Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	34 (27%)	92	0.41483	1	0.7641	1	0.27439	1	0.90393	1	0.66776	1	0.65509	1
1q gain	48 (38%)	78	0.020812	1	0.47865	1	0.34514	1	0.56753	1	0.10692	1	0.43462	1
2p gain	17 (13%)	109	0.083321	1	0.3032	1	0.10044	1	0.095149	1	0.094303	1	0.041765	1
2q gain	5 (4%)	121	0.084258	1	0.61135	1	0.069385	1	0.15266	1	1	1	1	1
3p gain	21 (17%)	105	0.56809	1	0.6849	1	0.71731	1	0.036738	1	0.74781	1	0.66667	1
3q gain	62 (49%)	64	1.3039e-05	0.0057	0.36176	1	0.019099	1	0.047802	1	0.72968	1	0.030041	1
4q gain	3 (2%)	123	0.11451	1	0.11046	1	0.45349	1	0.48498	1	0.20327	1	0.34325	1
5p gain	41 (33%)	85	0.020411	1	1	1	0.93487	1	0.72792	1	0.079197	1	0.22138	1
5q gain	13 (10%)	113	0.57215	1	0.39372	1	1	1	1	1	0.53442	1	0.38332	1
6p gain	18 (14%)	108	0.10815	1	0.0039931	1	0.026151	1	0.09872	1	0.023653	1	0.061852	1
6q gain	9 (7%)	117	0.50097	1	0.0085213	1	0.053618	1	0.0060124	1	0.30927	1	0.070824	1
7p gain	7 (6%)	119	0.48042	1	0.1946	1	0.19845	1	0.41011	1	0.21504	1	0.3151	1
7q gain	11 (9%)	115	0.10891	1	0.33959	1	0.28492	1	1	1	0.57614	1	1	1
8p gain	10 (8%)	116	0.64386	1	0.40951	1	0.11966	1	0.16718	1	0.41614	1	0.7606	1
8q gain	22 (17%)	104	0.034911	1	0.025308	1	0.10374	1	0.38262	1	0.47999	1	0.44055	1
9p gain	12 (10%)	114	0.32035	1	0.7479	1	0.47013	1	0.014762	1	0.92578	1	0.31154	1
9q gain	11 (9%)	115	0.66888	1	0.23944	1	0.43442	1	0.036138	1	0.7719	1	0.27247	1
10p gain	8 (6%)	118	0.65341	1	0.90138	1	0.88327	1	0.725	1	0.2956	1	1	1
10q gain	4 (3%)	122	0.45652	1	0.56753	1	0.80978	1	0.14527	1	0.38652	1	0.69328	1
12p gain	14 (11%)	112	0.010278	1	0.41817	1	0.38518	1	0.003215	1	0.16257	1	0.33435	1
12q gain	10 (8%)	116	0.021347	1	0.84088	1	0.63694	1	0.051459	1	0.54535	1	0.8375	1
13q gain	6 (5%)	120	0.039702	1	0.49122	1	0.16768	1	0.488	1	0.46394	1	0.69328	1
14q gain	10 (8%)	116	0.30504	1	1	1	0.20122	1	0.12408	1	0.28892	1	0.73926	1
15q gain	13 (10%)	113	0.0018421	0.785	1	1	0.31338	1	0.79425	1	0.93272	1	0.93141	1
16p gain	14 (11%)	112	0.045563	1	0.17141	1	0.5061	1	0.061451	1	0.37985	1	0.4547	1
16q gain	10 (8%)	116	0.91999	1	0.54614	1	0.36371	1	0.012239	1	0.38662	1	0.3614	1
17p gain	5 (4%)	121	0.61568	1	0.21352	1	0.26939	1	0.012639	1	0.15928	1	0.028966	1
17q gain	13 (10%)	113	0.015669	1	0.013148	1	0.025318	1	0.014803	1	0.34756	1	0.098978	1
18p gain	12 (10%)	114	0.4077	1	0.69199	1	0.60585	1	0.02714	1	0.22964	1	0.18968	1
18q gain	7 (6%)	119	0.075675	1	1	1	0.48553	1	0.0083231	1	0.31581	1	0.13626	1
19p gain	8 (6%)	118	0.53027	1	0.72701	1	0.54679	1	0.33064	1	0.14616	1	0.89386	1
19q gain	23 (18%)	103	0.21842	1	0.67192	1	0.40858	1	0.030908	1	0.006797	1	0.094001	1
20p gain	32 (25%)	94	0.00068852	0.297	0.47814	1	0.85589	1	0.082957	1	0.41308	1	0.56222	1
20q gain	38 (30%)	88	0.00053386	0.231	0.36167	1	0.51214	1	0.16696	1	0.5476	1	0.43166	1
21q gain	14 (11%)	112	0.55557	1	0.93808	1	0.2655	1	0.9045	1	0.16257	1	0.50382	1
22q gain	8 (6%)	118	0.040304	1	0.90138	1	0.32574	1	0.0037652	1	0.029795	1	0.88412	1
