Clinical Features Time to Death AGE PRIMARY.SITE.OF.DISEASE GENDER HISTOLOGICAL.TYPE PATHOLOGY.T PATHOLOGY.N PATHOLOGICSPREAD(M) TUMOR.STAGE RADIATIONS.RADIATION.REGIMENINDICATION COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q Amp Peak 1(1q31.1) 134 (23%) 441 0.46579 1 0.29179 1 0.026825 1 0.23602 1 0.094616 1 0.38142 1 0.05393 1 0.17454 1 0.034328 1 0.035693 1 0.50286 1 0.015164 1 Amp Peak 2(2q33.1) 123 (21%) 452 0.1355 1 0.38546 1 0.030984 1 1 1 0.0037913 1 0.6855 1 0.0012838 1 0.5409 1 0.022711 1 0.10346 1 0.51565 1 0.024561 1 Amp Peak 3(5p12) 107 (19%) 468 0.016233 1 0.37245 1 0.15139 1 0.74798 1 0.056832 1 0.39631 1 0.043106 1 0.35396 1 0.1915 1 0.37909 1 0.028904 1 0.070763 1 Amp Peak 4(5q22.3) 59 (10%) 516 0.75011 1 0.86517 1 0.44472 1 0.89109 1 0.31568 1 0.90716 1 0.1764 1 0.031968 1 0.11986 1 1 1 0.079835 1 0.49173 1 Amp Peak 5(6p21.1) 146 (25%) 429 0.4893 1 0.68242 1 0.031387 1 0.14981 1 0.0023647 1 0.21545 1 3.1731e-05 0.0275 0.10895 1 0.00033072 0.28 0.0013572 1 0.14483 1 0.0027256 1 Amp Peak 6(7p21.3) 337 (59%) 238 0.30404 1 0.10336 1 0.029239 1 0.73424 1 0.0002248 0.191 0.88922 1 1.2259e-05 0.0107 0.027397 1 4.4171e-06 0.00389 0.08822 1 0.089157 1 0.033851 1 Amp Peak 7(8p11.23) 196 (34%) 379 0.47196 1 0.75158 1 0.62466 1 0.48214 1 0.23223 1 0.40868 1 0.50339 1 0.41259 1 0.88021 1 0.49849 1 0.17484 1 0.63331 1 Amp Peak 8(8p11.21) 238 (41%) 337 0.63298 1 0.59699 1 0.63634 1 0.20442 1 0.12003 1 0.50004 1 0.33269 1 0.3046 1 0.47474 1 0.74225 1 0.027656 1 0.40947 1 Amp Peak 9(8q12.1) 309 (54%) 266 0.90741 1 0.19033 1 0.3028 1 0.61492 1 0.0092958 1 0.12843 1 0.085267 1 0.02565 1 0.072564 1 0.042302 1 0.032772 1 0.027031 1 Amp Peak 10(8q24.21) 345 (60%) 230 0.54494 1 0.23572 1 0.086269 1 0.39404 1 0.011288 1 0.14304 1 0.17098 1 0.055061 1 0.23315 1 0.093131 1 0.099738 1 0.058527 1 Amp Peak 11(10q22.3) 35 (6%) 540 0.8192 1 0.3027 1 1 1 0.48674 1 0.93182 1 0.14143 1 0.0081358 1 0.91197 1 0.11628 1 0.43408 1 0.90993 1 0.088306 1 Amp Peak 12(11p15.5) 129 (22%) 446 0.70883 1 0.060779 1 0.1452 1 0.54889 1 0.001443 1 0.29348 1 0.7122 1 0.38473 1 0.80824 1 0.11951 1 0.70621 1 0.42046 1 Amp Peak 13(12p13.32) 144 (25%) 431 0.26022 1 0.069629 1 0.82906 1 0.49962 1 0.35146 1 0.38673 1 0.053603 1 0.085873 1 0.062511 1 0.69773 1 0.61222 1 0.44155 1 Amp Peak 14(13q12.13) 371 (65%) 204 0.12557 1 0.31391 1 0.0024574 1 0.72692 1 1.1785e-09 1.05e-06 0.56073 1 3.8829e-05 0.0336 0.010052 1 7.4867e-05 0.0644 1 1 0.028846 1 0.034196 1 Amp Peak 15(13q12.2) 366 (64%) 209 