
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/397414/COAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/COAD-TP/3143958/1.GDAC_mergedClustering.Finished/COAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=COAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=COAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=425, in cluster file=155, common to both=155
[1] "Reduce the number of clustering variables from 121 to 120."
[1] 120 155
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
          103            52 
  APC MUTATED APC WILD-TYPE 
          103            52 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            20            135 
  BRAF MUTATED BRAF WILD-TYPE 
            20            135 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             29             126 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             29             126 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            58             97 
  KRAS MUTATED KRAS WILD-TYPE 
            58             97 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            15            140 
  NRAS MUTATED NRAS WILD-TYPE 
            15            140 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              26              129 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              26              129 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            75             80 
  TP53 MUTATED TP53 WILD-TYPE 
            75             80 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             18             137 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             18             137 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               19               136 
  FAM123B MUTATED FAM123B WILD-TYPE 
               19               136 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
           69            86 
  TTN MUTATED TTN WILD-TYPE 
           69            86 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               17               138 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               17               138 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              13              142 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              13              142 
[1] "TNFRSF10C MUTATION ANALYSIS"
[1] 3
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 149 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 149 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             10             145 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             10             145 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               9              146 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               9              146 
[1] "PCBP1 MUTATION ANALYSIS"
[1] 3
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              4             151 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              4             151 
[1] "FAT4 MUTATION ANALYSIS"
[1] 3
  FAT4 MUTATED FAT4 WILD-TYPE 
            29            126 
  FAT4 MUTATED FAT4 WILD-TYPE 
            29            126 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             30             125 
  LRP1B MUTATED LRP1B WILD-TYPE 
             30             125 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             17             138 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             17             138 
[1] "GRIA1 MUTATION ANALYSIS"
[1] 3
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             14             141 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             14             141 
[1] "SDK1 MUTATION ANALYSIS"
[1] 3
  SDK1 MUTATED SDK1 WILD-TYPE 
            25            130 
  SDK1 MUTATED SDK1 WILD-TYPE 
            25            130 
[1] "SOX9 MUTATION ANALYSIS"
[1] 3
  SOX9 MUTATED SOX9 WILD-TYPE 
             9            146 
  SOX9 MUTATED SOX9 WILD-TYPE 
             9            146 
[1] "DMD MUTATION ANALYSIS"
[1] 3
  DMD MUTATED DMD WILD-TYPE 
           27           128 
  DMD MUTATED DMD WILD-TYPE 
           27           128 
[1] "CNTN6 MUTATION ANALYSIS"
[1] 3
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             15             140 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             15             140 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               8              147 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               8              147 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             147 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             147 
[1] "OR6N1 MUTATION ANALYSIS"
[1] 3
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              8             147 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              8             147 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             16             139 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             16             139 
[1] "TXNDC3 MUTATION ANALYSIS"
[1] 3
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              10              145 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              10              145 
[1] "MGC26647 MUTATION ANALYSIS"
[1] 3
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                148 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                148 
[1] "FAM22F MUTATION ANALYSIS"
[1] 3
  FAM22F MUTATED FAM22F WILD-TYPE 
               8              147 
  FAM22F MUTATED FAM22F WILD-TYPE 
               8              147 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               8              147 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               8              147 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              11              144 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              11              144 
[1] "AFF2 MUTATION ANALYSIS"
[1] 3
  AFF2 MUTATED AFF2 WILD-TYPE 
            15            140 
  AFF2 MUTATED AFF2 WILD-TYPE 
            15            140 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              6             149 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              6             149 
[1] "OTOL1 MUTATION ANALYSIS"
[1] 3
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              7             148 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              7             148 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             10             145 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             10             145 
[1] "ISL1 MUTATION ANALYSIS"
[1] 3
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            147 
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            147 
[1] "MGC42105 MUTATION ANALYSIS"
[1] 3
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                10                145 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                10                145 
[1] "ACOT4 MUTATION ANALYSIS"
[1] 3
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             152 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             152 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             13             142 
  CDH11 MUTATED CDH11 WILD-TYPE 
             13             142 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           21           134 
  ATM MUTATED ATM WILD-TYPE 
           21           134 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            11            144 
  TPTE MUTATED TPTE WILD-TYPE 
            11            144 
[1] "BTNL8 MUTATION ANALYSIS"
[1] 3
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             152 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             152 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             12             143 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             12             143 
[1] "ROBO1 MUTATION ANALYSIS"
[1] 3
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             14             141 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             14             141 
[1] "GGT1 MUTATION ANALYSIS"
[1] 3
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            152 
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            152 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           26           129 
  FLG MUTATED FLG WILD-TYPE 
           26           129 
[1] "PCDHB2 MUTATION ANALYSIS"
[1] 3
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              13              142 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              13              142 
[1] "POSTN MUTATION ANALYSIS"
[1] 3
  POSTN MUTATED POSTN WILD-TYPE 
             11             144 
  POSTN MUTATED POSTN WILD-TYPE 
             11             144 
[1] "OR51V1 MUTATION ANALYSIS"
[1] 3
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              146 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              146 
[1] "GRIK3 MUTATION ANALYSIS"
[1] 3
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             14             141 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             14             141 
[1] "LRRN3 MUTATION ANALYSIS"
[1] 3
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              9             146 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              9             146 
[1] "PRDM9 MUTATION ANALYSIS"
[1] 3
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             11             144 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             11             144 
[1] "ADAM29 MUTATION ANALYSIS"
[1] 3
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               9              146 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               9              146 
[1] "KIAA1486 MUTATION ANALYSIS"
[1] 3
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 9                146 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 9                146 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            147 
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            147 
[1] "NCKAP5 MUTATION ANALYSIS"
[1] 3
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              13              142 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              13              142 
[1] "C8B MUTATION ANALYSIS"
[1] 3
  C8B MUTATED C8B WILD-TYPE 
            9           146 
  C8B MUTATED C8B WILD-TYPE 
            9           146 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             28             127 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             28             127 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             145 
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             145 
[1] "CCDC160 MUTATION ANALYSIS"
[1] 3
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                5               150 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                5               150 
[1] "DCAF4L2 MUTATION ANALYSIS"
[1] 3
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                9               146 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                9               146 
[1] "DKK2 MUTATION ANALYSIS"
[1] 3
  DKK2 MUTATED DKK2 WILD-TYPE 
             5            150 
  DKK2 MUTATED DKK2 WILD-TYPE 
