name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-BJ-A0YZ-01A-11D-A10S-08	53	45	8	34	1.509434e-01	1	exome+100bp flanks	34834024	10	33	2.870756e-07	9.473496e-07
TCGA-BJ-A0Z0-01A-11D-A10S-08	45	37	8	32	1.777778e-01	1	exome+100bp flanks	34834024	4	31	1.148303e-07	8.899345e-07
TCGA-BJ-A0Z2-01A-11D-A10S-08	34	21	13	15	3.823529e-01	2	all capture (no interval list)	65505363	5	15	7.632963e-08	2.289889e-07
TCGA-BJ-A0Z3-01A-11D-A13W-08	35	22	13	17	3.714286e-01	2	all capture (no interval list)	65505363	4	16	6.106370e-08	2.442548e-07
TCGA-BJ-A0Z5-01A-11D-A10S-08	25	17	8	13	3.200000e-01	2	all capture (no interval list)	65505363	4	13	6.106370e-08	1.984570e-07
TCGA-BJ-A0Z9-01A-11D-A10S-08	39	23	16	18	4.102564e-01	2	all capture (no interval list)	65505363	4	17	6.106370e-08	2.595207e-07
TCGA-BJ-A0ZA-01A-11D-A10S-08	28	21	7	17	2.500000e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-BJ-A0ZB-01A-11D-A10S-08	70	67	3	56	4.285714e-02	2	all capture (no interval list)	65505363	11	55	1.679252e-07	8.396259e-07
TCGA-BJ-A0ZC-01A-12D-A13W-08	30	25	5	14	1.666667e-01	1	exome+100bp flanks	34834024	11	14	3.157832e-07	4.019059e-07
TCGA-BJ-A0ZE-01A-11D-A10S-08	30	18	12	14	4.000000e-01	2	all capture (no interval list)	65505363	4	14	6.106370e-08	2.137230e-07
TCGA-BJ-A0ZF-01A-11D-A10S-08	47	35	12	27	2.553191e-01	1	exome+100bp flanks	34834024	8	26	2.296605e-07	7.463967e-07
TCGA-BJ-A0ZG-01A-11D-A10S-08	26	15	11	12	4.230769e-01	2	all capture (no interval list)	65505363	3	12	4.579778e-08	1.831911e-07
TCGA-BJ-A0ZH-01A-11D-A10S-08	46	36	10	29	2.173913e-01	1	exome+100bp flanks	34834024	7	28	2.009530e-07	8.038118e-07
TCGA-BJ-A0ZJ-01A-11D-A10S-08	7	4	3	3	4.285714e-01	2	all capture (no interval list)	65505363	1	2	1.526593e-08	3.053185e-08
TCGA-BJ-A18Y-01A-11D-A13W-08	33	23	10	19	3.030303e-01	2	all capture (no interval list)	65505363	4	17	6.106370e-08	2.595207e-07
TCGA-BJ-A18Z-01A-21D-A13W-08	51	19	32	17	6.274510e-01	2	all capture (no interval list)	65505363	2	16	3.053185e-08	2.442548e-07
TCGA-BJ-A190-01A-11D-A13W-08	37	15	22	13	5.945946e-01	2	all capture (no interval list)	65505363	1	13	1.526593e-08	1.984570e-07
TCGA-BJ-A191-01A-11D-A13W-08	32	26	6	18	1.875000e-01	1	exome+100bp flanks	34834024	8	17	2.296605e-07	4.880286e-07
TCGA-BJ-A192-01A-31D-A13W-08	43	10	33	8	7.674419e-01	2	all capture (no interval list)	65505363	2	7	3.053185e-08	1.068615e-07
TCGA-BJ-A28R-01A-11D-A16O-08	24	17	7	14	2.916667e-01	1	exome+100bp flanks	34834024	3	14	8.612269e-08	4.019059e-07
TCGA-BJ-A28S-01A-11D-A19J-08	53	35	18	30	3.396226e-01	2	all capture (no interval list)	65505363	4	27	6.106370e-08	4.121800e-07
TCGA-BJ-A28T-01A-11D-A16O-08	9	4	5	4	5.555556e-01	2	all capture (no interval list)	65505363	0	4	0	6.106370e-08
TCGA-BJ-A28V-01A-11D-A19J-08	33	30	3	24	9.090909e-02	2	all capture (no interval list)	65505363	5	23	7.632963e-08	3.511163e-07
TCGA-BJ-A28X-01A-11D-A22D-08	53	41	12	30	2.264151e-01	1	exome+100bp flanks	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-BJ-A28Z-01A-11D-A16O-08	36	27	9	16	2.500000e-01	1	exome+100bp flanks	34834024	11	16	3.157832e-07	4.593210e-07
TCGA-BJ-A290-01A-11D-A17V-08	46	34	12	22	2.608696e-01	1	exome+100bp flanks	34834024	12	21	3.444908e-07	6.028589e-07
TCGA-BJ-A2N7-01A-11D-A18F-08	10	6	4	6	4.000000e-01	2	all capture (no interval list)	65505363	0	6	0	9.159555e-08
TCGA-BJ-A2N8-01A-11D-A18F-08	25	20	5	15	2.000000e-01	1	exome+100bp flanks	34834024	5	13	1.435378e-07	3.731983e-07
TCGA-BJ-A2N9-01A-11D-A18F-08	20	14	6	9	3.000000e-01	2	all capture (no interval list)	65505363	5	9	7.632963e-08	1.373933e-07
TCGA-BJ-A2NA-01A-12D-A19J-08	51	46	5	29	9.803922e-02	1	exome+100bp flanks	34834024	16	29	4.593210e-07	8.325194e-07
TCGA-BJ-A2P4-01A-11D-A18F-08	34	27	7	20	2.058824e-01	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-BJ-A3EZ-01A-11D-A202-08	33	31	2	24	6.060606e-02	2	all capture (no interval list)	65505363	7	23	1.068615e-07	3.511163e-07
TCGA-BJ-A3F0-01A-11D-A202-08	49	21	28	15	5.714286e-01	2	all capture (no interval list)	65505363	6	14	9.159555e-08	2.137230e-07
TCGA-BJ-A3PR-01A-11D-A21Z-08	38	28	10	23	2.631579e-01	1	exome+100bp flanks	34834024	5	23	1.435378e-07	6.602740e-07
TCGA-BJ-A3PT-01A-12D-A21Z-08	44	31	13	25	2.954545e-01	1	exome+100bp flanks	34834024	6	25	1.722454e-07	7.176891e-07
TCGA-BJ-A3PU-01A-11D-A21Z-08	57	28	29	23	5.087719e-01	2	all capture (no interval list)	65505363	5	23	7.632963e-08	3.511163e-07
TCGA-CE-A13K-01A-11D-A10S-08	25	17	8	10	3.200000e-01	2	all capture (no interval list)	65505363	6	8	9.159555e-08	1.221274e-07
TCGA-CE-A27D-01A-11D-A16O-08	15	12	3	10	2.000000e-01	2	all capture (no interval list)	65505363	1	10	1.526593e-08	1.526593e-07
TCGA-CE-A3MD-01A-11D-A20C-08	62	26	36	24	5.806452e-01	2	all capture (no interval list)	65505363	2	22	3.053185e-08	3.358504e-07
TCGA-CE-A3ME-01A-11D-A20C-08	45	32	13	21	2.888889e-01	1	exome+100bp flanks	34834024	10	20	2.870756e-07	5.741513e-07
