Clinical Features Time to Death AGE PRIMARY.SITE.OF.DISEASE GENDER HISTOLOGICAL.TYPE PATHOLOGY.T PATHOLOGY.N PATHOLOGICSPREAD(M) TUMOR.STAGE RADIATIONS.RADIATION.REGIMENINDICATION COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q 1p gain 15 (3%) 560 0.85004 1 0.65828 1 1 1 0.61039 1 0.5033 1 0.90343 1 0.043859 1 0.81345 1 0.57783 1 1 1 1 1 0.24506 1 1q gain 80 (14%) 495 0.65611 1 0.83822 1 0.17375 1 0.14833 1 0.0623 1 0.20196 1 0.17633 1 0.32951 1 0.030507 1 1 1 0.24152 1 0.042876 1 2p gain 60 (10%) 515 0.32807 1 0.9237 1 0.36079 1 0.17298 1 0.043661 1 0.66593 1 0.30017 1 0.97584 1 0.15525 1 1 1 0.18031 1 0.33208 1 2q gain 59 (10%) 516 0.38443 1 0.44765 1 0.16912 1 0.21723 1 0.031548 1 0.87071 1 0.36525 1 0.90023 1 0.16615 1 1 1 0.64735 1 0.15518 1 3p gain 36 (6%) 539 0.032405 1 0.30955 1 0.019392 1 0.30149 1 0.054466 1 0.91912 1 0.60803 1 0.0017246 1 0.41989 1 0.44351 1 0.73019 1 0.267 1 3q gain 53 (9%) 522 0.00021761 0.199 0.64443 1 0.0088086 1 0.14796 1 0.01544 1 0.95208 1 0.02962 1 0.00028256 0.258 0.025008 1 0.19769 1 0.50577 1 0.14806 1 4p gain 6 (1%) 569 0.42062 1 0.88477 1 0.053714 1 0.69066 1 0.19888 1 0.71789 1 0.32266 1 0.044615 1 0.1287 1 1 1 1 1 0.01542 1 4q gain 7 (1%) 568 0.98267 1 0.75818 1 0.4044 1 1 1 0.55685 1 0.58077 1 0.113 1 0.17933 1 0.10052 1 1 1 0.13821 1 0.29243 1 5p gain 60 (10%) 515 0.95332 1 0.35566 1 0.36079 1 1 1 0.24189 1 0.90374 1 0.2134 1 0.77749 1 0.518 1 0.23969 1 0.21568 1 0.86053 1 5q gain 33 (6%) 542 0.90322 1 0.86728 1 0.3162 1 0.59237 1 0.32728 1 0.81698 1 0.21905 1 0.41614 1 0.25367 1 1 1 0.27803 1 0.13524 1 6p gain 77 (13%) 498 0.62447 1 0.47991 1 0.076934 1 1 1 0.056779 1 0.62802 1 0.0030128 1 0.75224 1 0.053646 1 0.10671 1 0.25229 1 0.13742 1 6q gain 71 (12%) 504 0.8748 1 0.87444 1 0.086624 1 0.89897 1 0.079517 1 0.89183 1 0.0086418 1 0.63069 1 0.029408 1 0.30736 1 0.19184 1 0.16082 1 7p gain 290 (50%) 285 0.15745 1 0.63066 1 0.11255 1 1 1 1.7593e-05 0.0162 0.92265 1 0.00037843 0.344 0.047158 1 1.1151e-05 0.0103 0.50451 1 0.13636 1 0.022935 1 7q gain 255 (44%) 320 0.21558 1 0.61507 1 0.15997 1 0.86637 1 0.00011215 0.103 0.89826 1 0.0097155 1 0.021331 1 5.2982e-05 0.0486 0.51923 1 0.09979 1 0.13406 1 8p gain 108 (19%) 467 0.64047 1 0.51599 1 0.55123 