name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-B7-5816-01A-21D-1600-08	1697	1370	327	1012	1.926930e-01	1	exome+100bp flanks	34834024	358	1011	1.027731e-05	2.902335e-05
TCGA-B7-5818-01A-11D-1600-08	517	424	93	322	1.798839e-01	1	exome+100bp flanks	34834024	102	321	2.928172e-06	9.215128e-06
TCGA-BR-4183-01A-02D-1126-08	3080	138	2942	92	9.551948e-01	3	all genome (WGS)	34834024	46	91	1.320548e-06	2.612388e-06
TCGA-BR-4184-01A-01D-1126-08	17718	4615	13103	3281	7.395304e-01	2	all capture (no interval list)	65505363	1329	3274	2.028842e-05	4.998064e-05
TCGA-BR-4187-01A-01D-1126-08	2569	77	2492	55	9.700272e-01	3	all genome (WGS)	34834024	22	55	6.315664e-07	1.578916e-06
TCGA-BR-4188-01A-01D-1126-08	1703	153	1550	120	9.101585e-01	3	all genome (WGS)	34834024	33	118	9.473496e-07	3.387493e-06
TCGA-BR-4191-01A-02D-1126-08	1682	247	1435	187	8.531510e-01	2	all capture (no interval list)	65505363	60	184	9.159555e-07	2.808930e-06
TCGA-BR-4201-01A-01D-1126-08	9002	1504	7498	1052	8.329260e-01	2	all capture (no interval list)	65505363	452	1050	6.900198e-06	1.602922e-05
TCGA-BR-4253-01A-01D-1126-08	1818	265	1553	194	8.542354e-01	2	all capture (no interval list)	65505363	71	193	1.083881e-06	2.946324e-06
TCGA-BR-4255-01A-01D-1126-08	3661	131	3530	86	9.642174e-01	3	all genome (WGS)	34834024	45	85	1.291840e-06	2.440143e-06
TCGA-BR-4256-01A-01D-1126-08	6499	1201	5298	836	8.152023e-01	2	all capture (no interval list)	65505363	364	831	5.556797e-06	1.268598e-05
TCGA-BR-4257-01A-01D-1126-08	5575	1274	4301	879	7.714798e-01	2	all capture (no interval list)	65505363	394	872	6.014775e-06	1.331189e-05
TCGA-BR-4267-01A-01D-1126-08	3191	110	3081	80	9.655280e-01	3	all genome (WGS)	34834024	30	80	8.612269e-07	2.296605e-06
TCGA-BR-4279-01A-01D-1126-08	1834	71	1763	43	9.612868e-01	3	all genome (WGS)	34834024	28	42	8.038118e-07	1.205718e-06
TCGA-BR-4280-01A-01D-1126-08	9636	932	8704	709	9.032794e-01	3	all genome (WGS)	34834024	222	708	6.373079e-06	2.032496e-05
TCGA-BR-4292-01A-01D-1126-08	12666	1578	11088	1153	8.754145e-01	2	all capture (no interval list)	65505363	422	1142	6.442221e-06	1.743369e-05
TCGA-BR-4294-01A-01D-1126-08	1209	40	1169	32	9.669148e-01	3	all genome (WGS)	34834024	8	30	2.296605e-07	8.612269e-07
TCGA-BR-4357-01A-01D-1158-08	430	320	110	239	2.558140e-01	1	exome+100bp flanks	34834024	81	239	2.325313e-06	6.861108e-06
TCGA-BR-4361-01A-01D-1158-08	4965	3269	1696	2351	3.415911e-01	2	all capture (no interval list)	65505363	917	2342	1.399885e-05	3.575280e-05
TCGA-BR-4362-01A-01D-1158-08	3021	1899	1122	1388	3.714002e-01	2	all capture (no interval list)	65505363	511	1384	7.800888e-06	2.112804e-05
TCGA-BR-4363-01A-01D-1158-08	1303	619	684	451	5.249424e-01	2	all capture (no interval list)	65505363	168	449	2.564676e-06	6.854401e-06
TCGA-BR-4366-01A-01D-1158-08	281	187	94	137	3.345196e-01	2	all capture (no interval list)	65505363	50	137	7.632963e-07	2.091432e-06
