Broad GDAC Analyses Status
analyses__2013_04_21__pancan12 Run for Tumor Type: PANCAN12
Tumor
BCR
Clinical
CN
LowP
Methylation
mRNA
mRNAseq
miR
miRseq
RPPA
MAF
PANCAN12
5591
4962
5191
423
5074
2176
3966
1061
4406
2847
3082
Note that the links below require Broad internal Firehose login credentials.
Pipeline
NotRunnable
Runnable
InProcess
Successful
Unsuccessful
1
TP-Aggregate_Gene_Status
0
1
0
0
0
2
TP-Aggregate_Molecular_Subtype_Clusters
0
1
0
0
0
3
TP-CoMut1.5
1
0
0
0
0
4
TP-CoMut2.0
1
0
0
0
0
5
TP-CoMutCV
1
0
0
0
0
6
TP-CopyNumber_Clustering_CNMF
0
0
0
0
1
7
TP-CopyNumber_Gistic2
0
0
0
1
0
8
TP-CopyNumber_Gistic2_Analysis
0
0
0
1
0
9
TP-CopyNumber_Gistic2_Postprocess_Focal
0
0
0
1
0
10
TP-Correlate_Clinical_vs_CopyNumber_Arm
0
0
0
0
1
11
TP-Correlate_Clinical_vs_CopyNumber_Focal
0
0
0
1
0
12
TP-Correlate_Clinical_vs_Methylation
0
0
0
1
0
13
TP-Correlate_Clinical_vs_miR
0
0
0
1
0
14
TP-Correlate_Clinical_vs_miRseq
1
0
0
0
0
15
TP-Correlate_Clinical_vs_Molecular_Subtypes
1
0
0
0
0
16
TP-Correlate_Clinical_vs_mRNA
0
0
0
1
0
17
TP-Correlate_Clinical_vs_mRNAseq
1
0
0
0
0
18
TP-Correlate_Clinical_vs_Mutation
1
0
0
0
0
19
TP-Correlate_Clinical_vs_RPPA
1
0
0
0
0
20
TP-Correlate_CopyNumber_vs_miR
0
0
0
0
1
21
TP-Correlate_CopyNumber_vs_mRNA
0
0
0
0
1
22
TP-Correlate_CopyNumber_vs_mRNAseq
1
0
0
0
0
23
TP-Correlate_Methylation_vs_mRNA
0
0
0
1
0
24
TP-Correlate_molecularSubtype_vs_CopyNumber_Arm
1
0
0
0
0
25
TP-Correlate_molecularSubtype_vs_CopyNumber_Focal
1
0
0
0
0
26
TP-Correlate_molecularSubtype_vs_Mutation
1
0
0
0
0
27
TP-GenerateStickFigures1.5
1
0
0
0
0
28
TP-GenerateStickFigures2.0
1
0
0
0
0
29
TP-GenerateStickFiguresCV
1
0
0
0
0
30
TP-Hotnet
1
0
0
0
0
31
TP-Hotnet_preprocess
1
0
0
0
0
32
TP-Methylation_Clustering_CNMF
0
0
0
0
1
33
TP-Methylation_Preprocess
0
0
0
1
0
34
TP-miR_Clustering_CNMF
0
0
0
1
0
35
TP-miR_Clustering_Consensus
0
0
0
1
0
36
TP-miR_FindDirectTargets
0
0
0
1
0
37
TP-miRseq_Clustering_CNMF
1
0
0
0
0
38
TP-miRseq_Clustering_Consensus
1
0
0
0
0
39
TP-miRseq_Preprocess
1
0
0
0
0
40
TP-mRNA_Clustering_CNMF
0
0
0
1
0
41
TP-mRNA_Clustering_Consensus
0
0
0
0
1
42
TP-mRNA_Preprocess_Median
0
0
0
1
0
43
TP-mRNAseq_Clustering_CNMF
1
0
0
0
0
44
TP-mRNAseq_Clustering_Consensus
1
0
0
0
0
45
TP-Mutation_Assessor
1
0
0
0
0
46
TP-MutSigNozzleReport1.5
1
0
0
0
0
47
TP-MutSigNozzleReport2.0
1
0
0
0
0
48
TP-MutSigNozzleReportCV
1
0
0
0
0
49
TP-MutSigPreprocess1.5
1
0
0
0
0
50
TP-MutSigPreprocess2.0
1
0
0
0
0
51
TP-MutSigRun1.5
1
0
0
0
0
52
TP-MutSigRun2.0
1
0
0
0
0
53
TP-MutSigRunCV
1
0
0
0
0
54
TP-Paradigm_mRNA
1
0
0
0
0
55
TP-Paradigm_mRNA_And_CopyNumber
1
0
0
0
0
56
TP-Paradigm_Prepare_mRNA
1
0
0
0
0
57
TP-Paradigm_Prepare_mRNA_And_Copy_Number
1
0
0
0
0
58
TP-Paradigm_Prepare_RNASeq
1
0
0
0
0
59
TP-Paradigm_Prepare_RNASeq_And_Copy_Number
1
0
0
0
0
60
TP-ParadigmPreprocess_mRNA
0
0
0
0
1
61
TP-Paradigm_Preprocess_mRNA
1
0
0
0
0
62
TP-Paradigm_Preprocess_mRNA_And_Copy_Number
1
0
0
0
0
63
TP-Paradigm_Preprocess_RNASeq
1
0
0
0
0
64
TP-ParadigmPreprocess_RNASeq
1
0
0
0
0
65
TP-Paradigm_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
66
TP-Paradigm_Report_Preprocess_mRNA
1
0
0
0
0
67
TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber
1
0
0
0
0
68
TP-Paradigm_Report_Preprocess_RNASeq
1
0
0
0
0
69
TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number
1
0
0
0
0
70
TP-Paradigm_RNASeq
1
0
0
0
0
71
TP-Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
72
TP-Pathway_FindEnrichedGenes
1
0
0
0
0
73
TP-Pathway_Hotnet
1
0
0
0
0
74
TP-Pathway_Paradigm_mRNA
1
0
0
0
0
75
TP-Pathway_Paradigm_mRNA_And_Copy_Number
1
0
0
0
0
76
TP-Pathway_Paradigm_RNASeq
1
0
0
0
0
77
TP-Pathway_Paradigm_RNASeq_And_Copy_Number
1
0
0
0
0
78
TP-ProcessCoverageForMutSig1.5
1
0
0
0
0
79
TP-ProcessCoverageForMutSig2.0
1
0
0
0
0
80
TP-RPPA_Clustering_CNMF
1
0
0
0
0
81
TP-RPPA_Clustering_Consensus
1
0
0
0
0
Total
58
2
0
14
7
This table generated on Sat May 25 09:49:19 2013