1 0.83109 1 0.94521 1 0.46767 1 0.31606 1 0.83215 1 0.87245 1 1 1 0.078472 1 0.13102 1 8q gain 235 (41%) 340 0.23152 1 0.12534 1 0.39471 1 0.39608 1 0.04104 1 0.20709 1 0.25305 1 0.28972 1 0.3705 1 0.74392 1 0.0054741 1 0.61545 1 9p gain 79 (14%) 496 0.2389 1 0.33941 1 0.001776 1 0.71672 1 0.010705 1 0.86971 1 0.31105 1 0.67397 1 0.30567 1 0.61859 1 0.56279 1 0.39489 1 9q gain 64 (11%) 511 0.10565 1 0.19708 1 0.038591 1 0.23277 1 0.19367 1 0.37898 1 0.32127 1 0.70005 1 0.2053 1 0.60718 1 0.63947 1 0.76261 1 10p gain 28 (5%) 547 0.042122 1 0.16455 1 1 1 0.25165 1 0.76776 1 0.10326 1 0.0054918 1 0.13987 1 0.19085 1 1 1 0.225 1 0.18679 1 10q gain 13 (2%) 562 0.43051 1 0.0097968 1 0.76178 1 0.39991 1 0.60326 1 0.29183 1 0.030918 1 0.49363 1 0.13704 1 1 1 0.64266 1 0.16892 1 11p gain 39 (7%) 536 0.45792 1 0.030978 1 0.00060653 0.55 0.18678 1 0.00032668 0.298 0.099338 1 0.37723 1 0.47925 1 0.32673 1 1 1 0.41812 1 0.21951 1 11q gain 39 (7%) 536 0.41419 1 0.0027396 1 0.027159 1 1 1 0.012538 1 0.1907 1 0.47843 1 0.75072 1 0.094603 1 1 1 0.14694 1 0.52406 1 12p gain 93 (16%) 482 0.65942 1 0.018908 1 0.80083 1 0.90971 1 0.95083 1 0.52785 1 0.0098522 1 0.40941 1 0.080993 1 0.6435 1 0.81213 1 0.87386 1 12q gain 78 (14%) 497 0.83366 1 0.0042662 1 0.34382 1 0.39338 1 0.72885 1 0.67631 1 0.040896 1 0.44298 1 0.036002 1 0.61725 1 0.68677 1 0.034787 1 13q gain 314 (55%) 261 0.28979 1 0.87421 1 0.019184 1 0.45004 1 3.9379e-09 3.67e-06 0.78782 1 0.0012329 1 0.18797 1 0.0025779 1 0.52116 1 0.028027 1 0.87652 1 14q gain 19 (3%) 556 0.31262 1 0.9078 1 0.61026 1 1 1 0.75886 1 0.36598 1 0.46936 1 0.026644 1 0.44598 1 0.26256 1 0.71884 1 0.84891 1 15q gain 7 (1%) 568 0.90997 1 0.40532 1 1 1 0.70982 1 0.2076 1 0.87216 1 0.87461 1 0.71403 1 0.79731 1 1 1 1 1 0.59283 1 16p gain 96 (17%) 479 0.68895 1 0.34242 1 0.61772 1 1 1 0.02077 1 0.84211 1 0.0067141 1 0.37109 1 0.0040692 1 0.17756 1 0.61857 1 0.9895 1 16q gain 96 (17%) 479 0.85272 1 0.21498 1 0.454 1 1 1 0.017245 1 0.80934 1 0.00048357 0.439 0.31206 1 0.00040388 0.367 0.17756 1 0.92135 1 0.76352 1 17p gain 13 (2%) 562 0.16291 1 0.66904 1 0.53124 1 0.77985 1 0.5333 1 0.55041 1 0.86159 1 0.0017145 1 0.65021 1 1 1 1 1 0.51976 1 17q gain 67 (12%) 508 0.044314 1 0.51047 1 