TCGA-BR-4367-01A-01D-1158-08	198	139	59	100	2.979798e-01	1	exome+100bp flanks	34834024	39	99	1.119595e-06	2.842049e-06
TCGA-BR-4368-01A-01D-1158-08	2342	1502	840	1053	3.586678e-01	2	all capture (no interval list)	65505363	449	1051	6.854401e-06	1.604449e-05
TCGA-BR-4369-01A-01D-1158-08	289	209	80	154	2.768166e-01	1	exome+100bp flanks	34834024	55	154	1.578916e-06	4.420965e-06
TCGA-BR-4370-01A-01D-1158-08	1714	1190	524	838	3.057176e-01	2	all capture (no interval list)	65505363	351	836	5.358340e-06	1.276231e-05
TCGA-BR-4371-01A-01D-1158-08	261	189	72	136	2.758621e-01	1	exome+100bp flanks	34834024	53	135	1.521501e-06	3.875521e-06
TCGA-BR-6452-01A-12D-1800-08	10058	7958	2100	5797	2.087890e-01	1	exome+100bp flanks	34834024	2160	5785	6.200834e-05	1.660733e-04
TCGA-BR-6453-01A-11D-1800-08	278	220	58	159	2.086331e-01	1	exome+100bp flanks	34834024	61	156	1.751161e-06	4.478380e-06
TCGA-BR-6454-01A-11D-1800-08	227	178	49	130	2.158590e-01	1	exome+100bp flanks	34834024	48	129	1.377963e-06	3.703276e-06
TCGA-BR-6455-01A-11D-1800-08	164	117	47	78	2.865854e-01	1	exome+100bp flanks	34834024	38	77	1.090887e-06	2.210482e-06
TCGA-BR-6456-01A-11D-1800-08	291	237	54	167	1.855670e-01	1	exome+100bp flanks	34834024	70	166	2.009530e-06	4.765456e-06
TCGA-BR-6457-01A-21D-1800-08	221	157	64	112	2.895928e-01	1	exome+100bp flanks	34834024	45	112	1.291840e-06	3.215247e-06
TCGA-BR-6458-01A-11D-1800-08	450	349	101	260	2.244444e-01	1	exome+100bp flanks	34834024	89	259	2.554973e-06	7.435259e-06
TCGA-BR-6564-01A-12D-1882-08	99	33	66	22	6.666667e-01	2	all capture (no interval list)	65505363	11	22	1.679252e-07	3.358504e-07
TCGA-BR-6565-01A-11D-1800-08	218	174	44	138	2.018349e-01	1	exome+100bp flanks	34834024	36	138	1.033472e-06	3.961644e-06
TCGA-BR-6566-01A-11D-1800-08	529	17	512	17	9.678639e-01	2	all capture (no interval list)	65505363	0	17	0	2.595207e-07
TCGA-BR-6705-01A-12D-1882-08	152	108	44	84	2.894737e-01	1	exome+100bp flanks	34834024	24	84	6.889816e-07	2.411435e-06
TCGA-BR-6706-01A-11D-1882-08	320	244	76	191	2.375000e-01	1	exome+100bp flanks	34834024	53	191	1.521501e-06	5.483145e-06
TCGA-BR-6707-01A-11D-1882-08	120	79	41	60	3.416667e-01	2	all capture (no interval list)	65505363	18	60	2.747867e-07	9.159555e-07
TCGA-BR-6709-01A-11D-1882-08	93	53	40	42	4.301075e-01	2	all capture (no interval list)	65505363	11	42	1.679252e-07	6.411689e-07
TCGA-BR-6710-01A-11D-1882-08	55	3	52	3	9.454545e-01	2	all capture (no interval list)	65505363	0	3	0	4.579778e-08
TCGA-BR-6801-01A-11D-1882-08	93	66	27	47	2.903226e-01	1	exome+100bp flanks	34834024	19	47	5.454437e-07	1.349256e-06
TCGA-BR-6802-01A-11D-1882-08	706	518	188	357	2.662890e-01	1	exome+100bp flanks	34834024	161	354	4.621918e-06	1.016248e-05
TCGA-BR-6803-01A-11D-1882-08	75	22	53	14	7.066667e-01	2	all capture (no interval list)	65505363	8	14	1.221274e-07	2.137230e-07
TCGA-BR-6852-01A-11D-1882-08	1631	1161	470	832	2.881668e-01	1	exome+100bp flanks	34834024	328	830	9.416081e-06	2.382728e-05
