41V10, multiclass

Clustering(42) Variable = Amp Peak 42(20p13) mutation analysis
D42V1, multiclass
        clus
vv       AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE
  CLUS_1                          0                           13
  CLUS_2                          5                           13
  CLUS_3                          0                           14
  CLUS_4                          0                            8
D42V2, multiclass
        clus
vv       AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          1                           14
  CLUS_3                          4                           14
D42V3, multiclass
D42V4, multiclass
        clus
vv       AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE
  CLUS_1                         59                           84
  CLUS_2                         17                           68
  CLUS_3                         15                          134
D42V5, multiclass
D42V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 42(20P13) MUTATED     12   14
  AMP PEAK 42(20P13) WILD-TYPE   61  107
        clus
vv       AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE
  CLUS_1                         14                          107
  CLUS_2                         12                           61
D42V7, multiclass
        clus
vv       AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE
  CLUS_1                         52                           90
  CLUS_2                          7                          100
  CLUS_3                          9                          104
D42V8, multiclass
        clus
vv       AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE
  CLUS_1                          6                           59
  CLUS_2                          5                           87
  CLUS_3                          5                           60
  CLUS_4                         52                           88
D42V9, multiclass
        clus
vv       AMP PEAK 42(20P13) MUTATED AMP PEAK 42(20P13) WILD-TYPE
  CLUS_1                         73                          121
  CLUS_2                         15                          131
  CLUS_3                         15                          124
D42V10, multiclass

Clustering(43) Variable = Amp Peak 43(20q11.21) mutation analysis
D43V1, multiclass
        clus
vv       AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE
  CLUS_1                             1                              12
  CLUS_2                             9                               9
  CLUS_3                             0                              14
  CLUS_4                             0                               8
D43V2, multiclass
        clus
vv       AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE
  CLUS_1                             0                              20
  CLUS_2                             2                              13
  CLUS_3                             8                              10
D43V3, multiclass
D43V4, multiclass
        clus
vv       AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE
  CLUS_1                            72                              71
  CLUS_2                            20                              65
  CLUS_3                            19                             130
D43V5, multiclass
D43V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 43(20Q11.21) MUTATED     14   14
  AMP PEAK 43(20Q11.21) WILD-TYPE   59  107
        clus
vv       AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE
  CLUS_1                            14                             107
  CLUS_2                            14                              59
D43V7, multiclass
        clus
vv       AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE
  CLUS_1                            62                              80
  CLUS_2                             8                              99
  CLUS_3                             7                             106
D43V8, multiclass
        clus
vv       AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE
  CLUS_1                             5                              60
  CLUS_2                             5                              87
  CLUS_3                             6                              59
  CLUS_4                            61                              79
D43V9, multiclass
        clus
vv       AMP PEAK 43(20Q11.21) MUTATED AMP PEAK 43(20Q11.21) WILD-TYPE
  CLUS_1                            93                             101
  CLUS_2                            19                             127
  CLUS_3                            15                             124
D43V10, multiclass

Clustering(44) Variable = Amp Peak 44(20q13.12) mutation analysis
D44V1, multiclass
        clus
vv       AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                             1                              12
  CLUS_2                             6                              12
  CLUS_3                             0                              14
  CLUS_4                             0                               8
D44V2, multiclass
        clus
vv       AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                             0                              20
  CLUS_2                             1                              14
  CLUS_3                             6                              12
D44V3, multiclass
D44V4, multiclass
        clus
vv       AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            79                              64
  CLUS_2                            20                              65
  CLUS_3                            22                             127
D44V5, multiclass
D44V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 44(20Q13.12) MUTATED     16   15
  AMP PEAK 44(20Q13.12) WILD-TYPE   57  106
        clus
vv       AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            15                             106
  CLUS_2                            16                              57
D44V7, multiclass
        clus
vv       AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            64                              78
  CLUS_2                             9                              98
  CLUS_3                             9                             104
D44V8, multiclass
        clus
vv       AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                             5                              60
  CLUS_2                             6                              86
  CLUS_3                             7                              58
  CLUS_4                            64                              76
D44V9, multiclass
        clus
vv       AMP PEAK 44(20Q13.12) MUTATED AMP PEAK 44(20Q13.12) WILD-TYPE
  CLUS_1                            97                              97
  CLUS_2                            21                             125
  CLUS_3                            17                             122
D44V10, multiclass

Clustering(45) Variable = Amp Peak 45(20q13.33) mutation analysis
D45V1, multiclass
        clus
vv       AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE
  CLUS_1                             1                              12
  CLUS_2                             7                              11
  CLUS_3                             0                              14
  CLUS_4                             0                               8
D45V2, multiclass
        clus
vv       AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE
  CLUS_1                             0                              20
  CLUS_2                             2                              13
  CLUS_3                             6                              12
D45V3, multiclass
D45V4, multiclass
        clus
vv       AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE
  CLUS_1                            73                              70
  CLUS_2                            21                              64
  CLUS_3                            23                             126
D45V5, multiclass
D45V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 45(20Q13.33) MUTATED     13   18
  AMP PEAK 45(20Q13.33) WILD-TYPE   60  103
        clus
vv       AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE
  CLUS_1                            18                             103
  CLUS_2                            13                              60
D45V7, multiclass
        clus
vv       AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE
  CLUS_1                            61                              81
  CLUS_2                             9                              98
  CLUS_3                            11                             102
D45V8, multiclass
        clus
vv       AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE
  CLUS_1                             5                              60
  CLUS_2                             6                              86
  CLUS_3                             8                              57
  CLUS_4                            62                              78
D45V9, multiclass
        clus
vv       AMP PEAK 45(20Q13.33) MUTATED AMP PEAK 45(20Q13.33) WILD-TYPE
  CLUS_1                            94                             100
  CLUS_2                            22                             124
  CLUS_3                            16                             123
D45V10, multiclass

Clustering(46) Variable = Amp Peak 46(22q12.2) mutation analysis
D46V1, multiclass
        clus
vv       AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            4                             14
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D46V2, multiclass
        clus
vv       AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            3                             15
D46V3, multiclass
D46V4, multiclass
        clus
vv       AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE
  CLUS_1                           40                            103
  CLUS_2                            8                             77
  CLUS_3                            0                            149
D46V5, multiclass
D46V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 46(22Q12.2) MUTATED      6    2
  AMP PEAK 46(22Q12.2) WILD-TYPE   67  119
        clus
vv       AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE
  CLUS_1                            2                            119
  CLUS_2                            6                             67
D46V7, multiclass
        clus
vv       AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE
  CLUS_1                           32                            110
  CLUS_2                            0                            107
  CLUS_3                            1                            112
D46V8, multiclass
        clus
vv       AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            1                             64
  CLUS_4                           31                            109
D46V9, multiclass
        clus
vv       AMP PEAK 46(22Q12.2) MUTATED AMP PEAK 46(22Q12.2) WILD-TYPE
  CLUS_1                           50                            144
  CLUS_2                            0                            146
  CLUS_3                            3                            136
D46V10, multiclass

Clustering(47) Variable = Amp Peak 47(Xp11.23) mutation analysis
D47V1, multiclass
        clus
vv       AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            4                             14
  CLUS_3                            2                             12
  CLUS_4                            0                              8
D47V2, multiclass
        clus
vv       AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            1                             14
  CLUS_3                            4                             14
D47V3, multiclass
D47V4, multiclass
        clus
vv       AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE
  CLUS_1                           33                            110
  CLUS_2                           16                             69
  CLUS_3                           15                            134
D47V5, multiclass
D47V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 47(XP11.23) MUTATED      8   20
  AMP PEAK 47(XP11.23) WILD-TYPE   65  101
        clus
vv       AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE
  CLUS_1                           20                            101
  CLUS_2                            8                             65
D47V7, multiclass
        clus
vv       AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE
  CLUS_1                           28                            114
  CLUS_2                           14                             93
  CLUS_3                           13                            100
D47V8, multiclass
        clus
vv       AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE
  CLUS_1                            6                             59
  CLUS_2                           11                             81
  CLUS_3                            9                             56
  CLUS_4                           29                            111
D47V9, multiclass
        clus
vv       AMP PEAK 47(XP11.23) MUTATED AMP PEAK 47(XP11.23) WILD-TYPE
  CLUS_1                           47                            147
  CLUS_2                           16                            130
  CLUS_3                           18                            121
D47V10, multiclass

Clustering(48) Variable = Amp Peak 48(Xq28) mutation analysis
D48V1, multiclass
        clus
vv       AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE
  CLUS_1                         1                          12
  CLUS_2                         7                          11
  CLUS_3                         2                          12
  CLUS_4                         0                           8
D48V2, multiclass
        clus
vv       AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE
  CLUS_1                         2                          18
  CLUS_2                         2                          13
  CLUS_3                         6                          12
D48V3, multiclass
D48V4, multiclass
        clus
vv       AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE
  CLUS_1                        30                         113
  CLUS_2                        16                          69
  CLUS_3                        15                         134
D48V5, multiclass
D48V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 48(XQ28) MUTATED     12   16
  AMP PEAK 48(XQ28) WILD-TYPE   61  105
        clus
vv       AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE
  CLUS_1                        16                         105
  CLUS_2                        12                          61
D48V7, multiclass
        clus
vv       AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE
  CLUS_1                        29                         113
  CLUS_2                        14                          93
  CLUS_3                        13                         100
D48V8, multiclass
        clus
vv       AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE
  CLUS_1                         7                          58
  CLUS_2                        11                          81
  CLUS_3                         9                          56
  CLUS_4                        29                         111
D48V9, multiclass
        clus
vv       AMP PEAK 48(XQ28) MUTATED AMP PEAK 48(XQ28) WILD-TYPE
  CLUS_1                        45                         149
  CLUS_2                        16                         130
  CLUS_3                        19                         120
D48V10, multiclass

