		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p22.3)	0 (0%)	705	1.2909e-13	6.27e-11	6.6693e-12	3e-09	6.6066e-18	3.63e-15	1.9538e-17	1.06e-14	0.00013949	0.0318	1.2827e-07	4.5e-05	9.2457e-16	4.88e-13	2.3992e-16	1.28e-13	1.3556e-13	6.57e-11	1.3621e-15	7.14e-13
Amp Peak  2(1q21.3)	0 (0%)	254	1.542e-07	5.37e-05	0.0018488	0.322	6.4517e-09	2.54e-06	1.6622e-06	0.000504	0.058626	1	0.0070266	1	0.00016729	0.0373	0.00020475	0.045	0.001015	0.184	0.0026165	0.434
Amp Peak  3(1q44)	0 (0%)	258	3.9045e-06	0.00113	0.26345	1	1.3715e-07	4.8e-05	9.2238e-06	0.0025	0.86382	1	0.32448	1	0.20618	1	0.38322	1	0.71104	1	0.027745	1
Amp Peak  4(3p26.1)	0 (0%)	725	0.012356	1	0.0080285	1	1.0082e-13	4.93e-11	2.9518e-06	0.000868	0.0057272	0.848	0.0086881	1	5.1084e-09	2.03e-06	6.5674e-07	0.000213	5.9715e-06	0.00168	1.179e-08	4.49e-06
Amp Peak  5(3q26.32)	0 (0%)	625	6.8833e-11	2.96e-08	7.835e-10	3.2e-07	8.7247e-36	5.38e-33	8.0052e-17	4.32e-14	7.1633e-07	0.000231	2.9244e-06	0.000863	4.3122e-22	2.52e-19	5.8797e-21	3.36e-18	1.6347e-15	8.53e-13	6.3915e-24	3.78e-21
Amp Peak  6(4q13.3)	0 (0%)	770	5.6271e-05	0.0137	0.00023006	0.0495	7.8651e-14	3.87e-11	3.9708e-07	0.000131	0.047129	1	0.52372	1	6.9972e-06	0.00195	2.3977e-05	0.00628	0.0013768	0.246	1.1087e-07	3.92e-05
Amp Peak  7(6p23)	0 (0%)	670	3.5923e-07	0.00012	1.9221e-07	6.59e-05	5.6524e-34	3.48e-31	2.4398e-17	1.33e-14	1.9752e-06	0.000593	8.4193e-05	0.0201	1.0106e-13	4.93e-11	3.5611e-11	1.56e-08	1.5184e-18	8.5e-16	2.5064e-15	1.29e-12
Amp Peak  8(6q21)	0 (0%)	743	8.1981e-14	4.03e-11	4.5353e-10	1.87e-07	1.6737e-39	1.04e-36	4.114e-13	1.95e-10	1.0432e-08	4e-06	4.6358e-07	0.000153	7.5918e-22	4.42e-19	2.7198e-18	1.51e-15	3.4224e-19	1.93e-16	4.3321e-23	2.55e-20
Amp Peak  9(8p11.23)	0 (0%)	567	1.6422e-06	0.000501	0.00561	0.836	1.4359e-24	8.5e-22	1.2172e-12	5.64e-10	0.039927	1	0.0047255	0.718	0.00022688	0.049	3.3369e-05	0.00851	0.0447	1	0.033209	1
Amp Peak 10(8p11.21)	0 (0%)	559	0.014371	1	0.042207	1	1.0092e-22	5.92e-20	4.028e-08	1.46e-05	0.79102	1	0.63322	1	0.00022439	0.0487	0.00010386	0.0242	0.036101	1	0.021461	1
