Broad GDAC analyses__2013_04_21__skcm Run Status : SKCM

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
SKCM	336	211	288	119	316	0	282	0	283	164	253

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	Pipeline	NotRunnable	Successful
1	TM-Aggregate_Gene_Status	0	1
2	TM-Aggregate_Molecular_Subtype_Clusters	0	1
3	TM-CoMut1.5	0	1
4	TM-CoMut2.0	0	1
5	TM-CoMutCV	0	1
6	TM-CopyNumber_Clustering_CNMF	0	1
7	TM-CopyNumber_Gistic2	0	1
8	TM-CopyNumber_Gistic2_Analysis	0	1
9	TM-CopyNumber_Gistic2_Postprocess_Focal	0	1
10	TM-Correlate_Clinical_vs_CopyNumber_Arm	0	1
11	TM-Correlate_Clinical_vs_CopyNumber_Focal	0	1
12	TM-Correlate_Clinical_vs_Methylation	0	1
13	TM-Correlate_Clinical_vs_miR	1	0
14	TM-Correlate_Clinical_vs_miRseq	0	1
15	TM-Correlate_Clinical_vs_Molecular_Subtypes	0	1
16	TM-Correlate_Clinical_vs_mRNA	1	0
17	TM-Correlate_Clinical_vs_mRNAseq	0	1
18	TM-Correlate_Clinical_vs_Mutation	0	1
19	TM-Correlate_Clinical_vs_RPPA	0	1
20	TM-Correlate_CopyNumber_vs_miR	1	0
21	TM-Correlate_CopyNumber_vs_mRNA	1	0
22	TM-Correlate_CopyNumber_vs_mRNAseq	0	1
23	TM-Correlate_Methylation_vs_mRNA	0	1
24	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1
25	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1
26	TM-Correlate_molecularSubtype_vs_Mutation	0	1
27	TM-GenerateStickFigures1.5	0	1
28	TM-GenerateStickFigures2.0	0	1
29	TM-GenerateStickFiguresCV	0	1
30	TM-Hotnet	0	1
31	TM-Hotnet_preprocess	0	1
32	TM-Methylation_Clustering_CNMF	0	1
33	TM-Methylation_Preprocess	0	1
34	TM-miR_Clustering_CNMF	1	0
35	TM-miR_Clustering_Consensus	1	0
36	TM-miR_FindDirectTargets	1	0
37	TM-miRseq_Clustering_CNMF	0	1
38	TM-miRseq_Clustering_Consensus	0	1
39	TM-miRseq_Preprocess	0	1
40	TM-mRNA_Clustering_CNMF	1	0
41	TM-mRNA_Clustering_Consensus	1	0
42	TM-mRNA_Preprocess_Median	1	0
43	TM-mRNAseq_Clustering_CNMF	0	1
44	TM-mRNAseq_Clustering_Consensus	0	1
45	TM-Mutation_Assessor	0	1
46	TM-MutSigNozzleReport1.5	0	1
47	TM-MutSigNozzleReport2.0	0	1
48	TM-MutSigNozzleReportCV	0	1
49	TM-MutSigPreprocess1.5	0	1
50	TM-MutSigPreprocess2.0	0	1
51	TM-MutSigRun1.5	0	1
52	TM-MutSigRun2.0	0	1
53	TM-MutSigRunCV	0	1
54	TM-Paradigm_mRNA	1	0
55	TM-Paradigm_mRNA_And_CopyNumber	1	0
56	TM-Paradigm_Prepare_mRNA	1	0
57	TM-Paradigm_Prepare_mRNA_And_Copy_Number	1	0
58	TM-Paradigm_Prepare_RNASeq	0	1
59	TM-Paradigm_Prepare_RNASeq_And_Copy_Number	0	1
60	TM-Paradigm_Preprocess_mRNA	1	0
61	TM-ParadigmPreprocess_mRNA	1	0
62	TM-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0
63	TM-Paradigm_Preprocess_RNASeq	0	1
64	TM-ParadigmPreprocess_RNASeq	0	1
65	TM-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	1
66	TM-Paradigm_Report_Preprocess_mRNA	1	0
67	TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0
68	TM-Paradigm_Report_Preprocess_RNASeq	0	1
69	TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	1
70	TM-Paradigm_RNASeq	0	1
71	TM-Paradigm_RNASeq_And_Copy_Number	0	1
72	TM-Pathway_FindEnrichedGenes	1	0
73	TM-Pathway_Hotnet	0	1
74	TM-Pathway_Paradigm_mRNA	1	0
75	TM-Pathway_Paradigm_mRNA_And_Copy_Number	1	0
76	TM-Pathway_Paradigm_RNASeq	0	1
77	TM-Pathway_Paradigm_RNASeq_And_Copy_Number	0	1
78	TM-ProcessCoverageForMutSig1.5	0	1
79	TM-ProcessCoverageForMutSig2.0	0	1
80	TM-RPPA_Clustering_CNMF	0	1
81	TM-RPPA_Clustering_Consensus	0	1
	Total	22	59

This table generated on Sat May 25 09:49:20 2013

Broad GDAC Analyses Status analyses__2013_04_21__skcm Run for Tumor Type: SKCM

Broad GDAC Analyses Status
analyses__2013_04_21__skcm Run for Tumor Type: SKCM