TCGA-DE-A0XZ-01A-11D-A17V-08	42	33	9	27	2.142857e-01	1	exome+100bp flanks	34834024	6	26	1.722454e-07	7.463967e-07
TCGA-DE-A0Y2-01A-11D-A10S-08	34	28	6	21	1.764706e-01	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-DE-A0Y3-01B-11D-A10S-08	39	26	13	16	3.333333e-01	2	all capture (no interval list)	65505363	9	15	1.373933e-07	2.289889e-07
TCGA-DE-A2OL-01A-11D-A18F-08	23	16	7	15	3.043478e-01	2	all capture (no interval list)	65505363	1	13	1.526593e-08	1.984570e-07
TCGA-DE-A3KN-01A-11D-A20C-08	39	22	17	19	4.358974e-01	2	all capture (no interval list)	65505363	3	18	4.579778e-08	2.747867e-07
TCGA-DJ-A13L-01A-11D-A21Z-08	79	44	35	35	4.430380e-01	2	all capture (no interval list)	65505363	8	35	1.221274e-07	5.343074e-07
TCGA-DJ-A13M-01A-11D-A10S-08	23	11	12	9	5.217391e-01	2	all capture (no interval list)	65505363	2	9	3.053185e-08	1.373933e-07
TCGA-DJ-A13O-01A-11D-A10S-08	15	6	9	6	6.000000e-01	2	all capture (no interval list)	65505363	0	5	0	7.632963e-08
TCGA-DJ-A13P-01A-11D-A10S-08	43	26	17	21	3.953488e-01	2	all capture (no interval list)	65505363	5	20	7.632963e-08	3.053185e-07
TCGA-DJ-A13R-01A-11D-A10S-08	36	23	13	16	3.611111e-01	2	all capture (no interval list)	65505363	7	15	1.068615e-07	2.289889e-07
TCGA-DJ-A13S-01A-11D-A10S-08	27	17	10	14	3.703704e-01	2	all capture (no interval list)	65505363	2	14	3.053185e-08	2.137230e-07
TCGA-DJ-A13T-01A-11D-A10S-08	24	15	9	13	3.750000e-01	2	all capture (no interval list)	65505363	2	13	3.053185e-08	1.984570e-07
TCGA-DJ-A13U-01A-11D-A10S-08	31	25	6	19	1.935484e-01	1	exome+100bp flanks	34834024	6	17	1.722454e-07	4.880286e-07
TCGA-DJ-A13V-01A-11D-A10S-08	23	11	12	7	5.217391e-01	2	all capture (no interval list)	65505363	4	6	6.106370e-08	9.159555e-08
TCGA-DJ-A13W-01A-11D-A10S-08	34	20	14	16	4.117647e-01	2	all capture (no interval list)	65505363	4	16	6.106370e-08	2.442548e-07
TCGA-DJ-A13X-01A-11D-A10S-08	34	24	10	21	2.941176e-01	1	exome+100bp flanks	34834024	3	21	8.612269e-08	6.028589e-07
TCGA-DJ-A1QD-01A-11D-A14W-08	22	12	10	12	4.545455e-01	2	all capture (no interval list)	65505363	0	12	0	1.831911e-07
TCGA-DJ-A1QE-01A-21D-A14W-08	30	25	5	20	1.666667e-01	1	exome+100bp flanks	34834024	5	20	1.435378e-07	5.741513e-07
TCGA-DJ-A1QF-01A-12D-A14W-08	26	20	6	8	2.307692e-01	1	exome+100bp flanks	34834024	12	7	3.444908e-07	2.009530e-07
TCGA-DJ-A1QG-01A-11D-A14W-08	31	22	9	15	2.903226e-01	1	exome+100bp flanks	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-DJ-A1QH-01A-21D-A14W-08	32	28	4	19	1.250000e-01	2	all capture (no interval list)	65505363	9	19	1.373933e-07	2.900526e-07
TCGA-DJ-A1QI-01A-11D-A14W-08	24	16	8	12	3.333333e-01	2	all capture (no interval list)	65505363	4	12	6.106370e-08	1.831911e-07
TCGA-DJ-A1QL-01A-11D-A14W-08	30	21	9	17	3.000000e-01	2	all capture (no interval list)	65505363	4	17	6.106370e-08	2.595207e-07
TCGA-DJ-A1QM-01A-11D-A14W-08	21	15	6	11	2.857143e-01	1	exome+100bp flanks	34834024	4	10	1.148303e-07	2.870756e-07
TCGA-DJ-A1QN-01A-11D-A14W-08	23	14	9	12	3.913043e-01	2	all capture (no interval list)	65505363	2	9	3.053185e-08	1.373933e-07
TCGA-DJ-A1QO-01A-11D-A14W-08	28	23	5	18	1.785714e-01	1	exome+100bp flanks	34834024	5	17	1.435378e-07	4.880286e-07
TCGA-DJ-A1QQ-01A-11D-A14W-08	24	18	6	13	2.500000e-01	1	exome+100bp flanks	34834024	5	12	1.435378e-07	3.444908e-07
TCGA-DJ-A2PN-01A-21D-A19J-08	15	10	5	6	3.333333e-01	2	all capture (no interval list)	65505363	4	6	6.106370e-08	9.159555e-08
TCGA-DJ-A2PO-01A-21D-A19J-08	21	15	6	13	2.857143e-01	1	exome+100bp flanks	34834024	2	12	5.741513e-08	3.444908e-07
TCGA-DJ-A2PP-01A-11D-A19J-08	22	21	1	15	4.545455e-02	2	all capture (no interval list)	65505363	6	14	9.159555e-08	2.137230e-07
TCGA-DJ-A2PQ-01A-11D-A18F-08	13	12	1	9	7.692308e-02	2	all capture (no interval list)	65505363	3	8	4.579778e-08	1.221274e-07
TCGA-DJ-A2PR-01A-11D-A19J-08	15	13	2	12	1.333333e-01	2	all capture (no interval list)	65505363	1	12	1.526593e-08	1.831911e-07
TCGA-DJ-A2PS-01A-11D-A18F-08	13	9	4	7	3.076923e-01	2	all capture (no interval list)	65505363	2	7	3.053185e-08	1.068615e-07
TCGA-DJ-A2PT-01A-11D-A18F-08	28	22	6	19	2.142857e-01	1	exome+100bp flanks	34834024	3	18	8.612269e-08	5.167362e-07
TCGA-DJ-A2PU-01A-12D-A19J-08	20	12	8	10	4.000000e-01	2	all capture (no interval list)	65505363	2	10	3.053185e-08	1.526593e-07
TCGA-DJ-A2PV-01A-11D-A19J-08	14	10	4	7	2.857143e-01	2	all capture (no interval list)	65505363	3	6	4.579778e-08	9.159555e-08
TCGA-DJ-A2PW-01A-11D-A19J-08	25	20	5	16	2.000000e-01	1	exome+100bp flanks	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-DJ-A2PX-01A-11D-A18F-08	11	9	2	9	1.818182e-01	2	all capture (no interval list)	65505363	0	8	0	1.221274e-07
TCGA-DJ-A2PY-01A-11D-A18F-08	25	18	7	11	2.800000e-01	1	exome+100bp flanks	34834024	7	11	2.009530e-07	3.157832e-07
TCGA-DJ-A2PZ-01A-21D-A18F-08	27	24	3	19	1.111111e-01	2	all capture (no interval list)	65505363	4	18	6.106370e-08	2.747867e-07
TCGA-DJ-A2Q0-01A-11D-A202-08	45	38	7	30	1.555556e-01	1	exome+100bp flanks	34834024	8	28	2.296605e-07	8.038118e-07