Amp Peak 11(8q24.21)	0 (0%)	329	1.1713e-16	6.3e-14	2.6199e-07	8.88e-05	2.6252e-43	1.65e-40	1.7018e-27	1.02e-24	4.583e-08	1.66e-05	9.359e-07	0.000297	3.4667e-21	1.99e-18	5.5437e-15	2.83e-12	1.3145e-21	7.6e-19	2.3712e-19	1.34e-16
Amp Peak 12(10p15.1)	0 (0%)	655	1.7203e-21	9.93e-19	1.0553e-18	5.92e-16	9.9502e-35	6.13e-32	1.9349e-26	1.16e-23	6.9975e-11	3e-08	2.332e-12	1.07e-09	2.0548e-28	1.24e-25	1.1655e-28	7.06e-26	6.2326e-28	3.76e-25	1.2008e-30	7.31e-28
Amp Peak 13(10q22.3)	0 (0%)	781	2.1956e-05	0.00582	0.068118	1	8.1809e-09	3.16e-06	0.00014898	0.0337	0.0025043	0.423	0.021128	1	1.8301e-07	6.31e-05	0.00068881	0.129	3.749e-05	0.00949	0.00067482	0.127
Amp Peak 14(11p13)	0 (0%)	721	0.3112	1	0.14832	1	1.8363e-10	7.73e-08	4.8373e-05	0.012	0.10499	1	0.22904	1	2.6058e-05	0.00675	0.020359	1	1.335e-06	0.000417	1.912e-08	7.15e-06
Amp Peak 15(11q13.3)	0 (0%)	564	0.0031946	0.511	0.033582	1	4.9077e-41	3.08e-38	4.0012e-10	1.66e-07	0.96626	1	0.146	1	0.045286	1	0.16774	1	0.00029163	0.0604	0.039571	1
Amp Peak 16(11q14.1)	0 (0%)	679	0.12011	1	0.10093	1	1.801e-19	1.02e-16	7.9266e-06	0.0022	0.14811	1	0.19923	1	8.5651e-05	0.0203	0.0014633	0.259	8.9761e-07	0.000285	1.3899e-05	0.00372
Amp Peak 17(12p13.33)	0 (0%)	675	1.9128e-12	8.84e-10	2.5309e-11	1.11e-08	1.6758e-28	1.01e-25	7.2884e-17	3.94e-14	2.6973e-08	9.98e-06	2.3692e-07	8.07e-05	1.6687e-17	9.11e-15	1.4479e-15	7.57e-13	9.1778e-22	5.32e-19	5.4996e-18	3.04e-15
Amp Peak 18(12q15)	0 (0%)	678	1.8053e-08	6.79e-06	0.00013106	0.0301	1.859e-25	1.11e-22	1.4919e-13	7.21e-11	0.18817	1	0.065182	1	6.0186e-06	0.00169	1.7075e-05	0.00456	9.1555e-08	3.25e-05	0.00064375	0.124
Amp Peak 19(13q12.3)	0 (0%)	785	0.070845	1	0.055699	1	2.2211e-05	0.00586	0.0089465	1	0.015517	1	0.14227	1	2.6307e-05	0.00679	0.0026917	0.441	0.00019615	0.0433	0.00042977	0.086
Amp Peak 20(13q34)	0 (0%)	754	9.1367e-10	3.72e-07	5.7789e-09	2.28e-06	1.5072e-17	8.24e-15	1.3297e-14	6.7e-12	8.2143e-06	0.00226	5.0995e-08	1.84e-05	8.4412e-14	4.14e-11	1.168e-14	5.9e-12	1.4101e-13	6.83e-11	5.5869e-20	3.17e-17
Amp Peak 21(14q21.1)	0 (0%)	732	0.00025922	0.0547	0.004778	0.721	1.9688e-09	7.89e-07	5.1636e-05	0.0127	0.082292	1	0.03852	1	3.9159e-05	0.00987	2.4488e-06	0.000725	1.9393e-06	0.000584	0.069259	1
