Clinical Features CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL nMutated (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q PIK3CA 9 (23%) 30 0.098021 1 0.35845 1 0.38724 1 0.73404 1 1 1 0.14088 1 TMCC1 4 (10%) 35 NA NA 1 1 0.48886 1 0.053715 1 0.31626 1 0.79319 1 PRG4 5 (13%) 34 0.29412 1 0.82993 1 0.020528 1 0.10033 1 0.15209 1 0.38943 1 CDC27 5 (13%) 34 0.39706 1 0.2205 1 0.1283 1 0.06806 1 0.83418 1 0.1405 1 NFE2L2 6 (15%) 33 0.71384 1 0.50562 1 0.58375 1 0.22994 1 0.12341 1 0.16218 1 MAPK1 3 (8%) 36 0.14118 1 1 1 0.39758 1 0.67994 1 0.28997 1 1 1 SSX7 3 (8%) 36 NA NA 0.7619 1 0.23992 1 0.051683 1 0.4239 1 1 1 UGT3A2 3 (8%) 36 NA NA 0.7619 1 0.016596 0.83 0.051683 1 0.4239 1 0.25473 1 PRB2 4 (10%) 35 NA NA 1 1 0.48886 1 0.053715 1 0.17431 1 0.50213 1