TCGA-DJ-A2Q1-01A-22D-A19J-08	18	12	6	10	3.333333e-01	2	all capture (no interval list)	65505363	1	9	1.526593e-08	1.373933e-07
TCGA-DJ-A2Q2-01A-11D-A19J-08	22	16	6	11	2.727273e-01	1	exome+100bp flanks	34834024	4	10	1.148303e-07	2.870756e-07
TCGA-DJ-A2Q3-01A-11D-A18F-08	25	22	3	19	1.200000e-01	2	all capture (no interval list)	65505363	2	18	3.053185e-08	2.747867e-07
TCGA-DJ-A2Q4-01A-21D-A18F-08	22	17	5	15	2.272727e-01	1	exome+100bp flanks	34834024	2	15	5.741513e-08	4.306135e-07
TCGA-DJ-A2Q5-01A-11D-A18F-08	15	12	3	9	2.000000e-01	2	all capture (no interval list)	65505363	3	9	4.579778e-08	1.373933e-07
TCGA-DJ-A2Q6-01A-11D-A18F-08	18	15	3	10	1.666667e-01	2	all capture (no interval list)	65505363	5	10	7.632963e-08	1.526593e-07
TCGA-DJ-A2Q7-01A-11D-A18F-08	31	20	11	13	3.548387e-01	2	all capture (no interval list)	65505363	7	13	1.068615e-07	1.984570e-07
TCGA-DJ-A2Q8-01A-11D-A18F-08	22	16	6	12	2.727273e-01	1	exome+100bp flanks	34834024	4	12	1.148303e-07	3.444908e-07
TCGA-DJ-A2Q9-01A-21D-A18F-08	25	22	3	19	1.200000e-01	2	all capture (no interval list)	65505363	3	19	4.579778e-08	2.900526e-07
TCGA-DJ-A2QA-01A-11D-A18F-08	30	22	8	18	2.666667e-01	1	exome+100bp flanks	34834024	4	18	1.148303e-07	5.167362e-07
TCGA-DJ-A2QB-01A-11D-A19J-08	26	22	4	18	1.538462e-01	2	all capture (no interval list)	65505363	4	18	6.106370e-08	2.747867e-07
TCGA-DJ-A2QC-01A-11D-A18F-08	25	21	4	16	1.600000e-01	2	all capture (no interval list)	65505363	5	16	7.632963e-08	2.442548e-07
TCGA-DJ-A3UK-01A-11D-A22D-08	35	28	7	17	2.000000e-01	1	exome+100bp flanks	34834024	10	17	2.870756e-07	4.880286e-07
TCGA-DJ-A3UM-01A-11D-A22D-08	57	9	48	5	8.421053e-01	2	all capture (no interval list)	65505363	4	5	6.106370e-08	7.632963e-08
TCGA-DJ-A3UN-01A-11D-A22D-08	61	50	11	41	1.803279e-01	1	exome+100bp flanks	34834024	9	37	2.583681e-07	1.062180e-06
TCGA-DJ-A3UO-01A-11D-A22D-08	44	30	14	24	3.181818e-01	2	all capture (no interval list)	65505363	6	20	9.159555e-08	3.053185e-07
TCGA-DJ-A3UP-01A-11D-A22D-08	40	35	5	29	1.250000e-01	1	exome+100bp flanks	34834024	6	29	1.722454e-07	8.325194e-07
TCGA-DJ-A3UQ-01A-11D-A22D-08	37	27	10	23	2.702703e-01	1	exome+100bp flanks	34834024	4	23	1.148303e-07	6.602740e-07
TCGA-DJ-A3UR-01A-11D-A22D-08	41	20	21	16	5.121951e-01	2	all capture (no interval list)	65505363	4	15	6.106370e-08	2.289889e-07
TCGA-DJ-A3US-01A-11D-A22D-08	36	26	10	20	2.777778e-01	1	exome+100bp flanks	34834024	5	19	1.435378e-07	5.454437e-07
TCGA-DJ-A3UT-01A-11D-A22D-08	31	25	6	21	1.935484e-01	1	exome+100bp flanks	34834024	4	21	1.148303e-07	6.028589e-07
TCGA-DJ-A3UU-01A-11D-A22D-08	29	19	10	16	3.448276e-01	2	all capture (no interval list)	65505363	3	16	4.579778e-08	2.442548e-07
TCGA-DJ-A3UV-01A-11D-A22D-08	27	21	6	13	2.222222e-01	1	exome+100bp flanks	34834024	7	11	2.009530e-07	3.157832e-07
TCGA-DJ-A3UW-01A-11D-A22D-08	23	18	5	14	2.173913e-01	1	exome+100bp flanks	34834024	3	14	8.612269e-08	4.019059e-07
TCGA-DJ-A3UX-01A-11D-A22D-08	30	19	11	8	3.666667e-01	2	all capture (no interval list)	65505363	11	8	1.679252e-07	1.221274e-07
TCGA-DJ-A3UY-01A-21D-A22D-08	22	10	12	10	5.454545e-01	2	all capture (no interval list)	65505363	0	8	0	1.221274e-07
TCGA-DO-A1JZ-01A-11D-A13W-08	21	9	12	9	5.714286e-01	2	all capture (no interval list)	65505363	0	9	0	1.373933e-07
TCGA-DO-A1K0-01A-11D-A13W-08	40	16	24	12	6.000000e-01	2	all capture (no interval list)	65505363	4	10	6.106370e-08	1.526593e-07
TCGA-DO-A2HM-01B-11D-A22D-08	97	89	8	64	8.247423e-02	1	exome+100bp flanks	34834024	25	62	7.176891e-07	1.779869e-06
TCGA-E3-A3DY-01A-11D-A20C-08	49	33	16	30	3.265306e-01	2	all capture (no interval list)	65505363	3	30	4.579778e-08	4.579778e-07
TCGA-E3-A3DZ-01A-11D-A20C-08	68	37	31	29	4.558824e-01	2	all capture (no interval list)	65505363	7	28	1.068615e-07	4.274459e-07
TCGA-E3-A3E0-01A-11D-A20C-08	43	16	27	10	6.279070e-01	2	all capture (no interval list)	65505363	6	10	9.159555e-08	1.526593e-07
TCGA-E3-A3E1-01A-11D-A20C-08	42	29	13	21	3.095238e-01	2	all capture (no interval list)	65505363	7	19	1.068615e-07	2.900526e-07
TCGA-E3-A3E2-01A-11D-A20C-08	32	16	16	12	5.000000e-01	2	all capture (no interval list)	65505363	3	12	4.579778e-08	1.831911e-07
TCGA-E3-A3E3-01A-11D-A20C-08	72	23	49	20	6.805556e-01	2	all capture (no interval list)	65505363	3	17	4.579778e-08	2.595207e-07
TCGA-E3-A3E5-01A-11D-A20C-08	44	29	15	24	3.409091e-01	2	all capture (no interval list)	65505363	3	24	4.579778e-08	3.663822e-07
TCGA-E8-A242-01A-21D-A16O-08	39	33	6	22	1.538462e-01	1	exome+100bp flanks	34834024	10	20	2.870756e-07	5.741513e-07
TCGA-E8-A2EA-01A-11D-A17V-08	53	43	10	36	1.886792e-01	1	exome+100bp flanks	34834024	7	35	2.009530e-07	1.004765e-06
TCGA-EL-A3CL-01A-11D-A19J-08	17	14	3	10	1.764706e-01	2	all capture (no interval list)	65505363	4	9	6.106370e-08	1.373933e-07
TCGA-EL-A3CM-01A-11D-A19J-08	21	16	5	13	2.380952e-01	1	exome+100bp flanks	34834024	3	13	8.612269e-08	3.731983e-07