Amp Peak 22(15q26.3)	0 (0%)	747	3.3123e-07	0.000111	0.0067928	0.978	1.8764e-15	9.76e-13	0.00032648	0.0669	0.00015335	0.0345	0.038405	1	2.0742e-08	7.72e-06	7.9771e-06	0.0022	5.9169e-08	2.11e-05	7.5562e-09	2.93e-06
Amp Peak 23(17q12)	0 (0%)	618	1.4882e-14	7.49e-12	0.0002998	0.0618	7.2942e-34	4.48e-31	5.7605e-09	2.28e-06	0.049046	1	0.0082103	1	0.00010117	0.0237	0.00045379	0.0903	0.014778	1	0.019607	1
Amp Peak 24(17q23.1)	0 (0%)	539	2.4249e-14	1.21e-11	0.0014925	0.263	6.1853e-38	3.84e-35	1.4475e-10	6.12e-08	0.19142	1	0.33414	1	0.0006437	0.124	0.0057452	0.848	3.1035e-07	0.000104	3.5668e-06	0.00103
Amp Peak 25(19q12)	0 (0%)	680	2.1218e-12	9.74e-10	9.106e-11	3.9e-08	1.2837e-21	7.43e-19	4.2012e-12	1.91e-09	6.1858e-07	0.000202	9.6773e-07	0.000306	1.1112e-15	5.84e-13	2.081e-15	1.08e-12	6.4861e-13	3.04e-10	2.8187e-18	1.57e-15
Amp Peak 26(19q13.42)	0 (0%)	678	0.00077451	0.143	0.021165	1	2.501e-14	1.25e-11	6.2303e-07	0.000202	0.0023269	0.4	0.054933	1	0.0026433	0.436	0.028964	1	4.2746e-06	0.00123	0.004411	0.675
Amp Peak 27(20q13.2)	0 (0%)	448	1.3488e-09	5.42e-07	0.00027817	0.0581	9.7821e-50	6.22e-47	5.1753e-25	3.07e-22	0.00060413	0.117	0.015396	1	6.6787e-09	2.62e-06	2.1367e-07	7.31e-05	7.4063e-10	3.03e-07	1.1633e-06	0.000364
Del Peak  1(1p36.13)	0 (0%)	533	3.2706e-05	0.00837	0.00065137	0.124	6.0173e-32	3.68e-29	2.8107e-09	1.12e-06	0.0072615	1	0.080488	1	1.1107e-05	0.00299	6.0197e-05	0.0146	2.3659e-07	8.07e-05	0.0005596	0.11
Del Peak  2(1p22.1)	0 (0%)	608	0.002341	0.4	8.3892e-05	0.0201	5.7684e-22	3.36e-19	0.0010349	0.186	0.023059	1	0.048955	1	0.00057402	0.113	3.0555e-06	0.000892	0.012512	1	0.032926	1
Del Peak  3(2q37.3)	0 (0%)	648	1.3934e-06	0.000432	3.7757e-08	1.38e-05	1.5745e-20	8.99e-18	2.6063e-10	1.09e-07	1.0318e-08	3.96e-06	1.1079e-07	3.92e-05	1.8138e-11	8.04e-09	2.0274e-08	7.56e-06	4.6621e-11	2.02e-08	2.6339e-07	8.9e-05
Del Peak  4(3p14.3)	0 (0%)	635	1.0584e-10	4.51e-08	3.1107e-08	1.14e-05	2.9303e-33	1.8e-30	5.7835e-13	2.72e-10	1.1804e-09	4.77e-07	5.2076e-06	0.00148	4.6082e-18	2.56e-15	4.4231e-13	2.09e-10	2.2945e-19	1.3e-16	2.5745e-14	1.28e-11
Del Peak  5(4p16.3)	0 (0%)	632	5.6305e-11	2.44e-08	6.3043e-12	2.84e-09	1.9767e-26	1.18e-23	8.4122e-13	3.94e-10	4.6e-07	0.000152	1.6249e-06	0.000497	9.7486e-24	5.75e-21	2.1408e-18	1.19e-15	9.9689e-15	5.05e-12	4.699e-18	2.6e-15