0.77179 1 0.29986 1 0.12139 1 0.87741 1 0.98337 1 0.016261 1 0.38737 1 1 1 0.71874 1 0.056841 1 18p gain 21 (4%) 554 0.69573 1 0.93123 1 1 1 1 1 0.07985 1 0.52785 1 0.003174 1 1.407e-05 0.013 0.71887 1 0.28627 1 0.71884 1 0.04345 1 18q gain 12 (2%) 563 0.63939 1 0.59607 1 1 1 0.39751 1 0.32015 1 0.10463 1 0.099598 1 0.82618 1 0.97605 1 0.174 1 1 1 0.2795 1 19p gain 52 (9%) 523 0.57482 1 0.37004 1 0.25871 1 0.88432 1 0.079799 1 0.93578 1 0.88214 1 0.72416 1 0.98528 1 1 1 0.48805 1 0.51225 1 19q gain 61 (11%) 514 0.27938 1 0.35074 1 0.36696 1 0.49893 1 0.36347 1 0.84791 1 0.98195 1 0.99183 1 0.88313 1 0.60752 1 0.53004 1 0.53964 1 20p gain 288 (50%) 287 0.34036 1 0.56403 1 0.0014642 1 0.02402 1 8.7859e-09 8.17e-06 0.35442 1 0.36622 1 0.017127 1 0.035033 1 1 1 0.017173 1 0.48282 1 20q gain 403 (70%) 172 0.43111 1 0.87954 1 4.3839e-05 0.0403 0.36223 1 1.9625e-15 1.83e-12 0.22073 1 0.040282 1 0.032833 1 0.0015225 1 0.73114 1 0.0086545 1 0.46892 1 21q gain 19 (3%) 556 0.26201 1 0.60661 1 0.29238 1 0.64407 1 0.66919 1 0.14563 1 0.14472 1 0.74096 1 0.2272 1 1 1 1 1 0.38224 1 22q gain 7 (1%) 568 0.48676 1 0.54204 1 0.020119 1 0.70982 1 0.071043 1 1 1 0.161 1 0.17933 1 0.035862 1 1 1 0.13821 1 0.37733 1 Xq gain 17 (3%) 558 0.050765 1 0.46947 1 0.58261 1 0.62822 1 0.72332 1 0.23179 1 0.15895 1 1.6688e-07 0.000155 0.13159 1 1 1 0.37457 1 0.20359 1 1p loss 68 (12%) 507 0.054034 1 0.93218 1 0.77387 1 0.52042 1 0.28135 1 0.71582 1 0.053265 1 0.18501 1 0.096218 1 1 1 0.44436 1 0.080391 1 1q loss 25 (4%) 550 0.71711 1 0.1788 1 0.65054 1 0.31217 1 0.8763 1 0.75752 1 0.16432 1 0.63087 1 0.3462 1 0.33165 1 0.28859 1 0.37246 1 2p loss 10 (2%) 565 0.3106 1 0.32446 1 0.15095 1 0.75807 1 0.24748 1 0.83621 1 0.74763 1 0.85452 1 0.96796 1 1 1 0.68955 1 0.60925 1 2q loss 8 (1%) 567 3.7841e-07 0.000351 0.80868 1 1 1 0.73026 1 0.86778 1 0.8932 1 0.88475 1 0.65809 1 0.33572 1 1 1 1 1 0.49931 1 3p loss 35 (6%) 540 3.1723e-05 0.0292 0.90882 1 0.33514 1 0.16272 1 0.036536 1 0.047172 1 0.069807 1 0.0036143 1 0.039107 1 0.43408 1 0.029673 1 0.15273 1 3q loss 17 (3%) 558 0.035479 1 0.12132 1 0.79052 1 0.081542 1 0.001828 1 0.59815 1 0.74621 1 0.16868 1 0.16363 1 0.23817 1 0.071364 1 0.58099 1 4p loss 122 (21%) 453 0.028026 1 0.28967 1 