             5            150 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             13             142 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             13             142 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             14             141 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             14             141 
[1] "GUCY1A3 MUTATION ANALYSIS"
[1] 3
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               10               145 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               10               145 
[1] "IFT80 MUTATION ANALYSIS"
[1] 3
  IFT80 MUTATED IFT80 WILD-TYPE 
              7             148 
  IFT80 MUTATED IFT80 WILD-TYPE 
              7             148 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              7             148 
  INHBA MUTATED INHBA WILD-TYPE 
              7             148 
[1] "KLK2 MUTATION ANALYSIS"
[1] 3
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            152 
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            152 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             11             144 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             11             144 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             149 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             149 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             12             143 
  SCN7A MUTATED SCN7A WILD-TYPE 
             12             143 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               7              148 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               7              148 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             13             142 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             13             142 
[1] "OR8J1 MUTATION ANALYSIS"
[1] 3
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              4             151 
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              4             151 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             12             143 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             12             143 
[1] "SFMBT2 MUTATION ANALYSIS"
[1] 3
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              12              143 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              12              143 
[1] "IL18R1 MUTATION ANALYSIS"
[1] 3
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               8              147 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               8              147 
[1] "PCDH17 MUTATION ANALYSIS"
[1] 3
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              14              141 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              14              141 
[1] "FLRT2 MUTATION ANALYSIS"
[1] 3
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             11             144 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             11             144 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              17              138 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              17              138 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             4            151 
  PTEN MUTATED PTEN WILD-TYPE 
             4            151 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             17             138 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             17             138 
[1] "NRXN3 MUTATION ANALYSIS"
[1] 3
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             15             140 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             15             140 
[1] "LIFR MUTATION ANALYSIS"
[1] 3
  LIFR MUTATED LIFR WILD-TYPE 
            13            142 
  LIFR MUTATED LIFR WILD-TYPE 
            13            142 
[1] "ZNF429 MUTATION ANALYSIS"
[1] 3
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               7              148 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               7              148 
[1] "OR2M2 MUTATION ANALYSIS"
[1] 3
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             149 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             149 
[1] "TMEM132D MUTATION ANALYSIS"
[1] 3
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                15                140 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                15                140 
[1] "SAT1 MUTATION ANALYSIS"
[1] 3
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            151 
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            151 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             10             145 
  CDH18 MUTATED CDH18 WILD-TYPE 
             10             145 
[1] "P2RY10 MUTATION ANALYSIS"
[1] 3
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               6              149 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               6              149 
[1] "SYT16 MUTATION ANALYSIS"
[1] 3
  SYT16 MUTATED SYT16 WILD-TYPE 
              6             149 
  SYT16 MUTATED SYT16 WILD-TYPE 
              6             149 
[1] "DKK4 MUTATION ANALYSIS"
[1] 3
  DKK4 MUTATED DKK4 WILD-TYPE 
             4            151 
  DKK4 MUTATED DKK4 WILD-TYPE 
             4            151 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             14             141 
  NALCN MUTATED NALCN WILD-TYPE 
             14             141 
[1] "SULT1C4 MUTATION ANALYSIS"
[1] 3
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3               152 
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3               152 
[1] "UMOD MUTATION ANALYSIS"
[1] 3
  UMOD MUTATED UMOD WILD-TYPE 
             7            148 
  UMOD MUTATED UMOD WILD-TYPE 
             7            148 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              149 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              149 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              12              143 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              12              143 
[1] "USP17L2 MUTATION ANALYSIS"
[1] 3
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                7               148 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                7               148 
[1] "ESR1 MUTATION ANALYSIS"
[1] 3
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            144 
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            144 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             10             145 
  FAM5C MUTATED FAM5C WILD-TYPE 
             10             145 
[1] "MIER3 MUTATION ANALYSIS"
[1] 3
  MIER3 MUTATED MIER3 WILD-TYPE 
             10             145 
  MIER3 MUTATED MIER3 WILD-TYPE 
             10             145 
[1] "NLRP5 MUTATION ANALYSIS"
[1] 3
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             10             145 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             10             145 
[1] "OR6T1 MUTATION ANALYSIS"
[1] 3
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             149 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             149 
[1] "PCDH10 MUTATION ANALYSIS"
[1] 3
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              14              141 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              14              141 
[1] "PCDHB5 MUTATION ANALYSIS"
[1] 3
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              12              143 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              12              143 
[1] "TRPC6 MUTATION ANALYSIS"
[1] 3
  TRPC6 MUTATED TRPC6 WILD-TYPE 
              8             147 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
              8             147 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             4            151 
  RHOA MUTATED RHOA WILD-TYPE 
             4            151 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             37             118 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             37             118 
[1] "CYTL1 MUTATION ANALYSIS"
[1] 3
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             151 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             151 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              8             147 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              8             147 
[1] "GALNT14 MUTATION ANALYSIS"
[1] 3
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                9               146 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                9               146 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               7              148 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               7              148 
[1] "NAALAD2 MUTATION ANALYSIS"
[1] 3
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               144 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               144 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               11               144 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               11               144 
[1] "TFAP2D MUTATION ANALYSIS"
[1] 3
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               5              150 
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               5              150 
[1] "TNR MUTATION ANALYSIS"
[1] 3
  TNR MUTATED TNR WILD-TYPE 
           15           140 
  TNR MUTATED TNR WILD-TYPE 
           15           140 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               10               145 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               10               145 
[1] "DOCK2 MUTATION ANALYSIS"
[1] 3
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             16             139 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             16             139 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 155 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "MRNA_CNMF"            "MRNA_CHIERARCHICAL"   "CN_CNMF"             
[4] "RPPA_CNMF"            "RPPA_CHIERARCHICAL"   "MIRSEQ_CNMF"         
[7] "MIRSEQ_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 155 columns, 0 survival variables, and 7 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = APC MUTATION ANALYSIS
D1V1, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          14            16
  CLUS_2          42            16
  CLUS_3          23             6
  CLUS_4          16             8
D1V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          40            13
  CLUS_2          22            21
  CLUS_3          33            12
D1V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          52            18
  CLUS_2          35            29
  CLUS_3           8             3
  CLUS_4           6             2
D1V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          18             6
  CLUS_2          29            19
  CLUS_3          12             6
  CLUS_4           9             5
D1V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           4             3
  CLUS_2           5             3
  CLUS_3           9             1
  CLUS_4          50            29
D1V6, binary
               cls
clus             0  1
  APC MUTATED   91  3
  APC WILD-TYPE 46  2
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     91    3
  APC WILD-TYPE   46    2
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          91            46
  CLUS_3           3             2
D1V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          91            46
  CLUS_2           2             1
  CLUS_3           1             1