Del Peak  6(4q35.2)	0 (0%)	630	3.1689e-06	0.000922	9.8064e-07	0.000309	2.706e-37	1.68e-34	1.6588e-13	8e-11	1.5119e-08	5.71e-06	1.7796e-06	0.000537	2.222e-21	1.28e-18	3.7865e-14	1.87e-11	2.8367e-13	1.36e-10	6.7335e-18	3.7e-15
Del Peak  7(5q11.2)	0 (0%)	679	1.1732e-27	7.04e-25	6.1137e-25	3.63e-22	5.9137e-60	3.78e-57	1.4321e-39	8.94e-37	3.3271e-16	1.77e-13	7.4321e-19	4.18e-16	1.3315e-40	8.35e-38	1.6995e-43	1.07e-40	8.3636e-40	5.24e-37	5.4087e-49	3.43e-46
Del Peak  8(5q21.3)	0 (0%)	688	1.3639e-29	8.28e-27	1.0003e-26	5.98e-24	6.1266e-70	3.92e-67	3.2548e-51	2.07e-48	2.5973e-15	1.34e-12	8.9738e-16	4.75e-13	5.8796e-48	3.73e-45	1.0637e-47	6.73e-45	1.2827e-39	8.02e-37	1.6726e-54	1.07e-51
Del Peak  9(6p25.3)	0 (0%)	743	0.3175	1	0.52211	1	8.5052e-07	0.000271	4.7147e-05	0.0117	0.43913	1	0.59688	1	0.0029248	0.477	0.0078573	1	0.29914	1	0.041663	1
Del Peak 10(6q15)	0 (0%)	612	1.5475e-06	0.000478	0.0013728	0.246	6.8301e-28	4.11e-25	3.7835e-08	1.38e-05	0.45649	1	0.087503	1	2.6907e-05	0.00692	0.00026186	0.055	0.013556	1	5.0416e-05	0.0124
Del Peak 11(6q27)	0 (0%)	599	0.018324	1	0.6098	1	2.8674e-14	1.42e-11	0.0037538	0.589	0.11289	1	0.7957	1	0.34137	1	0.56078	1	0.39265	1	0.11542	1
Del Peak 12(7p22.3)	0 (0%)	795	0.0029773	0.482	0.00036571	0.0742	2.0563e-15	1.07e-12	5.8917e-07	0.000193	0.021413	1	0.0055267	0.829	8.0737e-09	3.12e-06	5.3885e-08	1.93e-05	3.9557e-11	1.72e-08	1.3813e-10	5.86e-08
Del Peak 13(7q36.1)	0 (0%)	739	0.012946	1	0.042957	1	5.252e-10	2.16e-07	0.089713	1	0.55078	1	0.056216	1	0.00041367	0.0831	0.00049646	0.0983	5.264e-08	1.89e-05	1.6004e-06	0.000491
Del Peak 14(8p23.2)	0 (0%)	432	1.0843e-09	4.4e-07	2.5341e-05	0.00661	7.6285e-31	4.65e-28	1.1904e-13	5.8e-11	0.0095473	1	0.034055	1	2.0483e-11	9.03e-09	3.7053e-08	1.36e-05	5.6847e-06	0.00161	4.7884e-12	2.17e-09
Del Peak 15(8p11.21)	0 (0%)	740	0.00012588	0.0292	0.014068	1	6.186e-11	2.67e-08	0.047398	1	0.046466	1	0.019137	1	0.00059302	0.115	0.00091398	0.167	0.0040051	0.625	6.262e-06	0.00175
Del Peak 16(9p21.3)	0 (0%)	606	2.4284e-06	0.000721	0.00076043	0.141	1.1111e-29	6.76e-27	2.2104e-15	1.14e-12	0.0034135	0.543	0.44419	1	7.3085e-07	0.000235	2.6358e-07	8.9e-05	4.0189e-06	0.00116	4.1474e-12	1.89e-09
