Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p36.22)	34 (11%)	272	5.2142e-09	2.06e-06	0.0063589	1	0.41206	1	0.55652	1	0.042094	1	0.1814	1
Amp Peak  2(1q21.3)	101 (33%)	205	3.9045e-22	1.73e-19	4.8734e-11	1.98e-08	0.21515	1	0.020274	1	0.00079959	0.253	0.0016418	0.509
Amp Peak  3(1q42.3)	95 (31%)	211	5.9977e-18	2.59e-15	1.6759e-06	0.000623	0.75462	1	0.36101	1	9.6899e-05	0.0331	0.005871	1
Amp Peak  4(3q26.2)	91 (30%)	215	6.1852e-08	2.39e-05	0.0076278	1	0.11591	1	0.1419	1	0.068501	1	0.37782	1
Amp Peak  5(5p15.33)	76 (25%)	230	3.5652e-19	1.56e-16	1.7953e-07	6.84e-05	0.50979	1	0.47597	1	0.0082399	1	0.00078494	0.25
Amp Peak  6(5p13.1)	74 (24%)	232	1.0254e-18	4.47e-16	9.226e-06	0.00337	1	1	0.56103	1	0.031573	1	0.0052468	1
Amp Peak  7(6p21.1)	74 (24%)	232	2.5448e-17	1.09e-14	4.4541e-07	0.000168	0.33189	1	0.67761	1	0.036828	1	0.0011524	0.362
Amp Peak  8(6q12)	56 (18%)	250	2.1831e-10	8.73e-08	1.7747e-05	0.00642	0.50979	1	0.89859	1	0.066925	1	0.017928	1
Amp Peak  9(6q21)	52 (17%)	254	5.5919e-09	2.2e-06	0.00029544	0.0972	0.088339	1	0.36331	1	0.24074	1	0.02164	1
Amp Peak 10(7p22.3)	141 (46%)	165	1.6341e-22	7.24e-20	5.9058e-06	0.00217	0.76255	1	0.42816	1	0.0081093	1	0.0020788	0.634
Amp Peak 11(7p11.2)	128 (42%)	178	4.1535e-20	1.83e-17	0.00040173	0.131	0.54669	1	0.65082	1	0.0043733	1	0.020756	1
Amp Peak 12(7q21.2)	124 (41%)	182	3.2378e-18	1.41e-15	0.0064857	1	0.54669	1	0.43311	1	0.022891	1	0.072933	1
Amp Peak 13(8p23.1)	114 (37%)	192	6.1786e-05	0.0216	0.12044	1	0.36404	1	0.16522	1	0.55777	1	0.62345	1
Amp Peak 14(8q24.21)	186 (61%)	120	5.8189e-09	2.28e-06	0.00049697	0.161	0.28058	1	0.46435	1	0.083808	1	0.020196	1
Amp Peak 15(9p24.1)	45 (15%)	261	0.075184	1	0.10668	1	0.69808	1	0.15927	1	0.70147	1	0.35278	1
Amp Peak 16(9q34.3)	67 (22%)	239	1.3488e-07	5.15e-05	0.060869	1	0.74699	1	1	1	0.39448	1	0.3133	1
Amp Peak 17(10q26.13)	55 (18%)	251	2.4216e-05	0.00867	0.01485	1	1	1	1	1	0.44665	1	0.26962	1
Amp Peak 18(11p13)	48 (16%)	258	0.00070474	0.226	0.26518	1	0.69808	1	0.29321	1	0.22113	1	0.070048	1
Amp Peak 19(11q13.3)	62 (20%)	244	5.1152e-08	1.98e-05	0.089885	1	1	1	0.26386	1	0.010746	1	0.050021	1
Amp Peak 20(12p12.1)	76 (25%)	230	1.2406e-06	0.000464	0.0054721	1	0.41206	1	0.55652	1	0.16	1	0.79878	1
Amp Peak 21(12q15)	69 (23%)	237	3.0258e-05	0.0108	0.0048354	1	0.72051	1	1	1	0.47451	1	0.8036	1
Amp Peak 22(13q12.3)	109 (36%)	197	2.5916e-12	1.07e-09	0.00052724	0.17	0.22314	1	0.11529	1	0.40816	1	0.15094	1
Amp Peak 23(13q22.1)	118 (39%)	188	2.3187e-11	9.46e-09	0.0013015	0.407	0.13084	1	0.65181	1	0.32341	1	0.00077724	0.248
Amp Peak 24(15q26.1)	65 (21%)	241	5.7694e-16	2.45e-13	5.4206e-05	0.0191	1	1	0.88507	1	0.024062	1	0.013245	1
Amp Peak 25(17q12)	83 (27%)	223	3.1082e-17	1.33e-14	0.0017452	0.538	0.73604	1	0.16166	1	0.0088044	1	0.0036189	1