Clustering(49) Variable = Del Peak  1(1p36.21) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            7                             11
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D49V2, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            2                             13
  CLUS_3                            6                             12
D49V3, multiclass
D49V4, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           34                            109
  CLUS_2                           15                             70
  CLUS_3                            5                            144
D49V5, multiclass
D49V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.21) MUTATED      8    7
  DEL PEAK  1(1P36.21) WILD-TYPE   65  114
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            8                             65
D49V7, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           35                            107
  CLUS_2                            0                            107
  CLUS_3                            5                            108
D49V8, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                            0                             92
  CLUS_3                            6                             59
  CLUS_4                           32                            108
D49V9, multiclass
        clus
vv       DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE
  CLUS_1                           46                            148
  CLUS_2                            7                            139
  CLUS_3                            8                            131
D49V10, multiclass

Clustering(50) Variable = Del Peak  2(1p36.11) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            5                             13
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D50V2, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            5                             13
D50V3, multiclass
D50V4, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           48                             95
  CLUS_2                           15                             70
  CLUS_3                            6                            143
D50V5, multiclass
D50V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  2(1P36.11) MUTATED      7    7
  DEL PEAK  2(1P36.11) WILD-TYPE   66  114
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            7                             66
D50V7, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           37                            105
  CLUS_2                            0                            107
  CLUS_3                            5                            108
D50V8, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            5                             60
  CLUS_4                           36                            104
D50V9, multiclass
        clus
vv       DEL PEAK  2(1P36.11) MUTATED DEL PEAK  2(1P36.11) WILD-TYPE
  CLUS_1                           61                            133
  CLUS_2                            7                            139
  CLUS_3                            6                            133
D50V10, multiclass

Clustering(51) Variable = Del Peak  3(1q43) mutation analysis
D51V1, multiclass
D51V2, multiclass
D51V3, multiclass
D51V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         5                         138
  CLUS_2                         3                          82
  CLUS_3                         1                         148
D51V5, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  3(1Q43) MUTATED"
clus
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          1                         193 
                 TCGA-A5-A0G1                  TCGA-A5-A0G2 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0G5                  TCGA-A5-A0G9 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0GA                  TCGA-A5-A0GB 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0GD                  TCGA-A5-A0GE 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0GG                  TCGA-A5-A0GH 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0GI                  TCGA-A5-A0GJ 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0GM                  TCGA-A5-A0GN 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0GQ                  TCGA-A5-A0GR 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0GU                  TCGA-A5-A0GV 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0GW                  TCGA-A5-A0GX 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0R6                  TCGA-A5-A0R7 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0R8                  TCGA-A5-A0R9 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0RA                  TCGA-A5-A0VP 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-A5-A0VQ                  TCGA-AP-A051 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A052                  TCGA-AP-A053 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A054                  TCGA-AP-A056 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A059                  TCGA-AP-A05A 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A05D                  TCGA-AP-A05H 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A05J                  TCGA-AP-A05N 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A05O                  TCGA-AP-A05P 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A0LD                  TCGA-AP-A0LE 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A0LF                  TCGA-AP-A0LG 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A0LH                  TCGA-AP-A0LI 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A0LJ                  TCGA-AP-A0LL 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A0LM                  TCGA-AP-A0LN 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A0LP                  TCGA-AP-A0LT 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AP-A0LV                  TCGA-AX-A05S 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A05T                  TCGA-AX-A05U 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A05W                  TCGA-AX-A05Y 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A05Z                  TCGA-AX-A060 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A062                  TCGA-AX-A063 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A064                  TCGA-AX-A06B 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A06D                  TCGA-AX-A06F 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A06J                  TCGA-AX-A06L 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A0IS                  TCGA-AX-A0IW 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A0IZ                  TCGA-AX-A0J0 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-AX-A0J1                  TCGA-B5-A0JN 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A0JT                  TCGA-B5-A0JY 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A0JZ                  TCGA-B5-A0K0 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A0K1                  TCGA-B5-A0K2 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A0K3                  TCGA-B5-A0K4 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A0K7                  TCGA-B5-A0K9 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A11E                  TCGA-B5-A11F 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A11G                  TCGA-B5-A11H 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A11I                  TCGA-B5-A11N 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A11Q                  TCGA-B5-A11S 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A11U                  TCGA-B5-A11V 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A11W                  TCGA-B5-A11Y 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-B5-A11Z                  TCGA-B5-A121 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0LW                  TCGA-BG-A0LX 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0M0                  TCGA-BG-A0M2 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0M3                  TCGA-BG-A0M4 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0M6                  TCGA-BG-A0M7 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0M8                  TCGA-BG-A0M9 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0MC                  TCGA-BG-A0MG 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0MS                  TCGA-BG-A0MT 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0MU                  TCGA-BG-A0RY 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0VT                  TCGA-BG-A0VV 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0W1                  TCGA-BG-A0YU 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A0YV                  TCGA-BG-A186 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A187                  TCGA-BG-A18A 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BG-A18B                  TCGA-BK-A0C9 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BK-A0CA                  TCGA-BK-A0CB 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BK-A0CC                  TCGA-BK-A139 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BK-A13C                  TCGA-BS-A0T9 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BS-A0TA                  TCGA-BS-A0TC 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BS-A0TD                  TCGA-BS-A0TG 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BS-A0TI                  TCGA-BS-A0TJ 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BS-A0U7                  TCGA-BS-A0U8 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BS-A0U9                  TCGA-BS-A0UF 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-BS-A0UJ                  TCGA-BS-A0V7 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A0ZP                  TCGA-D1-A0ZR 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A0ZU                  TCGA-D1-A0ZZ 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A101                  TCGA-D1-A102 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A103                  TCGA-D1-A15V 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A15W                  TCGA-D1-A15X 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A15Z                  TCGA-D1-A160 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A161                  TCGA-D1-A163 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A165                  TCGA-D1-A167 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A168                  TCGA-D1-A169 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A16B                  TCGA-D1-A16D 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A16E                  TCGA-D1-A16G 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A16I                  TCGA-D1-A16J 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A16N                  TCGA-D1-A16O 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A16Q                  TCGA-D1-A16R 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A16S                  TCGA-D1-A16V 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A16X                  TCGA-D1-A16Y 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A175                  TCGA-D1-A176 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A177                  TCGA-D1-A179 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A17B                  TCGA-D1-A17C 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A17D                  TCGA-D1-A17F 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A17H                  TCGA-D1-A17K 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A17L                  TCGA-D1-A17M 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A17N                  TCGA-D1-A17Q 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A17R                  TCGA-D1-A17S 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-D1-A17T                  TCGA-D1-A17U 
"DEL PEAK  3(1Q43) WILD-TYPE" "DEL PEAK  3(1Q43) WILD-TYPE" 
                 TCGA-DI-A0WH 
"DEL PEAK  3(1Q43) WILD-TYPE" 
D51V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q43) MUTATED      1    0
  DEL PEAK  3(1Q43) WILD-TYPE   72  121
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         0                         121
  CLUS_2                         1                          72
D51V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         6                         136
  CLUS_2                         0                         107
  CLUS_3                         0                         113
D51V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         0                          65
  CLUS_2                         0                          92
  CLUS_3                         0                          65
  CLUS_4                         6                         134
D51V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         7                         187
  CLUS_2                         1                         145
  CLUS_3                         1                         138
D51V10, multiclass

Clustering(52) Variable = Del Peak  4(2p25.3) mutation analysis
D52V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  4(2P25.3) MUTATED"
clus
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
D52V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  4(2P25.3) MUTATED"
clus
  DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05A                    TCGA-AP-A05D 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05H                    TCGA-AP-A05J 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A05N                    TCGA-AP-A05P 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0L8                    TCGA-AP-A0LD 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  4(2P25.3) WILD-TYPE" "DEL PEAK  4(2P25.3) WILD-TYPE" 
D52V3, multiclass
D52V4, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          17                           126
  CLUS_2                           4                            81
  CLUS_3                           2                           147
D52V5, multiclass
D52V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2P25.3) MUTATED      1    4
  DEL PEAK  4(2P25.3) WILD-TYPE   72  117
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                           1                            72
D52V7, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          13                           129
  CLUS_2                           0                           107
  CLUS_3                           1                           112
D52V8, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                           1                            64
  CLUS_2                           0                            92
  CLUS_3                           0                            65
  CLUS_4                          13                           127
D52V9, multiclass
        clus
vv       DEL PEAK  4(2P25.3) MUTATED DEL PEAK  4(2P25.3) WILD-TYPE
  CLUS_1                          19                           175
  CLUS_2                           3                           143
  CLUS_3                           2                           137
D52V10, multiclass

Clustering(53) Variable = Del Peak  5(2q22.1) mutation analysis
D53V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           5                            13
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D53V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           0                            15
  CLUS_3                           5                            13
D53V3, multiclass
D53V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          23                           120
  CLUS_2                          10                            75
  CLUS_3                           4                           145
D53V5, multiclass
D53V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q22.1) MUTATED      6    3
  DEL PEAK  5(2Q22.1) WILD-TYPE   67  118
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           3                           118
  CLUS_2                           6                            67
D53V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          22                           120
  CLUS_2                           1                           106
  CLUS_3                           0                           113
D53V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           0                            92
  CLUS_3                           1                            64
  CLUS_4                          22                           118
D53V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          33                           161
  CLUS_2                           4                           142
  CLUS_3                           5                           134
D53V10, multiclass

