Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	67 (53%)	59	0.010299	1	0.098011	1	0.3859	1	0.63478	1	0.58034	1	0.56573	1
Amp Peak  2(1q44)	68 (54%)	58	0.0090513	1	0.7855	1	0.57298	1	1	1	0.20975	1	0.5463	1
Amp Peak  3(2p24.3)	33 (26%)	93	0.14732	1	0.50456	1	0.060541	1	0.068937	1	0.086885	1	0.0056044	1
Amp Peak  4(2q32.3)	20 (16%)	106	0.00023823	0.0715	0.081746	1	0.00064472	0.193	0.0061458	1	0.79469	1	0.018513	1
Amp Peak  5(3q26.2)	95 (75%)	31	1.2588e-06	0.000391	0.58524	1	0.093139	1	0.33229	1	0.84959	1	0.10529	1
Amp Peak  6(3q28)	94 (75%)	32	6.3662e-07	0.000199	0.70238	1	0.049248	1	0.36347	1	0.8181	1	0.062998	1
Amp Peak  7(4q12)	12 (10%)	114	0.50694	1	0.16538	1	0.08257	1	0.0043607	1	0.21598	1	0.020828	1
Amp Peak  8(6p21.33)	35 (28%)	91	0.0049459	1	0.008632	1	0.0028566	0.82	0.055283	1	0.18249	1	0.031924	1
Amp Peak  9(6q12)	24 (19%)	102	0.34239	1	0.13487	1	0.14331	1	0.0085782	1	0.2386	1	0.18147	1
Amp Peak 10(8q24.21)	53 (42%)	73	0.0020677	0.6	0.84904	1	0.64722	1	0.5345	1	0.089099	1	0.49105	1
Amp Peak 11(8q24.21)	48 (38%)	78	0.0043206	1	0.28698	1	0.70467	1	0.38597	1	0.33956	1	0.85218	1
Amp Peak 12(9p24.1)	28 (22%)	98	0.058746	1	0.58581	1	0.80572	1	0.52752	1	0.23351	1	0.68528	1
Amp Peak 13(11q13.3)	18 (14%)	108	0.038427	1	0.72637	1	0.017077	1	0.029055	1	0.10718	1	0.88524	1
Amp Peak 14(11q22.1)	27 (21%)	99	7.3834e-05	0.0225	0.072349	1	0.078156	1	0.22307	1	0.013247	1	0.12332	1
Amp Peak 15(13q22.1)	27 (21%)	99	0.0053383	1	0.38656	1	0.20498	1	0.22416	1	0.16226	1	0.019537	1
Amp Peak 16(14q24.1)	25 (20%)	101	0.68921	1	0.78032	1	0.28249	1	0.11306	1	0.70535	1	0.95534	1
Amp Peak 17(15q26.3)	30 (24%)	96	0.0058351	1	0.44713	1	0.31633	1	0.53936	1	0.92776	1	1	1
Amp Peak 18(16p13.2)	27 (21%)	99	0.075677	1	0.20128	1	0.87008	1	0.73882	1	0.77946	1	0.80611	1
Amp Peak 19(16p13.13)	30 (24%)	96	0.061791	1	0.13945	1	0.6472	1	0.23496	1	0.68238	1	0.46536	1
Amp Peak 20(17q12)	21 (17%)	105	0.063094	1	0.051602	1	0.012578	1	0.095149	1	0.11156	1	0.065029	1
Amp Peak 21(17q25.1)	34 (27%)	92	0.011254	1	0.043009	1	0.041117	1	0.429	1	0.47976	1	0.60713	1
Amp Peak 22(19q13.31)	43 (34%)	83	0.012391	1	0.64191	1	0.28739	1	0.15429	1	0.099471	1	0.87442	1
Amp Peak 23(20q11.21)	61 (48%)	65	0.0009981	0.295	0.37146	1	0.2829	1	0.25567	1	0.53201	1	0.72184	1
Amp Peak 24(Xq28)	36 (29%)	90	0.79479	1	0.13874	1	0.67264	1	0.90893	1	0.043333	1	0.13264	1
Del Peak  1(1p36.23)	20 (16%)	106	0.082886	1	0.032895	1	0.0012472	0.365	0.0012989	0.379	0.47387	1	0.00020265	0.0612
Del Peak  2(1p13.1)	12 (10%)	114	0.74963	1	0.37536	1	1	1	1	1	0.31583	1	0.91866	1
