Broad GDAC Analyses Status
analyses__2013_04_21__brca Run for Tumor Type: BRCA

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
BRCA96787892109285268420896408772

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-CoMut1.500010
4TP-CoMut2.000010
5TP-CoMutCV00010
6TP-CopyNumber_Clustering_CNMF00010
7TP-CopyNumber_Gistic200010
8TP-CopyNumber_Gistic2_Analysis00010
9TP-CopyNumber_Gistic2_Postprocess_Focal00010
10TP-Correlate_Clinical_vs_CopyNumber_Arm00010
11TP-Correlate_Clinical_vs_CopyNumber_Focal00010
12TP-Correlate_Clinical_vs_Methylation00010
13TP-Correlate_Clinical_vs_miR10000
14TP-Correlate_Clinical_vs_miRseq00010
15TP-Correlate_Clinical_vs_Molecular_Subtypes00010
16TP-Correlate_Clinical_vs_mRNA00010
17TP-Correlate_Clinical_vs_mRNAseq00010
18TP-Correlate_Clinical_vs_Mutation00010
19TP-Correlate_Clinical_vs_RPPA00010
20TP-Correlate_CopyNumber_vs_miR10000
21TP-Correlate_CopyNumber_vs_mRNA00010
22TP-Correlate_CopyNumber_vs_mRNAseq00010
23TP-Correlate_Methylation_vs_mRNA00010
24TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
25TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
26TP-Correlate_molecularSubtype_vs_Mutation00010
27TP-GenerateStickFigures1.500010
28TP-GenerateStickFigures2.000010
29TP-GenerateStickFiguresCV00010
30TP-Hotnet00010
31TP-Hotnet_preprocess00010
32TP-Methylation_Clustering_CNMF00010
33TP-Methylation_Preprocess00010
34TP-miR_Clustering_CNMF10000
35TP-miR_Clustering_Consensus10000
36TP-miR_FindDirectTargets10000
37TP-miRseq_Clustering_CNMF00010
38TP-miRseq_Clustering_Consensus00010
39TP-miRseq_Preprocess00010
40TP-mRNA_Clustering_CNMF00010
41TP-mRNA_Clustering_Consensus00010
42TP-mRNA_Preprocess_Median00010
43TP-mRNAseq_Clustering_CNMF00010
44TP-mRNAseq_Clustering_Consensus00010
45TP-Mutation_Assessor00010
46TP-MutSigNozzleReport1.500010
47TP-MutSigNozzleReport2.000010
48TP-MutSigNozzleReportCV00010
49TP-MutSigPreprocess1.500010
50TP-MutSigPreprocess2.000010
51TP-MutSigRun1.500010
52TP-MutSigRun2.000010
53TP-MutSigRunCV00010
54TP-Paradigm_mRNA00010
55TP-Paradigm_mRNA_And_CopyNumber00010
56TP-Paradigm_Prepare_mRNA00010
57TP-Paradigm_Prepare_mRNA_And_Copy_Number00010
58TP-Paradigm_Prepare_RNASeq00010
59TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
60TP-Paradigm_Preprocess_mRNA00010
61TP-ParadigmPreprocess_mRNA00010
62TP-Paradigm_Preprocess_mRNA_And_Copy_Number00010
63TP-Paradigm_Preprocess_RNASeq00010
64TP-ParadigmPreprocess_RNASeq00010
65TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
66TP-Paradigm_Report_Preprocess_mRNA00010
67TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber00010
68TP-Paradigm_Report_Preprocess_RNASeq00010
69TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
70TP-Paradigm_RNASeq00010
71TP-Paradigm_RNASeq_And_Copy_Number00010
72TP-Pathway_FindEnrichedGenes00010
73TP-Pathway_Hotnet00010
74TP-Pathway_Paradigm_mRNA00010
75TP-Pathway_Paradigm_mRNA_And_Copy_Number00010
76TP-Pathway_Paradigm_RNASeq00010
77TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
78TP-ProcessCoverageForMutSig1.500010
79TP-ProcessCoverageForMutSig2.000010
80TP-RPPA_Clustering_CNMF00010
81TP-RPPA_Clustering_Consensus00010
Total500760

This table generated on Sat May 25 09:49:17 2013