Clustering(54) Variable = Del Peak  6(2q37.3) mutation analysis
D54V1, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  6(2Q37.3) MUTATED"
clus
  DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
D54V2, multiclass
[1] "Remove cluster labels:"      "DEL PEAK  6(2Q37.3) MUTATED"
clus
  DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE 
                            1                            52 
                   TCGA-A5-A0G2                    TCGA-A5-A0G5 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GA                    TCGA-A5-A0GB 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GE                    TCGA-A5-A0GH 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GM                    TCGA-A5-A0GP 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-A5-A0GU                    TCGA-AP-A051 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A052                    TCGA-AP-A053 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A054                    TCGA-AP-A056 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05D                    TCGA-AP-A05H 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05J                    TCGA-AP-A05N 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A05P                    TCGA-AP-A0L8 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0L9                    TCGA-AP-A0LD 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LG                    TCGA-AP-A0LH 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LJ                    TCGA-AP-A0LN 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AP-A0LT                    TCGA-AP-A0LV 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05S                    TCGA-AX-A05T 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05U                    TCGA-AX-A05W 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A05Y                    TCGA-AX-A05Z 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A060                    TCGA-AX-A062 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A063                    TCGA-AX-A064 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06B                    TCGA-AX-A06F 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A06J                    TCGA-AX-A0IW 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-AX-A0J1                    TCGA-B5-A0JR 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0JZ                    TCGA-B5-A0K0 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-B5-A0K1                    TCGA-B5-A0K4 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-BG-A0LW                    TCGA-BG-A0MI 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
                   TCGA-BK-A0C9                    TCGA-BK-A0CC 
"DEL PEAK  6(2Q37.3) WILD-TYPE" "DEL PEAK  6(2Q37.3) WILD-TYPE" 
D54V3, multiclass
D54V4, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          31                           112
  CLUS_2                           6                            79
  CLUS_3                           8                           141
D54V5, multiclass
D54V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q37.3) MUTATED      5    5
  DEL PEAK  6(2Q37.3) WILD-TYPE   68  116
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           5                           116
  CLUS_2                           5                            68
D54V7, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          21                           121
  CLUS_2                           2                           105
  CLUS_3                           2                           111
D54V8, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           0                            92
  CLUS_3                           4                            61
  CLUS_4                          21                           119
D54V9, multiclass
        clus
vv       DEL PEAK  6(2Q37.3) MUTATED DEL PEAK  6(2Q37.3) WILD-TYPE
  CLUS_1                          34                           160
  CLUS_2                           8                           138
  CLUS_3                           6                           133
D54V10, multiclass

Clustering(55) Variable = Del Peak  7(3p14.2) mutation analysis
D55V1, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           6                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D55V2, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            14
  CLUS_3                           5                            13
D55V3, multiclass
D55V4, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          40                           103
  CLUS_2                          14                            71
  CLUS_3                           4                           145
D55V5, multiclass
D55V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) MUTATED     11    6
  DEL PEAK  7(3P14.2) WILD-TYPE   62  115
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                          11                            62
D55V7, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          41                           101
  CLUS_2                           2                           105
  CLUS_3                           1                           112
D55V8, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           1                            91
  CLUS_3                           2                            63
  CLUS_4                          41                            99
D55V9, multiclass
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  CLUS_1                          55                           139
  CLUS_2                           5                           141
  CLUS_3                           7                           132
D55V10, multiclass

Clustering(56) Variable = Del Peak  8(3q13.31) mutation analysis
D56V1, multiclass
        clus
vv       DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            4                             14
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D56V2, multiclass
        clus
vv       DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            3                             15
D56V3, multiclass
D56V4, multiclass
        clus
vv       DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE
  CLUS_1                           16                            127
  CLUS_2                            5                             80
  CLUS_3                            3                            146
D56V5, multiclass
D56V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q13.31) MUTATED      2    4
  DEL PEAK  8(3Q13.31) WILD-TYPE   71  117
        clus
vv       DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE
  CLUS_1                            4                            117
  CLUS_2                            2                             71
D56V7, multiclass
        clus
vv       DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE
  CLUS_1                           12                            130
  CLUS_2                            0                            107
  CLUS_3                            1                            112
D56V8, multiclass
        clus
vv       DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            0                             65
  CLUS_4                           12                            128
D56V9, multiclass
        clus
vv       DEL PEAK  8(3Q13.31) MUTATED DEL PEAK  8(3Q13.31) WILD-TYPE
  CLUS_1                           24                            170
  CLUS_2                            2                            144
  CLUS_3                            1                            138
D56V10, multiclass

Clustering(57) Variable = Del Peak  9(4p16.3) mutation analysis
D57V1, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           6                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D57V2, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            14
  CLUS_3                           6                            12
D57V3, multiclass
D57V4, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          54                            89
  CLUS_2                          14                            71
  CLUS_3                           7                           142
D57V5, multiclass
D57V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4P16.3) MUTATED     11   11
  DEL PEAK  9(4P16.3) WILD-TYPE   62  110
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          11                           110
  CLUS_2                          11                            62
D57V7, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          40                           102
  CLUS_2                           4                           103
  CLUS_3                           4                           109
D57V8, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                           1                            64
  CLUS_2                           2                            90
  CLUS_3                           5                            60
  CLUS_4                          40                           100
D57V9, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          68                           126
  CLUS_2                           8                           138
  CLUS_3                           6                           133
D57V10, multiclass

Clustering(58) Variable = Del Peak 10(4p15.31) mutation analysis
D58V1, multiclass
        clus
vv       DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            6                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D58V2, multiclass
        clus
vv       DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            6                             12
D58V3, multiclass
D58V4, multiclass
        clus
vv       DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE
  CLUS_1                           56                             87
  CLUS_2                           16                             69
  CLUS_3                            6                            143
D58V5, multiclass
D58V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 10(4P15.31) MUTATED     10   11
  DEL PEAK 10(4P15.31) WILD-TYPE   63  110
        clus
vv       DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE
  CLUS_1                           11                            110
  CLUS_2                           10                             63
D58V7, multiclass
        clus
vv       DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE
  CLUS_1                           40                            102
  CLUS_2                            3                            104
  CLUS_3                            4                            109
D58V8, multiclass
        clus
vv       DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            2                             90
  CLUS_3                            4                             61
  CLUS_4                           40                            100
D58V9, multiclass
        clus
vv       DEL PEAK 10(4P15.31) MUTATED DEL PEAK 10(4P15.31) WILD-TYPE
  CLUS_1                           72                            122
  CLUS_2                            8                            138
  CLUS_3                            6                            133
D58V10, multiclass

Clustering(59) Variable = Del Peak 11(4q22.1) mutation analysis
D59V1, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           7                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D59V2, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            14
  CLUS_3                           7                            11
D59V3, multiclass
D59V4, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          63                            80
  CLUS_2                          17                            68
  CLUS_3                           4                           145
D59V5, multiclass
D59V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(4Q22.1) MUTATED     12   10
  DEL PEAK 11(4Q22.1) WILD-TYPE   61  111
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          10                           111
  CLUS_2                          12                            61
D59V7, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          50                            92
  CLUS_2                           2                           105
  CLUS_3                           4                           109
D59V8, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                           1                            64
  CLUS_2                           1                            91
  CLUS_3                           2                            63
  CLUS_4                          52                            88
D59V9, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          81                           113
  CLUS_2                           7                           139
  CLUS_3                           6                           133
D59V10, multiclass

Clustering(60) Variable = Del Peak 12(4q34.3) mutation analysis
D60V1, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           7                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D60V2, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            14
  CLUS_3                           7                            11
D60V3, multiclass
D60V4, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          66                            77
  CLUS_2                          23                            62
  CLUS_3                           9                           140
D60V5, multiclass
D60V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q34.3) MUTATED     12   15
  DEL PEAK 12(4Q34.3) WILD-TYPE   61  106
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          15                           106
  CLUS_2                          12                            61
D60V7, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          59                            83
  CLUS_2                           3                           104
  CLUS_3                           6                           107
D60V8, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                           1                            64
  CLUS_2                           1                            91
  CLUS_3                           7                            58
  CLUS_4                          59                            81
D60V9, multiclass
        clus
vv       DEL PEAK 12(4Q34.3) MUTATED DEL PEAK 12(4Q34.3) WILD-TYPE
  CLUS_1                          88                           106
  CLUS_2                           8                           138
  CLUS_3                          14                           125
D60V10, multiclass

Clustering(61) Variable = Del Peak 13(5q11.2) mutation analysis
D61V1, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           6                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D61V2, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           1                            14
  CLUS_3                           6                            12
D61V3, multiclass
D61V4, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          63                            80
  CLUS_2                          16                            69
  CLUS_3                           6                           143
D61V5, multiclass
D61V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(5Q11.2) MUTATED     14    8
  DEL PEAK 13(5Q11.2) WILD-TYPE   59  113
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                           8                           113
  CLUS_2                          14                            59
D61V7, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          49                            93
  CLUS_2                           2                           105
  CLUS_3                           3                           110
D61V8, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           1                            91
  CLUS_3                           4                            61
  CLUS_4                          49                            91
D61V9, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          78                           116
  CLUS_2                          10                           136
  CLUS_3                          10                           129
D61V10, multiclass