Xq gain	6 (5%)	120	0.43502	1	0.19933	1	0.76251	1	0.33197	1	0.32171	1	0.72108	1
1q loss	3 (2%)	123	0.26164	1	0.78637	1	1	1	0.48498	1	0.64672	1	1	1
2p loss	3 (2%)	123	0.11451	1	0.18243	1	0.25061	1	0.67281	1	0.77289	1	0.7924	1
2q loss	5 (4%)	121	0.084258	1	0.029484	1	0.085916	1	0.26668	1	1	1	1	1
3p loss	27 (21%)	99	0.31977	1	0.0016044	0.685	0.19767	1	0.00043636	0.19	0.012713	1	0.0040604	1
4p loss	41 (33%)	85	0.0018581	0.79	0.045913	1	0.27851	1	0.95615	1	0.11012	1	0.76259	1
4q loss	24 (19%)	102	6.3952e-06	0.0028	0.77329	1	0.097593	1	0.29677	1	0.4742	1	0.50105	1
5p loss	3 (2%)	123	0.34629	1	0.78637	1	0.79037	1	1	1	1	1	0.61594	1
5q loss	20 (16%)	106	0.031649	1	0.053472	1	0.52697	1	0.034512	1	0.057162	1	0.023906	1
6p loss	12 (10%)	114	0.92589	1	0.053573	1	0.38445	1	0.43213	1	0.4777	1	0.92577	1
6q loss	23 (18%)	103	0.20811	1	0.58678	1	0.28714	1	0.77742	1	0.36627	1	0.65238	1
7p loss	6 (5%)	120	0.062536	1	0.87519	1	0.55849	1	0.33197	1	0.095835	1	0.48263	1
7q loss	13 (10%)	113	0.012929	1	0.70726	1	0.035213	1	0.18813	1	0.013587	1	0.090911	1
8p loss	27 (21%)	99	0.43487	1	0.25881	1	0.4453	1	0.79514	1	0.9249	1	0.92086	1
8q loss	6 (5%)	120	1	1	0.49122	1	0.3259	1	0.33197	1	0.59598	1	0.016339	1
9p loss	12 (10%)	114	0.32035	1	0.86362	1	0.74002	1	0.77555	1	0.28892	1	0.28702	1
9q loss	11 (9%)	115	0.66888	1	0.288	1	0.014491	1	0.27457	1	0.84359	1	0.053414	1
10p loss	22 (17%)	104	0.015242	1	0.79503	1	0.13882	1	0.1025	1	0.58284	1	0.39691	1
10q loss	24 (19%)	102	0.012907	1	0.95754	1	0.79013	1	0.1808	1	0.27861	1	1	1
11p loss	27 (21%)	99	0.08225	1	0.33229	1	0.87441	1	0.94092	1	0.31218	1	0.66019	1
11q loss	30 (24%)	96	0.0096482	1	0.74839	1	0.77141	1	0.17719	1	0.34502	1	0.53048	1
12p loss	19 (15%)	107	0.0021794	0.924	0.20931	1	0.73874	1	0.72048	1	0.32609	1	0.35474	1
12q loss	4 (3%)	122	0.035589	1	0.45985	1	0.28599	1	0.2981	1	1	1	0.80923	1
13q loss	23 (18%)	103	0.42999	1	0.034078	1	0.48922	1	0.065926	1	0.91058	1	0.19121	1
14q loss	7 (6%)	119	0.42417	1	0.14267	1	0.023362	1	0.0035534	1	0.037308	1	0.0048672	1
15q loss	8 (6%)	118	0.0015747	0.674	1	1	0.31611	1	0.11609	1	0.90518	1	0.80722	1
16p loss	8 (6%)	118	0.41463	1	0.14442	1	0.12934	1	0.0063841	1	0.79375	1	0.16868	1
16q loss	14 (11%)	112	0.82052	1	0.023745	1	0.0010697	0.46	0.00052322	0.227	0.61364	1	0.0079218	1
17p loss	27 (21%)	99	0.014774	1	0.0044384	1	0.04114	1	0.059647	1	0.028194	1	0.11069	1
17q loss	5 (4%)	121	0.61568	1	0.029484	1	0.085916	1	0.26668	1	0.37007	1	0.51892	1
18p loss	16 (13%)	110	0.55016	1	0.46457	1	0.038908	1	0.098811	1	0.36694	1	0.064244	1
18q loss	24 (19%)	102	0.11208	1	0.021437	1	0.00042831	0.187	0.003342	1	0.10291	1	0.0023675	1
19p loss	12 (10%)	114	0.43984	1	0.37536	1	0.25835	1	0.39658	1	0.19475	1	0.0010837	0.465
19q loss	6 (5%)	120	0.49514	1	0.56923	1	0.48553	1	0.17255	1	0.59598	1	0.029756	1
20p loss	8 (6%)	118	0.53027	1	0.41762	1	0.59555	1	0.37569	1	1	1	0.59534	1
21q loss	13 (10%)	113	0.00097604	0.421	0.52971	1	0.85783	1	0.80978	1	1	1	0.86755	1
22q loss	13 (10%)	113	0.86958	1	1	1	0.86723	1	0.51224	1	1	1	0.92577	1