0.30367 1 0.47543 1 0.019836 1 0.80961 1 0.0097116 1 0.015092 1 0.0085686 1 0.10091 1 0.33616 1 0.0043212 1 4q loss 113 (20%) 462 0.41731 1 0.28845 1 0.008657 1 0.67399 1 0.0013248 1 0.74291 1 0.07633 1 0.51785 1 0.14864 1 0.079513 1 0.57879 1 0.021711 1 5p loss 34 (6%) 541 0.50767 1 0.66017 1 0.84455 1 0.48067 1 0.1769 1 0.80407 1 0.059939 1 0.97373 1 0.11393 1 0.094115 1 0.91449 1 0.068393 1 5q loss 60 (10%) 515 0.5333 1 0.65883 1 0.067172 1 0.89145 1 0.046009 1 0.46108 1 0.044953 1 0.76911 1 0.43923 1 0.0090768 1 0.46996 1 0.060772 1 6p loss 18 (3%) 557 0.4007 1 0.88913 1 1 1 0.81324 1 0.12611 1 1 1 0.56681 1 0.60539 1 0.72483 1 1 1 0.0034045 1 0.46828 1 6q loss 33 (6%) 542 0.067234 1 0.21141 1 0.54338 1 1 1 0.094256 1 0.68314 1 0.084193 1 0.0008809 0.796 0.47111 1 1 1 0.061171 1 0.047873 1 7q loss 3 (1%) 572 NA NA 0.19065 1 0.021298 1 0.59951 1 0.010619 1 0.67891 1 0.75675 1 0.92437 1 0.54955 1 1 1 1 1 1.4975e-24 1.4e-21 8p loss 145 (25%) 430 0.94784 1 0.99603 1 0.0068717 1 0.083054 1 0.0014814 1 0.8125 1 0.037344 1 0.19046 1 0.2694 1 0.049261 1 0.16167 1 0.0047818 1 8q loss 12 (2%) 563 0.76487 1 0.11738 1 1 1 0.15412 1 1 1 1 1 1 1 0.19985 1 0.070881 1 1 1 0.1138 1 0.8354 1 9p loss 39 (7%) 536 0.025344 1 0.27076 1 0.71191 1 1 1 0.74754 1 0.20367 1 0.75832 1 0.82995 1 0.48367 1 1 1 0.11019 1 0.40361 1 9q loss 37 (6%) 538 0.28685 1 0.0098135 1 1 1 0.39518 1 0.53013 1 0.11052 1 0.63385 1 0.92538 1 0.34281 1 1 1 0.11019 1 0.31473 1 10p loss 40 (7%) 535 0.56629 1 0.010539 1 0.04296 1 0.51146 1 0.011122 1 0.72197 1 0.3533 1 0.59483 1 0.18509 1 0.47986 1 0.59574 1 0.20429 1 10q loss 46 (8%) 529 0.34628 1 0.015143 1 0.003065 1 1 1 0.0026765 1 0.84067 1 0.7296 1 0.82894 1 0.53238 1 0.53043 1 0.59779 1 0.34715 1 11p loss 40 (7%) 535 0.37745 1 0.96909 1 0.0058854 1 0.74284 1 0.0012839 1 0.94038 1 0.21551 1 0.9616 1 0.04172 1 0.47986 1 0.37314 1 0.12008 1 11q loss 51 (9%) 524 0.74046 1 0.82125 1 0.0074532 1 0.37826 1 0.0023912 1 0.7019 1 0.15184 1 0.98089 1 0.46907 1 0.037697 1 0.45426 1 0.62634 1 12p loss 33 (6%) 542 0.070364 1 0.98571 1 0.3162 1 0.048133 1 0.11993 1 0.052598 1 0.018192 1 0.51143 1 0.19019 1 0.41479 1 0.79113 1 0.69225 1 12q loss 28 (5%) 547 0.10284 1 0.57814 1 1 1 0.25165 1 0.30296 1 