Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p12)	73 (30%)	171	0.00038232	0.144	0.48473	1	0.37927	1	0.4039	1	0.10231	1	0.0412	1	0.65943	1	0.53858	1
Amp Peak  2(1q21.3)	123 (50%)	121	1.1449e-08	4.64e-06	0.1014	1	0.66228	1	0.30317	1	0.050704	1	0.21943	1	0.42405	1	0.52952	1
Amp Peak  3(1q44)	130 (53%)	114	1.7977e-08	7.26e-06	0.014458	1	0.9431	1	0.94952	1	0.17156	1	0.25226	1	0.15554	1	0.11937	1
Amp Peak  4(3p13)	64 (26%)	180	0.17741	1	0.45534	1	0.37625	1	0.12347	1	1	1	0.9797	1	0.80573	1	0.44601	1
Amp Peak  5(4q12)	46 (19%)	198	0.0011896	0.434	0.41695	1	0.2935	1	0.31317	1	0.70302	1	0.26574	1	0.070476	1	0.0081766	1
Amp Peak  6(5p15.33)	73 (30%)	171	0.0003331	0.126	0.36627	1	0.096079	1	0.60304	1	0.2691	1	0.13999	1	0.014013	1	0.088771	1
Amp Peak  7(5q35.3)	38 (16%)	206	2.5977e-05	0.0101	0.00052773	0.197	0.56422	1	0.34181	1	0.10808	1	0.027284	1	0.049027	1	0.019995	1
Amp Peak  8(6p25.1)	139 (57%)	105	1.6495e-10	6.73e-08	0.00069197	0.257	0.0079811	1	0.54198	1	0.14602	1	0.015468	1	0.00020092	0.0765	2.8122e-05	0.0109
Amp Peak  9(6q12)	56 (23%)	188	0.0028849	1	0.61388	1	0.58714	1	0.42721	1	0.048568	1	0.67913	1	0.26739	1	0.25634	1
Amp Peak 10(7p22.3)	131 (54%)	113	4.7056e-08	1.9e-05	0.43432	1	0.65003	1	0.92417	1	0.040456	1	0.041515	1	0.63575	1	0.50866	1
Amp Peak 11(7q34)	145 (59%)	99	8.1569e-09	3.31e-06	0.58038	1	0.24937	1	0.54551	1	0.12802	1	0.6719	1	0.58082	1	0.30998	1
Amp Peak 12(8q11.21)	101 (41%)	143	3.2779e-06	0.00129	0.0093102	1	0.68728	1	0.64482	1	0.038551	1	0.039501	1	0.41227	1	0.83234	1
Amp Peak 13(8q24.21)	118 (48%)	126	6.1209e-07	0.000245	0.007876	1	0.52927	1	0.8897	1	0.029772	1	0.11832	1	0.66661	1	0.26831	1
Amp Peak 14(9p24.1)	21 (9%)	223	0.80981	1	0.33656	1	0.71095	1	0.81546	1	0.562	1	0.95264	1	0.40091	1	0.83603	1
Amp Peak 15(11q13.3)	47 (19%)	197	0.18393	1	0.1403	1	0.73268	1	0.95615	1	0.73388	1	0.92557	1	0.32292	1	0.30153	1
Amp Peak 16(11q13.4)	44 (18%)	200	0.08069	1	0.056092	1	0.96816	1	0.96764	1	0.34367	1	0.43918	1	0.17096	1	0.15336	1
Amp Peak 17(12q14.1)	41 (17%)	203	0.018598	1	0.29783	1	0.62023	1	0.50836	1	0.2071	1	0.064597	1	0.79174	1	0.81436	1
Amp Peak 18(12q15)	39 (16%)	205	0.0099819	1	0.92659	1	0.40803	1	0.51993	1	0.77272	1	0.69514	1	0.85094	1	0.60626	1
Amp Peak 19(15q24.3)	81 (33%)	163	0.00010244	0.0392	0.65692	1	0.95508	1	0.65284	1	0.46288	1	0.75385	1	0.87087	1	0.74364	1
Amp Peak 20(17q25.3)	87 (36%)	157	6.9815e-05	0.0269	0.0036705	1	0.020398	1	0.14853	1	0.078678	1	0.16562	1	0.087132	1	0.030123	1
Amp Peak 21(19p13.2)	50 (20%)	194	0.0015253	0.552	0.19073	1	0.75768	1	0.33009	1	0.050402	1	0.04312	1	0.47778	1	0.050514	1
Amp Peak 22(20q13.2)	129 (53%)	115	5.3138e-06	0.00209	0.011086	1	0.75293	1	0.99257	1	0.0085652	1	0.041963	1	0.87306	1	0.62138	1
Amp Peak 23(22q13.2)	102 (42%)	142	0.0066928	1	0.065623	1	0.74548	1	0.78913	1	0.58397	1	0.50071	1	0.21305	1	0.48118	1
Amp Peak 24(Xq28)	42 (17%)	202	0.044472	1	0.011125	1	0.45496	1	0.71506	1	0.1188	1	0.054889	1	0.83371	1	0.33313	1
Del Peak  1(1p36.31)	59 (24%)	185	0.006485	1	0.0001063	0.0406	0.13388	1	0.41896	1	0.088322	1	0.00044633	0.167	0.24417	1	0.23964	1
Del Peak  2(1p22.1)	63 (26%)	181	0.034281	1	0.00033265	0.126	0.76003	1	0.30081	1	0.00061953	0.231	0.0044919	1	0.5909	1	0.9024	1