Clustering(62) Variable = Del Peak 14(6q26) mutation analysis
D62V1, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         1                          12
  CLUS_2                         3                          15
  CLUS_3                         0                          14
  CLUS_4                         0                           8
D62V2, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         0                          20
  CLUS_2                         1                          14
  CLUS_3                         3                          15
D62V3, multiclass
D62V4, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        27                         116
  CLUS_2                        10                          75
  CLUS_3                         1                         148
D62V5, multiclass
D62V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(6Q26) MUTATED      5    4
  DEL PEAK 14(6Q26) WILD-TYPE   68  117
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         4                         117
  CLUS_2                         5                          68
D62V7, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        21                         121
  CLUS_2                         1                         106
  CLUS_3                         2                         111
D62V8, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                         2                          63
  CLUS_2                         1                          91
  CLUS_3                         1                          64
  CLUS_4                        20                         120
D62V9, multiclass
        clus
vv       DEL PEAK 14(6Q26) MUTATED DEL PEAK 14(6Q26) WILD-TYPE
  CLUS_1                        36                         158
  CLUS_2                         3                         143
  CLUS_3                         3                         136
D62V10, multiclass

Clustering(63) Variable = Del Peak 15(7p22.3) mutation analysis
D63V1, multiclass
        clus
vv       DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           7                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D63V2, multiclass
        clus
vv       DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           0                            15
  CLUS_3                           7                            11
D63V3, multiclass
D63V4, multiclass
        clus
vv       DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE
  CLUS_1                          42                           101
  CLUS_2                          12                            73
  CLUS_3                           4                           145
D63V5, multiclass
D63V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(7P22.3) MUTATED      9    6
  DEL PEAK 15(7P22.3) WILD-TYPE   64  115
        clus
vv       DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE
  CLUS_1                           6                           115
  CLUS_2                           9                            64
D63V7, multiclass
        clus
vv       DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE
  CLUS_1                          41                           101
  CLUS_2                           2                           105
  CLUS_3                           2                           111
D63V8, multiclass
        clus
vv       DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                           0                            92
  CLUS_3                           1                            64
  CLUS_4                          42                            98
D63V9, multiclass
        clus
vv       DEL PEAK 15(7P22.3) MUTATED DEL PEAK 15(7P22.3) WILD-TYPE
  CLUS_1                          56                           138
  CLUS_2                           6                           140
  CLUS_3                           5                           134
D63V10, multiclass

Clustering(64) Variable = Del Peak 16(7q11.22) mutation analysis
D64V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 16(7Q11.22) MUTATED"
clus
  DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 16(7Q11.22) WILD-TYPE" 
D64V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 16(7Q11.22) MUTATED"
clus
  DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05D 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 16(7Q11.22) WILD-TYPE" "DEL PEAK 16(7Q11.22) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 16(7Q11.22) WILD-TYPE" 
D64V3, multiclass
D64V4, multiclass
        clus
vv       DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE
  CLUS_1                           25                            118
  CLUS_2                            9                             76
  CLUS_3                            1                            148
D64V5, multiclass
D64V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(7Q11.22) MUTATED      8    2
  DEL PEAK 16(7Q11.22) WILD-TYPE   65  119
        clus
vv       DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE
  CLUS_1                            2                            119
  CLUS_2                            8                             65
D64V7, multiclass
        clus
vv       DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE
  CLUS_1                           23                            119
  CLUS_2                            1                            106
  CLUS_3                            0                            113
D64V8, multiclass
        clus
vv       DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE
  CLUS_1                            0                             65
  CLUS_2                            0                             92
  CLUS_3                            0                             65
  CLUS_4                           24                            116
D64V9, multiclass
        clus
vv       DEL PEAK 16(7Q11.22) MUTATED DEL PEAK 16(7Q11.22) WILD-TYPE
  CLUS_1                           30                            164
  CLUS_2                            4                            142
  CLUS_3                            4                            135
D64V10, multiclass

Clustering(65) Variable = Del Peak 17(7q31.1) mutation analysis
D65V1, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           3                            15
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D65V2, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           0                            15
  CLUS_3                           3                            15
D65V3, multiclass
D65V4, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                          31                           112
  CLUS_2                          10                            75
  CLUS_3                           1                           148
D65V5, multiclass
D65V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(7Q31.1) MUTATED      9    4
  DEL PEAK 17(7Q31.1) WILD-TYPE   64  117
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           4                           117
  CLUS_2                           9                            64
D65V7, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                          32                           110
  CLUS_2                           0                           107
  CLUS_3                           0                           113
D65V8, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           0                            92
  CLUS_3                           0                            65
  CLUS_4                          32                           108
D65V9, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                          40                           154
  CLUS_2                           3                           143
  CLUS_3                           4                           135
D65V10, multiclass

Clustering(66) Variable = Del Peak 18(7q36.3) mutation analysis
D66V1, multiclass
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           5                            13
  CLUS_3                           1                            13
  CLUS_4                           0                             8
D66V2, multiclass
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  CLUS_1                           1                            19
  CLUS_2                           1                            14
  CLUS_3                           4                            14
D66V3, multiclass
D66V4, multiclass
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  CLUS_1                          34                           109
  CLUS_2                          12                            73
  CLUS_3                           1                           148
D66V5, multiclass
D66V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(7Q36.3) MUTATED     12    3
  DEL PEAK 18(7Q36.3) WILD-TYPE   61  118
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  CLUS_1                           3                           118
  CLUS_2                          12                            61
D66V7, multiclass
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  CLUS_1                          41                           101
  CLUS_2                           0                           107
  CLUS_3                           0                           113
D66V8, multiclass
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  CLUS_1                           0                            65
  CLUS_2                           0                            92
  CLUS_3                           1                            64
  CLUS_4                          40                           100
D66V9, multiclass
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  CLUS_1                          48                           146
  CLUS_2                           3                           143
  CLUS_3                           5                           134
D66V10, multiclass

Clustering(67) Variable = Del Peak 19(8p23.2) mutation analysis
D67V1, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           6                            12
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D67V2, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           0                            15
  CLUS_3                           6                            12
D67V3, multiclass
D67V4, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          68                            75
  CLUS_2                          18                            67
  CLUS_3                           3                           146
D67V5, multiclass
D67V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8P23.2) MUTATED     11   13
  DEL PEAK 19(8P23.2) WILD-TYPE   62  108
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          13                           108
  CLUS_2                          11                            62
D67V7, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          52                            90
  CLUS_2                           2                           105
  CLUS_3                           5                           108
D67V8, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                           1                            64
  CLUS_2                           1                            91
  CLUS_3                           3                            62
  CLUS_4                          54                            86
D67V9, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          87                           107
  CLUS_2                           7                           139
  CLUS_3                           6                           133
D67V10, multiclass

Clustering(68) Variable = Del Peak 20(9p23) mutation analysis
D68V1, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         1                          12
  CLUS_2                         3                          15
  CLUS_3                         0                          14
  CLUS_4                         0                           8
D68V2, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         0                          20
  CLUS_2                         1                          14
  CLUS_3                         3                          15
D68V3, multiclass
D68V4, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        32                         111
  CLUS_2                        18                          67
  CLUS_3                         6                         143
D68V5, multiclass
D68V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 20(9P23) MUTATED      8    8
  DEL PEAK 20(9P23) WILD-TYPE   65  113
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         8                         113
  CLUS_2                         8                          65
D68V7, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        29                         113
  CLUS_2                         3                         104
  CLUS_3                         3                         110
D68V8, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         0                          65
  CLUS_2                         1                          91
  CLUS_3                         3                          62
  CLUS_4                        31                         109
D68V9, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        45                         149
  CLUS_2                        15                         131
  CLUS_3                         4                         135
D68V10, multiclass

Clustering(69) Variable = Del Peak 21(9q34.11) mutation analysis
D69V1, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            9                              9
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D69V2, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            9                              9
D69V3, multiclass
D69V4, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                           64                             79
  CLUS_2                           25                             60
  CLUS_3                           14                            135
D69V5, multiclass
D69V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(9Q34.11) MUTATED     18   15
  DEL PEAK 21(9Q34.11) WILD-TYPE   55  106
        clus
vv       DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                           18                             55
D69V7, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                           63                             79
  CLUS_2                            6                            101
  CLUS_3                            7                            106
D69V8, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                            0                             65
  CLUS_2                            2                             90
  CLUS_3                            7                             58
  CLUS_4                           67                             73
D69V9, multiclass
        clus
vv       DEL PEAK 21(9Q34.11) MUTATED DEL PEAK 21(9Q34.11) WILD-TYPE
  CLUS_1                           87                            107
  CLUS_2                           20                            126
  CLUS_3                           11                            128
D69V10, multiclass

Clustering(70) Variable = Del Peak 22(10q23.31) mutation analysis
D70V1, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             0                              13
  CLUS_2                             3                              15
  CLUS_3                             0                              14
  CLUS_4                             0                               8
D70V2, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             0                              20
  CLUS_2                             0                              15
  CLUS_3                             3                              15
D70V3, multiclass
D70V4, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                            39                             104
  CLUS_2                            16                              69
  CLUS_3                             6                             143
D70V5, multiclass
D70V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 22(10Q23.31) MUTATED      7   10
  DEL PEAK 22(10Q23.31) WILD-TYPE   66  111
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                            10                             111
  CLUS_2                             7                              66
D70V7, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                            30                             112
  CLUS_2                             4                             103
  CLUS_3                             3                             110
D70V8, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                             0                              65
  CLUS_2                             2                              90
  CLUS_3                             6                              59
  CLUS_4                            29                             111
D70V9, multiclass
        clus
vv       DEL PEAK 22(10Q23.31) MUTATED DEL PEAK 22(10Q23.31) WILD-TYPE
  CLUS_1                            53                             141
  CLUS_2                             8                             138
  CLUS_3                             8                             131
D70V10, multiclass

