Clinical Features Time to Death AGE GENDER KARNOFSKY.PERFORMANCE.SCORE NUMBERPACKYEARSSMOKED TOBACCOSMOKINGHISTORYINDICATOR DISTANT.METASTASIS LYMPH.NODE.METASTASIS NUMBER.OF.LYMPH.NODES TUMOR.STAGECODE NEOPLASM.DISEASESTAGE nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q t-test_P t-test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q t-test_P t-test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 14 (11%) 117 0.084448 1 0.48985 1 0.3409 1 0.49411 1 0.38477 1 0.90772 1 0.5262 1 0.012872 1 0.65978 1 NA NA 0.44729 1 1q gain 28 (21%) 103 0.03034 1 0.020896 1 0.63091 1 0.25706 1 0.70368 1 0.48661 1 0.35492 1 0.26592 1 0.96238 1 NA NA 0.45045 1 2p gain 23 (18%) 108 0.46808 1 0.8532 1 0.00038389 0.273 0.25706 1 0.77788 1 0.62578 1 0.54406 1 0.48578 1 0.50057 1 NA NA 0.54278 1 2q gain 10 (8%) 121 0.61972 1 0.63245 1 0.71191 1 0.25706 1 0.44288 1 0.45527 1 0.61364 1 0.26244 1 0.31613 1 NA NA 0.14132 1 3p gain 28 (21%) 103 0.54637 1 0.28493 1 0.33727 1 0.86873 1 0.92347 1 0.94239 1 0.72773 1 0.04064 1 0.22843 1 NA NA 0.063192 1 3q gain 37 (28%) 94 0.19183 1 0.40522 1 0.11945 1 0.66547 1 0.6726 1 0.81483 1 0.48007 1 0.050435 1 0.22265 1 NA NA 0.12944 1 4p gain 8 (6%) 123 0.089192 1 0.81918 1 0.6787 1 NA NA 0.39432 1 0.56916 1 0.27362 1 0.40782 1 0.00020105 0.143 NA NA 0.26585 1 4q gain 3 (2%) 128 0.30299 1 0.51542 1 1 1 NA NA 0.28444 1 0.8602 1 1 1 0.6914 1 NA NA NA NA 0.40242 1 5p gain 38 (29%) 93 0.75492 1 0.36914 1 0.65776 1 0.092415 1 0.41733 1 0.32975 1 0.93375 1 0.0025213 1 0.05376 1 NA NA 0.37459 1 5q gain 18 (14%) 113 0.29653 1 0.54294 1 0.55981 1 0.35951 1 0.98243 1 0.8655 1 1 1 0.094421 1 7.1846e-05 0.0513 NA NA 0.034895 1 6p gain 7 (5%) 124 0.23677 1 0.37859 1 1 1 0.45018 1 0.98907 1 0.37783 1 1 1 0.5498 1 0.0080067 1 NA NA 0.80241 1 6q gain 4 (3%) 127 0.24864 1 0.59106 1 0.57162 1 NA NA 0.77778 1 0.066309 1 0.68851 1 0.13099 1 0.0075969 1 NA NA 0.56603 1 7p gain 39 (30%) 92 0.49655 1 0.36573 1 0.66176 1 0.14099 1 0.36096 1 0.09675 1 0.63322 1 0.20758 1 0.7365 1 NA NA 0.2716 1 7q gain 37 (28%) 94 0.62903 1 0.51799 1 0.04535 1 0.21152 1 0.1464 1 0.40693 1 0.54735 1 0.091573 1 0.87948 1 NA NA 0.32553 1 8p gain 14 (11%) 117 0.9018 1 0.18519 1 1 1 0.82097 1 0.21444 1 0.1246 1 0.86102 1 0.61525 1 0.0015997 1 NA NA 0.55509 1 8q gain 35 (27%) 96 0.93276 1 0.46501 1 1 1 0.31451 1 0.2306 1 0.85459 1 0.70551 1 0.83326 1 0.015967 1 NA NA 0.19543 1 