Del Peak 17(9q21.11)	0 (0%)	667	0.0025493	0.426	0.00028988	0.0603	3.4148e-16	1.81e-13	1.1898e-10	5.06e-08	1.0414e-05	0.00281	0.0065344	0.954	2.4102e-06	0.000718	8.3002e-06	0.00227	1.4099e-08	5.34e-06	9.3349e-13	4.36e-10
Del Peak 18(10q23.31)	0 (0%)	652	4.0908e-05	0.0103	9.5653e-05	0.0225	3.8281e-20	2.18e-17	4.7504e-12	2.16e-09	1.8996e-07	6.53e-05	7.3748e-05	0.0178	1.0624e-11	4.75e-09	6.9092e-09	2.69e-06	5.4734e-09	2.17e-06	3.9676e-09	1.58e-06
Del Peak 19(10q26.3)	0 (0%)	649	2.8798e-08	1.06e-05	1.4887e-07	5.2e-05	2.232e-22	1.31e-19	2.0718e-12	9.53e-10	3.0624e-08	1.13e-05	8.2479e-07	0.000264	1.7705e-15	9.22e-13	1.171e-12	5.44e-10	7.8055e-12	3.5e-09	3.4847e-15	1.79e-12
Del Peak 20(11p15.5)	0 (0%)	651	1.3439e-06	0.000418	1.6232e-07	5.62e-05	5.0122e-36	3.1e-33	1.9555e-12	9.01e-10	1.2732e-09	5.13e-07	1.6524e-06	0.000502	8.065e-18	4.42e-15	5.0697e-13	2.39e-10	3.8713e-15	1.98e-12	1.4174e-16	7.61e-14
Del Peak 21(11q13.1)	0 (0%)	719	0.0018482	0.322	0.058395	1	3.5102e-17	1.91e-14	4.3872e-06	0.00125	0.33089	1	0.39322	1	0.0082347	1	0.016887	1	0.59562	1	0.029681	1
Del Peak 22(11q23.2)	0 (0%)	464	2.0784e-08	7.72e-06	0.029644	1	3.218e-42	2.02e-39	7.6821e-12	3.45e-09	0.97534	1	0.47519	1	0.0030477	0.491	0.0025375	0.426	0.019604	1	0.00013729	0.0314
Del Peak 23(11q25)	0 (0%)	492	0.00024306	0.052	0.9595	1	6.1522e-38	3.83e-35	9.8899e-09	3.81e-06	0.12647	1	0.70695	1	0.35468	1	0.35086	1	0.092968	1	0.03309	1
Del Peak 24(12p13.1)	0 (0%)	756	0.043897	1	0.13961	1	0.00097911	0.178	0.014949	1	0.2216	1	0.042019	1	0.00020971	0.0458	0.013741	1	8.0331e-05	0.0194	8.677e-06	0.00237
Del Peak 25(12q24.21)	0 (0%)	739	9.5969e-11	4.1e-08	2.4963e-10	1.04e-07	2.3346e-15	1.2e-12	2.6833e-14	1.33e-11	0.00020918	0.0458	1.051e-06	0.00033	6.5499e-16	3.47e-13	3.4653e-13	1.65e-10	1.1669e-08	4.46e-06	3.2709e-13	1.56e-10
Del Peak 26(13q14.2)	0 (0%)	500	2.1522e-05	0.00572	4.2296e-05	0.0106	7.0739e-28	4.25e-25	1.8096e-08	6.79e-06	0.53804	1	0.11079	1	1.5495e-07	5.38e-05	6.3919e-06	0.00178	3.8647e-10	1.6e-07	1.1153e-07	3.93e-05