TCGA-EL-A3CN-01A-12D-A20C-08	55	35	20	30	3.636364e-01	2	all capture (no interval list)	65505363	5	29	7.632963e-08	4.427118e-07
TCGA-EL-A3CO-01A-11D-A19J-08	14	12	2	11	1.428571e-01	2	all capture (no interval list)	65505363	1	9	1.526593e-08	1.373933e-07
TCGA-EL-A3CP-01A-11D-A19J-08	15	12	3	9	2.000000e-01	2	all capture (no interval list)	65505363	3	6	4.579778e-08	9.159555e-08
TCGA-EL-A3CR-01A-12D-A202-08	55	41	14	33	2.545455e-01	1	exome+100bp flanks	34834024	8	33	2.296605e-07	9.473496e-07
TCGA-EL-A3CS-01A-21D-A19J-08	27	22	5	18	1.851852e-01	1	exome+100bp flanks	34834024	4	17	1.148303e-07	4.880286e-07
TCGA-EL-A3CT-01A-12D-A202-08	103	101	2	73	1.941748e-02	0	coding only	34834024	28	71	8.038118e-07	2.038237e-06
TCGA-EL-A3CU-01A-11D-A19J-08	29	24	5	20	1.724138e-01	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-EL-A3CV-01A-11D-A19J-08	12	9	3	7	2.500000e-01	2	all capture (no interval list)	65505363	2	6	3.053185e-08	9.159555e-08
TCGA-EL-A3CW-01A-11D-A19J-08	20	12	8	8	4.000000e-01	2	all capture (no interval list)	65505363	4	7	6.106370e-08	1.068615e-07
TCGA-EL-A3CX-01A-11D-A19J-08	14	9	5	8	3.571429e-01	2	all capture (no interval list)	65505363	1	7	1.526593e-08	1.068615e-07
TCGA-EL-A3CY-01A-11D-A19J-08	16	8	8	6	5.000000e-01	2	all capture (no interval list)	65505363	2	5	3.053185e-08	7.632963e-08
TCGA-EL-A3CZ-01A-11D-A19J-08	8	6	2	5	2.500000e-01	2	all capture (no interval list)	65505363	1	5	1.526593e-08	7.632963e-08
TCGA-EL-A3D0-01A-12D-A202-08	42	36	6	21	1.428571e-01	1	exome+100bp flanks	34834024	15	20	4.306135e-07	5.741513e-07
TCGA-EL-A3D1-01A-11D-A19J-08	11	8	3	8	2.727273e-01	2	all capture (no interval list)	65505363	0	6	0	9.159555e-08
TCGA-EL-A3D4-01A-11D-A19J-08	17	10	7	5	4.117647e-01	2	all capture (no interval list)	65505363	4	5	6.106370e-08	7.632963e-08
TCGA-EL-A3D5-01A-22D-A202-08	22	15	7	11	3.181818e-01	2	all capture (no interval list)	65505363	4	11	6.106370e-08	1.679252e-07
TCGA-EL-A3D6-01A-12D-A202-08	40	35	5	28	1.250000e-01	1	exome+100bp flanks	34834024	7	28	2.009530e-07	8.038118e-07
TCGA-EL-A3GO-01A-11D-A202-08	17	17	0	16	0	2	all capture (no interval list)	65505363	1	15	1.526593e-08	2.289889e-07
TCGA-EL-A3GP-01A-11D-A202-08	36	28	8	19	2.222222e-01	1	exome+100bp flanks	34834024	9	17	2.583681e-07	4.880286e-07
TCGA-EL-A3GQ-01A-11D-A202-08	25	21	4	17	1.600000e-01	2	all capture (no interval list)	65505363	4	15	6.106370e-08	2.289889e-07
TCGA-EL-A3GR-01A-21D-A202-08	21	16	5	13	2.380952e-01	1	exome+100bp flanks	34834024	3	13	8.612269e-08	3.731983e-07
TCGA-EL-A3GS-01A-11D-A20C-08	51	24	27	21	5.294118e-01	2	all capture (no interval list)	65505363	3	20	4.579778e-08	3.053185e-07
TCGA-EL-A3GU-01A-11D-A21A-08	61	43	18	34	2.950820e-01	1	exome+100bp flanks	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-EL-A3GV-01A-11D-A21A-08	71	34	37	29	5.211268e-01	2	all capture (no interval list)	65505363	5	28	7.632963e-08	4.274459e-07
TCGA-EL-A3GW-01A-11D-A202-08	22	17	5	11	2.272727e-01	1	exome+100bp flanks	34834024	6	11	1.722454e-07	3.157832e-07
TCGA-EL-A3GX-01A-11D-A202-08	26	17	9	12	3.461538e-01	2	all capture (no interval list)	65505363	4	12	6.106370e-08	1.831911e-07
TCGA-EL-A3GY-01A-21D-A202-08	34	30	4	24	1.176471e-01	2	all capture (no interval list)	65505363	6	23	9.159555e-08	3.511163e-07
TCGA-EL-A3GZ-01A-11D-A20C-08	39	18	21	13	5.384615e-01	2	all capture (no interval list)	65505363	5	12	7.632963e-08	1.831911e-07
TCGA-EL-A3H1-01A-11D-A21A-08	59	35	24	26	4.067797e-01	2	all capture (no interval list)	65505363	9	24	1.373933e-07	3.663822e-07
TCGA-EL-A3H2-01A-11D-A20C-08	41	27	14	17	3.414634e-01	2	all capture (no interval list)	65505363	10	17	1.526593e-07	2.595207e-07
TCGA-EL-A3H3-01A-11D-A202-08	6	5	1	4	1.666667e-01	2	all capture (no interval list)	65505363	1	4	1.526593e-08	6.106370e-08
TCGA-EL-A3H4-01A-11D-A202-08	26	16	10	12	3.846154e-01	2	all capture (no interval list)	65505363	4	11	6.106370e-08	1.679252e-07
TCGA-EL-A3H5-01A-11D-A202-08	32	30	2	20	6.250000e-02	2	all capture (no interval list)	65505363	10	17	1.526593e-07	2.595207e-07
TCGA-EL-A3H7-01A-11D-A21A-08	69	38	31	29	4.492754e-01	2	all capture (no interval list)	65505363	9	29	1.373933e-07	4.427118e-07
TCGA-EL-A3H8-01A-11D-A20C-08	46	25	21	18	4.565217e-01	2	all capture (no interval list)	65505363	4	18	6.106370e-08	2.747867e-07
TCGA-EL-A3MW-01A-11D-A20C-08	35	18	17	13	4.857143e-01	2	all capture (no interval list)	65505363	5	13	7.632963e-08	1.984570e-07
TCGA-EL-A3MX-01A-11D-A21A-08	66	46	20	32	3.030303e-01	2	all capture (no interval list)	65505363	13	32	1.984570e-07	4.885096e-07
TCGA-EL-A3MY-01A-11D-A21A-08	54	32	22	28	4.074074e-01	2	all capture (no interval list)	65505363	4	27	6.106370e-08	4.121800e-07
TCGA-EL-A3MZ-01A-11D-A21A-08	67	45	22	38	3.283582e-01	2	all capture (no interval list)	65505363	6	37	9.159555e-08	5.648392e-07
TCGA-EL-A3N2-01A-11D-A20C-08	49	34	15	25	3.061224e-01	2	all capture (no interval list)	65505363	8	25	1.221274e-07	3.816481e-07