TCGA-CD-5798-01A-11D-1600-08	147	100	47	74	3.197279e-01	2	all capture (no interval list)	65505363	26	73	3.969141e-07	1.114413e-06
TCGA-CD-5799-01A-11D-1600-08	79	45	34	33	4.303797e-01	2	all capture (no interval list)	65505363	12	33	1.831911e-07	5.037755e-07
TCGA-CD-5800-01A-11D-1600-08	271	218	53	161	1.955720e-01	1	exome+100bp flanks	34834024	57	161	1.636331e-06	4.621918e-06
TCGA-CD-5801-01A-11D-1600-08	576	483	93	376	1.614583e-01	1	exome+100bp flanks	34834024	107	376	3.071709e-06	1.079404e-05
TCGA-CD-5802-01A-11D-1600-08	102	54	48	40	4.705882e-01	2	all capture (no interval list)	65505363	14	40	2.137230e-07	6.106370e-07
TCGA-CD-5803-01A-11D-1600-08	79	43	36	33	4.556962e-01	2	all capture (no interval list)	65505363	10	33	1.526593e-07	5.037755e-07
TCGA-CD-5813-01A-11D-1600-08	255	190	65	141	2.549020e-01	1	exome+100bp flanks	34834024	48	141	1.377963e-06	4.047767e-06
TCGA-CG-4300-01A-01D-1158-08	264	180	84	135	3.181818e-01	2	all capture (no interval list)	65505363	45	134	6.869667e-07	2.045634e-06
TCGA-CG-4301-01A-01D-1158-08	133	88	45	60	3.383459e-01	2	all capture (no interval list)	65505363	28	60	4.274459e-07	9.159555e-07
TCGA-CG-4304-01A-01D-1158-08	157	96	61	65	3.885350e-01	2	all capture (no interval list)	65505363	31	65	4.732437e-07	9.922852e-07
TCGA-CG-4305-01A-01D-1158-08	1922	1240	682	875	3.548387e-01	2	all capture (no interval list)	65505363	364	874	5.556797e-06	1.334242e-05
TCGA-CG-4306-01A-01D-1158-08	2059	1192	867	853	4.210782e-01	2	all capture (no interval list)	65505363	337	851	5.144617e-06	1.299130e-05
TCGA-CG-4436-01A-01D-1158-08	282	214	68	161	2.411348e-01	1	exome+100bp flanks	34834024	53	161	1.521501e-06	4.621918e-06
TCGA-CG-4437-01A-01D-1800-08	693	576	117	438	1.688312e-01	1	exome+100bp flanks	34834024	138	436	3.961644e-06	1.251650e-05
TCGA-CG-4438-01A-01D-1158-08	251	170	81	135	3.227092e-01	2	all capture (no interval list)	65505363	35	135	5.343074e-07	2.060900e-06
TCGA-CG-4440-01A-01D-1158-08	231	144	87	117	3.766234e-01	2	all capture (no interval list)	65505363	27	117	4.121800e-07	1.786113e-06
TCGA-CG-4441-01A-01D-1800-08	175	131	44	94	2.514286e-01	1	exome+100bp flanks	34834024	37	94	1.062180e-06	2.698511e-06
TCGA-CG-4442-01A-01D-1158-08	4295	1957	2338	1414	5.443539e-01	2	all capture (no interval list)	65505363	542	1411	8.274132e-06	2.154022e-05
TCGA-CG-4443-01A-01D-1158-08	191	125	66	86	3.455497e-01	2	all capture (no interval list)	65505363	39	86	5.953711e-07	1.312870e-06
TCGA-CG-4444-01A-01D-1158-08	289	227	62	160	2.145329e-01	1	exome+100bp flanks	34834024	67	160	1.923407e-06	4.593210e-06
TCGA-CG-4449-01A-01D-1158-08	187	124	63	96	3.368984e-01	2	all capture (no interval list)	65505363	28	94	4.274459e-07	1.434997e-06
TCGA-CG-4455-01A-01D-1158-08	127	77	50	52	3.937008e-01	2	all capture (no interval list)	65505363	25	52	3.816481e-07	7.938281e-07
TCGA-CG-4460-01A-01D-1158-08	3514	2227	1287	1599	3.662493e-01	2	all capture (no interval list)	65505363	628	1593	9.587001e-06	2.431862e-05