0.25873 1 0.025945 1 0.28998 1 0.096024 1 1 1 0.54962 1 0.52241 1 13q loss 12 (2%) 563 0.8739 1 0.86418 1 0.32924 1 1 1 0.30416 1 0.39365 1 0.025063 1 0.42612 1 0.51125 1 1 1 0.51634 1 0.14866 1 14q loss 143 (25%) 432 0.38178 1 0.69638 1 0.065815 1 1 1 2.3358e-05 0.0215 0.50627 1 0.012453 1 0.2186 1 0.59724 1 1 1 0.64943 1 0.52381 1 15q loss 156 (27%) 419 0.53117 1 0.63959 1 0.011281 1 0.85089 1 0.00051617 0.468 0.39271 1 0.2886 1 0.36471 1 0.20758 1 0.26278 1 0.57916 1 0.056598 1 16p loss 15 (3%) 560 0.99285 1 0.54833 1 0.37943 1 0.1234 1 0.25958 1 0.95078 1 0.67329 1 0.98489 1 0.83195 1 1 1 0.64266 1 0.20112 1 16q loss 17 (3%) 558 0.45487 1 0.85191 1 0.0099885 1 0.62822 1 0.022927 1 0.88482 1 0.17896 1 0.97222 1 0.65191 1 0.23817 1 0.67839 1 0.3857 1 17p loss 252 (44%) 323 0.42942 1 0.58738 1 0.0018977 1 0.61439 1 5.6909e-07 0.000527 0.64789 1 0.043635 1 0.0008795 0.796 0.019617 1 0.18983 1 0.02766 1 0.019224 1 17q loss 45 (8%) 530 0.51956 1 0.85439 1 0.39011 1 0.87659 1 0.27825 1 0.6016 1 0.11209 1 0.92225 1 0.4591 1 0.1517 1 0.33794 1 0.72387 1 18p loss 324 (56%) 251 0.6074 1 0.35057 1 2.1212e-05 0.0196 0.93302 1 1.1754e-14 1.1e-11 0.67114 1 0.0013354 1 0.0087437 1 0.0014684 1 0.73806 1 0.090014 1 0.18829 1 18q loss 352 (61%) 223 0.42168 1 0.31973 1 1.8943e-07 0.000176 0.73148 1 3.748e-14 3.49e-11 0.23065 1 0.00036304 0.331 0.0027953 1 0.00024177 0.221 0.49353 1 0.019235 1 0.12036 1 19p loss 20 (3%) 555 0.75752 1 0.53798 1 0.45437 1 0.11101 1 0.51905 1 0.57677 1 0.77468 1 0.55954 1 0.61862 1 1 1 0.11428 1 0.45732 1 19q loss 18 (3%) 557 0.95668 1 0.16608 1 0.59805 1 0.23533 1 0.6981 1 0.62041 1 0.75971 1 0.4036 1 0.94526 1 1 1 0.075118 1 0.77618 1 20p loss 47 (8%) 528 0.39032 1 0.81394 1 0.30361 1 0.76145 1 0.32704 1 0.41789 1 0.77723 1 0.73063 1 0.59647 1 1 1 0.34515 1 0.5993 1 21q loss 114 (20%) 461 0.34981 1 0.95631 1 0.0096655 1 0.40339 1 0.0099561 1 0.65078 1 0.07633 1 0.84293 1 0.21407 1 0.69483 1 0.93274 1 0.016128 1 22q loss 122 (21%) 453 0.14283 1 0.07123 1 0.17031 1 0.26189 1 0.00020437 0.187 0.57326 1 0.012967 1 0.24346 1 0.054256 1 0.10091 1 0.13262 1 0.29533 1 Xq loss 11 (2%) 564 0.38552 1 0.25072 1 0.15095 1 1 1 0.29118 1 0.74354 1 0.33678 1 0.40154 1 0.54871 1 1 1 0.21751 1 0.38399 1