Del Peak 27(14q24.3)	0 (0%)	619	3.9962e-13	1.9e-10	1.5614e-08	5.89e-06	8.5986e-37	5.32e-34	3.4991e-14	1.73e-11	5.2946e-07	0.000174	5.5315e-06	0.00157	3.86e-15	1.98e-12	3.0431e-13	1.45e-10	5.4362e-18	3.01e-15	1.5189e-16	8.14e-14
Del Peak 28(15q13.1)	0 (0%)	598	3.4589e-07	0.000116	7.5675e-08	2.69e-05	6.7418e-31	4.12e-28	1.1986e-11	5.33e-09	0.00019256	0.0427	2.3206e-05	0.0061	6.0702e-15	3.09e-12	2.3219e-14	1.16e-11	6.3188e-19	3.56e-16	1.9625e-18	1.1e-15
Del Peak 29(16q24.3)	0 (0%)	326	1.6023e-16	8.57e-14	2.5109e-14	1.25e-11	1.6596e-14	8.33e-12	4.4729e-13	2.11e-10	1.1446e-09	4.64e-07	3.4541e-11	1.51e-08	2.8205e-16	1.5e-13	4.6216e-21	2.65e-18	9.2218e-15	4.68e-12	8.4866e-22	4.93e-19
Del Peak 30(17p12)	0 (0%)	367	2.14e-10	8.99e-08	0.16599	1	9.3314e-23	5.49e-20	7.404e-07	0.000238	8.0661e-05	0.0194	0.0077463	1	0.00058603	0.114	0.12057	1	0.0002551	0.0541	0.0001269	0.0293
Del Peak 31(17q21.31)	0 (0%)	598	1.0676e-14	5.4e-12	3.9073e-07	0.00013	5.421e-22	3.17e-19	1.1931e-11	5.32e-09	1.8581e-11	8.21e-09	3.1238e-11	1.37e-08	2.8586e-21	1.64e-18	8.315e-17	4.48e-14	1.1423e-12	5.32e-10	1.7604e-11	7.82e-09
Del Peak 32(18q23)	0 (0%)	620	0.00034744	0.0709	0.14873	1	1.3244e-15	6.95e-13	1.2001e-08	4.56e-06	0.0041271	0.64	0.58095	1	2.5421e-05	0.00661	0.0037051	0.585	0.00037498	0.0757	0.0001428	0.0324
Del Peak 33(19p13.3)	0 (0%)	608	5.9856e-11	2.59e-08	4.5737e-08	1.66e-05	1.2523e-44	7.91e-42	6.5313e-18	3.6e-15	3.0314e-06	0.000888	3.3891e-05	0.00861	1.1922e-12	5.53e-10	5.3985e-10	2.22e-07	9.6735e-16	5.1e-13	6.5412e-17	3.55e-14
Del Peak 34(19q13.32)	0 (0%)	730	1.5707e-06	0.000484	8.8007e-05	0.0208	4.4821e-20	2.55e-17	1.5222e-10	6.42e-08	0.00078305	0.144	4.9541e-05	0.0122	5.2784e-09	2.1e-06	6.7532e-09	2.64e-06	3.6046e-10	1.5e-07	5.7758e-12	2.61e-09
Del Peak 35(20p13)	0 (0%)	779	8.8144e-06	0.0024	0.0001582	0.0354	2.5928e-13	1.24e-10	7.1509e-09	2.78e-06	0.0015362	0.269	0.011875	1	2.4409e-10	1.02e-07	7.0566e-10	2.89e-07	2.6926e-12	1.23e-09	1.9074e-13	9.17e-11
Del Peak 36(21q11.2)	0 (0%)	731	0.00025239	0.0538	0.034183	1	4.3098e-11	1.87e-08	2.0147e-06	0.000602	0.22548	1	0.50164	1	0.058127	1	0.19667	1	0.014182	1	0.019373	1
Del Peak 37(22q13.32)	0 (0%)	503	0.16446	1	0.043759	1	0.062967	1	0.00067355	0.127	0.12127	1	0.0218	1	0.0066117	0.959	0.0024667	0.419	0.0043777	0.674	0.49157	1