TCGA-EL-A3N3-01A-11D-A20C-08	61	38	23	33	3.770492e-01	2	all capture (no interval list)	65505363	5	30	7.632963e-08	4.579778e-07
TCGA-EL-A3T0-01A-22D-A22D-08	52	39	13	31	2.500000e-01	1	exome+100bp flanks	34834024	8	29	2.296605e-07	8.325194e-07
TCGA-EL-A3T1-01A-11D-A22D-08	41	32	9	23	2.195122e-01	1	exome+100bp flanks	34834024	9	23	2.583681e-07	6.602740e-07
TCGA-EL-A3T2-01A-11D-A22D-08	40	36	4	28	1.000000e-01	2	all capture (no interval list)	65505363	8	23	1.221274e-07	3.511163e-07
TCGA-EL-A3T3-01A-11D-A22D-08	51	40	11	30	2.156863e-01	1	exome+100bp flanks	34834024	10	30	2.870756e-07	8.612269e-07
TCGA-EL-A3T6-01A-11D-A21Z-08	21	13	8	11	3.809524e-01	2	all capture (no interval list)	65505363	2	9	3.053185e-08	1.373933e-07
TCGA-EL-A3T7-01A-11D-A22D-08	33	25	8	18	2.424242e-01	1	exome+100bp flanks	34834024	6	18	1.722454e-07	5.167362e-07
TCGA-EL-A3T8-01A-21D-A22D-08	26	18	8	15	3.076923e-01	2	all capture (no interval list)	65505363	2	14	3.053185e-08	2.137230e-07
TCGA-EL-A3T9-01A-21D-A22D-08	45	38	7	20	1.555556e-01	1	exome+100bp flanks	34834024	18	18	5.167362e-07	5.167362e-07
TCGA-EL-A3TA-01A-12D-A22D-08	24	14	10	12	4.166667e-01	2	all capture (no interval list)	65505363	2	11	3.053185e-08	1.679252e-07
TCGA-EL-A3TB-01A-11D-A22D-08	57	32	25	25	4.385965e-01	2	all capture (no interval list)	65505363	7	24	1.068615e-07	3.663822e-07
TCGA-EM-A1CS-01A-11D-A13W-08	22	17	5	16	2.272727e-01	1	exome+100bp flanks	34834024	1	15	2.870756e-08	4.306135e-07
TCGA-EM-A1CT-01A-11D-A13W-08	44	31	13	18	2.954545e-01	1	exome+100bp flanks	34834024	13	18	3.731983e-07	5.167362e-07
TCGA-EM-A1CU-01A-11D-A13W-08	44	25	19	22	4.318182e-01	2	all capture (no interval list)	65505363	3	21	4.579778e-08	3.205844e-07
TCGA-EM-A1CV-01A-11D-A13W-08	37	16	21	10	5.675676e-01	2	all capture (no interval list)	65505363	5	8	7.632963e-08	1.221274e-07
TCGA-EM-A1CW-01A-21D-A13W-08	28	20	8	15	2.857143e-01	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-EM-A1YA-01A-11D-A14W-08	18	13	5	11	2.777778e-01	1	exome+100bp flanks	34834024	2	11	5.741513e-08	3.157832e-07
TCGA-EM-A1YB-01A-11D-A14W-08	60	54	6	39	1.000000e-01	1	exome+100bp flanks	34834024	15	36	4.306135e-07	1.033472e-06
TCGA-EM-A1YC-01A-11D-A14W-08	26	23	3	14	1.153846e-01	2	all capture (no interval list)	65505363	9	14	1.373933e-07	2.137230e-07
TCGA-EM-A1YD-01A-11D-A14W-08	11	9	2	5	1.818182e-01	2	all capture (no interval list)	65505363	3	5	4.579778e-08	7.632963e-08
TCGA-EM-A1YE-01A-11D-A14W-08	19	16	3	13	1.578947e-01	2	all capture (no interval list)	65505363	3	12	4.579778e-08	1.831911e-07
TCGA-EM-A22I-01A-11D-A17V-08	16	14	2	10	1.250000e-01	2	all capture (no interval list)	65505363	4	9	6.106370e-08	1.373933e-07
TCGA-EM-A22J-01A-11D-A17V-08	26	22	4	17	1.538462e-01	2	all capture (no interval list)	65505363	5	16	7.632963e-08	2.442548e-07
TCGA-EM-A22K-01A-11D-A17V-08	24	18	6	16	2.500000e-01	1	exome+100bp flanks	34834024	2	15	5.741513e-08	4.306135e-07
TCGA-EM-A22L-01A-11D-A17V-08	18	11	7	11	3.888889e-01	2	all capture (no interval list)	65505363	0	10	0	1.526593e-07
TCGA-EM-A22M-01A-11D-A17V-08	24	18	6	13	2.500000e-01	1	exome+100bp flanks	34834024	5	13	1.435378e-07	3.731983e-07
TCGA-EM-A22N-01A-11D-A17V-08	15	11	4	8	2.666667e-01	2	all capture (no interval list)	65505363	3	7	4.579778e-08	1.068615e-07
TCGA-EM-A22O-01A-11D-A17V-08	42	41	1	35	2.380952e-02	2	all capture (no interval list)	65505363	6	35	9.159555e-08	5.343074e-07
TCGA-EM-A22P-01A-11D-A19J-08	24	17	7	11	2.916667e-01	1	exome+100bp flanks	34834024	5	11	1.435378e-07	3.157832e-07
TCGA-EM-A22Q-01A-11D-A17V-08	16	13	3	9	1.875000e-01	2	all capture (no interval list)	65505363	4	9	6.106370e-08	1.373933e-07
TCGA-EM-A2CJ-01A-11D-A17V-08	24	18	6	15	2.500000e-01	1	exome+100bp flanks	34834024	3	15	8.612269e-08	4.306135e-07
TCGA-EM-A2CK-01A-11D-A17V-08	19	11	8	11	4.210526e-01	2	all capture (no interval list)	65505363	0	11	0	1.679252e-07
TCGA-EM-A2CL-01A-11D-A17V-08	33	11	22	9	6.666667e-01	2	all capture (no interval list)	65505363	2	9	3.053185e-08	1.373933e-07
TCGA-EM-A2CM-01A-11D-A17V-08	34	27	7	20	2.058824e-01	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-EM-A2CN-01A-11D-A19J-08	37	24	13	21	3.513514e-01	2	all capture (no interval list)	65505363	3	18	4.579778e-08	2.747867e-07
TCGA-EM-A2CO-01A-11D-A19J-08	27	25	2	18	7.407407e-02	2	all capture (no interval list)	65505363	7	18	1.068615e-07	2.747867e-07
TCGA-EM-A2CP-01A-11D-A17V-08	22	13	9	11	4.090909e-01	2	all capture (no interval list)	65505363	2	9	3.053185e-08	1.373933e-07
TCGA-EM-A2CQ-01A-11D-A17V-08	14	10	4	7	2.857143e-01	2	all capture (no interval list)	65505363	3	6	4.579778e-08	9.159555e-08
TCGA-EM-A2CR-01A-11D-A17V-08	25	18	7	14	2.800000e-01	1	exome+100bp flanks	34834024	4	13	1.148303e-07	3.731983e-07
TCGA-EM-A2CT-01A-11D-A17V-08	18	13	5	13	2.777778e-01	1	exome+100bp flanks	34834024	0	12	0	3.444908e-07
TCGA-EM-A2CU-01A-12D-A17V-08	22	10	12	6	5.454545e-01	2	all capture (no interval list)	65505363	4	6	6.106370e-08	9.159555e-08