Clustering(2) Variable = BRAF MUTATION ANALYSIS
D2V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           12             18
  CLUS_2            1             57
  CLUS_3            4             25
  CLUS_4            1             23
D2V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             52
  CLUS_2           16             27
  CLUS_3            1             44
D2V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             68
  CLUS_2           18             46
  CLUS_3            0             11
  CLUS_4            0              8
D2V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3             21
  CLUS_2            4             44
  CLUS_3            3             15
  CLUS_4            1             13
D2V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            8             71
D2V6, binary
                cls
clus               0   1
  BRAF MUTATED    18   2
  BRAF WILD-TYPE 119   3
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     18    2
  BRAF WILD-TYPE  119    3
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           18            119
  CLUS_3            2              3
D2V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           20            117
  CLUS_2            0              3
  CLUS_3            0              2

Clustering(3) Variable = FBXW7 MUTATION ANALYSIS
D3V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             9              21
  CLUS_2             7              51
  CLUS_3             6              23
  CLUS_4             3              21
D3V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             8              45
  CLUS_2            12              31
  CLUS_3             5              40
D3V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             6              64
  CLUS_2            20              44
  CLUS_3             0              11
  CLUS_4             3               5
D3V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5              19
  CLUS_2             8              40
  CLUS_3             1              17
  CLUS_4             8               6
D3V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             4               4
  CLUS_3             2               8
  CLUS_4            15              64
D3V6, binary
                 cls
clus                0   1
  FBXW7 MUTATED    27   0
  FBXW7 WILD-TYPE 110   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     27    0
  FBXW7 WILD-TYPE  110    5
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            27             110
  CLUS_3             0               5
D3V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            26             111
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(4) Variable = KRAS MUTATION ANALYSIS
D4V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            8             22
  CLUS_2           16             42
  CLUS_3           19             10
  CLUS_4            7             17
D4V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           27             26
  CLUS_2           16             27
  CLUS_3            7             38
D4V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           21             49
  CLUS_2           25             39
  CLUS_3            6              5
  CLUS_4            5              3
D4V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           10             14
  CLUS_2           23             25
  CLUS_3            6             12
  CLUS_4            6              8
D4V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            3              4
  CLUS_2            2              6
  CLUS_3            5              5
  CLUS_4           35             44
D4V6, binary
                cls
clus              0  1
  KRAS MUTATED   50  2
  KRAS WILD-TYPE 87  3
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     50    2
  KRAS WILD-TYPE   87    3
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           50             87
  CLUS_3            2              3
D4V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           51             86
  CLUS_2            0              3
  CLUS_3            1              1