9p gain 13 (10%) 118 0.037044 1 0.024182 1 0.18283 1 0.84195 1 0.026537 1 0.081924 1 0.43147 1 0.6328 1 0.0016095 1 NA NA 0.09954 1 9q gain 11 (8%) 120 0.082544 1 0.25561 1 0.46748 1 0.786 1 0.03278 1 0.82802 1 0.25677 1 0.16848 1 2.8677e-06 0.00206 NA NA 0.00099538 0.706 10p gain 26 (20%) 105 0.84217 1 0.81676 1 1 1 0.59264 1 0.71512 1 0.7637 1 0.64981 1 0.27782 1 0.66608 1 NA NA 0.081452 1 10q gain 7 (5%) 124 0.40188 1 0.113 1 1 1 NA NA 0.68941 1 0.8611 1 0.39234 1 0.2096 1 0.535 1 NA NA 0.27523 1 11p gain 6 (5%) 125 0.055115 1 0.10942 1 0.33623 1 0.087451 1 0.61777 1 0.20376 1 0.74013 1 0.27502 1 0.10013 1 NA NA 0.53078 1 11q gain 6 (5%) 125 0.17696 1 0.49836 1 0.33623 1 0.62376 1 0.63096 1 0.57732 1 1 1 0.38285 1 0.33651 1 NA NA 0.68689 1 12p gain 22 (17%) 109 0.93884 1 0.84398 1 1 1 0.46507 1 0.94352 1 0.45031 1 0.90804 1 0.95698 1 0.020518 1 NA NA 0.1687 1 12q gain 17 (13%) 114 0.36039 1 0.46387 1 0.23664 1 0.34655 1 0.53164 1 0.84717 1 0.37154 1 0.84484 1 0.081578 1 NA NA 0.051522 1 13q gain 21 (16%) 110 0.38294 1 0.59743 1 1 1 0.63992 1 0.14535 1 0.93465 1 0.15616 1 0.41748 1 0.87078 1 NA NA 0.60244 1 14q gain 11 (8%) 120 0.95518 1 0.6326 1 0.46748 1 0.47127 1 0.3407 1 0.34805 1 0.43872 1 0.42163 1 7.0995e-05 0.0508 NA NA 0.46833 1 15q gain 4 (3%) 127 0.08363 1 0.82812 1 1 1 NA NA NA NA 0.5096 1 0.24783 1 0.60252 1 0.92204 1 NA NA 1 1 16p gain 10 (8%) 121 4.1012e-05 0.0294 0.45523 1 0.27015 1 0.6163 1 0.2123 1 0.43125 1 0.078749 1 0.81866 1 0.068027 1 NA NA 0.85594 1 16q gain 12 (9%) 119 0.0015657 1 0.31922 1 0.073277 1 0.46787 1 0.43934 1 0.4015 1 0.36946 1 0.68386 1 0.052496 1 NA NA 0.72404 1 17p gain 8 (6%) 123 0.41535 1 0.96425 1 0.41478 1 NA NA 0.68307 1 0.95233 1 0.33596 1 0.25993 1 3.0394e-06 0.00218 NA NA 0.030598 1 17q gain 23 (18%) 108 0.64029 1 0.91651 1 1 1 0.042073 1 0.27993 1 0.064003 1 0.20372 1 0.065197 1 0.93601 1 NA NA 0.10153 1 18p gain 23 (18%) 108 0.59767 1 0.65374 1 0.59794 1 0.46864 1 0.37498 1 0.072222 1 0.33512 1 0.45588 1 0.6663 1 NA NA 0.54278 1 18q gain 7 (5%) 124 0.026015 1 0.78803 1 1 1 NA NA 0.8476 1 0.20376 1 0.17474 1 0.88867 1 0.26851 1 NA NA 0.80241 1 19p gain 13 (10%) 118 0.93961 1 0.87649 1 1 1 0.13586 1 0.66155 1 0.50719 1 1 1 0.75196 1 0.063441 1 NA NA 0.55509 1 19q gain 26 (20%) 105 0.24792 1 0.9509 1 0.21837 1 0.22564 1 0.57489 1 0.35926 1 0.85011 1 0.83943 1 0.73949 1 NA NA 0.85774 1 20p gain 48 (37%) 83 