TCGA-CG-4462-01A-01D-1158-08	170	95	75	63	4.411765e-01	2	all capture (no interval list)	65505363	32	63	4.885096e-07	9.617533e-07
TCGA-CG-4465-01A-01D-1158-08	1478	706	772	519	5.223275e-01	2	all capture (no interval list)	65505363	186	518	2.839462e-06	7.907749e-06
TCGA-CG-4466-01A-01D-1158-08	320	231	89	173	2.781250e-01	1	exome+100bp flanks	34834024	57	173	1.636331e-06	4.966409e-06
TCGA-CG-4469-01A-01D-1158-08	495	350	145	273	2.929293e-01	1	exome+100bp flanks	34834024	77	273	2.210482e-06	7.837165e-06
TCGA-CG-4472-01A-01D-1158-08	276	206	70	160	2.536232e-01	1	exome+100bp flanks	34834024	46	160	1.320548e-06	4.593210e-06
TCGA-CG-4474-01A-02D-1158-08	174	122	52	90	2.988506e-01	1	exome+100bp flanks	34834024	32	90	9.186421e-07	2.583681e-06
TCGA-CG-4475-01A-01D-1158-08	130	61	69	45	5.307692e-01	2	all capture (no interval list)	65505363	16	45	2.442548e-07	6.869667e-07
TCGA-CG-4476-01A-01D-1158-08	211	159	52	126	2.464455e-01	1	exome+100bp flanks	34834024	33	126	9.473496e-07	3.617153e-06
TCGA-CG-4477-01A-01D-1158-08	164	81	83	61	5.060976e-01	2	all capture (no interval list)	65505363	20	61	3.053185e-07	9.312215e-07
TCGA-CG-5716-01A-21D-1800-08	48	21	27	18	5.625000e-01	2	all capture (no interval list)	65505363	3	18	4.579778e-08	2.747867e-07
TCGA-CG-5717-01A-11D-1600-08	203	153	50	111	2.463054e-01	1	exome+100bp flanks	34834024	42	111	1.205718e-06	3.186540e-06
TCGA-CG-5718-01A-11D-1600-08	132	99	33	75	2.500000e-01	1	exome+100bp flanks	34834024	24	74	6.889816e-07	2.124360e-06
TCGA-CG-5719-01A-11D-1600-08	127	81	46	59	3.622047e-01	2	all capture (no interval list)	65505363	22	59	3.358504e-07	9.006896e-07
TCGA-CG-5720-01A-11D-1600-08	132	91	41	63	3.106061e-01	2	all capture (no interval list)	65505363	28	63	4.274459e-07	9.617533e-07
TCGA-CG-5721-01A-11D-1600-08	5911	4535	1376	3260	2.327863e-01	1	exome+100bp flanks	34834024	1272	3247	3.651602e-05	9.321346e-05
TCGA-CG-5722-01A-21D-1600-08	124	96	28	69	2.258065e-01	1	exome+100bp flanks	34834024	27	68	7.751042e-07	1.952114e-06
TCGA-CG-5723-01A-11D-1600-08	2706	1754	952	1255	3.518108e-01	2	all capture (no interval list)	65505363	499	1252	7.617697e-06	1.911294e-05
TCGA-CG-5724-01A-11D-1600-08	191	127	64	95	3.350785e-01	2	all capture (no interval list)	65505363	32	95	4.885096e-07	1.450263e-06
TCGA-CG-5725-01A-11D-1600-08	242	116	126	101	5.206612e-01	2	all capture (no interval list)	65505363	15	100	2.289889e-07	1.526593e-06
TCGA-CG-5726-01A-11D-1600-08	3569	1516	2053	1093	5.752312e-01	2	all capture (no interval list)	65505363	421	1087	6.426955e-06	1.659406e-05
TCGA-CG-5727-01A-11D-1600-08	251	190	61	131	2.430279e-01	1	exome+100bp flanks	34834024	59	130	1.693746e-06	3.731983e-06
TCGA-CG-5728-01A-11D-1600-08	2124	1421	703	990	3.309793e-01	2	all capture (no interval list)	65505363	431	988	6.579614e-06	1.508273e-05
TCGA-CG-5730-01A-11D-1600-08	237	186	51	127	2.151899e-01	1	exome+100bp flanks	34834024	59	127	1.693746e-06	3.645861e-06