0.10111 1 0.23912 1 0.0018789 1 0.54295 1 2.6062e-09 2.32e-06 0.53275 1 9.0321e-05 0.0774 0.023021 1 0.00018401 0.156 1 1 0.050982 1 0.035477 1 Amp Peak 16(13q22.1) 371 (65%) 204 0.045378 1 0.44433 1 0.024905 1 0.22148 1 3.1267e-08 2.78e-05 0.73574 1 0.00012707 0.108 0.023953 1 0.0006004 0.504 0.50268 1 0.16199 1 0.18528 1 Amp Peak 17(15q26.1) 43 (7%) 532 0.082353 1 0.75334 1 0.29134 1 0.058196 1 0.43269 1 0.28691 1 0.0040914 1 0.64853 1 0.19845 1 0.14067 1 0.37952 1 0.056244 1 Amp Peak 18(16p11.2) 161 (28%) 414 0.83768 1 0.25968 1 0.91761 1 0.7099 1 0.0024039 1 0.72051 1 5.8232e-05 0.0502 0.11148 1 8.5431e-05 0.0733 0.71528 1 0.39383 1 0.017531 1 Amp Peak 19(17q12) 144 (25%) 431 0.48939 1 0.36274 1 0.591 1 0.10083 1 0.45692 1 0.41736 1 0.15175 1 0.011706 1 0.01578 1 0.46209 1 0.031085 1 0.34531 1 Amp Peak 20(17q24.1) 128 (22%) 447 0.043133 1 0.24469 1 0.91078 1 0.61665 1 0.087816 1 0.77134 1 0.88572 1 0.054923 1 0.21872 1 0.69148 1 0.094091 1 0.68887 1 Amp Peak 21(19p13.2) 97 (17%) 478 0.14445 1 0.49273 1 0.21612 1 0.1825 1 0.051642 1 0.40855 1 0.033911 1 0.23308 1 0.12554 1 1 1 0.18363 1 0.97158 1 Amp Peak 22(19q12) 122 (21%) 453 0.62777 1 0.94086 1 0.25648 1 0.18475 1 0.029345 1 0.65438 1 0.094334 1 0.13854 1 0.22615 1 0.69223 1 0.59211 1 0.41875 1 Amp Peak 23(20p11.23) 301 (52%) 274 0.69942 1 0.92117 1 0.019432 1 0.036417 1 0.00072028 0.601 0.87262 1 0.036751 1 0.0013384 1 0.011024 1 0.18062 1 0.38319 1 0.30527 1 Amp Peak 24(20p11.21) 339 (59%) 236 0.80816 1 0.70939 1 0.0078392 1 0.041282 1 1.1233e-05 0.00984 0.88495 1 0.38239 1 0.0031225 1 0.051611 1 0.3203 1 0.69612 1 0.93012 1 Amp Peak 25(20q11.21) 439 (76%) 136 0.31708 1 0.82317 1 9.1269e-06 0.008 0.37611 1 7.8794e-12 7.05e-09 0.50554 1 0.0014106 1 0.0053263 1 0.00010719 0.0916 0.69319 1 0.058847 1 0.34439 1 Amp Peak 26(20q12) 441 (77%) 134 0.2741 1 0.72637 1 4.7389e-06 0.00416 0.37389 1 5.3797e-13 4.82e-10 0.61058 1 0.0010145 0.84 0.0012878 1 4.1717e-05 0.036 0.69249 1 0.058961 1 0.39299 1 Amp Peak 27(20q13.32) 444 (77%) 131 0.36888 1 0.65814 1 2.1798e-05 0.019 0.55065 1 8.7602e-12 7.83e-09 0.58772 1 0.0015816 1 0.0042425 1 0.00013133 0.112 0.69177 1 0.058857 1 0.24632 1 Amp Peak 28(Xq28) 121 (21%) 454 0.24457 1 0.20889 1 0.42107 1 0.83791 1 0.024888 1 0.52062 1 0.017017 1 0.21908 1 0.063487 1 0.69254 1 0.29044 1 0.286 1 Del Peak 1(1p36.11) 222 (39%) 353 0.050974 1 0.10465 1 0.12589 1 0.39173 1 0.0064375 1 0.23818 1 0.00088703 0.737 0.00061485 0.516 0.0007338 0.611 0.73947 1 0.058503 1 0.00059434 0.5 