0.32399 1 0.8441 1 0.14305 1 0.7528 1 0.43524 1 0.57802 1 0.19125 1 0.8029 1 0.41888 1 NA NA 0.59139 1 20q gain 52 (40%) 79 0.73397 1 0.39971 1 1 1 0.63165 1 0.27948 1 0.081469 1 1 1 0.92275 1 0.40194 1 NA NA 0.43329 1 21q gain 24 (18%) 107 0.4373 1 0.21642 1 1 1 0.90661 1 0.6391 1 0.75619 1 0.69033 1 0.1521 1 0.92899 1 NA NA 0.020465 1 22q gain 11 (8%) 120 0.076064 1 0.54351 1 0.72937 1 0.60554 1 0.48697 1 0.0070852 1 0.82933 1 0.25636 1 0.54032 1 NA NA 0.7328 1 Xq gain 6 (5%) 125 0.35055 1 0.82906 1 0.64141 1 NA NA 0.50267 1 0.84452 1 0.068578 1 0.12033 1 0.72273 1 NA NA 0.53078 1 2p loss 7 (5%) 124 0.58779 1 0.65439 1 0.6787 1 0.90435 1 0.23782 1 0.53544 1 0.76039 1 0.30727 1 NA NA NA NA 0.32828 1 2q loss 15 (11%) 116 0.022752 1 0.65177 1 0.75986 1 0.49186 1 0.25051 1 0.88961 1 1 1 0.17876 1 0.2525 1 NA NA 0.5781 1 3p loss 9 (7%) 122 0.94252 1 0.64512 1 0.22842 1 NA NA 0.49385 1 0.048034 1 0.8041 1 0.5569 1 0.86167 1 NA NA 0.91877 1 4p loss 25 (19%) 106 0.50324 1 0.92209 1 1 1 0.09483 1 0.54086 1 0.87067 1 0.18305 1 0.033808 1 0.26122 1 NA NA 0.35806 1 4q loss 23 (18%) 108 0.70974 1 0.82539 1 0.79531 1 0.09483 1 0.95112 1 0.92503 1 0.20372 1 0.83943 1 0.72138 1 NA NA 0.42215 1 5p loss 12 (9%) 119 0.37978 1 0.32515 1 0.17677 1 0.099796 1 0.97611 1 0.15158 1 0.82933 1 0.96988 1 0.78735 1 NA NA 0.15083 1 5q loss 32 (24%) 99 0.99839 1 0.33477 1 0.81514 1 0.66599 1 0.26183 1 0.17995 1 0.13453 1 0.38139 1 0.37819 1 NA NA 0.28646 1 6p loss 16 (12%) 115 0.92732 1 0.56451 1 0.54805 1 6.6253e-05 0.0474 0.66086 1 0.55981 1 0.49993 1 0.072947 1 0.34929 1 NA NA 0.054913 1 6q loss 27 (21%) 104 0.42754 1 0.87412 1 0.62016 1 0.24229 1 0.35206 1 0.028979 1 0.11709 1 0.12936 1 0.23497 1 NA NA 0.025334 1 8p loss 47 (36%) 84 0.23345 1 0.57491 1 0.29577 1 0.29011 1 0.16206 1 1 1 0.018323 1 0.34728 1 0.55172 1 NA NA 0.27174 1 8q loss 5 (4%) 126 0.53097 1 0.086151 1 0.59945 1 NA NA 0.88307 1 0.69707 1 0.10557 1 0.76728 1 0.26042 1 NA NA 0.47265 1 9p loss 38 (29%) 93 0.95463 1 0.51654 1 0.27824 1 0.74332 1 0.28366 1 0.16708 1 0.18165 1 0.72153 1 0.89191 1 NA NA 0.66325 1 9q loss 36 (27%) 95 0.81218 1 0.87559 1 0.18508 1 0.65069 1 0.19832 1 0.4441 1 0.53988 1 0.60556 1 0.06708 1 NA NA 0.61401 1 10p loss 18 (14%) 113 0.48075 1 0.8965 1 1 1 0.018574 1 0.80428 1 0.033331 1 0.26449 1 0.80948 1 0.040943 1 NA NA 0.83925 1 10q loss 26 (20%) 105 0.42711 1 0.023102 1 0.80491 1 0.13385 1 