Clustering(71) Variable = Del Peak 23(11p15.5) mutation analysis
D71V1, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            3                             15
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D71V2, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            3                             15
D71V3, multiclass
D71V4, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           60                             83
  CLUS_2                           19                             66
  CLUS_3                            4                            145
D71V5, multiclass
D71V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(11P15.5) MUTATED      9    9
  DEL PEAK 23(11P15.5) WILD-TYPE   64  112
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                            9                            112
  CLUS_2                            9                             64
D71V7, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           43                             99
  CLUS_2                            2                            105
  CLUS_3                            3                            110
D71V8, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            1                             91
  CLUS_3                            1                             64
  CLUS_4                           45                             95
D71V9, multiclass
        clus
vv       DEL PEAK 23(11P15.5) MUTATED DEL PEAK 23(11P15.5) WILD-TYPE
  CLUS_1                           73                            121
  CLUS_2                           11                            135
  CLUS_3                            7                            132
D71V10, multiclass

Clustering(72) Variable = Del Peak 24(11q14.1) mutation analysis
D72V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 24(11Q14.1) MUTATED"
clus
  DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05H 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 24(11Q14.1) WILD-TYPE" 
D72V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 24(11Q14.1) MUTATED"
clus
  DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A052                     TCGA-AP-A053 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A054                     TCGA-AP-A056 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05A                     TCGA-AP-A05H 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05J                     TCGA-AP-A05N 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A05P                     TCGA-AP-A0L8 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0L9                     TCGA-AP-A0LD 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LG                     TCGA-AP-A0LH 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LJ                     TCGA-AP-A0LN 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AP-A0LT                     TCGA-AP-A0LV 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05S                     TCGA-AX-A05T 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05U                     TCGA-AX-A05W 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A05Y                     TCGA-AX-A05Z 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A060                     TCGA-AX-A062 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A063                     TCGA-AX-A064 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06B                     TCGA-AX-A06F 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A06J                     TCGA-AX-A0IW 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-AX-A0J1                     TCGA-B5-A0JR 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0JZ                     TCGA-B5-A0K0 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-B5-A0K1                     TCGA-B5-A0K4 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-BG-A0LW                     TCGA-BG-A0MI 
"DEL PEAK 24(11Q14.1) WILD-TYPE" "DEL PEAK 24(11Q14.1) WILD-TYPE" 
                    TCGA-BK-A0C9 
"DEL PEAK 24(11Q14.1) WILD-TYPE" 
D72V3, multiclass
D72V4, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                           40                            103
  CLUS_2                           13                             72
  CLUS_3                            4                            145
D72V5, multiclass
D72V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(11Q14.1) MUTATED      7    7
  DEL PEAK 24(11Q14.1) WILD-TYPE   66  114
        clus
vv       DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            7                             66
D72V7, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                           28                            114
  CLUS_2                            2                            105
  CLUS_3                            2                            111
D72V8, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            1                             64
  CLUS_4                           30                            110
D72V9, multiclass
        clus
vv       DEL PEAK 24(11Q14.1) MUTATED DEL PEAK 24(11Q14.1) WILD-TYPE
  CLUS_1                           48                            146
  CLUS_2                            9                            137
  CLUS_3                            4                            135
D72V10, multiclass

Clustering(73) Variable = Del Peak 25(11q25) mutation analysis
D73V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 25(11Q25) MUTATED"
clus
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 25(11Q25) WILD-TYPE" 
D73V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 25(11Q25) MUTATED"
clus
  DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A053                   TCGA-AP-A054 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A056                   TCGA-AP-A05A 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A05H                   TCGA-AP-A05J 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A05N                   TCGA-AP-A05P 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0L8                   TCGA-AP-A0L9 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LD                   TCGA-AP-A0LG 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LH                   TCGA-AP-A0LJ 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LN                   TCGA-AP-A0LT 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AP-A0LV                   TCGA-AX-A05S 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05T                   TCGA-AX-A05U 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05W                   TCGA-AX-A05Y 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A05Z                   TCGA-AX-A060 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A062                   TCGA-AX-A063 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A064                   TCGA-AX-A06B 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A06F                   TCGA-AX-A06J 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-AX-A0IW                   TCGA-AX-A0J1 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0JR                   TCGA-B5-A0JZ 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 25(11Q25) WILD-TYPE" "DEL PEAK 25(11Q25) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 25(11Q25) WILD-TYPE" 
D73V3, multiclass
D73V4, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         55                           88
  CLUS_2                         14                           71
  CLUS_3                          6                          143
D73V5, multiclass
D73V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(11Q25) MUTATED      8   11
  DEL PEAK 25(11Q25) WILD-TYPE   65  110
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         11                          110
  CLUS_2                          8                           65
D73V7, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         35                          107
  CLUS_2                          3                          104
  CLUS_3                          6                          107
D73V8, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                          1                           64
  CLUS_2                          1                           91
  CLUS_3                          3                           62
  CLUS_4                         39                          101
D73V9, multiclass
        clus
vv       DEL PEAK 25(11Q25) MUTATED DEL PEAK 25(11Q25) WILD-TYPE
  CLUS_1                         64                          130
  CLUS_2                         11                          135
  CLUS_3                          6                          133
D73V10, multiclass

Clustering(74) Variable = Del Peak 26(12q23.1) mutation analysis
D74V1, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 26(12Q23.1) MUTATED"
clus
  DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 26(12Q23.1) WILD-TYPE" 
D74V2, multiclass
[1] "Remove cluster labels:"       "DEL PEAK 26(12Q23.1) MUTATED"
clus
  DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE 
                             2                             51 
                    TCGA-A5-A0G2                     TCGA-A5-A0G5 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GA                     TCGA-A5-A0GB 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GE                     TCGA-A5-A0GH 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GM                     TCGA-A5-A0GP 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-A5-A0GU                     TCGA-AP-A051 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A053                     TCGA-AP-A054 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A056                     TCGA-AP-A05A 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05D                     TCGA-AP-A05J 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A05N                     TCGA-AP-A05P 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0L8                     TCGA-AP-A0L9 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LD                     TCGA-AP-A0LG 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LH                     TCGA-AP-A0LJ 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LN                     TCGA-AP-A0LT 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AP-A0LV                     TCGA-AX-A05S 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05T                     TCGA-AX-A05U 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05W                     TCGA-AX-A05Y 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A05Z                     TCGA-AX-A060 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A062                     TCGA-AX-A063 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A064                     TCGA-AX-A06B 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A06F                     TCGA-AX-A06J 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-AX-A0IW                     TCGA-AX-A0J1 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0JR                     TCGA-B5-A0JZ 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K0                     TCGA-B5-A0K1 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-B5-A0K4                     TCGA-BG-A0LW 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-BG-A0MI                     TCGA-BK-A0C9 
"DEL PEAK 26(12Q23.1) WILD-TYPE" "DEL PEAK 26(12Q23.1) WILD-TYPE" 
                    TCGA-BK-A0CC 
"DEL PEAK 26(12Q23.1) WILD-TYPE" 
D74V3, multiclass
D74V4, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                           31                            112
  CLUS_2                            9                             76
  CLUS_3                            0                            149
D74V5, multiclass
D74V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(12Q23.1) MUTATED     10    4
  DEL PEAK 26(12Q23.1) WILD-TYPE   63  117
        clus
vv       DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                            4                            117
  CLUS_2                           10                             63
D74V7, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                           21                            121
  CLUS_2                            1                            106
  CLUS_3                            1                            112
D74V8, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                            0                             65
  CLUS_2                            1                             91
  CLUS_3                            0                             65
  CLUS_4                           22                            118
D74V9, multiclass
        clus
vv       DEL PEAK 26(12Q23.1) MUTATED DEL PEAK 26(12Q23.1) WILD-TYPE
  CLUS_1                           39                            155
  CLUS_2                            3                            143
  CLUS_3                            3                            136
D74V10, multiclass