Amp Peak 26(18q11.2)	80 (26%)	226	9.1015e-09	3.56e-06	0.0020272	0.62	1	1	0.61561	1	0.33841	1	0.16432	1
Amp Peak 27(19q12)	82 (27%)	224	7.6547e-18	3.3e-15	2.2021e-08	8.59e-06	0.50979	1	0.060358	1	0.013821	1	1.133e-05	0.00412
Amp Peak 28(20q13.2)	191 (62%)	115	1.9754e-28	8.85e-26	4.2557e-07	0.000161	0.75462	1	0.11648	1	0.031477	1	0.023879	1
Amp Peak 29(Xq26.2)	60 (20%)	246	2.6854e-06	0.000991	0.38476	1	0.28058	1	0.53196	1	0.052445	1	0.92902	1
Del Peak  1(1p36.11)	81 (26%)	225	2.6125e-14	1.09e-11	0.0003913	0.128	0.35798	1	0.53759	1	0.069801	1	0.011841	1
Del Peak  2(1p13.2)	55 (18%)	251	2.4199e-12	1e-09	0.0067353	1	0.16228	1	0.70704	1	0.052445	1	0.030831	1
Del Peak  3(1q44)	21 (7%)	285	0.0072989	1	0.012135	1	0.41206	1	0.83965	1	0.20854	1	0.061731	1
Del Peak  4(2q32.1)	34 (11%)	272	0.00020475	0.0684	0.16384	1	0.66403	1	0.72994	1	0.27886	1	0.061364	1
Del Peak  5(2q37.2)	40 (13%)	266	4.3265e-07	0.000164	0.0069438	1	0.60692	1	0.64265	1	0.11383	1	0.008889	1
Del Peak  6(3p26.1)	77 (25%)	229	3.5344e-12	1.46e-09	0.00059576	0.192	0.18538	1	0.089908	1	0.062313	1	0.0052468	1
Del Peak  7(3p14.2)	97 (32%)	209	4.6567e-15	1.96e-12	0.00010061	0.0343	0.48761	1	0.13786	1	0.20507	1	0.013841	1
Del Peak  8(3q26.31)	32 (10%)	274	1.981e-05	0.00715	0.0089274	1	0.34487	1	0.35593	1	0.059945	1	0.0065904	1
Del Peak  9(4q22.1)	120 (39%)	186	1.5125e-25	6.75e-23	1.2959e-07	4.96e-05	0.22314	1	0.54349	1	0.0033435	0.993	0.00020491	0.0684
Del Peak 10(4q34.3)	111 (36%)	195	9.9044e-21	4.37e-18	1.7752e-06	0.000659	0.030536	1	0.16512	1	0.013813	1	6.3857e-05	0.0223
Del Peak 11(5q11.2)	94 (31%)	212	8.2976e-27	3.71e-24	2.9309e-11	1.19e-08	0.045209	1	0.14976	1	2.2719e-05	0.00816	4.0518e-06	0.00149
Del Peak 12(6p25.3)	66 (22%)	240	7.1181e-10	2.83e-07	0.0029039	0.865	0.69808	1	0.42391	1	0.28028	1	0.00029289	0.0967
Del Peak 13(6q26)	58 (19%)	248	2.7147e-07	0.000103	0.018452	1	0.45655	1	0.60269	1	0.22263	1	0.16146	1
Del Peak 14(7q31.1)	41 (13%)	265	3.0198e-08	1.17e-05	0.0039734	1	0.41206	1	0.55652	1	0.030548	1	0.083854	1
Del Peak 15(7q36.3)	55 (18%)	251	3.804e-17	1.62e-14	7.8739e-06	0.00288	0.69808	1	0.49912	1	0.17944	1	0.0016965	0.524
Del Peak 16(8p23.2)	71 (23%)	235	3.779e-18	1.64e-15	2.1749e-06	0.000805	0.50979	1	0.89859	1	0.047351	1	0.00017717	0.0595
Del Peak 17(9p23)	110 (36%)	196	1.5878e-23	7.07e-21	0.00028502	0.0943	0.12426	1	0.44922	1	0.033106	1	0.026195	1
Del Peak 18(9p21.3)	109 (36%)	197	5.6465e-23	2.51e-20	1.1851e-09	4.69e-07	0.21515	1	0.83869	1	0.0066167	1	0.0024305	0.739
Del Peak 19(9q21.11)	68 (22%)	238	1.1217e-14	4.71e-12	0.0018052	0.554	0.69808	1	0.64102	1	0.081703	1	0.0024815	0.749
Del Peak 20(10p14)	39 (13%)	267	6.6416e-08	2.56e-05	0.003753	1	0.72051	1	0.88507	1	0.016654	1	0.045935	1
Del Peak 21(10q22.3)	46 (15%)	260	4.0223e-12	1.65e-09	8.9162e-05	0.0309	0.13239	1	0.15048	1	0.019372	1	0.0015599	0.485