Del Peak 2(1p33) 156 (27%) 419 0.017837 1 0.83622 1 0.40103 1 0.85089 1 0.079693 1 0.22615 1 0.0050688 1 0.010612 1 0.015867 1 0.70913 1 0.13816 1 0.015356 1 Del Peak 3(1p13.2) 157 (27%) 418 0.069603 1 0.84088 1 0.24819 1 0.63907 1 0.13508 1 0.15045 1 0.0021289 1 0.0012697 1 0.01621 1 0.26519 1 0.20496 1 0.0029676 1 Del Peak 4(2p12) 20 (3%) 555 0.79585 1 0.17875 1 0.0034646 1 0.82134 1 0.020796 1 1 1 0.35136 1 0.55993 1 0.32931 1 0.2745 1 0.87592 1 0.31773 1 Del Peak 5(2q22.1) 33 (6%) 542 0.84952 1 0.56386 1 0.84151 1 0.4738 1 0.92732 1 0.66912 1 0.60904 1 0.6892 1 0.17383 1 1 1 1 1 0.89421 1 Del Peak 6(2q37.2) 30 (5%) 545 0.84229 1 0.13904 1 0.83467 1 0.45768 1 0.94529 1 0.34356 1 0.20756 1 0.13323 1 0.044884 1 1 1 1 1 0.85877 1 Del Peak 7(3p26.3) 84 (15%) 491 0.00064315 0.538 0.85516 1 0.69074 1 0.72267 1 0.19031 1 0.037336 1 0.019192 1 0.0010488 0.865 0.00068373 0.571 0.13106 1 0.067422 1 0.029607 1 Del Peak 8(3p14.2) 104 (18%) 471 0.2157 1 0.57757 1 0.8078 1 0.66447 1 0.41626 1 0.13626 1 0.18111 1 0.031733 1 0.046144 1 0.66902 1 0.1227 1 0.023622 1 Del Peak 9(3q26.31) 56 (10%) 519 0.71374 1 0.99574 1 0.87444 1 0.093076 1 0.042289 1 0.013942 1 0.37139 1 0.32673 1 0.002149 1 0.21553 1 0.11122 1 0.50357 1 Del Peak 10(4p16.1) 182 (32%) 393 0.040554 1 0.9543 1 0.056075 1 0.12784 1 0.027666 1 0.98505 1 0.0005699 0.48 0.013053 1 0.0016393 1 2.7777e-05 0.0242 0.082087 1 0.0016018 1 Del Peak 11(4q22.1) 198 (34%) 377 0.19253 1 0.41962 1 0.004171 1 0.18684 1 0.0014193 1 0.13372 1 0.0018022 1 0.36899 1 0.037511 1 0.0011368 0.937 0.42642 1 0.0026407 1 Del Peak 12(4q35.1) 211 (37%) 364 0.27741 1 0.3025 1 0.032529 1 0.86274 1 0.020966 1 0.70175 1 0.0032546 1 0.64453 1 0.11816 1 0.0018523 1 0.78785 1 0.021775 1 Del Peak 13(5q11.2) 140 (24%) 435 0.16448 1 0.086616 1 0.038855 1 1 1 0.02749 1 0.97606 1 0.0077976 1 0.023238 1 0.034446 1 0.001029 0.851 0.27067 1 0.02264 1 Del Peak 14(5q22.2) 172 (30%) 403 0.086591 1 0.35869 1 0.15523 1 0.64817 1 0.06241 1 0.77315 1 0.016765 1 0.031063 1 0.033225 1 0.00038155 0.322 0.103 1 0.14549 1 Del Peak 15(6p25.3) 78 (14%) 497 0.61083 1 0.068329 1 1 1 0.087634 1 0.54374 1 0.26102 1 0.53367 1 0.32581 1 0.22258 1 0.35064 1 0.32398 1 0.74896 1 Del Peak 16(6q26) 90 (16%) 485 0.029047 1 0.90048 1 0.3677 1 0.30101 1 0.048495 1 0.058417 1 0.013603 1 0.038913 1 0.59418 1 0.63731 1 0.062479 1 0.0096105 1 Del Peak 17(7q31.1) 15 (3%) 560 0.9996 1 0.32888 1 1 1 0.30678 1 0.5033 1 0.52475 1 0.67329 1 0.33028 1 0.34234 1 1 1 0.70645 1 0.6101 1 Del Peak 