Clustering(75) Variable = Del Peak 27(12q24.33) mutation analysis
D75V1, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 27(12Q24.33) MUTATED"
clus
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 27(12Q24.33) WILD-TYPE" 
D75V2, multiclass
[1] "Remove cluster labels:"        "DEL PEAK 27(12Q24.33) MUTATED"
clus
  DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE 
                              2                              51 
                     TCGA-A5-A0G2                      TCGA-A5-A0G5 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GA                      TCGA-A5-A0GB 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GE                      TCGA-A5-A0GH 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GM                      TCGA-A5-A0GP 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-A5-A0GU                      TCGA-AP-A051 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A053                      TCGA-AP-A054 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A056                      TCGA-AP-A05A 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05D                      TCGA-AP-A05J 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A05N                      TCGA-AP-A05P 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0L8                      TCGA-AP-A0L9 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LD                      TCGA-AP-A0LG 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LH                      TCGA-AP-A0LJ 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LN                      TCGA-AP-A0LT 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AP-A0LV                      TCGA-AX-A05S 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05T                      TCGA-AX-A05U 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05W                      TCGA-AX-A05Y 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A05Z                      TCGA-AX-A060 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A062                      TCGA-AX-A063 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A064                      TCGA-AX-A06B 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A06F                      TCGA-AX-A06J 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-AX-A0IW                      TCGA-AX-A0J1 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0JR                      TCGA-B5-A0JZ 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K0                      TCGA-B5-A0K1 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-B5-A0K4                      TCGA-BG-A0LW 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-BG-A0MI                      TCGA-BK-A0C9 
"DEL PEAK 27(12Q24.33) WILD-TYPE" "DEL PEAK 27(12Q24.33) WILD-TYPE" 
                     TCGA-BK-A0CC 
"DEL PEAK 27(12Q24.33) WILD-TYPE" 
D75V3, multiclass
D75V4, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            40                             103
  CLUS_2                            12                              73
  CLUS_3                             2                             147
D75V5, multiclass
D75V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(12Q24.33) MUTATED      7    4
  DEL PEAK 27(12Q24.33) WILD-TYPE   66  117
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                             4                             117
  CLUS_2                             7                              66
D75V7, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            29                             113
  CLUS_2                             1                             106
  CLUS_3                             0                             113
D75V8, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                             0                              65
  CLUS_2                             1                              91
  CLUS_3                             1                              64
  CLUS_4                            28                             112
D75V9, multiclass
        clus
vv       DEL PEAK 27(12Q24.33) MUTATED DEL PEAK 27(12Q24.33) WILD-TYPE
  CLUS_1                            49                             145
  CLUS_2                             3                             143
  CLUS_3                             4                             135
D75V10, multiclass

Clustering(76) Variable = Del Peak 28(13q11) mutation analysis
D76V1, multiclass
        clus
vv       DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                          1                           12
  CLUS_2                          4                           14
  CLUS_3                          1                           13
  CLUS_4                          0                            8
D76V2, multiclass
        clus
vv       DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          1                           14
  CLUS_3                          5                           13
D76V3, multiclass
D76V4, multiclass
        clus
vv       DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                         47                           96
  CLUS_2                         17                           68
  CLUS_3                          8                          141
D76V5, multiclass
D76V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 28(13Q11) MUTATED     10    8
  DEL PEAK 28(13Q11) WILD-TYPE   63  113
        clus
vv       DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                          8                          113
  CLUS_2                         10                           63
D76V7, multiclass
        clus
vv       DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                         35                          107
  CLUS_2                          5                          102
  CLUS_3                          6                          107
D76V8, multiclass
        clus
vv       DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                          1                           64
  CLUS_2                          2                           90
  CLUS_3                          3                           62
  CLUS_4                         40                          100
D76V9, multiclass
        clus
vv       DEL PEAK 28(13Q11) MUTATED DEL PEAK 28(13Q11) WILD-TYPE
  CLUS_1                         61                          133
  CLUS_2                         13                          133
  CLUS_3                          9                          130
D76V10, multiclass

Clustering(77) Variable = Del Peak 29(13q14.2) mutation analysis
D77V1, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            3                             15
  CLUS_3                            1                             13
  CLUS_4                            0                              8
D77V2, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            4                             14
D77V3, multiclass
D77V4, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           48                             95
  CLUS_2                           21                             64
  CLUS_3                           11                            138
D77V5, multiclass
D77V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(13Q14.2) MUTATED     12   10
  DEL PEAK 29(13Q14.2) WILD-TYPE   61  111
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                           12                             61
D77V7, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           35                            107
  CLUS_2                            5                            102
  CLUS_3                            7                            106
D77V8, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                            2                             90
  CLUS_3                            3                             62
  CLUS_4                           40                            100
D77V9, multiclass
        clus
vv       DEL PEAK 29(13Q14.2) MUTATED DEL PEAK 29(13Q14.2) WILD-TYPE
  CLUS_1                           62                            132
  CLUS_2                           16                            130
  CLUS_3                           13                            126
D77V10, multiclass

Clustering(78) Variable = Del Peak 30(14q13.1) mutation analysis
D78V1, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            5                             13
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D78V2, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            5                             13
D78V3, multiclass
D78V4, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                           41                            102
  CLUS_2                            7                             78
  CLUS_3                            4                            145
D78V5, multiclass
D78V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(14Q13.1) MUTATED      7    4
  DEL PEAK 30(14Q13.1) WILD-TYPE   66  117
        clus
vv       DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                            4                            117
  CLUS_2                            7                             66
D78V7, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                           31                            111
  CLUS_2                            2                            105
  CLUS_3                            3                            110
D78V8, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            1                             91
  CLUS_3                            1                             64
  CLUS_4                           33                            107
D78V9, multiclass
        clus
vv       DEL PEAK 30(14Q13.1) MUTATED DEL PEAK 30(14Q13.1) WILD-TYPE
  CLUS_1                           45                            149
  CLUS_2                            5                            141
  CLUS_3                            9                            130
D78V10, multiclass

Clustering(79) Variable = Del Peak 31(15q15.1) mutation analysis
D79V1, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            6                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D79V2, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            6                             12
D79V3, multiclass
D79V4, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                           74                             69
  CLUS_2                           25                             60
  CLUS_3                            9                            140
D79V5, multiclass
D79V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q15.1) MUTATED     14   14
  DEL PEAK 31(15Q15.1) WILD-TYPE   59  107
        clus
vv       DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                           14                            107
  CLUS_2                           14                             59
D79V7, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                           60                             82
  CLUS_2                            4                            103
  CLUS_3                            8                            105
D79V8, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            1                             91
  CLUS_3                            7                             58
  CLUS_4                           63                             77
D79V9, multiclass
        clus
vv       DEL PEAK 31(15Q15.1) MUTATED DEL PEAK 31(15Q15.1) WILD-TYPE
  CLUS_1                           96                             98
  CLUS_2                           13                            133
  CLUS_3                           12                            127
D79V10, multiclass

Clustering(80) Variable = Del Peak 32(15q23) mutation analysis
D80V1, multiclass
        clus
vv       DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                          0                           13
  CLUS_2                          6                           12
  CLUS_3                          0                           14
  CLUS_4                          0                            8
D80V2, multiclass
        clus
vv       DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                          0                           20
  CLUS_2                          0                           15
  CLUS_3                          6                           12
D80V3, multiclass
D80V4, multiclass
        clus
vv       DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                         65                           78
  CLUS_2                         16                           69
  CLUS_3                          5                          144
D80V5, multiclass
D80V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 32(15Q23) MUTATED      8   12
  DEL PEAK 32(15Q23) WILD-TYPE   65  109
        clus
vv       DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                         12                          109
  CLUS_2                          8                           65
D80V7, multiclass
        clus
vv       DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                         45                           97
  CLUS_2                          2                          105
  CLUS_3                          7                          106
D80V8, multiclass
        clus
vv       DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                          1                           64
  CLUS_2                          1                           91
  CLUS_3                          5                           60
  CLUS_4                         47                           93
D80V9, multiclass
        clus
vv       DEL PEAK 32(15Q23) MUTATED DEL PEAK 32(15Q23) WILD-TYPE
  CLUS_1                         76                          118
  CLUS_2                         11                          135
  CLUS_3                         10                          129
D80V10, multiclass

Clustering(81) Variable = Del Peak 33(16p13.3) mutation analysis
D81V1, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            7                             11
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D81V2, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                            6                             12
D81V3, multiclass
D81V4, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           51                             92
  CLUS_2                           17                             68
  CLUS_3                            3                            146
D81V5, multiclass
D81V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(16P13.3) MUTATED      9    7
  DEL PEAK 33(16P13.3) WILD-TYPE   64  114
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            7                            114
  CLUS_2                            9                             64
D81V7, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           40                            102
  CLUS_2                            3                            104
  CLUS_3                            1                            112
D81V8, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            2                             90
  CLUS_3                            2                             63
  CLUS_4                           39                            101
D81V9, multiclass
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  CLUS_1                           64                            130
  CLUS_2                            7                            139
  CLUS_3                            7                            132
D81V10, multiclass

Clustering(82) Variable = Del Peak 34(16q21) mutation analysis
D82V1, multiclass
        clus
vv       DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                          0                           13
  CLUS_2                          8                           10
  CLUS_3                          1                           13
  CLUS_4                          0                            8
D82V2, multiclass
        clus
vv       DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                          1                           19
  CLUS_2                          0                           15
  CLUS_3                          8                           10
D82V3, multiclass
D82V4, multiclass
        clus
vv       DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                         80                           63
  CLUS_2                         28                           57
  CLUS_3                         13                          136
D82V5, multiclass
D82V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 34(16Q21) MUTATED     13   21
  DEL PEAK 34(16Q21) WILD-TYPE   60  100
        clus
vv       DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                         21                          100
  CLUS_2                         13                           60
D82V7, multiclass
        clus
vv       DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                         70                           72
  CLUS_2                          7                          100
  CLUS_3                         12                          101
D82V8, multiclass
        clus
vv       DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                          9                           56
  CLUS_2                          5                           87
  CLUS_3                          7                           58
  CLUS_4                         68                           72
D82V9, multiclass
        clus
vv       DEL PEAK 34(16Q21) MUTATED DEL PEAK 34(16Q21) WILD-TYPE
  CLUS_1                         99                           95
  CLUS_2                         16                          130
  CLUS_3                         20                          119
D82V10, multiclass

