Broad GDAC Analyses Status
analyses__2013_04_21__skcm Run for Tumor Type: SKCM

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
SKCM33621128811931602820283164253

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PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TM-Aggregate_Gene_Status00010
2TM-Aggregate_Molecular_Subtype_Clusters00010
3TM-CoMut1.500010
4TM-CoMut2.000010
5TM-CoMutCV00010
6TM-CopyNumber_Clustering_CNMF00010
7TM-CopyNumber_Gistic200010
8TM-CopyNumber_Gistic2_Analysis00010
9TM-CopyNumber_Gistic2_Postprocess_Focal00010
10TM-Correlate_Clinical_vs_CopyNumber_Arm00010
11TM-Correlate_Clinical_vs_CopyNumber_Focal00010
12TM-Correlate_Clinical_vs_Methylation00010
13TM-Correlate_Clinical_vs_miR10000
14TM-Correlate_Clinical_vs_miRseq00010
15TM-Correlate_Clinical_vs_Molecular_Subtypes00010
16TM-Correlate_Clinical_vs_mRNA10000
17TM-Correlate_Clinical_vs_mRNAseq00010
18TM-Correlate_Clinical_vs_Mutation00010
19TM-Correlate_Clinical_vs_RPPA00010
20TM-Correlate_CopyNumber_vs_miR10000
21TM-Correlate_CopyNumber_vs_mRNA10000
22TM-Correlate_CopyNumber_vs_mRNAseq00010
23TM-Correlate_Methylation_vs_mRNA00010
24TM-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
25TM-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
26TM-Correlate_molecularSubtype_vs_Mutation00010
27TM-GenerateStickFigures1.500010
28TM-GenerateStickFigures2.000010
29TM-GenerateStickFiguresCV00010
30TM-Hotnet00010
31TM-Hotnet_preprocess00010
32TM-Methylation_Clustering_CNMF00010
33TM-Methylation_Preprocess00010
34TM-miR_Clustering_CNMF10000
35TM-miR_Clustering_Consensus10000
36TM-miR_FindDirectTargets10000
37TM-miRseq_Clustering_CNMF00010
38TM-miRseq_Clustering_Consensus00010
39TM-miRseq_Preprocess00010
40TM-mRNA_Clustering_CNMF10000
41TM-mRNA_Clustering_Consensus10000
42TM-mRNA_Preprocess_Median10000
43TM-mRNAseq_Clustering_CNMF00010
44TM-mRNAseq_Clustering_Consensus00010
45TM-Mutation_Assessor00010
46TM-MutSigNozzleReport1.500010
47TM-MutSigNozzleReport2.000010
48TM-MutSigNozzleReportCV00010
49TM-MutSigPreprocess1.500010
50TM-MutSigPreprocess2.000010
51TM-MutSigRun1.500010
52TM-MutSigRun2.000010
53TM-MutSigRunCV00010
54TM-Paradigm_mRNA10000
55TM-Paradigm_mRNA_And_CopyNumber10000
56TM-Paradigm_Prepare_mRNA10000
57TM-Paradigm_Prepare_mRNA_And_Copy_Number10000
58TM-Paradigm_Prepare_RNASeq00010
59TM-Paradigm_Prepare_RNASeq_And_Copy_Number00010
60TM-Paradigm_Preprocess_mRNA10000
61TM-ParadigmPreprocess_mRNA10000
62TM-Paradigm_Preprocess_mRNA_And_Copy_Number10000
63TM-Paradigm_Preprocess_RNASeq00010
64TM-ParadigmPreprocess_RNASeq00010
65TM-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
66TM-Paradigm_Report_Preprocess_mRNA10000
67TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
68TM-Paradigm_Report_Preprocess_RNASeq00010
69TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
70TM-Paradigm_RNASeq00010
71TM-Paradigm_RNASeq_And_Copy_Number00010
72TM-Pathway_FindEnrichedGenes10000
73TM-Pathway_Hotnet00010
74TM-Pathway_Paradigm_mRNA10000
75TM-Pathway_Paradigm_mRNA_And_Copy_Number10000
76TM-Pathway_Paradigm_RNASeq00010
77TM-Pathway_Paradigm_RNASeq_And_Copy_Number00010
78TM-ProcessCoverageForMutSig1.500010
79TM-ProcessCoverageForMutSig2.000010
80TM-RPPA_Clustering_CNMF00010
81TM-RPPA_Clustering_Consensus00010
Total2200590

This table generated on Sat May 25 09:49:20 2013