Clustering(5) Variable = NRAS MUTATION ANALYSIS
D5V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             30
  CLUS_2            8             50
  CLUS_3            4             25
  CLUS_4            2             22
D5V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            7             46
  CLUS_2            2             41
  CLUS_3            5             40
D5V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            9             61
  CLUS_2            5             59
  CLUS_3            0             11
  CLUS_4            1              7
D5V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             24
  CLUS_2            9             39
  CLUS_3            1             17
  CLUS_4            2             12
D5V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0              7
  CLUS_2            2              6
  CLUS_3            0             10
  CLUS_4           10             69
D5V6, binary
                cls
clus               0   1
  NRAS MUTATED    13   0
  NRAS WILD-TYPE 124   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     13    0
  NRAS WILD-TYPE  124    5
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           13            124
  CLUS_3            0              5
D5V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           13            124
  CLUS_2            0              3
  CLUS_3            0              2

Clustering(6) Variable = PIK3CA MUTATION ANALYSIS
D6V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5               25
  CLUS_2              5               53
  CLUS_3              7               22
  CLUS_4              4               20
D6V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               44
  CLUS_2              8               35
  CLUS_3              4               41
D6V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5               65
  CLUS_2             17               47
  CLUS_3              2                9
  CLUS_4              1                7
D6V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              7               17
  CLUS_2              9               39
  CLUS_3              1               17
  CLUS_4              4               10
D6V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2                6
  CLUS_3              4                6
  CLUS_4             14               65
D6V6, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    22   1
  PIK3CA WILD-TYPE 115   4
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     22    1
  PIK3CA WILD-TYPE  115    4
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             22              115
  CLUS_3              1                4
D6V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             22              115
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(7) Variable = TP53 MUTATION ANALYSIS
D7V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           11             19
  CLUS_2           39             19
  CLUS_3            9             20
  CLUS_4           11             13
D7V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           30             23
  CLUS_2           13             30
  CLUS_3           27             18
D7V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           51             19
  CLUS_2           13             51
  CLUS_3            4              7
  CLUS_4            6              2
D7V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            8             16
  CLUS_2           24             24
  CLUS_3            8             10
  CLUS_4            4             10
D7V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            3              4
  CLUS_2            1              7
  CLUS_3            4              6
  CLUS_4           36             43
D7V6, binary
                cls
clus              0  1
  TP53 MUTATED   69  1
  TP53 WILD-TYPE 68  4
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     69    1
  TP53 WILD-TYPE   68    4
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           69             68
  CLUS_3            1              4
D7V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           67             70
  CLUS_2            2              1
  CLUS_3            1              1

Clustering(8) Variable = SMAD4 MUTATION ANALYSIS
D8V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             4              54
  CLUS_3             6              23
  CLUS_4             2              22
D8V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              48
  CLUS_2             7              36
  CLUS_3             5              40
D8V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              67
  CLUS_2            11              53
  CLUS_3             1              10
  CLUS_4             3               5
D8V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             3              21
  CLUS_2             9              39
  CLUS_3             2              16
  CLUS_4             0              14
D8V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4            11              68
D8V6, binary
                 cls
clus                0   1
  SMAD4 MUTATED    17   0
  SMAD4 WILD-TYPE 120   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     17    0
  SMAD4 WILD-TYPE  120    5
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            17             120
  CLUS_3             0               5
D8V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            17             120
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(9) Variable = FAM123B MUTATION ANALYSIS
D9V1, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               7                23
  CLUS_2               6                52
  CLUS_3               5                24
  CLUS_4               1                23
D9V2, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               7                46
  CLUS_2              10                33
  CLUS_3               2                43
D9V3, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               4                66
  CLUS_2              14                50
  CLUS_3               0                11
  CLUS_4               0                 8
D9V4, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               2                22
  CLUS_2               5                43
  CLUS_3               1                17
  CLUS_4               3                11
D9V5, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               2                 6
  CLUS_3               1                 9
  CLUS_4               8                71
D9V6, binary
                   cls
clus                  0   1
  FAM123B MUTATED    17   1
  FAM123B WILD-TYPE 120   4
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     17    1
  FAM123B WILD-TYPE  120    4
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              17               120
  CLUS_3               1                 4
D9V7, multiclass
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  CLUS_1              17               120
  CLUS_2               1                 2
  CLUS_3               0                 2