TCGA-CG-5732-01A-11D-1600-08	97	66	31	44	3.195876e-01	2	all capture (no interval list)	65505363	22	44	3.358504e-07	6.717007e-07
TCGA-CG-5733-01A-11D-1600-08	2356	1150	1206	820	5.118846e-01	2	all capture (no interval list)	65505363	330	818	5.037755e-06	1.248753e-05
TCGA-CG-5734-01A-11D-1600-08	141	104	37	80	2.624113e-01	1	exome+100bp flanks	34834024	24	80	6.889816e-07	2.296605e-06
TCGA-D7-5577-01A-01D-1600-08	182	130	52	103	2.857143e-01	1	exome+100bp flanks	34834024	27	103	7.751042e-07	2.956879e-06
TCGA-D7-5578-01A-01D-1600-08	330	264	66	188	2.000000e-01	1	exome+100bp flanks	34834024	76	188	2.181775e-06	5.397022e-06
TCGA-D7-5579-01A-01D-1600-08	220	172	48	133	2.181818e-01	1	exome+100bp flanks	34834024	39	132	1.119595e-06	3.789399e-06
TCGA-D7-6518-01A-11D-1800-08	132	88	44	62	3.333333e-01	2	all capture (no interval list)	65505363	26	62	3.969141e-07	9.464874e-07
TCGA-D7-6519-01A-11D-1800-08	112	67	45	51	4.017857e-01	2	all capture (no interval list)	65505363	16	51	2.442548e-07	7.785622e-07
TCGA-D7-6520-01A-11D-1800-08	118	73	45	54	3.813559e-01	2	all capture (no interval list)	65505363	19	54	2.900526e-07	8.243600e-07
TCGA-D7-6521-01A-11D-1800-08	116	85	31	67	2.672414e-01	1	exome+100bp flanks	34834024	18	66	5.167362e-07	1.894699e-06
TCGA-D7-6522-01A-11D-1800-08	111	71	40	54	3.603604e-01	2	all capture (no interval list)	65505363	17	54	2.595207e-07	8.243600e-07
TCGA-D7-6524-01A-11D-1800-08	167	129	38	97	2.275449e-01	1	exome+100bp flanks	34834024	32	97	9.186421e-07	2.784634e-06
TCGA-D7-6525-01A-11D-1800-08	247	189	58	135	2.348178e-01	1	exome+100bp flanks	34834024	54	134	1.550208e-06	3.846814e-06
TCGA-D7-6526-01A-11D-1800-08	308	249	59	179	1.915584e-01	1	exome+100bp flanks	34834024	69	179	1.980822e-06	5.138654e-06
TCGA-D7-6527-01A-11D-1800-08	313	242	71	190	2.268371e-01	1	exome+100bp flanks	34834024	52	190	1.492793e-06	5.454437e-06
TCGA-D7-6528-01A-11D-1800-08	488	382	106	296	2.172131e-01	1	exome+100bp flanks	34834024	86	296	2.468851e-06	8.497439e-06
TCGA-D7-6815-01A-11D-1882-08	218	161	57	110	2.614679e-01	1	exome+100bp flanks	34834024	51	110	1.464086e-06	3.157832e-06
TCGA-D7-6817-01A-11D-1882-08	137	96	41	71	2.992701e-01	1	exome+100bp flanks	34834024	25	71	7.176891e-07	2.038237e-06
TCGA-D7-6818-01A-11D-1882-08	216	175	41	140	1.898148e-01	1	exome+100bp flanks	34834024	35	139	1.004765e-06	3.990352e-06
TCGA-D7-6820-01A-11D-1882-08	155	112	43	77	2.774194e-01	1	exome+100bp flanks	34834024	35	77	1.004765e-06	2.210482e-06
TCGA-D7-6822-01A-11D-1882-08	340	276	64	226	1.882353e-01	1	exome+100bp flanks	34834024	50	226	1.435378e-06	6.487910e-06
TCGA-EQ-5647-01A-01D-1600-08	161	95	66	71	4.099379e-01	2	all capture (no interval list)	65505363	24	70	3.663822e-07	1.068615e-06
TCGA-F1-6177-01A-11D-1800-08	3692	1552	2140	1153	5.796316e-01	2	all capture (no interval list)	65505363	398	1149	6.075838e-06	1.754055e-05
TCGA-F1-6874-01A-11D-1882-08	1647	948	699	675	4.244080e-01	2	all capture (no interval list)	65505363	273	673	4.167598e-06	1.027397e-05