Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(2q32.1)	23 (18%)	104	0.55	1	0.75	1	0.00086702	0.179	0.09742	1	0.94171	1	1	1	0.83172	1	0.43937	1
Amp Peak 2(3p14.1)	32 (25%)	95	1	1	0.53671	1	4.1886e-15	9.84e-13	0.029355	1	0.0027933	0.545	1.7896e-06	0.000404	0.0053356	1	0.00022767	0.0487
Amp Peak 3(3q26.31)	42 (33%)	85	0.30245	1	0.055944	1	1.3263e-10	3.06e-08	0.15522	1	0.031304	1	0.0011393	0.232	0.058818	1	0.0014944	0.302
Amp Peak 4(5q35.2)	19 (15%)	108	0.0625	1	0.14107	1	1.7967e-13	4.2e-11	0.026737	1	0.67759	1	0.05646	1	0.56565	1	0.045245	1
Amp Peak 5(6p12.3)	4 (3%)	123	NA	NA	NA	NA	0.06343	1	0.13651	1	0.11386	1	0.34956	1	0.16515	1	0.1857	1
Amp Peak 6(7q22.1)	71 (56%)	56	1	1	0.80769	1	9.6781e-07	0.00022	6.1516e-05	0.0135	0.0017198	0.344	0.00051467	0.109	0.013401	1	0.015724	1
Amp Peak 7(17q25.2)	87 (69%)	40	0.58462	1	1	1	0.001119	0.229	0.094912	1	0.27993	1	0.038824	1	0.82556	1	0.47722	1
Amp Peak 8(19p13.2)	14 (11%)	113	0.088462	1	0.61538	1	3.6475e-08	8.35e-06	0.13248	1	0.068314	1	0.7651	1	0.72175	1	0.68172	1
Amp Peak 9(19q13.11)	4 (3%)	123	NA	NA	NA	NA	0.92728	1	0.13651	1	0.20127	1	0.13	1	0.33103	1	0.47273	1
Del Peak  1(1p36.31)	27 (21%)	100	1	1	0.75	1	3.0932e-07	7.05e-05	0.0089957	1	0.072513	1	0.086115	1	0.41763	1	0.17243	1
Del Peak  2(2p11.2)	3 (2%)	124	NA	NA	NA	NA	0.6135	1	0.80001	1	NA	NA	NA	NA	0.027974	1	0.027313	1
Del Peak  3(2q37.3)	5 (4%)	122	1	1	NA	NA	0.95857	1	0.13911	1	0.68433	1	0.34956	1	0.70413	1	0.84031	1
Del Peak  4(3p22.1)	10 (8%)	117	0.4375	1	NA	NA	0.00043666	0.093	8.3975e-05	0.0182	0.020585	1	0.0041726	0.801	0.015887	1	0.1106	1
Del Peak  5(4q33)	16 (13%)	111	1	1	0.75	1	0.00073553	0.153	0.00016756	0.036	0.0021674	0.429	0.016181	1	0.44645	1	0.59811	1
Del Peak  6(5p15.2)	7 (6%)	120	NA	NA	NA	NA	0.0064206	1	0.036236	1	0.039455	1	0.017003	1	0.44692	1	0.44408	1
Del Peak  7(5q15)	10 (8%)	117	NA	NA	NA	NA	2.0738e-05	0.00462	0.052987	1	0.01289	1	0.050649	1	0.96011	1	0.31526	1
Del Peak  8(5q35.2)	9 (7%)	118	1	1	NA	NA	0.00016487	0.0356	0.0015654	0.315	0.00061566	0.129	0.0011561	0.235	0.39362	1	0.11989	1
Del Peak  9(6p12.3)	12 (9%)	115	1	1	NA	NA	6.3507e-05	0.0139	0.026295	1	0.69687	1	0.67547	1	0.41087	1	0.76996	1
Del Peak 10(6q22.31)	14 (11%)	113	1	1	NA	NA	0.0055541	1	0.021153	1	0.097644	1	0.17478	1	0.78723	1	0.33667	1
Del Peak 11(6q26)	15 (12%)	112	1	1	NA	NA	7.2331e-05	0.0158	0.0030322	0.588	0.3993	1	0.30323	1	0.91267	1	0.59749	1
Del Peak 12(9p21.3)	19 (15%)	108	1	1	0.75	1	0.00047584	0.101	1.1834e-05	0.00265	3.4017e-05	0.00752	0.0018215	0.362	0.034061	1	0.092164	1
Del Peak 13(10p15.3)	8 (6%)	119	NA	NA	NA	NA	0.060933	1	0.011094	1	0.43544	1	0.2325	1	0.29256	1	0.10636	1
Del Peak 14(11q22.3)	14 (11%)	113	1	1	NA	NA	0.0084777	1	0.0025679	0.506	0.077193	1	0.011421	1	0.90285	1	0.56775	1
Del Peak 16(14q11.2)	29 (23%)	98	0.59615	1	0.16667	1	1.8587e-10	4.27e-08	0.27631	1	0.093411	1	0.17671	1	0.83534	1	0.95329	1
Del Peak 17(14q23.3)	28 (22%)	99	1	1	0.38462	1	6.818e-13	1.58e-10	0.122	1	0.035121	1	0.029534	1	0.71891	1	0.88568	1
Del Peak 18(14q32.2)	28 (22%)	99	1	1	0.38462	1	6.4772e-13	1.51e-10	0.22958	1	0.077507	1	0.064804	1	0.71891	1	0.88568	1
Del Peak 19(15q14)	16 (13%)	111	1	1	NA	NA	0.0050611	0.967	0.0084924	1	0.11235	1	0.30061	1	0.2881	1	0.4383	1
Del Peak 20(19p13.3)	13 (10%)	114	0.4375	1	NA	NA	0.0072874	1	0.23138	1	0.43015	1	0.087115	1	0.80149	1	0.73064	1
Del Peak 21(19q13.2)	11 (9%)	116	NA	NA	NA	NA	0.17893	1	0.13599	1	0.73212	1	0.049279	1	0.41885	1	0.59461	1
Del Peak 22(19q13.42)	12 (9%)	115	NA	NA	NA	NA	0.18623	1	0.29973	1	0.73212	1	0.2325	1	0.47091	1	0.43839	1
Del Peak 23(22q12.2)	34 (27%)	93	0.55	1	0.75	1	0.00069367	0.145	0.00075568	0.156	0.5186	1	0.031387	1	0.065212	1	0.38425	1
Del Peak 24(Xq21.31)	18 (14%)	109	1	1	NA	NA	7.1716e-06	0.00161	0.0034081	0.658	0.0027815	0.545	0.035429	1	0.76834	1	0.80565	1
Del Peak 25(Xq28)	17 (13%)	110	1	1	NA	NA	2.9258e-05	0.0065	0.060811	1	0.043626	1	0.25271	1	0.71301	1	0.94117	1