Clustering(10) Variable = TTN MUTATION ANALYSIS
D10V1, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          20            10
  CLUS_2          17            41
  CLUS_3          15            14
  CLUS_4           9            15
D10V2, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          17            36
  CLUS_2          27            16
  CLUS_3          17            28
D10V3, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          21            49
  CLUS_2          39            25
  CLUS_3           3             8
  CLUS_4           5             3
D10V4, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          14            10
  CLUS_2          21            27
  CLUS_3           6            12
  CLUS_4           7             7
D10V5, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1           2             5
  CLUS_2           4             4
  CLUS_3           6             4
  CLUS_4          36            43
D10V6, binary
               cls
clus             0  1
  TTN MUTATED   60  3
  TTN WILD-TYPE 77  2
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     60    3
  TTN WILD-TYPE   77    2
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          60            77
  CLUS_3           3             2
D10V7, multiclass
        clus
vv       TTN MUTATED TTN WILD-TYPE
  CLUS_1          60            77
  CLUS_2           2             1
  CLUS_3           1             1

Clustering(11) Variable = WBSCR17 MUTATION ANALYSIS
D11V1, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               4                26
  CLUS_2               4                54
  CLUS_3               5                24
  CLUS_4               3                21
D11V2, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               4                49
  CLUS_2               7                36
  CLUS_3               5                40
D11V3, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               5                65
  CLUS_2              10                54
  CLUS_3               1                10
  CLUS_4               1                 7
D11V4, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               3                21
  CLUS_2               5                43
  CLUS_3               1                17
  CLUS_4               2                12
D11V5, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               8                71
D11V6, binary
                   cls
clus                  0   1
  WBSCR17 MUTATED    15   2
  WBSCR17 WILD-TYPE 122   3
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     15    2
  WBSCR17 WILD-TYPE  122    3
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1              15               122
  CLUS_3               2                 3
D11V7, multiclass
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  CLUS_1              15               122
  CLUS_2               1                 2
  CLUS_3               1                 1

Clustering(12) Variable = ACVR1B MUTATION ANALYSIS
D12V1, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3               27
  CLUS_2              2               56
  CLUS_3              4               25
  CLUS_4              1               23
D12V2, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3               50
  CLUS_2              5               38
  CLUS_3              2               43
D12V3, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1               69
  CLUS_2             10               54
  CLUS_3              2                9
  CLUS_4              0                8
D12V4, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              2               22
  CLUS_2              5               43
  CLUS_3              1               17
  CLUS_4              3               11
D12V5, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1                6
  CLUS_2              2                6
  CLUS_3              1                9
  CLUS_4              7               72
D12V6, binary
                  cls
clus                 0   1
  ACVR1B MUTATED    13   0
  ACVR1B WILD-TYPE 124   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED     13    0
  ACVR1B WILD-TYPE  124    5
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1             13              124
  CLUS_3              0                5
D12V7, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1             12              125
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(13) Variable = TNFRSF10C MUTATION ANALYSIS
D13V1, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 2                  28
  CLUS_2                 2                  56
  CLUS_3                 0                  29
  CLUS_4                 2                  22
D13V2, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 2                  51
  CLUS_2                 2                  41
  CLUS_3                 2                  43
D13V3, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 6                  64
  CLUS_2                 0                  64
  CLUS_3                 0                  11
  CLUS_4                 0                   8
D13V4, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 2                  22
  CLUS_2                 2                  46
  CLUS_3                 0                  18
  CLUS_4                 1                  13
D13V5, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 0                   7
  CLUS_2                 0                   8
  CLUS_3                 2                   8
  CLUS_4                 3                  76
D13V6, binary
                     cls
clus                    0   1
  TNFRSF10C MUTATED     6   0
  TNFRSF10C WILD-TYPE 131   5
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      6    0
  TNFRSF10C WILD-TYPE  131    5
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 6                 131
  CLUS_3                 0                   5
D13V7, multiclass
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  CLUS_1                 6                 131
  CLUS_2                 0                   3
  CLUS_3                 0                   2