TCGA-EM-A2OV-01A-11D-A202-08	34	29	5	25	1.470588e-01	1	exome+100bp flanks	34834024	4	25	1.148303e-07	7.176891e-07
TCGA-EM-A2OW-01A-11D-A202-08	25	22	3	14	1.200000e-01	2	all capture (no interval list)	65505363	7	14	1.068615e-07	2.137230e-07
TCGA-EM-A2OX-01A-11D-A202-08	30	12	18	6	6.000000e-01	2	all capture (no interval list)	65505363	5	4	7.632963e-08	6.106370e-08
TCGA-EM-A2OY-01A-11D-A202-08	25	18	7	17	2.800000e-01	1	exome+100bp flanks	34834024	1	17	2.870756e-08	4.880286e-07
TCGA-EM-A2P0-01A-11D-A202-08	12	8	4	8	3.333333e-01	2	all capture (no interval list)	65505363	0	8	0	1.221274e-07
TCGA-EM-A2P1-01A-11D-A202-08	13	10	3	6	2.307692e-01	2	all capture (no interval list)	65505363	3	5	4.579778e-08	7.632963e-08
TCGA-EM-A2P2-01A-11D-A202-08	26	26	0	24	0	2	all capture (no interval list)	65505363	2	24	3.053185e-08	3.663822e-07
TCGA-EM-A2P3-01A-11D-A202-08	21	15	6	11	2.857143e-01	1	exome+100bp flanks	34834024	4	11	1.148303e-07	3.157832e-07
TCGA-EM-A3AI-01A-11D-A202-08	25	21	4	18	1.600000e-01	2	all capture (no interval list)	65505363	3	17	4.579778e-08	2.595207e-07
TCGA-EM-A3AJ-01A-11D-A202-08	10	8	2	6	2.000000e-01	2	all capture (no interval list)	65505363	2	6	3.053185e-08	9.159555e-08
TCGA-EM-A3AK-01A-11D-A202-08	21	19	2	15	9.523810e-02	2	all capture (no interval list)	65505363	4	14	6.106370e-08	2.137230e-07
TCGA-EM-A3AL-01A-11D-A202-08	38	27	11	20	2.894737e-01	1	exome+100bp flanks	34834024	7	20	2.009530e-07	5.741513e-07
TCGA-EM-A3AN-01A-11D-A202-08	22	13	9	11	4.090909e-01	2	all capture (no interval list)	65505363	2	10	3.053185e-08	1.526593e-07
TCGA-EM-A3AO-01A-11D-A202-08	19	16	3	14	1.578947e-01	2	all capture (no interval list)	65505363	2	12	3.053185e-08	1.831911e-07
TCGA-EM-A3AP-01A-12D-A20C-08	90	58	32	51	3.555556e-01	2	all capture (no interval list)	65505363	7	47	1.068615e-07	7.174985e-07
TCGA-EM-A3AQ-01A-11D-A20C-08	47	27	20	20	4.255319e-01	2	all capture (no interval list)	65505363	7	20	1.068615e-07	3.053185e-07
TCGA-EM-A3AR-01A-12D-A20C-08	52	16	36	13	6.923077e-01	2	all capture (no interval list)	65505363	3	11	4.579778e-08	1.679252e-07
TCGA-EM-A3FJ-01A-11D-A21A-08	31	8	23	7	7.419355e-01	2	all capture (no interval list)	65505363	1	6	1.526593e-08	9.159555e-08
TCGA-EM-A3FK-01A-11D-A21A-08	59	18	41	14	6.949153e-01	2	all capture (no interval list)	65505363	3	13	4.579778e-08	1.984570e-07
TCGA-EM-A3FL-01A-11D-A21A-08	49	27	22	16	4.489796e-01	2	all capture (no interval list)	65505363	11	15	1.679252e-07	2.289889e-07
TCGA-EM-A3FM-01A-11D-A21A-08	71	29	42	26	5.915493e-01	2	all capture (no interval list)	65505363	3	24	4.579778e-08	3.663822e-07
TCGA-EM-A3FN-01A-11D-A21A-08	55	35	20	27	3.636364e-01	2	all capture (no interval list)	65505363	8	27	1.221274e-07	4.121800e-07
TCGA-EM-A3FO-01A-11D-A21A-08	37	18	19	14	5.135135e-01	2	all capture (no interval list)	65505363	4	14	6.106370e-08	2.137230e-07
TCGA-EM-A3FP-01A-11D-A21A-08	49	21	28	18	5.714286e-01	2	all capture (no interval list)	65505363	3	17	4.579778e-08	2.595207e-07
TCGA-EM-A3FQ-01A-11D-A21A-08	30	14	16	10	5.333333e-01	2	all capture (no interval list)	65505363	3	10	4.579778e-08	1.526593e-07
TCGA-EM-A3FR-01A-11D-A21Z-08	37	30	7	27	1.891892e-01	1	exome+100bp flanks	34834024	3	27	8.612269e-08	7.751042e-07
TCGA-EM-A3O3-01A-11D-A21Z-08	62	51	11	38	1.774194e-01	1	exome+100bp flanks	34834024	13	38	3.731983e-07	1.090887e-06
TCGA-EM-A3O6-01A-11D-A21Z-08	27	19	8	15	2.962963e-01	1	exome+100bp flanks	34834024	4	15	1.148303e-07	4.306135e-07
TCGA-EM-A3O7-01A-11D-A21Z-08	33	26	7	18	2.121212e-01	1	exome+100bp flanks	34834024	8	16	2.296605e-07	4.593210e-07
TCGA-EM-A3O8-01A-11D-A21Z-08	26	14	12	11	4.615385e-01	2	all capture (no interval list)	65505363	3	11	4.579778e-08	1.679252e-07
TCGA-EM-A3O9-01A-11D-A21Z-08	47	26	21	25	4.468085e-01	2	all capture (no interval list)	65505363	1	23	1.526593e-08	3.511163e-07
TCGA-EM-A3OA-01A-11D-A21Z-08	40	29	11	18	2.750000e-01	1	exome+100bp flanks	34834024	11	18	3.157832e-07	5.167362e-07
TCGA-EM-A3OB-01A-11D-A21Z-08	31	23	8	16	2.580645e-01	1	exome+100bp flanks	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-ET-A25G-01A-11D-A16O-08	18	12	6	9	3.333333e-01	2	all capture (no interval list)	65505363	3	9	4.579778e-08	1.373933e-07
TCGA-ET-A25I-01A-11D-A16O-08	27	21	6	14	2.222222e-01	1	exome+100bp flanks	34834024	7	14	2.009530e-07	4.019059e-07
TCGA-ET-A25J-01A-11D-A16O-08	19	13	6	9	3.157895e-01	2	all capture (no interval list)	65505363	4	9	6.106370e-08	1.373933e-07
TCGA-ET-A25K-01A-11D-A16O-08	12	12	0	9	0	2	all capture (no interval list)	65505363	3	9	4.579778e-08	1.373933e-07
TCGA-ET-A25O-01A-11D-A17V-08	25	16	9	15	3.600000e-01	2	all capture (no interval list)	65505363	1	14	1.526593e-08	2.137230e-07
TCGA-ET-A25R-01A-11D-A17V-08	21	16	5	11	2.380952e-01	1	exome+100bp flanks	34834024	4	9	1.148303e-07	2.583681e-07
TCGA-ET-A2MY-01A-11D-A18F-08	83	74	9	60	1.084337e-01	1	exome+100bp flanks	34834024	14	58	4.019059e-07	1.665039e-06
TCGA-ET-A2MZ-01A-12D-A19J-08	11	7	4	6	3.636364e-01	2	all capture (no interval list)	65505363	1	5	1.526593e-08	7.632963e-08
