Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p22.3)	24 (25%)	73	0.068596	1	0.36267	1	0.21758	1	0.11182	1	0.32614	1	0.1111	1
Amp Peak  2(1q22)	72 (74%)	25	0.001258	0.385	0.00057148	0.177	0.13149	1	0.58143	1	0.44801	1	0.69561	1
Amp Peak  3(1q42.3)	65 (67%)	32	0.0035909	1	0.010267	1	0.042939	1	0.80185	1	0.49791	1	0.1919	1
Amp Peak  4(2p24.1)	22 (23%)	75	0.24437	1	0.38675	1	0.70159	1	0.25045	1	0.16794	1	0.024505	1
Amp Peak  5(2q33.1)	20 (21%)	77	0.26268	1	0.5758	1	0.49073	1	0.77087	1	0.7891	1	0.14087	1
Amp Peak  6(3q26.31)	20 (21%)	77	0.0056831	1	0.32796	1	0.12627	1	1	1	0.55709	1	0.12118	1
Amp Peak  7(4q31.3)	8 (8%)	89	0.52369	1	1	1	0.4648	1	0.12219	1	0.20042	1	0.40225	1
Amp Peak  8(5p15.33)	48 (49%)	49	0.0027782	0.842	0.52232	1	0.16535	1	0.093812	1	0.36665	1	0.64529	1
Amp Peak  9(5q35.3)	37 (38%)	60	0.031522	1	0.41593	1	0.35816	1	0.4431	1	0.92132	1	0.88946	1
Amp Peak 10(6p25.2)	42 (43%)	55	0.010176	1	0.003345	1	0.11773	1	0.093812	1	0.88967	1	0.54049	1
Amp Peak 11(6p21.1)	43 (44%)	54	0.00087049	0.268	7.4342e-05	0.0234	0.0062322	1	0.33188	1	0.49497	1	0.30549	1
Amp Peak 12(6q12)	32 (33%)	65	0.06508	1	0.028594	1	0.10074	1	1	1	0.084606	1	0.37227	1
Amp Peak 13(7q21.2)	36 (37%)	61	0.25328	1	0.04378	1	0.3972	1	0.20034	1	0.49278	1	0.23302	1
Amp Peak 14(8q13.1)	49 (51%)	48	4.2154e-09	1.34e-06	0.9306	1	0.14924	1	1	1	0.63089	1	0.43639	1
Amp Peak 15(8q24.13)	60 (62%)	37	1.7988e-07	5.7e-05	0.73728	1	0.1779	1	0.62262	1	0.72513	1	0.78943	1
Amp Peak 16(10p15.1)	19 (20%)	78	0.16845	1	0.25585	1	0.27326	1	0.016738	1	0.43431	1	0.23027	1
Amp Peak 17(11q13.3)	17 (18%)	80	0.39596	1	0.48601	1	0.15955	1	0.73189	1	0.085552	1	0.019191	1
Amp Peak 18(12q23.1)	19 (20%)	78	0.00044987	0.14	0.073736	1	0.66832	1	0.13141	1	0.52338	1	0.46865	1
Amp Peak 19(13q32.3)	22 (23%)	75	0.0011042	0.339	0.1282	1	0.37202	1	0.14353	1	0.42807	1	0.28268	1
Amp Peak 20(15q21.3)	15 (15%)	82	0.013005	1	0.36471	1	0.15258	1	0.54163	1	0.93346	1	0.3524	1
Amp Peak 21(15q26.3)	15 (15%)	82	0.035951	1	0.81028	1	0.60981	1	0.54163	1	0.69956	1	0.72287	1
Amp Peak 22(17p11.2)	15 (15%)	82	0.0031277	0.945	0.75527	1	0.25561	1	0.30174	1	0.87136	1	0.17543	1
Amp Peak 23(17q23.1)	40 (41%)	57	0.023037	1	0.51309	1	0.30077	1	0.22006	1	0.51159	1	0.68261	1
Amp Peak 24(17q25.3)	44 (45%)	53	0.00045276	0.141	0.095878	1	0.38845	1	0.81144	1	0.46173	1	0.867	1
Amp Peak 25(19q13.11)	31 (32%)	66	0.041073	1	0.28346	1	0.6859	1	0.30222	1	0.64559	1	0.50706	1
Amp Peak 26(20q13.13)	35 (36%)	62	0.041823	1	0.55619	1	0.0044898	1	0.46072	1	0.88467	1	0.22998	1