Clustering(83) Variable = Del Peak 35(16q23.1) mutation analysis
D83V1, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            9                              9
  CLUS_3                            2                             12
  CLUS_4                            0                              8
D83V2, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            1                             14
  CLUS_3                           10                              8
D83V3, multiclass
D83V4, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           81                             62
  CLUS_2                           29                             56
  CLUS_3                           15                            134
D83V5, multiclass
D83V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(16Q23.1) MUTATED     18   23
  DEL PEAK 35(16Q23.1) WILD-TYPE   55   98
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           23                             98
  CLUS_2                           18                             55
D83V7, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           76                             66
  CLUS_2                            9                             98
  CLUS_3                           13                            100
D83V8, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           10                             55
  CLUS_2                            7                             85
  CLUS_3                           10                             55
  CLUS_4                           71                             69
D83V9, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                          104                             90
  CLUS_2                           18                            128
  CLUS_3                           22                            117
D83V10, multiclass

Clustering(84) Variable = Del Peak 36(17p13.3) mutation analysis
D84V1, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            8                             10
  CLUS_3                            1                             13
  CLUS_4                            0                              8
D84V2, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            0                             15
  CLUS_3                            8                             10
D84V3, multiclass
D84V4, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           57                             86
  CLUS_2                           21                             64
  CLUS_3                           10                            139
D84V5, multiclass
D84V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(17P13.3) MUTATED     11   15
  DEL PEAK 36(17P13.3) WILD-TYPE   62  106
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           15                            106
  CLUS_2                           11                             62
D84V7, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           54                             88
  CLUS_2                            3                            104
  CLUS_3                            5                            108
D84V8, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            6                             59
  CLUS_4                           55                             85
D84V9, multiclass
        clus
vv       DEL PEAK 36(17P13.3) MUTATED DEL PEAK 36(17P13.3) WILD-TYPE
  CLUS_1                           76                            118
  CLUS_2                           16                            130
  CLUS_3                           10                            129
D84V10, multiclass

Clustering(85) Variable = Del Peak 37(17p12) mutation analysis
D85V1, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                          0                           13
  CLUS_2                          9                            9
  CLUS_3                          1                           13
  CLUS_4                          0                            8
D85V2, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                          1                           19
  CLUS_2                          0                           15
  CLUS_3                          9                            9
D85V3, multiclass
D85V4, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         69                           74
  CLUS_2                         23                           62
  CLUS_3                         10                          139
D85V5, multiclass
D85V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 37(17P12) MUTATED     12   17
  DEL PEAK 37(17P12) WILD-TYPE   61  104
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         17                          104
  CLUS_2                         12                           61
D85V7, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         69                           73
  CLUS_2                          3                          104
  CLUS_3                          4                          109
D85V8, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                          1                           64
  CLUS_2                          0                           92
  CLUS_3                          4                           61
  CLUS_4                         71                           69
D85V9, multiclass
        clus
vv       DEL PEAK 37(17P12) MUTATED DEL PEAK 37(17P12) WILD-TYPE
  CLUS_1                         91                          103
  CLUS_2                         17                          129
  CLUS_3                          8                          131
D85V10, multiclass

Clustering(86) Variable = Del Peak 38(17p11.2) mutation analysis
D86V1, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            8                             10
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D86V2, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            8                             10
D86V3, multiclass
D86V4, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           62                             81
  CLUS_2                           21                             64
  CLUS_3                            9                            140
D86V5, multiclass
D86V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(17P11.2) MUTATED     11   13
  DEL PEAK 38(17P11.2) WILD-TYPE   62  108
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           11                             62
D86V7, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           58                             84
  CLUS_2                            3                            104
  CLUS_3                            4                            109
D86V8, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            3                             62
  CLUS_4                           61                             79
D86V9, multiclass
        clus
vv       DEL PEAK 38(17P11.2) MUTATED DEL PEAK 38(17P11.2) WILD-TYPE
  CLUS_1                           80                            114
  CLUS_2                           15                            131
  CLUS_3                            7                            132
D86V10, multiclass

Clustering(87) Variable = Del Peak 39(17q11.2) mutation analysis
D87V1, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            7                             11
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D87V2, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            7                             11
D87V3, multiclass
D87V4, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                           49                             94
  CLUS_2                           20                             65
  CLUS_3                           12                            137
D87V5, multiclass
D87V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(17Q11.2) MUTATED     10   13
  DEL PEAK 39(17Q11.2) WILD-TYPE   63  108
        clus
vv       DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           10                             63
D87V7, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                           50                             92
  CLUS_2                            3                            104
  CLUS_3                            6                            107
D87V8, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            1                             91
  CLUS_3                            5                             60
  CLUS_4                           52                             88
D87V9, multiclass
        clus
vv       DEL PEAK 39(17Q11.2) MUTATED DEL PEAK 39(17Q11.2) WILD-TYPE
  CLUS_1                           65                            129
  CLUS_2                           17                            129
  CLUS_3                            9                            130
D87V10, multiclass

Clustering(88) Variable = Del Peak 40(17q21.2) mutation analysis
D88V1, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            9                              9
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D88V2, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            9                              9
D88V3, multiclass
D88V4, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                           53                             90
  CLUS_2                           23                             62
  CLUS_3                           11                            138
D88V5, multiclass
D88V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(17Q21.2) MUTATED     12   11
  DEL PEAK 40(17Q21.2) WILD-TYPE   61  110
        clus
vv       DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                           11                            110
  CLUS_2                           12                             61
D88V7, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                           49                             93
  CLUS_2                            3                            104
  CLUS_3                            5                            108
D88V8, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            4                             61
  CLUS_4                           52                             88
D88V9, multiclass
        clus
vv       DEL PEAK 40(17Q21.2) MUTATED DEL PEAK 40(17Q21.2) WILD-TYPE
  CLUS_1                           71                            123
  CLUS_2                           16                            130
  CLUS_3                            8                            131
D88V10, multiclass

Clustering(89) Variable = Del Peak 41(18q23) mutation analysis
D89V1, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                          0                           13
  CLUS_2                          4                           14
  CLUS_3                          1                           13
  CLUS_4                          0                            8
D89V2, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                          1                           19
  CLUS_2                          1                           14
  CLUS_3                          3                           15
D89V3, multiclass
D89V4, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         55                           88
  CLUS_2                         15                           70
  CLUS_3                          8                          141
D89V5, multiclass
D89V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 41(18Q23) MUTATED     13    9
  DEL PEAK 41(18Q23) WILD-TYPE   60  112
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                          9                          112
  CLUS_2                         13                           60
D89V7, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         41                          101
  CLUS_2                          3                          104
  CLUS_3                          5                          108
D89V8, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                          1                           64
  CLUS_2                          1                           91
  CLUS_3                          4                           61
  CLUS_4                         43                           97
D89V9, multiclass
        clus
vv       DEL PEAK 41(18Q23) MUTATED DEL PEAK 41(18Q23) WILD-TYPE
  CLUS_1                         66                          128
  CLUS_2                         12                          134
  CLUS_3                         10                          129
D89V10, multiclass

Clustering(90) Variable = Del Peak 42(19p13.3) mutation analysis
D90V1, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                           12                              6
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D90V2, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            1                             14
  CLUS_3                           11                              7
D90V3, multiclass
D90V4, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           91                             52
  CLUS_2                           24                             61
  CLUS_3                            5                            144
D90V5, multiclass
D90V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 42(19P13.3) MUTATED     18   13
  DEL PEAK 42(19P13.3) WILD-TYPE   55  108
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                           18                             55
D90V7, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           82                             60
  CLUS_2                            2                            105
  CLUS_3                            2                            111
D90V8, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            0                             92
  CLUS_3                            3                             62
  CLUS_4                           82                             58
D90V9, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                          114                             80
  CLUS_2                           11                            135
  CLUS_3                           10                            129
D90V10, multiclass

Clustering(91) Variable = Del Peak 43(19p12) mutation analysis
D91V1, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 43(19P12) MUTATED"
clus
  DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 43(19P12) WILD-TYPE" 
D91V2, multiclass
[1] "Remove cluster labels:"     "DEL PEAK 43(19P12) MUTATED"
clus
  DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE 
                           2                           51 
                  TCGA-A5-A0G2                   TCGA-A5-A0G5 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GA                   TCGA-A5-A0GB 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GE                   TCGA-A5-A0GH 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GM                   TCGA-A5-A0GP 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-A5-A0GU                   TCGA-AP-A051 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A052                   TCGA-AP-A053 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A054                   TCGA-AP-A056 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05A                   TCGA-AP-A05H 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05J                   TCGA-AP-A05N 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A05P                   TCGA-AP-A0L8 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0L9                   TCGA-AP-A0LD 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LG                   TCGA-AP-A0LH 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LJ                   TCGA-AP-A0LN 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AP-A0LT                   TCGA-AP-A0LV 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05S                   TCGA-AX-A05T 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05U                   TCGA-AX-A05W 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A05Y                   TCGA-AX-A05Z 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A060                   TCGA-AX-A062 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A063                   TCGA-AX-A064 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A06B                   TCGA-AX-A06F 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A06J                   TCGA-AX-A0IW 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-AX-A0J1                   TCGA-B5-A0JR 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-B5-A0K0                   TCGA-B5-A0K1 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-B5-A0K4                   TCGA-BG-A0LW 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-BG-A0MI                   TCGA-BK-A0C9 
"DEL PEAK 43(19P12) WILD-TYPE" "DEL PEAK 43(19P12) WILD-TYPE" 
                  TCGA-BK-A0CC 
"DEL PEAK 43(19P12) WILD-TYPE" 
D91V3, multiclass
D91V4, multiclass
        clus
vv       DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                         29                          114
  CLUS_2                         11                           74
  CLUS_3                          3                          146
D91V5, multiclass
D91V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 43(19P12) MUTATED      5    5
  DEL PEAK 43(19P12) WILD-TYPE   68  116
        clus
vv       DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                          5                          116
  CLUS_2                          5                           68
D91V7, multiclass
        clus
vv       DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                         20                          122
  CLUS_2                          1                          106
  CLUS_3                          3                          110
D91V8, multiclass
        clus
vv       DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                          1                           64
  CLUS_2                          0                           92
  CLUS_3                          2                           63
  CLUS_4                         21                          119
D91V9, multiclass
        clus
vv       DEL PEAK 43(19P12) MUTATED DEL PEAK 43(19P12) WILD-TYPE
  CLUS_1                         36                          158
  CLUS_2                          5                          141
  CLUS_3                          6                          133
D91V10, multiclass