0.74374 1 0.23766 1 0.92443 1 0.71925 1 0.84878 1 NA NA 0.69996 1 11p loss 43 (33%) 88 0.61748 1 0.21842 1 0.67035 1 0.035918 1 0.98217 1 0.74665 1 0.043672 1 0.77051 1 0.24112 1 NA NA 0.036315 1 11q loss 32 (24%) 99 0.7147 1 0.52999 1 0.81514 1 0.7079 1 0.32454 1 0.48649 1 0.26147 1 0.26777 1 0.20252 1 NA NA 0.53709 1 12p loss 5 (4%) 126 0.93656 1 0.29779 1 0.3296 1 NA NA 0.67758 1 0.17296 1 1 1 0.76728 1 0.87656 1 NA NA 0.86223 1 12q loss 8 (6%) 123 0.10176 1 0.74966 1 0.6787 1 0.52764 1 0.92288 1 0.947 1 1 1 0.19868 1 0.51475 1 NA NA 0.90603 1 13q loss 18 (14%) 113 0.87442 1 0.68452 1 0.24001 1 0.015904 1 0.72336 1 0.06492 1 0.78596 1 0.81274 1 0.58198 1 NA NA 0.55916 1 14q loss 22 (17%) 109 0.20983 1 0.24147 1 0.28023 1 0.77236 1 0.71941 1 0.82719 1 0.74148 1 0.54627 1 0.67615 1 NA NA 0.14932 1 15q loss 15 (11%) 116 0.47244 1 0.82424 1 0.52773 1 0.76343 1 0.88305 1 0.19371 1 0.12039 1 0.95574 1 0.94606 1 NA NA 0.67241 1 16p loss 14 (11%) 117 0.45859 1 0.20516 1 0.18832 1 0.0945 1 0.44345 1 0.0040408 1 0.86102 1 0.55438 1 0.9758 1 NA NA 0.83226 1 16q loss 15 (11%) 116 0.71832 1 0.30959 1 0.35363 1 0.19118 1 0.94614 1 7.368e-05 0.0525 0.86621 1 0.052558 1 0.34367 1 NA NA 0.5781 1 17p loss 36 (27%) 95 0.34743 1 0.71244 1 0.65936 1 0.85582 1 0.35779 1 0.66317 1 0.37544 1 0.5564 1 0.70577 1 NA NA 0.72981 1 17q loss 5 (4%) 126 0.88676 1 0.40675 1 1 1 0.76998 1 0.52583 1 1 1 1 1 0.028072 1 NA NA NA NA 0.46038 1 18p loss 19 (15%) 112 0.16184 1 0.050561 1 0.56848 1 0.29542 1 0.67386 1 0.96612 1 0.71264 1 0.71846 1 0.85531 1 NA NA 0.49489 1 18q loss 36 (27%) 95 0.037503 1 0.023217 1 0.25901 1 0.5701 1 0.37911 1 0.41226 1 0.80637 1 0.91965 1 0.89651 1 NA NA 0.33644 1 19p loss 8 (6%) 123 0.34132 1 0.91276 1 1 1 NA NA 0.92934 1 0.30733 1 0.0053078 1 0.023715 1 0.26487 1 NA NA 0.023714 1 19q loss 3 (2%) 128 0.00088914 0.631 0.90038 1 0.57162 1 NA NA NA NA 0.39878 1 0.60441 1 0.67721 1 0.69206 1 NA NA 0.78124 1 20p loss 5 (4%) 126 0.83434 1 0.22277 1 1 1 NA NA 0.0059565 1 0.40219 1 1 1 0.88482 1 0.72384 1 NA NA 1 1 21q loss 14 (11%) 117 0.996 1 0.020363 1 0.75026 1 0.38342 1 0.89387 1 0.96137 1 0.32964 1 0.17357 1 0.69687 1 NA NA 0.4647 1 22q loss 25 (19%) 106 0.11487 1 0.51791 1 0.79864 1 0.18684 1 0.80765 1 0.10895 1 0.11891 1 0.3109 1 0.62666 1 NA NA 0.58313 1 Xq loss 4 (3%) 127 0.31013 1 0.71433 1 1 1 NA NA 0.34856 1 0.60207 1 1 1 0.0047123 1 NA NA NA NA 0.030517 1