Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	12 (6%)	175	0.014312	1	0.21443	1	0.14449	1	0.12356	1	0.044193	1	0.91872	1
Amp Peak  2(3q26.2)	27 (14%)	160	0.00029969	0.0722	0.079632	1	0.3046	1	0.49455	1	0.84118	1	0.3432	1
Amp Peak  3(7p15.3)	35 (19%)	152	3.4954e-06	0.000898	0.052078	1	0.0078537	1	0.013544	1	0.87008	1	0.55016	1
Amp Peak  4(7q34)	32 (17%)	155	0.00015848	0.0393	0.0044078	0.961	0.0017861	0.409	0.00096923	0.228	0.85039	1	0.89327	1
Amp Peak  5(8p11.22)	17 (9%)	170	1.4353e-05	0.00367	0.26278	1	0.050773	1	0.26818	1	0.58671	1	0.45411	1
Amp Peak  6(8q21.13)	46 (25%)	141	4.818e-10	1.31e-07	0.0042874	0.939	0.0013714	0.32	0.0078444	1	0.37234	1	0.31317	1
Amp Peak  7(11q13.2)	11 (6%)	176	0.00049453	0.118	0.30394	1	0.19262	1	0.35527	1	0.89547	1	0.58873	1
Amp Peak  8(12q24.32)	7 (4%)	180	0.0020729	0.471	0.2628	1	0.89399	1	0.18343	1	0.45573	1	0.86407	1
Amp Peak  9(14q21.1)	10 (5%)	177	0.033321	1	0.14543	1	0.0090479	1	0.51824	1	0.61487	1	0.087357	1
Amp Peak 10(20q13.33)	12 (6%)	175	0.0057462	1	0.0034397	0.771	0.011845	1	0.0095596	1	0.28955	1	0.13	1
Amp Peak 11(21q21.3)	7 (4%)	180	0.032325	1	0.20773	1	0.21799	1	0.2878	1	0.84449	1	0.18098	1
Amp Peak 12(Xp22.11)	5 (3%)	182	0.3632	1	1	1	0.73985	1	0.60613	1	0.20956	1	0.39552	1
Amp Peak 13(Xp22.11)	5 (3%)	182	0.72561	1	0.61273	1	1	1	0.73503	1	0.75508	1	0.32525	1
Amp Peak 14(Xp21.1)	4 (2%)	183	0.6796	1	0.38946	1	1	1	1	1	0.26584	1	0.66552	1
Amp Peak 15(Xq12)	4 (2%)	183	0.27765	1	0.18165	1	0.063709	1	0.020985	1	0.60337	1	0.39328	1
Amp Peak 16(Xq21.1)	7 (4%)	180	0.38966	1	0.20773	1	0.19947	1	0.23374	1	0.40645	1	0.77145	1
Amp Peak 17(Xq21.1)	5 (3%)	182	0.3632	1	0.0038534	0.852	0.52864	1	0.33157	1	0.86904	1	0.84504	1
Amp Peak 18(Xq21.31)	5 (3%)	182	0.1391	1	0.27529	1	0.3245	1	0.1381	1	0.70251	1	1	1
Amp Peak 19(Xq25)	4 (2%)	183	0.049746	1	0.22635	1	0.39144	1	0.17266	1	0.40376	1	0.13283	1
Amp Peak 20(Xq25)	6 (3%)	181	1	1	0.25217	1	0.11797	1	0.4998	1	0.19705	1	0.40481	1
Amp Peak 21(Xq27.1)	9 (5%)	178	0.0066631	1	0.3959	1	0.83459	1	0.83055	1	0.064807	1	0.023354	1
Del Peak  1(1p31.3)	22 (12%)	165	0.043939	1	0.000722	0.171	0.0016936	0.39	0.0045759	0.993	0.1874	1	0.15206	1
Del Peak  2(1p21.3)	16 (9%)	171	0.009446	1	0.64333	1	0.94463	1	1	1	0.10091	1	0.94166	1
Del Peak  3(1q23.1)	8 (4%)	179	0.09595	1	0.16038	1	0.1356	1	0.11069	1	0.057866	1	0.70709	1
Del Peak  4(1q42.13)	18 (10%)	169	0.44828	1	0.0060255	1	0.73036	1	0.80713	1	0.2696	1	0.79135	1