Del Peak  3(2q37.3)	63 (26%)	181	0.040084	1	0.077087	1	0.43321	1	0.24585	1	0.037843	1	4.174e-05	0.0161	0.043426	1	0.017401	1
Del Peak  4(3q23)	37 (15%)	207	0.12505	1	0.014276	1	0.8454	1	0.90276	1	0.51657	1	0.69089	1	0.70857	1	0.71024	1
Del Peak  5(4q22.1)	56 (23%)	188	0.02635	1	0.30399	1	0.64131	1	0.64755	1	0.0010386	0.384	9.5604e-05	0.0367	0.011439	1	0.00031621	0.12
Del Peak  6(4q34.3)	67 (27%)	177	0.019359	1	0.18474	1	0.65759	1	0.7692	1	0.031493	1	0.0009469	0.351	0.036546	1	0.0010378	0.384
Del Peak  7(5q11.2)	67 (27%)	177	0.41145	1	0.039162	1	0.046502	1	0.22734	1	0.42846	1	0.12332	1	0.7274	1	0.58164	1
Del Peak  8(5q31.3)	90 (37%)	154	0.22385	1	2.4089e-05	0.00942	0.12494	1	0.82331	1	0.78487	1	0.69892	1	0.53464	1	0.3616	1
Del Peak  9(6q26)	153 (63%)	91	9.3722e-06	0.00368	0.02683	1	0.36723	1	0.78222	1	0.0018646	0.669	0.22378	1	0.49236	1	0.89917	1
Del Peak 10(8p23.3)	61 (25%)	183	0.042081	1	0.052839	1	0.0091817	1	0.20958	1	0.13307	1	0.72594	1	0.17473	1	0.43208	1
Del Peak 11(9p23)	168 (69%)	76	2.5009e-06	0.00099	0.042161	1	0.84151	1	0.55497	1	0.0011624	0.425	0.0055677	1	0.48664	1	0.23323	1
Del Peak 12(9p21.3)	189 (77%)	55	4.5881e-09	1.87e-06	0.0014302	0.519	0.74887	1	0.12661	1	2.723e-05	0.0106	0.0011443	0.42	0.63133	1	0.56061	1
Del Peak 13(10p15.3)	133 (55%)	111	6.7265e-07	0.000268	0.012289	1	0.48052	1	0.78734	1	1.6567e-05	0.00649	0.0018051	0.65	0.14435	1	0.37383	1
Del Peak 14(10q23.31)	149 (61%)	95	5.8937e-08	2.37e-05	0.072089	1	0.21405	1	0.73182	1	0.00024631	0.0936	0.0059376	1	0.51449	1	0.60666	1
Del Peak 15(10q26.3)	151 (62%)	93	4.5887e-07	0.000184	0.34847	1	0.40015	1	0.82999	1	2.8992e-05	0.0112	0.0013163	0.479	0.4087	1	0.84527	1
Del Peak 16(11q23.3)	134 (55%)	110	2.0516e-06	0.000814	0.098895	1	0.22742	1	0.46408	1	0.29244	1	0.15764	1	0.24942	1	0.060807	1
Del Peak 17(12p13.31)	37 (15%)	207	0.59147	1	0.19373	1	0.36295	1	0.78696	1	0.19831	1	1	1	0.40257	1	0.92634	1
Del Peak 18(12q23.3)	58 (24%)	186	0.1203	1	0.0087612	1	0.58942	1	0.49224	1	0.80651	1	0.44558	1	0.93832	1	0.54058	1
Del Peak 19(12q24.33)	57 (23%)	187	0.06965	1	0.012818	1	0.58089	1	0.54135	1	0.68596	1	0.40513	1	0.8812	1	0.44236	1
Del Peak 20(13q34)	58 (24%)	186	0.094137	1	0.0048333	1	0.077994	1	0.78531	1	0.50176	1	0.45531	1	0.44583	1	0.085418	1
Del Peak 21(14q32.2)	83 (34%)	161	1.7513e-06	0.000697	0.5659	1	0.16205	1	0.41927	1	0.019957	1	0.4369	1	0.58109	1	0.59765	1
Del Peak 22(15q13.3)	54 (22%)	190	0.0015329	0.553	0.18419	1	0.39265	1	0.6563	1	0.45124	1	0.057561	1	0.45068	1	0.38138	1
Del Peak 23(15q15.3)	56 (23%)	188	0.0011266	0.415	0.2141	1	0.38185	1	0.50063	1	0.82233	1	0.11049	1	0.32907	1	0.077358	1
Del Peak 24(16p13.3)	46 (19%)	198	0.71811	1	0.027968	1	0.19945	1	0.40752	1	0.3189	1	0.28968	1	0.093187	1	0.85343	1
Del Peak 25(16q12.1)	81 (33%)	163	0.21729	1	0.34619	1	0.015096	1	0.54677	1	0.26943	1	0.85666	1	0.10722	1	0.15049	1
Del Peak 26(16q24.3)	89 (36%)	155	0.26924	1	0.48192	1	0.33124	1	0.82795	1	0.036731	1	0.26029	1	0.024313	1	0.067146	1
Del Peak 27(19p13.3)	71 (29%)	173	0.038979	1	0.47132	1	0.0060741	1	0.021335	1	0.0018718	0.67	0.08329	1	0.52448	1	0.49283	1