Del Peak 22(10q23.31)	67 (22%)	239	1.1678e-18	5.08e-16	1.3641e-06	0.000509	0.0068449	1	0.089908	1	8.965e-05	0.0309	4.6912e-05	0.0166
Del Peak 23(11p15.4)	56 (18%)	250	1.3389e-10	5.41e-08	0.00016246	0.0549	1	1	1	1	0.17274	1	0.0026858	0.806
Del Peak 24(11q23.2)	55 (18%)	251	1.1829e-06	0.000444	0.00087204	0.276	1	1	0.21463	1	0.060725	1	0.22129	1
Del Peak 25(12p13.31)	46 (15%)	260	2.2849e-11	9.35e-09	0.0024404	0.739	1	1	1	1	0.08018	1	0.33515	1
Del Peak 26(13q14.2)	40 (13%)	266	3.1211e-05	0.0111	0.01935	1	0.41206	1	0.55652	1	0.40446	1	0.879	1
Del Peak 27(14q21.1)	67 (22%)	239	1.0579e-09	4.2e-07	0.041152	1	0.13239	1	0.67439	1	0.034287	1	0.017706	1
Del Peak 28(14q32.33)	81 (26%)	225	2.7032e-10	1.08e-07	0.036975	1	0.088339	1	0.4576	1	0.25067	1	0.17404	1
Del Peak 29(15q11.2)	73 (24%)	233	2.3962e-16	1.02e-13	2.8607e-05	0.0102	0.0093419	1	0.010985	1	0.010034	1	0.0001066	0.0362
Del Peak 30(15q15.1)	75 (25%)	231	3.9243e-15	1.66e-12	9.1886e-05	0.0315	0.045209	1	0.089908	1	0.035369	1	5.9551e-05	0.0209
Del Peak 31(16p13.3)	52 (17%)	254	3.294e-12	1.36e-09	0.0006761	0.217	1	1	0.64102	1	0.014281	1	0.18078	1
Del Peak 32(16q23.1)	104 (34%)	202	1.1278e-10	4.57e-08	0.026617	1	0.54337	1	0.91536	1	0.66532	1	0.18215	1
Del Peak 33(17p12)	103 (34%)	203	8.3164e-32	3.74e-29	9.3582e-08	3.59e-05	0.20275	1	0.50906	1	0.0014182	0.442	2.0086e-05	0.00723
Del Peak 34(17q24.3)	50 (16%)	256	9.379e-12	3.85e-09	0.022507	1	0.088339	1	0.055065	1	0.014457	1	0.0011503	0.362
Del Peak 35(18q21.2)	124 (41%)	182	8.7687e-19	3.83e-16	8.9208e-05	0.0309	0.76349	1	0.19112	1	0.11159	1	0.014249	1
Del Peak 36(18q23)	116 (38%)	190	1.2104e-17	5.2e-15	1.5791e-05	0.00573	1	1	0.9173	1	0.045823	1	0.0051188	1
Del Peak 37(19p13.3)	91 (30%)	215	2.7514e-29	1.24e-26	1.9835e-12	8.25e-10	0.34747	1	0.36101	1	0.00016945	0.0571	5.7857e-09	2.27e-06
Del Peak 38(19q13.11)	40 (13%)	266	1.3932e-10	5.61e-08	0.00014165	0.048	0.094572	1	0.22978	1	0.0035446	1	5.2174e-05	0.0184
Del Peak 39(20p12.1)	50 (16%)	256	1.8648e-10	7.5e-08	7.7318e-05	0.0269	1	1	0.83965	1	0.024356	1	0.015975	1
Del Peak 40(20p12.1)	50 (16%)	256	1.8648e-10	7.5e-08	7.7318e-05	0.0269	1	1	0.83965	1	0.024356	1	0.015975	1
Del Peak 41(21q11.2)	97 (32%)	209	2.7463e-15	1.16e-12	0.00027957	0.0928	0.50979	1	0.89859	1	0.011543	1	0.27471	1
Del Peak 42(21q22.13)	102 (33%)	204	6.0662e-16	2.57e-13	0.00040461	0.131	0.21515	1	0.57977	1	0.06152	1	0.14265	1
Del Peak 43(22q13.31)	91 (30%)	215	1.6068e-19	7.05e-17	1.0543e-06	0.000396	1	1	1	1	0.0027729	0.829	0.00019023	0.0637
Del Peak 44(Xp22.2)	52 (17%)	254	2.6369e-14	1.1e-11	0.00031084	0.102	0.69808	1	0.73203	1	0.13075	1	0.0083929	1
Del Peak 45(Xp21.1)	45 (15%)	261	1.5419e-13	6.43e-11	0.0045923	1	0.28058	1	0.28273	1	0.020849	1	0.076217	1
Del Peak 46(Xq21.33)	38 (12%)	268	8.309e-08	3.2e-05	0.0026062	0.784	0.45655	1	0.67439	1	0.049573	1	0.010772	1