Clustering(14) Variable = SMAD2 MUTATION ANALYSIS
D14V1, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              29
  CLUS_2             1              57
  CLUS_3             5              24
  CLUS_4             2              22
D14V2, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             5              38
  CLUS_3             1              44
D14V3, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             7              57
  CLUS_3             2               9
  CLUS_4             0               8
D14V4, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             4              44
  CLUS_3             1              17
  CLUS_4             1              13
D14V5, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             5              74
D14V6, binary
                 cls
clus                0   1
  SMAD2 MUTATED     8   1
  SMAD2 WILD-TYPE 129   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      8    1
  SMAD2 WILD-TYPE  129    4
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             8             129
  CLUS_3             1               4
D14V7, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             9             128
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(15) Variable = MAP2K4 MUTATION ANALYSIS
D15V1, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              3               27
  CLUS_2              2               56
  CLUS_3              3               26
  CLUS_4              1               23
D15V2, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              5               38
  CLUS_3              3               42
D15V3, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              1               69
  CLUS_2              8               56
  CLUS_3              0               11
  CLUS_4              0                8
D15V4, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              2               22
  CLUS_2              3               45
  CLUS_3              0               18
  CLUS_4              2               12
D15V5, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              5               74
D15V6, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED     8   0
  MAP2K4 WILD-TYPE 129   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      8    0
  MAP2K4 WILD-TYPE  129    5
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              8              129
  CLUS_3              0                5
D15V7, multiclass
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  CLUS_1              7              130
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(16) Variable = PCBP1 MUTATION ANALYSIS
D16V1, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             0              30
  CLUS_2             2              56
  CLUS_3             2              27
  CLUS_4             0              24
D16V2, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             0              43
  CLUS_3             1              44
D16V3, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             1              63
  CLUS_3             1              10
  CLUS_4             0               8
D16V4, multiclass
[1] "Remove cluster labels:" "PCBP1 MUTATED"         
clus
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              2             102 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
D16V5, multiclass
[1] "Remove cluster labels:" "PCBP1 MUTATED"         
clus
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              2             102 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
D16V6, binary
                 cls
clus                0   1
  PCBP1 MUTATED     3   0
  PCBP1 WILD-TYPE 134   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      3    0
  PCBP1 WILD-TYPE  134    5
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             3             134
  CLUS_3             0               5
D16V7, multiclass
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  CLUS_1             3             134
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(17) Variable = FAT4 MUTATION ANALYSIS
D17V1, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1           11             19
  CLUS_2            6             52
  CLUS_3            5             24
  CLUS_4            2             22
D17V2, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1            6             47
  CLUS_2           14             29
  CLUS_3            4             41
D17V3, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1            4             66
  CLUS_2           22             42
  CLUS_3            1             10
  CLUS_4            1              7
D17V4, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1            3             21
  CLUS_2           13             35
  CLUS_3            2             16
  CLUS_4            3             11
D17V5, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4           19             60
D17V6, binary
                cls
clus               0   1
  FAT4 MUTATED    25   2
  FAT4 WILD-TYPE 112   3
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     25    2
  FAT4 WILD-TYPE  112    3
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1           25            112
  CLUS_3            2              3
D17V7, multiclass
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  CLUS_1           24            113
  CLUS_2            1              2
  CLUS_3            2              0

Clustering(18) Variable = LRP1B MUTATION ANALYSIS
D18V1, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            10              20
  CLUS_2             4              54
  CLUS_3             9              20
  CLUS_4             5              19
D18V2, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             6              47
  CLUS_2            17              26
  CLUS_3             5              40
D18V3, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             8              62
  CLUS_2            22              42
  CLUS_3             0              11
  CLUS_4             0               8
D18V4, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             5              19
  CLUS_2             7              41
  CLUS_3             0              18
  CLUS_4             4              10
D18V5, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             2               5
  CLUS_2             3               5
  CLUS_3             2               8
  CLUS_4             9              70
D18V6, binary
                 cls
clus                0   1
  LRP1B MUTATED    25   1
  LRP1B WILD-TYPE 112   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     25    1
  LRP1B WILD-TYPE  112    4
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            25             112
  CLUS_3             1               4
D18V7, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            23             114
  CLUS_2             3               0
  CLUS_3             0               2