TCGA-ET-A2N0-01A-11D-A18F-08	23	19	4	15	1.739130e-01	2	all capture (no interval list)	65505363	4	13	6.106370e-08	1.984570e-07
TCGA-ET-A2N1-01A-11D-A18F-08	18	14	4	11	2.222222e-01	2	all capture (no interval list)	65505363	3	11	4.579778e-08	1.679252e-07
TCGA-ET-A2N4-01A-12D-A19J-08	20	17	3	12	1.500000e-01	2	all capture (no interval list)	65505363	5	11	7.632963e-08	1.679252e-07
TCGA-ET-A2N5-01A-11D-A18F-08	24	15	9	14	3.750000e-01	2	all capture (no interval list)	65505363	1	14	1.526593e-08	2.137230e-07
TCGA-ET-A39I-01A-11D-A19J-08	20	15	5	12	2.500000e-01	1	exome+100bp flanks	34834024	3	12	8.612269e-08	3.444908e-07
TCGA-ET-A39J-01A-11D-A19J-08	18	12	6	11	3.333333e-01	2	all capture (no interval list)	65505363	1	10	1.526593e-08	1.526593e-07
TCGA-ET-A39K-01A-11D-A19J-08	14	11	3	9	2.142857e-01	2	all capture (no interval list)	65505363	2	9	3.053185e-08	1.373933e-07
TCGA-ET-A39L-01A-12D-A19J-08	10	5	5	4	5.000000e-01	2	all capture (no interval list)	65505363	1	3	1.526593e-08	4.579778e-08
TCGA-ET-A39M-01A-11D-A19J-08	63	49	14	34	2.222222e-01	1	exome+100bp flanks	34834024	14	33	4.019059e-07	9.473496e-07
TCGA-ET-A39N-01A-11D-A19J-08	18	13	5	11	2.777778e-01	1	exome+100bp flanks	34834024	2	10	5.741513e-08	2.870756e-07
TCGA-ET-A39O-01A-11D-A19J-08	19	16	3	11	1.578947e-01	2	all capture (no interval list)	65505363	5	11	7.632963e-08	1.679252e-07
TCGA-ET-A39P-01A-21D-A19J-08	23	20	3	15	1.304348e-01	2	all capture (no interval list)	65505363	4	14	6.106370e-08	2.137230e-07
TCGA-ET-A39R-01A-11D-A19J-08	8	6	2	5	2.500000e-01	2	all capture (no interval list)	65505363	1	5	1.526593e-08	7.632963e-08
TCGA-ET-A39S-01A-11D-A19J-08	13	12	1	8	7.692308e-02	2	all capture (no interval list)	65505363	3	8	4.579778e-08	1.221274e-07
TCGA-ET-A39T-01A-11D-A19J-08	21	16	5	12	2.380952e-01	1	exome+100bp flanks	34834024	4	12	1.148303e-07	3.444908e-07
TCGA-ET-A3BN-01A-11D-A19J-08	14	11	3	9	2.142857e-01	2	all capture (no interval list)	65505363	2	8	3.053185e-08	1.221274e-07
TCGA-ET-A3BO-01A-11D-A19J-08	13	10	3	9	2.307692e-01	2	all capture (no interval list)	65505363	1	6	1.526593e-08	9.159555e-08
TCGA-ET-A3BP-01A-21D-A19J-08	7	6	1	5	1.428571e-01	2	all capture (no interval list)	65505363	1	4	1.526593e-08	6.106370e-08
TCGA-ET-A3BQ-01B-11D-A202-08	32	20	12	17	3.750000e-01	2	all capture (no interval list)	65505363	3	17	4.579778e-08	2.595207e-07
TCGA-ET-A3BS-01A-11D-A202-08	27	14	13	9	4.814815e-01	2	all capture (no interval list)	65505363	5	8	7.632963e-08	1.221274e-07
TCGA-ET-A3BT-01A-11D-A19J-08	29	24	5	20	1.724138e-01	1	exome+100bp flanks	34834024	4	19	1.148303e-07	5.454437e-07
TCGA-ET-A3BU-01A-11D-A19J-08	16	10	6	7	3.750000e-01	2	all capture (no interval list)	65505363	3	6	4.579778e-08	9.159555e-08
TCGA-ET-A3BV-01A-11D-A19J-08	37	34	3	25	8.108108e-02	2	all capture (no interval list)	65505363	9	25	1.373933e-07	3.816481e-07
TCGA-ET-A3BW-01A-11D-A19J-08	15	10	5	6	3.333333e-01	2	all capture (no interval list)	65505363	4	5	6.106370e-08	7.632963e-08
TCGA-ET-A3BX-01A-11D-A19J-08	12	9	3	9	2.500000e-01	2	all capture (no interval list)	65505363	0	9	0	1.373933e-07
TCGA-ET-A3DO-01A-11D-A19J-08	25	21	4	17	1.600000e-01	2	all capture (no interval list)	65505363	3	17	4.579778e-08	2.595207e-07
TCGA-ET-A3DP-01A-11D-A21A-08	31	19	12	14	3.870968e-01	2	all capture (no interval list)	65505363	5	14	7.632963e-08	2.137230e-07
TCGA-ET-A3DQ-01A-11D-A19J-08	8	5	3	3	3.750000e-01	2	all capture (no interval list)	65505363	2	3	3.053185e-08	4.579778e-08
TCGA-ET-A3DR-01A-11D-A19J-08	23	20	3	16	1.304348e-01	2	all capture (no interval list)	65505363	4	16	6.106370e-08	2.442548e-07
TCGA-ET-A3DS-01A-11D-A19J-08	20	12	8	7	4.000000e-01	2	all capture (no interval list)	65505363	5	7	7.632963e-08	1.068615e-07
TCGA-ET-A3DT-01A-11D-A19J-08	6	4	2	2	3.333333e-01	2	all capture (no interval list)	65505363	2	2	3.053185e-08	3.053185e-08
TCGA-ET-A3DU-01A-11D-A19J-08	27	22	5	17	1.851852e-01	1	exome+100bp flanks	34834024	5	15	1.435378e-07	4.306135e-07
TCGA-ET-A3DV-01A-12D-A202-08	26	21	5	13	1.923077e-01	1	exome+100bp flanks	34834024	8	13	2.296605e-07	3.731983e-07
TCGA-ET-A3DW-01A-11D-A19J-08	23	20	3	16	1.304348e-01	2	all capture (no interval list)	65505363	4	15	6.106370e-08	2.289889e-07
TCGA-FE-A22Z-01A-11D-A17V-08	31	26	5	20	1.612903e-01	1	exome+100bp flanks	34834024	6	19	1.722454e-07	5.454437e-07
TCGA-FE-A230-01A-11D-A14W-08	14	8	6	6	4.285714e-01	2	all capture (no interval list)	65505363	2	6	3.053185e-08	9.159555e-08
TCGA-FE-A231-01A-11D-A14W-08	27	22	5	15	1.851852e-01	1	exome+100bp flanks	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-FE-A232-01A-11D-A14W-08	18	16	2	14	1.111111e-01	2	all capture (no interval list)	65505363	2	13	3.053185e-08	1.984570e-07
TCGA-FE-A233-01A-11D-A14W-08	17	13	4	10	2.352941e-01	2	all capture (no interval list)	65505363	3	8	4.579778e-08	1.221274e-07
TCGA-FE-A234-01A-11D-A14W-08	21	16	5	14	2.380952e-01	1	exome+100bp flanks	34834024	2	13	5.741513e-08	3.731983e-07