Clustering(92) Variable = Del Peak 44(19q13.43) mutation analysis
D92V1, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                             0                              13
  CLUS_2                             8                              10
  CLUS_3                             1                              13
  CLUS_4                             0                               8
D92V2, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                             1                              19
  CLUS_2                             0                              15
  CLUS_3                             8                              10
D92V3, multiclass
D92V4, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            34                             109
  CLUS_2                            12                              73
  CLUS_3                             2                             147
D92V5, multiclass
D92V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 44(19Q13.43) MUTATED      6    7
  DEL PEAK 44(19Q13.43) WILD-TYPE   67  114
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                             7                             114
  CLUS_2                             6                              67
D92V7, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            29                             113
  CLUS_2                             1                             106
  CLUS_3                             2                             111
D92V8, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                             1                              64
  CLUS_2                             0                              92
  CLUS_3                             2                              63
  CLUS_4                            29                             111
D92V9, multiclass
        clus
vv       DEL PEAK 44(19Q13.43) MUTATED DEL PEAK 44(19Q13.43) WILD-TYPE
  CLUS_1                            45                             149
  CLUS_2                             5                             141
  CLUS_3                             5                             134
D92V10, multiclass

Clustering(93) Variable = Del Peak 45(20p12.1) mutation analysis
D93V1, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            1                             17
  CLUS_3                            1                             13
  CLUS_4                            0                              8
D93V2, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            1                             14
  CLUS_3                            1                             17
D93V3, multiclass
D93V4, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           12                            131
  CLUS_2                            6                             79
  CLUS_3                            4                            145
D93V5, multiclass
D93V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 45(20P12.1) MUTATED      5    5
  DEL PEAK 45(20P12.1) WILD-TYPE   68  116
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            5                            116
  CLUS_2                            5                             68
D93V7, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           12                            130
  CLUS_2                            4                            103
  CLUS_3                            3                            110
D93V8, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                            3                             62
  CLUS_2                            1                             91
  CLUS_3                            1                             64
  CLUS_4                           14                            126
D93V9, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           18                            176
  CLUS_2                            5                            141
  CLUS_3                            5                            134
D93V10, multiclass

Clustering(94) Variable = Del Peak 46(22q11.1) mutation analysis
D94V1, multiclass
        clus
vv       DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            6                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D94V2, multiclass
        clus
vv       DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            6                             12
D94V3, multiclass
D94V4, multiclass
        clus
vv       DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE
  CLUS_1                           39                            104
  CLUS_2                           18                             67
  CLUS_3                           13                            136
D94V5, multiclass
D94V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(22Q11.1) MUTATED      7   10
  DEL PEAK 46(22Q11.1) WILD-TYPE   66  111
        clus
vv       DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE
  CLUS_1                           10                            111
  CLUS_2                            7                             66
D94V7, multiclass
        clus
vv       DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE
  CLUS_1                           34                            108
  CLUS_2                            4                            103
  CLUS_3                            5                            108
D94V8, multiclass
        clus
vv       DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE
  CLUS_1                            1                             64
  CLUS_2                            2                             90
  CLUS_3                            4                             61
  CLUS_4                           36                            104
D94V9, multiclass
        clus
vv       DEL PEAK 46(22Q11.1) MUTATED DEL PEAK 46(22Q11.1) WILD-TYPE
  CLUS_1                           53                            141
  CLUS_2                           16                            130
  CLUS_3                            9                            130
D94V10, multiclass

Clustering(95) Variable = Del Peak 47(22q12.1) mutation analysis
D95V1, multiclass
        clus
vv       DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            6                             12
  CLUS_3                            0                             14
  CLUS_4                            0                              8
D95V2, multiclass
        clus
vv       DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE
  CLUS_1                            0                             20
  CLUS_2                            0                             15
  CLUS_3                            6                             12
D95V3, multiclass
D95V4, multiclass
        clus
vv       DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE
  CLUS_1                           41                            102
  CLUS_2                           21                             64
  CLUS_3                           13                            136
D95V5, multiclass
D95V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 47(22Q12.1) MUTATED      6   13
  DEL PEAK 47(22Q12.1) WILD-TYPE   67  108
        clus
vv       DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE
  CLUS_1                           13                            108
  CLUS_2                            6                             67
D95V7, multiclass
        clus
vv       DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE
  CLUS_1                           39                            103
  CLUS_2                            4                            103
  CLUS_3                            6                            107
D95V8, multiclass
        clus
vv       DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE
  CLUS_1                            2                             63
  CLUS_2                            2                             90
  CLUS_3                            3                             62
  CLUS_4                           42                             98
D95V9, multiclass
        clus
vv       DEL PEAK 47(22Q12.1) MUTATED DEL PEAK 47(22Q12.1) WILD-TYPE
  CLUS_1                           57                            137
  CLUS_2                           18                            128
  CLUS_3                            9                            130
D95V10, multiclass

Clustering(96) Variable = Del Peak 48(22q13.31) mutation analysis
D96V1, multiclass
        clus
vv       DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE
  CLUS_1                             0                              13
  CLUS_2                            10                               8
  CLUS_3                             0                              14
  CLUS_4                             0                               8
D96V2, multiclass
        clus
vv       DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE
  CLUS_1                             0                              20
  CLUS_2                             0                              15
  CLUS_3                            10                               8
D96V3, multiclass
D96V4, multiclass
        clus
vv       DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE
  CLUS_1                            67                              76
  CLUS_2                            24                              61
  CLUS_3                            13                             136
D96V5, multiclass
D96V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 48(22Q13.31) MUTATED     15   15
  DEL PEAK 48(22Q13.31) WILD-TYPE   58  106
        clus
vv       DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE
  CLUS_1                            15                             106
  CLUS_2                            15                              58
D96V7, multiclass
        clus
vv       DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE
  CLUS_1                            63                              79
  CLUS_2                             4                             103
  CLUS_3                             6                             107
D96V8, multiclass
        clus
vv       DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE
  CLUS_1                             1                              64
  CLUS_2                             2                              90
  CLUS_3                             4                              61
  CLUS_4                            66                              74
D96V9, multiclass
        clus
vv       DEL PEAK 48(22Q13.31) MUTATED DEL PEAK 48(22Q13.31) WILD-TYPE
  CLUS_1                            87                             107
  CLUS_2                            19                             127
  CLUS_3                            10                             129
D96V10, multiclass

Clustering(97) Variable = Del Peak 49(22q13.32) mutation analysis
D97V1, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                             0                              13
  CLUS_2                             9                               9
  CLUS_3                             0                              14
  CLUS_4                             0                               8
D97V2, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                             0                              20
  CLUS_2                             0                              15
  CLUS_3                             9                               9
D97V3, multiclass
D97V4, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            68                              75
  CLUS_2                            28                              57
  CLUS_3                            15                             134
D97V5, multiclass
D97V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 49(22Q13.32) MUTATED     17   16
  DEL PEAK 49(22Q13.32) WILD-TYPE   56  105
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            16                             105
  CLUS_2                            17                              56
D97V7, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            64                              78
  CLUS_2                             5                             102
  CLUS_3                             8                             105
D97V8, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                             2                              63
  CLUS_2                             3                              89
  CLUS_3                             5                              60
  CLUS_4                            67                              73
D97V9, multiclass
        clus
vv       DEL PEAK 49(22Q13.32) MUTATED DEL PEAK 49(22Q13.32) WILD-TYPE
  CLUS_1                            90                             104
  CLUS_2                            21                             125
  CLUS_3                            12                             127
D97V10, multiclass

Clustering(98) Variable = Del Peak 50(Xp21.1) mutation analysis
D98V1, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           7                            11
  CLUS_3                           0                            14
  CLUS_4                           0                             8
D98V2, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           0                            20
  CLUS_2                           0                            15
  CLUS_3                           7                            11
D98V3, multiclass
D98V4, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          45                            98
  CLUS_2                          15                            70
  CLUS_3                           7                           142
D98V5, multiclass
D98V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 50(XP21.1) MUTATED     11   11
  DEL PEAK 50(XP21.1) WILD-TYPE   62  110
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          11                           110
  CLUS_2                          11                            62
D98V7, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          38                           104
  CLUS_2                           2                           105
  CLUS_3                           5                           108
D98V8, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                           2                            63
  CLUS_2                           1                            91
  CLUS_3                           3                            62
  CLUS_4                          39                           101
D98V9, multiclass
        clus
vv       DEL PEAK 50(XP21.1) MUTATED DEL PEAK 50(XP21.1) WILD-TYPE
  CLUS_1                          60                           134
  CLUS_2                           9                           137
  CLUS_3                           8                           131
D98V10, multiclass
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