Del Peak  5(2q22.1)	22 (12%)	165	6.0071e-05	0.0151	0.0015	0.346	0.10959	1	0.033031	1	0.012144	1	0.0077223	1
Del Peak  6(3p13)	28 (15%)	159	0.66804	1	0.026131	1	0.29377	1	0.030178	1	0.19451	1	0.11673	1
Del Peak  7(3q29)	12 (6%)	175	0.76761	1	0.059418	1	0.069436	1	0.022892	1	0.57859	1	1	1
Del Peak  8(4q28.2)	17 (9%)	170	0.00021547	0.0526	0.00018949	0.0464	0.014889	1	0.09425	1	0.38077	1	0.066343	1
Del Peak  9(5q11.2)	30 (16%)	157	2.6312e-07	7e-05	0.00098005	0.229	0.090147	1	0.043301	1	0.26858	1	0.70132	1
Del Peak 10(5q21.1)	33 (18%)	154	9.4247e-12	2.59e-09	2.7711e-06	0.00072	0.0026924	0.608	0.0073726	1	0.29941	1	0.53755	1
Del Peak 11(6q15)	59 (32%)	128	2.585e-18	7.29e-16	8.9417e-12	2.47e-09	1.1317e-06	0.000298	3.9087e-05	0.00989	0.00027634	0.0669	0.82396	1
Del Peak 12(7q36.1)	9 (5%)	178	0.38223	1	0.75417	1	0.59632	1	0.48307	1	0.69027	1	0.56445	1
Del Peak 13(8p21.3)	108 (58%)	79	1.6813e-08	4.51e-06	2.8011e-06	0.000725	6.8297e-05	0.0171	0.00016443	0.0406	0.0018351	0.418	0.05619	1
Del Peak 14(8p11.21)	59 (32%)	128	0.012424	1	0.00023411	0.0569	0.00091333	0.216	0.016389	1	0.28107	1	0.20691	1
Del Peak 15(9p22.3)	15 (8%)	172	0.00059935	0.143	0.32645	1	0.21617	1	0.26793	1	0.64212	1	1	1
Del Peak 16(10q23.31)	65 (35%)	122	7.2733e-07	0.000193	3.0091e-06	0.000776	4.7234e-08	1.26e-05	1.0049e-06	0.000265	0.040829	1	0.047161	1
Del Peak 17(11q23.2)	23 (12%)	164	0.062878	1	0.22339	1	0.87703	1	0.91563	1	0.33789	1	0.3484	1
Del Peak 18(12p13.2)	39 (21%)	148	7.0959e-05	0.0177	0.0066929	1	0.56234	1	0.096324	1	0.052721	1	0.85631	1
Del Peak 19(13q14.13)	83 (44%)	104	0.00031975	0.0767	0.003481	0.776	0.0014688	0.341	0.0047778	1	0.30576	1	0.36346	1
Del Peak 20(16q24.1)	74 (40%)	113	3.3265e-10	9.08e-08	0.0036034	0.8	0.022765	1	0.015816	1	0.011748	1	0.012113	1
Del Peak 21(17p13.1)	46 (25%)	141	2.13e-09	5.73e-07	0.13082	1	0.028444	1	0.0041085	0.904	0.33563	1	0.052125	1
Del Peak 22(17q21.31)	36 (19%)	151	0.0069749	1	3.1444e-05	0.00799	2.6e-05	0.00663	5.5431e-05	0.014	0.48443	1	0.28939	1
Del Peak 23(18q22.1)	46 (25%)	141	7.8623e-10	2.12e-07	0.6208	1	0.19551	1	0.44884	1	0.053374	1	0.15228	1
Del Peak 24(18q23)	52 (28%)	135	7.3901e-14	2.08e-11	0.41123	1	0.065401	1	0.13646	1	0.10403	1	0.44729	1
Del Peak 25(21q22.2)	61 (33%)	126	1.944e-06	0.000507	7.9619e-14	2.23e-11	6.5932e-10	1.79e-07	1.9112e-12	5.29e-10	0.13836	1	0.0028446	0.64
Del Peak 26(21q22.3)	60 (32%)	127	1.7666e-06	0.000463	5.5628e-13	1.55e-10	9.2387e-11	2.53e-08	8.0499e-13	2.24e-10	0.056678	1	0.00016952	0.0417