TCGA-FE-A235-01A-11D-A16O-08	26	21	5	15	1.923077e-01	1	exome+100bp flanks	34834024	6	14	1.722454e-07	4.019059e-07
TCGA-FE-A236-01A-11D-A16O-08	20	11	9	9	4.500000e-01	2	all capture (no interval list)	65505363	2	9	3.053185e-08	1.373933e-07
TCGA-FE-A237-01A-11D-A16O-08	14	10	4	9	2.857143e-01	2	all capture (no interval list)	65505363	1	9	1.526593e-08	1.373933e-07
TCGA-FE-A23A-01A-11D-A17V-08	18	13	5	10	2.777778e-01	1	exome+100bp flanks	34834024	3	8	8.612269e-08	2.296605e-07
TCGA-FE-A3PB-01A-11D-A21Z-08	37	8	29	7	7.837838e-01	2	all capture (no interval list)	65505363	1	6	1.526593e-08	9.159555e-08
TCGA-FE-A3PC-01A-11D-A21Z-08	47	37	10	27	2.127660e-01	1	exome+100bp flanks	34834024	10	27	2.870756e-07	7.751042e-07
TCGA-FE-A3PD-01A-11D-A21Z-08	38	28	10	22	2.631579e-01	1	exome+100bp flanks	34834024	5	22	1.435378e-07	6.315664e-07
TCGA-FK-A3S3-01A-11D-A22D-08	29	24	5	17	1.724138e-01	1	exome+100bp flanks	34834024	7	15	2.009530e-07	4.306135e-07
TCGA-FK-A3SB-01A-11D-A22D-08	23	15	8	11	3.478261e-01	2	all capture (no interval list)	65505363	4	11	6.106370e-08	1.679252e-07
TCGA-FK-A3SD-01A-11D-A22D-08	52	41	11	30	2.115385e-01	1	exome+100bp flanks	34834024	11	28	3.157832e-07	8.038118e-07
TCGA-FK-A3SE-01A-11D-A22D-08	29	19	10	14	3.448276e-01	2	all capture (no interval list)	65505363	5	14	7.632963e-08	2.137230e-07
TCGA-FK-A3SG-01A-11D-A22D-08	31	19	12	15	3.870968e-01	2	all capture (no interval list)	65505363	4	15	6.106370e-08	2.289889e-07
TCGA-FK-A3SH-01A-11D-A22D-08	42	36	6	25	1.428571e-01	1	exome+100bp flanks	34834024	11	25	3.157832e-07	7.176891e-07
TCGA-FY-A2QD-01A-11D-A19J-08	19	8	11	6	5.789474e-01	2	all capture (no interval list)	65505363	2	6	3.053185e-08	9.159555e-08
TCGA-FY-A3BL-01A-11D-A19J-08	10	7	3	6	3.000000e-01	2	all capture (no interval list)	65505363	1	5	1.526593e-08	7.632963e-08
TCGA-FY-A3I4-01A-11D-A21A-08	47	25	22	18	4.680851e-01	2	all capture (no interval list)	65505363	7	16	1.068615e-07	2.442548e-07
TCGA-FY-A3I5-01B-11D-A21Z-08	32	27	5	19	1.562500e-01	1	exome+100bp flanks	34834024	6	19	1.722454e-07	5.454437e-07
TCGA-FY-A3NM-01A-11D-A21A-08	48	32	16	25	3.333333e-01	2	all capture (no interval list)	65505363	7	21	1.068615e-07	3.205844e-07
TCGA-FY-A3NN-01A-11D-A21A-08	45	24	21	18	4.666667e-01	2	all capture (no interval list)	65505363	6	17	9.159555e-08	2.595207e-07
TCGA-FY-A3NP-01A-11D-A21A-08	45	14	31	13	6.888889e-01	2	all capture (no interval list)	65505363	1	13	1.526593e-08	1.984570e-07
TCGA-FY-A3ON-01A-11D-A21Z-08	24	16	8	15	3.333333e-01	2	all capture (no interval list)	65505363	1	14	1.526593e-08	2.137230e-07
TCGA-FY-A3R6-01A-11D-A21Z-08	39	23	16	16	4.102564e-01	2	all capture (no interval list)	65505363	7	15	1.068615e-07	2.289889e-07
TCGA-FY-A3R7-01A-11D-A21Z-08	44	33	11	29	2.500000e-01	1	exome+100bp flanks	34834024	3	27	8.612269e-08	7.751042e-07
TCGA-FY-A3R8-01A-11D-A21Z-08	62	21	41	17	6.612903e-01	2	all capture (no interval list)	65505363	4	15	6.106370e-08	2.289889e-07
TCGA-FY-A3R9-01A-11D-A21Z-08	44	34	10	25	2.272727e-01	1	exome+100bp flanks	34834024	9	24	2.583681e-07	6.889816e-07
TCGA-FY-A3RA-01A-11D-A21Z-08	25	14	11	14	4.400000e-01	2	all capture (no interval list)	65505363	0	13	0	1.984570e-07
TCGA-FY-A3W9-01A-11D-A22D-08	60	30	30	21	5.000000e-01	2	all capture (no interval list)	65505363	9	20	1.373933e-07	3.053185e-07
TCGA-FY-A3WA-01A-11D-A22D-08	34	19	15	14	4.411765e-01	2	all capture (no interval list)	65505363	5	13	7.632963e-08	1.984570e-07
TCGA-GE-A2C6-01A-11D-A17V-08	13	7	6	4	4.615385e-01	2	all capture (no interval list)	65505363	2	4	3.053185e-08	6.106370e-08
TCGA-H2-A26U-01A-11D-A16O-08	39	11	28	9	7.179487e-01	2	all capture (no interval list)	65505363	2	9	3.053185e-08	1.373933e-07
TCGA-H2-A2K9-01A-11D-A17V-08	20	16	4	14	2.000000e-01	2	all capture (no interval list)	65505363	1	14	1.526593e-08	2.137230e-07
TCGA-H2-A3RH-01A-11D-A21Z-08	44	30	14	24	3.181818e-01	2	all capture (no interval list)	65505363	6	24	9.159555e-08	3.663822e-07
TCGA-H2-A3RI-01A-11D-A21Z-08	21	15	6	13	2.857143e-01	1	exome+100bp flanks	34834024	2	13	5.741513e-08	3.731983e-07
TCGA-IM-A3EB-01A-11D-A202-08	24	19	5	17	2.083333e-01	1	exome+100bp flanks	34834024	2	17	5.741513e-08	4.880286e-07
TCGA-IM-A3ED-01A-11D-A202-08	23	14	9	7	3.913043e-01	2	all capture (no interval list)	65505363	7	7	1.068615e-07	1.068615e-07
TCGA-IM-A3U2-01A-21D-A22D-08	83	71	12	52	1.445783e-01	1	exome+100bp flanks	34834024	18	50	5.167362e-07	1.435378e-06
TCGA-IM-A3U3-01A-11D-A22D-08	45	37	8	31	1.777778e-01	1	exome+100bp flanks	34834024	6	28	1.722454e-07	8.038118e-07
TCGA-J8-A3NZ-01A-11D-A21A-08	52	32	20	24	3.846154e-01	2	all capture (no interval list)	65505363	6	22	9.159555e-08	3.358504e-07
TCGA-J8-A3O0-01A-11D-A21A-08	40	20	20	14	5.000000e-01	2	all capture (no interval list)	65505363	6	14	9.159555e-08	2.137230e-07
TCGA-J8-A3O1-01A-11D-A21A-08	63	31	32	25	5.079365e-01	2	all capture (no interval list)	65505363	6	25	9.159555e-08	3.816481e-07