Broad GDAC Analyses Status
analyses__2013_04_21__brca Run for Tumor Type: BRCA
Tumor
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNAseq
miR
miRseq
RPPA
MAF
BRCA
967
878
921
0
928
526
842
0
896
408
772
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
TP-Aggregate_Gene_Status
0
0
0
1
0
2
TP-Aggregate_Molecular_Subtype_Clusters
0
0
0
1
0
3
TP-CoMut1.5
0
0
0
1
0
4
TP-CoMut2.0
0
0
0
1
0
5
TP-CoMutCV
0
0
0
1
0
6
TP-CopyNumber_Clustering_CNMF
0
0
0
1
0
7
TP-CopyNumber_Gistic2
0
0
0
1
0
8
TP-CopyNumber_Gistic2_Analysis
0
0
0
1
0
9
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
10
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
1
0
11
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
12
TP-Correlate_Clinical_vs_Methylation
0
0
0
1
0
13
TP-Correlate_Clinical_vs_miR
1
0
0
0
0
14
TP-Correlate_Clinical_vs_miRseq
0
0
0
1
0
15
TP-Correlate_Clinical_vs_Molecular_Subtypes
0
0
0
1
0
16
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
17
TP-Correlate_Clinical_vs_mRNAseq
0
0
0
1
0
18
TP-Correlate_Clinical_vs_Mutation
0
0
0
1
0
19
TP-Correlate_Clinical_vs_RPPA
0
0
0
1
0
20
TP-Correlate_CopyNumber_vs_miR
1
0
0
0
0
21
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
1
0
22
TP-Correlate_CopyNumber_vs_mRNAseq
0
0
0
1
0
23
TP-Correlate_Methylation_vs_mRNA
0
0
0
1
0
24
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
0
1
0
25
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
0
1
0
26
TP-Correlate_molecularSubtype_vs_Mutation
0
0
0
1
0
27
TP-GenerateStickFigures1.5
0
0
0
1
0
28
TP-GenerateStickFigures2.0
0
0
0
1
0
29
TP-GenerateStickFiguresCV
0
0
0
1
0
30
TP-Hotnet
0
0
0
1
0
31
TP-Hotnet_preprocess
0
0
0
1
0
32
TP-Methylation_Clustering_CNMF
0
0
0
1
0
33
TP-Methylation_Preprocess
0
0
0
1
0
34
TP-miR_Clustering_CNMF
1
0
0
0
0
35
TP-miR_Clustering_Consensus
1
0
0
0
0
36
TP-miR_FindDirectTargets
1
0
0
0
0
37
TP-miRseq_Clustering_CNMF
0
0
0
1
0
38
TP-miRseq_Clustering_Consensus
0
0
0
1
0
39
TP-miRseq_Preprocess
0
0
0
1
0
40
TP-mRNA_Clustering_CNMF
0
0
0
1
0
41
TP-mRNA_Clustering_Consensus
0
0
0
1
0
42
TP-mRNA_Preprocess_Median
0
0
0
1
0
43
TP-mRNAseq_Clustering_CNMF
0
0
0
1
0
44
TP-mRNAseq_Clustering_Consensus
0
0
0
1
0
45
TP-Mutation_Assessor
0
0
0
1
0
46
TP-MutSigNozzleReport1.5
0
0
0
1
0
47
TP-MutSigNozzleReport2.0
0
0
0
1
0
48
TP-MutSigNozzleReportCV
0
0
0
1
0
49
TP-MutSigPreprocess1.5
0
0
0
1
0
50
TP-MutSigPreprocess2.0
0
0
0
1
0
51
TP-MutSigRun1.5
0
0
0
1
0
52
TP-MutSigRun2.0
0
0
0
1
0
53
TP-MutSigRunCV
0
0
0
1
0
54
TP-Paradigm_mRNA
0
0
0
1
0
55
TP-Paradigm_mRNA_And_CopyNumber
0
0
0
1
0
56
TP-Paradigm_Prepare_mRNA
0
0
0
1
0
57
TP-Paradigm_Prepare_mRNA_And_Copy_Number
0
0
0
1
0
58
TP-Paradigm_Prepare_RNASeq
0
0
0
1
0
59
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
0
0
0
1
0
60
TP-Paradigm_Preprocess_mRNA
0
0
0
1
0
61
TP-ParadigmPreprocess_mRNA
0
0
0
1
0
62
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
0
0
0
1
0
63
TP-Paradigm_Preprocess_RNASeq
0
0
0
1
0
64
TP-ParadigmPreprocess_RNASeq
0
0
0
1
0
65
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
66
TP-Paradigm_Report_Preprocess_mRNA
0
0
0
1
0
67
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
0
0
0
1
0
68
TP-Paradigm_Report_Preprocess_RNASeq
0
0
0
1
0
69
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
0
0
0
1
0
70
TP-Paradigm_RNASeq
0
0
0
1
0
71
TP-Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
72
TP-Pathway_FindEnrichedGenes
0
0
0
1
0
73
TP-Pathway_Hotnet
0
0
0
1
0
74
TP-Pathway_Paradigm_mRNA
0
0
0
1
0
75
TP-Pathway_Paradigm_mRNA_And_Copy_Number
0
0
0
1
0
76
TP-Pathway_Paradigm_RNASeq
0
0
0
1
0
77
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
0
0
0
1
0
78
TP-ProcessCoverageForMutSig1.5
0
0
0
1
0
79
TP-ProcessCoverageForMutSig2.0
0
0
0
1
0
80
TP-RPPA_Clustering_CNMF
0
0
0
1
0
81
TP-RPPA_Clustering_Consensus
0
0
0
1
0
Total
5
0
0
76
0
This table generated on Sat May 25 09:49:17 2013