Del Peak  3(2q22.1)	22 (17%)	104	0.05246	1	0.63268	1	0.90643	1	0.8212	1	0.91058	1	0.95253	1
Del Peak  4(2q37.1)	51 (40%)	75	0.004309	1	0.03674	1	0.20053	1	0.33312	1	0.17181	1	0.07656	1
Del Peak  5(3p11.1)	51 (40%)	75	0.00066847	0.199	0.027172	1	0.39013	1	0.0023225	0.669	0.12906	1	0.0070629	1
Del Peak  6(4q22.1)	39 (31%)	87	1.4978e-06	0.000464	0.061649	1	0.072253	1	0.53389	1	0.19961	1	0.29656	1
Del Peak  7(4q35.2)	47 (37%)	79	1.3808e-05	0.00427	0.032342	1	0.049923	1	0.16024	1	0.57485	1	0.32327	1
Del Peak  8(5q14.3)	36 (29%)	90	0.02446	1	0.17428	1	0.63097	1	0.14402	1	0.21556	1	0.34619	1
Del Peak  9(6p24.3)	18 (14%)	108	0.61898	1	0.19169	1	0.25841	1	0.15863	1	0.4994	1	1	1
Del Peak 10(6p12.1)	20 (16%)	106	0.67376	1	0.50249	1	0.46642	1	0.12304	1	0.81894	1	0.1346	1
Del Peak 11(6q26)	48 (38%)	78	0.13351	1	0.33038	1	0.36286	1	0.67594	1	0.5447	1	0.49496	1
Del Peak 12(7q34)	28 (22%)	98	0.0052657	1	0.86016	1	0.12004	1	0.66785	1	0.06827	1	0.19763	1
Del Peak 13(10q23.31)	39 (31%)	87	0.022125	1	0.66782	1	0.27249	1	0.019662	1	0.7391	1	0.86992	1
Del Peak 14(10q26.3)	38 (30%)	88	0.00013319	0.0405	0.51596	1	0.42107	1	0.39785	1	0.70753	1	0.77655	1
Del Peak 15(11p15.1)	40 (32%)	86	0.30056	1	0.08751	1	0.16168	1	0.066465	1	0.3509	1	0.50167	1
Del Peak 16(11q25)	74 (59%)	52	0.002231	0.645	0.14855	1	0.12726	1	0.10576	1	0.026739	1	0.44663	1
Del Peak 17(13q13.3)	52 (41%)	74	0.14388	1	0.091646	1	0.39763	1	0.8072	1	0.019671	1	0.10669	1
Del Peak 18(14q32.31)	25 (20%)	101	0.077353	1	0.008392	1	0.0011751	0.347	0.0012213	0.359	0.023958	1	0.0051992	1
Del Peak 19(15q15.1)	29 (23%)	97	2.6783e-05	0.00825	0.34646	1	0.30326	1	0.29167	1	0.17641	1	0.086884	1
Del Peak 20(16q11.2)	25 (20%)	101	0.74968	1	0.03625	1	0.010279	1	0.0081198	1	0.13908	1	0.0018819	0.548
Del Peak 21(16q23.1)	28 (22%)	98	1	1	0.020248	1	0.0002345	0.0706	3.4544e-05	0.0106	0.14254	1	0.00019738	0.0598
Del Peak 22(17p12)	42 (33%)	84	0.011057	1	0.13588	1	0.23336	1	0.75548	1	0.093152	1	0.043952	1
Del Peak 23(17q25.3)	22 (17%)	104	0.045076	1	0.00090681	0.269	0.035891	1	0.034512	1	0.048371	1	0.042595	1
Del Peak 24(19p13.3)	39 (31%)	87	0.0030231	0.862	1	1	0.0029499	0.844	0.069879	1	0.031766	1	3.5431e-05	0.0108
Del Peak 25(20p12.1)	17 (13%)	109	0.84591	1	0.34233	1	0.7457	1	1	1	0.43372	1	0.45101	1
Del Peak 26(21q21.1)	27 (21%)	99	0.061792	1	0.37215	1	0.56909	1	0.38658	1	0.5265	1	0.80046	1
Del Peak 27(Xp11.3)	37 (29%)	89	0.0044095	1	0.0042447	1	0.21082	1	0.19198	1	0.011857	1	0.0037528	1
Del Peak 28(Xq21.33)	27 (21%)	99	0.011901	1	0.0044384	1	0.16396	1	0.090148	1	0.10126	1	0.0095519	1