Clustering(19) Variable = NRXN1 MUTATION ANALYSIS
D19V1, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             3              27
  CLUS_2             4              54
  CLUS_3             6              23
  CLUS_4             1              23
D19V2, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             7              36
  CLUS_3             4              41
D19V3, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             3              67
  CLUS_2            12              52
  CLUS_3             0              11
  CLUS_4             2               6
D19V4, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             7              41
  CLUS_3             0              18
  CLUS_4             1              13
D19V5, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             9              70
D19V6, binary
                 cls
clus                0   1
  NRXN1 MUTATED    16   0
  NRXN1 WILD-TYPE 121   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     16    0
  NRXN1 WILD-TYPE  121    5
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1            16             121
  CLUS_3             0               5
D19V7, multiclass
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  CLUS_1            15             122
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(20) Variable = GRIA1 MUTATION ANALYSIS
D20V1, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             3              55
  CLUS_3             4              25
  CLUS_4             1              23
D20V2, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             6              47
  CLUS_2             6              37
  CLUS_3             1              44
D20V3, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             9              55
  CLUS_3             1              10
  CLUS_4             0               8
D20V4, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             7              41
  CLUS_3             0              18
  CLUS_4             2              12
D20V5, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             6              73
D20V6, binary
                 cls
clus                0   1
  GRIA1 MUTATED    11   0
  GRIA1 WILD-TYPE 126   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     11    0
  GRIA1 WILD-TYPE  126    5
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1            11             126
  CLUS_3             0               5
D20V7, multiclass
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  CLUS_1             8             129
  CLUS_2             3               0
  CLUS_3             0               2

Clustering(21) Variable = SDK1 MUTATION ANALYSIS
D21V1, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1           11             19
  CLUS_2            6             52
  CLUS_3            4             25
  CLUS_4            2             22
D21V2, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1            3             50
  CLUS_2           14             29
  CLUS_3            6             39
D21V3, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1           10             60
  CLUS_2           14             50
  CLUS_3            0             11
  CLUS_4            1              7
D21V4, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1            6             18
  CLUS_2            7             41
  CLUS_3            0             18
  CLUS_4            2             12
D21V5, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            2              6
  CLUS_3            2              8
  CLUS_4           11             68
D21V6, binary
                cls
clus               0   1
  SDK1 MUTATED    22   0
  SDK1 WILD-TYPE 115   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     22    0
  SDK1 WILD-TYPE  115    5
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1           22            115
  CLUS_3            0              5
D21V7, multiclass
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  CLUS_1           21            116
  CLUS_2            1              2
  CLUS_3            0              2

Clustering(22) Variable = SOX9 MUTATION ANALYSIS
D22V1, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            2             28
  CLUS_2            3             55
  CLUS_3            0             29
  CLUS_4            3             21
D22V2, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            3             50
  CLUS_2            1             42
  CLUS_3            4             41
D22V3, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            6             58
  CLUS_3            0             11
  CLUS_4            0              8
D22V4, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            0             24
  CLUS_2            3             45
  CLUS_3            0             18
  CLUS_4            2             12
D22V5, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            4             75
D22V6, binary
                cls
clus               0   1
  SOX9 MUTATED     9   0
  SOX9 WILD-TYPE 128   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      9    0
  SOX9 WILD-TYPE  128    5
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            9            128
  CLUS_3            0              5
D22V7, multiclass
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  CLUS_1            9            128
  CLUS_2            0              3
  CLUS_3            0              2

Clustering(23) Variable = DMD MUTATION ANALYSIS
D23V1, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1          10            20
  CLUS_2           5            53
  CLUS_3           7            22
  CLUS_4           3            21
D23V2, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1           4            49
  CLUS_2          14            29
  CLUS_3           7            38
D23V3, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1           8            62
  CLUS_2          19            45
  CLUS_3           0            11
  CLUS_4           0             8
D23V4, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1           4            20
  CLUS_2           7            41
  CLUS_3           3            15
  CLUS_4           5             9
D23V5, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1           0             7
  CLUS_2           4             4
  CLUS_3           1             9
  CLUS_4          14            65
D23V6, binary
               cls
clus              0   1
  DMD MUTATED    23   1
  DMD WILD-TYPE 114   4
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     23    1
  DMD WILD-TYPE  114    4
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1          23           114
  CLUS_3           1             4
D23V7, multiclass
        clus
vv       DMD MUTATED DMD WILD-TYPE
  CLUS_1          22           115
  CLUS_2           2             1
  CLUS_3           0             2