Del Peak  1(1p36.32)	45 (46%)	52	0.015868	1	0.014546	1	0.27624	1	0.63122	1	0.32273	1	0.089892	1
Del Peak  2(2q22.1)	10 (10%)	87	0.48907	1	0.39187	1	0.7513	1	0.69048	1	0.063368	1	0.020303	1
Del Peak  3(2q37.3)	16 (16%)	81	0.35718	1	0.56273	1	0.44193	1	0.75007	1	0.064958	1	0.0058368	1
Del Peak  4(3p13)	16 (16%)	81	0.11301	1	0.29187	1	0.0023805	0.724	0.00016288	0.051	0.011156	1	0.11872	1
Del Peak  5(4q24)	41 (42%)	56	8.4746e-05	0.0266	0.13108	1	0.41208	1	0.8094	1	0.21422	1	0.43459	1
Del Peak  6(4q35.1)	42 (43%)	55	0.0020459	0.624	0.046452	1	0.11559	1	0.33662	1	0.28507	1	0.32293	1
Del Peak  7(5q23.1)	14 (14%)	83	0.15623	1	0.22781	1	0.33543	1	0.15168	1	0.31877	1	0.54655	1
Del Peak  8(6q16.3)	36 (37%)	61	0.30398	1	0.70681	1	0.41894	1	0.12712	1	0.45446	1	0.32481	1
Del Peak  9(6q26)	39 (40%)	58	0.16536	1	0.71398	1	0.66898	1	0.12712	1	0.23159	1	0.14378	1
Del Peak 10(8p23.2)	60 (62%)	37	3.6009e-07	0.000114	0.46739	1	0.23431	1	0.46006	1	0.41004	1	0.090725	1
Del Peak 11(9p21.3)	39 (40%)	58	0.15452	1	0.77245	1	0.78091	1	0.33662	1	0.1224	1	0.53534	1
Del Peak 12(10p15.3)	8 (8%)	89	0.7313	1	0.89254	1	0.4204	1	0.63368	1	0.20042	1	0.63763	1
Del Peak 13(10q23.31)	31 (32%)	66	0.033748	1	0.63741	1	0.0054836	1	0.07223	1	0.33917	1	0.010563	1
Del Peak 14(10q24.33)	29 (30%)	68	0.050979	1	0.57684	1	0.0055962	1	0.064677	1	0.03782	1	0.023145	1
Del Peak 15(11q14.1)	18 (19%)	79	0.57631	1	0.75106	1	0.42921	1	0.55367	1	0.68182	1	0.88633	1
Del Peak 16(12p12.1)	23 (24%)	74	0.18407	1	0.86345	1	0.24752	1	0.17713	1	0.18633	1	0.16305	1
Del Peak 17(12q24.33)	16 (16%)	81	0.48413	1	1	1	0.59314	1	0.75007	1	0.13166	1	0.60542	1
Del Peak 18(13q14.2)	43 (44%)	54	0.0068238	1	0.14812	1	0.052765	1	0.053794	1	0.058182	1	0.32293	1
Del Peak 19(14q23.3)	36 (37%)	61	0.022044	1	0.29169	1	0.4006	1	0.048155	1	0.51868	1	0.084942	1
Del Peak 20(15q15.1)	18 (19%)	79	0.0037474	1	0.59134	1	0.36376	1	0.034058	1	0.82941	1	0.68816	1
Del Peak 21(16q23.1)	42 (43%)	55	0.00074979	0.232	0.0081919	1	0.011437	1	0.053794	1	0.22291	1	0.027501	1
Del Peak 22(17p12)	57 (59%)	40	0.092119	1	0.51528	1	0.1213	1	0.13903	1	0.012426	1	0.0067093	1
Del Peak 23(18q21.2)	18 (19%)	79	0.11758	1	0.12601	1	0.13165	1	1	1	0.63427	1	0.83941	1
Del Peak 24(19p13.3)	20 (21%)	77	0.051607	1	0.10112	1	0.50323	1	0.26652	1	0.074873	1	0.13151	1
Del Peak 25(22q12.1)	18 (19%)	79	0.031756	1	0.23946	1	0.12299	1	0.23524	1	1	1	0.88991	1
Del Peak 26(22q13.32)	24 (25%)	73	0.020642	1	0.38141	1	0.041456	1	1	1	0.81874	1	0.54177	1
Del Peak 27(Xq27.3)	14 (14%)	83	0.0077355	1	0.12631	1	0.21636	1	0.3359	1	0.44212	1	0.64534	1