Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(1p33)	7 (4%)	184	4.8597e-07	5.2e-05	0.009239	0.657	0.12442	1	0.6648	1	0.11105	1	0.23847	1
Amp Peak 2(1q43)	7 (4%)	184	0.0063038	0.466	0.00052728	0.0496	0.37343	1	0.42513	1	0.32347	1	0.17081	1
Amp Peak 3(11q23.3)	17 (9%)	174	4.8679e-33	5.7e-31	0.0011926	0.107	0.37347	1	0.78378	1	1	1	0.8468	1
Amp Peak 4(13q31.3)	7 (4%)	184	1.9608e-10	2.2e-08	0.009239	0.657	0.066765	1	0.096536	1	0.68231	1	0.20026	1
Amp Peak 5(20q11.21)	3 (2%)	188	0.0013537	0.119	0.1008	1	NA	NA	0.5502	1	NA	NA	NA	NA
Amp Peak 6(21q22.2)	14 (7%)	177	9.345e-32	1.08e-29	0.00094774	0.0862	0.0033604	0.265	0.337	1	0.010681	0.726	0.018472	1
Del Peak  2(3p13)	9 (5%)	182	0.0017946	0.152	0.038363	1	0.034901	1	0.71843	1	0.0025841	0.209	0.0020792	0.173
Del Peak  3(3q26.31)	3 (2%)	188	0.0035451	0.277	0.1008	1	0.78607	1	1	1	0.084147	1	0.09401	1
Del Peak  4(5q31.2)	18 (9%)	173	6.3189e-15	7.27e-13	5.3053e-07	5.62e-05	0.0052964	0.397	0.092271	1	0.0013129	0.117	0.00076357	0.0702
Del Peak  5(7p12.1)	16 (8%)	175	2.3961e-07	2.64e-05	1.0628e-05	0.00108	0.0017898	0.152	0.0027164	0.217	0.0045987	0.349	0.003698	0.285
Del Peak  6(7q32.3)	23 (12%)	168	8.7837e-07	9.22e-05	1.4365e-05	0.00145	0.038361	1	0.021985	1	0.00042236	0.0401	0.00029635	0.0284
Del Peak  7(7q34)	24 (13%)	167	2.8339e-06	0.000295	3.6139e-06	0.000372	0.022081	1	0.021247	1	9.9444e-05	0.00965	8.5574e-05	0.00839
Del Peak  9(9q21.32)	5 (3%)	186	0.63001	1	0.73087	1	0.17604	1	0.66376	1	0.13824	1	0.11462	1
Del Peak 10(12p13.2)	10 (5%)	181	8.2523e-13	9.33e-11	0.0021987	0.18	0.19716	1	0.16676	1	0.096248	1	0.024123	1
Del Peak 11(12q21.33)	3 (2%)	188	0.056989	1	0.52909	1	0.18603	1	0.55157	1	0.0091281	0.657	0.0084075	0.614
Del Peak 12(16q23.1)	9 (5%)	182	2.6066e-07	2.84e-05	0.012088	0.798	0.33199	1	1	1	0.052893	1	0.082186	1
Del Peak 13(17p13.2)	15 (8%)	176	1.6751e-14	1.91e-12	2.2698e-05	0.00225	0.011251	0.754	0.021068	1	0.047558	1	0.0017462	0.15
Del Peak 14(17q11.2)	13 (7%)	178	1.7212e-05	0.00172	0.0013786	0.12	0.15585	1	0.22244	1	0.15381	1	0.0093035	0.657
Del Peak 15(18p11.21)	9 (5%)	182	4.6285e-07	5e-05	0.00074205	0.069	0.38067	1	0.71843	1	0.14859	1	0.097383	1
Del Peak 16(20q13.13)	4 (2%)	187	9.7264e-10	1.08e-07	0.030245	1	0.78607	1	1	1	0.21291	1	0.22665	1