18(8p23.2) 272 (47%) 303 0.61936 1 0.20492 1 2.4001e-05 0.0209 0.18048 1 2.8952e-05 0.0252 0.081012 1 2.7797e-05 0.0242 0.0098922 1 3.3993e-05 0.0294 0.015478 1 0.0053618 1 0.00042188 0.356 Del Peak 19(8p22) 285 (50%) 290 0.59729 1 0.31673 1 0.00037949 0.321 0.40322 1 0.00025621 0.217 0.075274 1 1.9671e-06 0.00173 0.0038054 1 1.2423e-06 0.0011 0.019623 1 0.0079705 1 0.00010598 0.0907 Del Peak 20(8p11.21) 124 (22%) 451 0.59764 1 0.32897 1 0.030984 1 0.54204 1 0.16707 1 0.53468 1 0.0072346 1 0.082294 1 0.027033 1 0.41363 1 0.088468 1 0.08883 1 Del Peak 21(8q11.1) 44 (8%) 531 0.88914 1 0.38174 1 0.1598 1 0.20804 1 0.41784 1 0.71383 1 0.027414 1 0.0020192 1 0.096241 1 0.51408 1 0.41783 1 0.30188 1 Del Peak 22(9p24.2) 78 (14%) 497 0.0020651 1 0.12017 1 0.4958 1 0.050737 1 0.45218 1 0.49654 1 0.13629 1 0.023124 1 0.29115 1 0.35064 1 0.039628 1 0.23672 1 Del Peak 23(10p15.3) 102 (18%) 473 0.57717 1 0.028184 1 0.27059 1 0.91313 1 0.36432 1 0.72086 1 0.0071282 1 0.18102 1 0.0084727 1 0.0014492 1 1 1 0.046471 1 Del Peak 24(10q21.1) 118 (21%) 457 0.86925 1 0.015249 1 0.42095 1 0.53528 1 0.11799 1 0.72339 1 0.1636 1 0.68231 1 0.36798 1 0.0032571 1 0.16662 1 0.17019 1 Del Peak 25(10q23.31) 145 (25%) 430 0.56604 1 0.0066844 1 0.040834 1 0.92346 1 0.020788 1 0.20628 1 0.013874 1 0.062131 1 0.09767 1 0.0012972 1 0.43075 1 0.20053 1 Del Peak 26(10q25.2) 140 (24%) 435 0.75577 1 0.071526 1 0.12773 1 0.84627 1 0.032419 1 0.21828 1 0.013448 1 0.42996 1 0.11609 1 0.001029 0.851 0.39622 1 0.1719 1 Del Peak 27(11q22.3) 104 (18%) 471 0.47266 1 0.39624 1 0.08601 1 0.58785 1 0.053159 1 0.38956 1 0.051445 1 0.63315 1 0.092659 1 0.06099 1 0.62972 1 0.042183 1 Del Peak 28(12p13.1) 77 (13%) 498 0.46601 1 0.47229 1 0.025634 1 0.32687 1 0.00067708 0.566 0.50127 1 0.031894 1 0.10029 1 0.20808 1 0.34447 1 0.55742 1 0.9567 1 Del Peak 29(12q21.2) 80 (14%) 495 0.63647 1 0.7092 1 0.077939 1 0.71734 1 0.0083718 1 0.67452 1 0.018532 1 0.091642 1 0.23874 1 0.11688 1 1 1 0.077285 1 Del Peak 30(14q22.1) 185 (32%) 390 0.20761 1 0.23312 1 0.021177 1 0.42065 1 1.1454e-06 0.00101 0.77962 1 0.0036175 1 0.1452 1 0.17461 1 0.72544 1 0.53865 1 0.69112 1 Del Peak 31(15q11.2) 233 (41%) 342 0.77119 1 0.61767 1 0.21589 1 0.49633 1 0.0549 1 0.80448 1 0.014838 1 0.26419 1 0.04143 1 0.03501 1 0.67993 1 0.06164 1 Del Peak 32(15q21.1) 227 (39%) 348 0.43429 1 0.60321 1 0.035475 1 0.30476 1 0.024655 1 0.84637 1 0.027079 1 0.22806 1 0.12451 1 0.032746 1 0.70418 1 0.05118 1 Del Peak 33(15q22.33) 217 (38%) 358 0.55467 1 0.32702 1 0.012045 1 0.66661 1 0.0059487 1 0.096825 1 0.0067931 1 0.21068 1 0.023491 1 0.0022947 1 0.83205 1 0.028711 1 Del Peak 34(16p13.3) 58 (10%) 517 4.3442e-05 0.0375 0.2537 1 0.35861 1 0.88975 1 0.41803 1 0.06889 1 0.13193 1 0.38099 1 0.10111 1 0.60891 1 0.74858 1 0.060641 1 Del Peak 35(16q23.1) 72 (13%) 503 0.001396 1 0.26369 1 0.40188 1 0.16672 1 0.51524 1 0.25207 1 0.77511 1 0.95086 1 0.46543 1 1 1 0.92588 1 0.2387 1 Del Peak 36(17p12) 343 (60%) 232 0.65566 1 0.09827 1 0.0016883 1 0.60942 1 6.4776e-08 5.75e-05 0.4192 1 0.00012138 0.104 0.041047 1 3.1475e-05 0.0273 0.32482 1 0.11903 1 0.0022335 1 Del Peak 37(17q24.3) 84 (15%) 491 0.73107 1 0.30528 1 0.79264 1 0.099365 1 0.98964 1 0.24291 1 0.0074972 1 0.35198 1 0.035667 1 0.62624 1 0.32365 1 0.045489 1 Del Peak 38(18p11.31) 341 (59%) 234 0.97976 1 0.058985 1 1.8223e-06 0.00161 1 1 1.527e-16 1.37e-13 0.88217 1 0.010631 1 0.00058436 0.492 0.00089511 0.743 0.32245 1 0.024009 1 0.45656 1 Del Peak 39(18q12.2) 386 (67%) 189 0.94163 1 0.081686 1 1.5712e-09 1.4e-06 0.47693 1 8.5883e-18 7.73e-15 0.42083 1 0.0001311 0.112 0.0044695 1 6.8216e-05 0.0587 0.034018 1 0.037271 1 0.0084705 1 Del Peak 40(18q21.2) 403 (70%) 172 0.48062 1 0.082278 1 1.0696e-09 9.55e-07 0.14479 1 3.6976e-16 3.32e-13 0.31488 1 1.9455e-06 0.00172 0.0016234 1 4.1e-07 0.000363 0.063709 1 0.043835 1 0.00097776 0.811 Del Peak 41(18q22.1) 398 (69%) 177 0.33246 1 0.22143 1 1.9413e-07 0.000172 0.23921 1 2.0695e-15 1.86e-12 0.44399 1 1.1427e-05 0.01 0.002379 1 4.6799e-06 0.00411 0.063183 1 0.082412 1 0.0018163 1 Del Peak 42(19p13.3) 92 (16%) 483 0.40618 1 0.18275 1 0.03049 1 0.73301 1 0.067785 1 0.40734 1 7.6401e-05 0.0656 0.027495 1 0.0031204 1 0.6414 1 0.13009 1 0.0024972 1 Del Peak 43(19q13.43) 68 (12%) 507 0.50937 1 0.81573 1 0.14616 1 0.30032 1 0.41681 1 0.43953 1 0.01563 1 0.071202 1 0.16961 1 0.2888 1 0.78266 1 0.019714 1 Del Peak 44(20p12.1) 179 (31%) 396 0.10848 1 0.63099 1 0.044484 1 0.32068 1 0.1438 1 0.46831 1 0.31946 1 0.82661 1 0.1914 1 0.063204 1 0.40495 1 0.82869 1 Del Peak 45(20p12.1) 179 (31%) 396 0.10848 1 0.63099 1 0.044484 1 0.32068 1 0.1438 1 0.46831 1 0.31946 1 0.82661 1 0.1914 1 0.063204 1 0.40495 1 0.82869 1 Del Peak 46(21q11.2) 195 (34%) 380 0.51534 1 0.7214 1 0.0055452 1 0.65992 1 0.00063164 0.529 0.82383 1 0.045775 1 0.61421 1 0.32531 1 0.17539 1 0.43252 1 0.0041086 1 Del Peak 47(22q13.32) 204 (35%) 371 0.040046 1 0.67219 1 0.17266 1 0.93046 1 0.0096136 1 0.44953 1 0.00079069 0.658 0.027507 1 0.0093788 1 0.72731 1 0.29264 1 0.012207 1