Clustering(24) Variable = CNTN6 MUTATION ANALYSIS
D24V1, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             2              56
  CLUS_3             4              25
  CLUS_4             2              22
D24V2, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             7              36
  CLUS_3             2              43
D24V3, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             9              55
  CLUS_3             1              10
  CLUS_4             0               8
D24V4, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             4              44
  CLUS_3             2              16
  CLUS_4             2              12
D24V5, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2               6
  CLUS_3             0              10
  CLUS_4             7              72
D24V6, binary
                 cls
clus                0   1
  CNTN6 MUTATED    12   0
  CNTN6 WILD-TYPE 125   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     12    0
  CNTN6 WILD-TYPE  125    5
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1            12             125
  CLUS_3             0               5
D24V7, multiclass
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  CLUS_1            11             126
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(25) Variable = GABRA5 MUTATION ANALYSIS
D25V1, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              1               29
  CLUS_2              4               54
  CLUS_3              2               27
  CLUS_4              0               24
D25V2, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              2               41
  CLUS_3              2               43
D25V3, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              4               66
  CLUS_2              4               60
  CLUS_3              0               11
  CLUS_4              0                8
D25V4, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              0               24
  CLUS_2              1               47
  CLUS_3              2               16
  CLUS_4              2               12
D25V5, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              4               75
D25V6, binary
                  cls
clus                 0   1
  GABRA5 MUTATED     5   1
  GABRA5 WILD-TYPE 132   4
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      5    1
  GABRA5 WILD-TYPE  132    4
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              5              132
  CLUS_3              1                4
D25V7, multiclass
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  CLUS_1              5              132
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(26) Variable = OR2M4 MUTATION ANALYSIS
D26V1, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             0              58
  CLUS_3             1              28
  CLUS_4             1              23
D26V2, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             4              39
  CLUS_3             2              43
D26V3, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             6              58
  CLUS_3             0              11
  CLUS_4             1               7
D26V4, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             3              45
  CLUS_3             0              18
  CLUS_4             1              13
D26V5, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             5              74
D26V6, binary
                 cls
clus                0   1
  OR2M4 MUTATED     8   0
  OR2M4 WILD-TYPE 129   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      8    0
  OR2M4 WILD-TYPE  129    5
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             8             129
  CLUS_3             0               5
D26V7, multiclass
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  CLUS_1             7             130
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(27) Variable = OR6N1 MUTATION ANALYSIS
D27V1, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             0              58
  CLUS_3             1              28
  CLUS_4             0              24
D27V2, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             0              53
  CLUS_2             5              38
  CLUS_3             1              44
D27V3, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             0              70
  CLUS_2             8              56
  CLUS_3             0              11
  CLUS_4             0               8
D27V4, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             3              45
  CLUS_3             1              17
  CLUS_4             1              13
D27V5, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             5              74
D27V6, binary
                 cls
clus                0   1
  OR6N1 MUTATED     6   1
  OR6N1 WILD-TYPE 131   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      6    1
  OR6N1 WILD-TYPE  131    4
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             6             131
  CLUS_3             1               4
D27V7, multiclass
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  CLUS_1             7             130
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(28) Variable = PCDH9 MUTATION ANALYSIS
D28V1, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             3              27
  CLUS_2             4              54
  CLUS_3             6              23
  CLUS_4             3              21
D28V2, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             6              47
  CLUS_2             6              37
  CLUS_3             4              41
D28V3, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             6              64
  CLUS_2            10              54
  CLUS_3             0              11
  CLUS_4             0               8
D28V4, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             4              44
  CLUS_3             1              17
  CLUS_4             2              12
D28V5, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             6              73
D28V6, binary
                 cls
clus                0   1
  PCDH9 MUTATED    14   0
  PCDH9 WILD-TYPE 123   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     14    0
  PCDH9 WILD-TYPE  123    5
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1            14             123
  CLUS_3             0               5
D28V7, multiclass
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  CLUS_1            13             124
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(29) Variable = TXNDC3 MUTATION ANALYSIS
D29V1, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              4               26
  CLUS_2              1               57
  CLUS_3              3               26
  CLUS_4              1               23
D29V2, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              5               38
  CLUS_3              2               43
D29V3, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              1               69
  CLUS_2              7               57
  CLUS_3              1               10
  CLUS_4              1                7
D29V4, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              1               23
  CLUS_2              2               46
  CLUS_3              2               16
  CLUS_4              0               14
D29V5, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              3               76
D29V6, binary
                  cls
clus                 0   1
  TXNDC3 MUTATED     9   0
  TXNDC3 WILD-TYPE 128   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      9    0
  TXNDC3 WILD-TYPE  128    5
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              9              128
  CLUS_3              0                5
D29V7, multiclass
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  CLUS_1              8              129
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(30) Variable = MGC26647 MUTATION ANALYSIS
D30V1, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                2                 28
  CLUS_2                1                 57
  CLUS_3                3                 26
  CLUS_4                1                 23
D30V2, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                2                 51
  CLUS_2                3                 40
  CLUS_3                2                 43
D30V3, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                3                 67
  CLUS_2                4                 60
  CLUS_3                0                 11
  CLUS_4                0                  8
D30V4, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                3                 45
  CLUS_3                1                 17
  CLUS_4                1                 13
D30V5, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                0                  7
  CLUS_2                1                  7
  CLUS_3                2                  8
  CLUS_4                4                 75
D30V6, binary
                    cls
clus                   0   1
  MGC26647 MUTATED     5   0
  MGC26647 WILD-TYPE 132   5
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      5    0
  MGC26647 WILD-TYPE  132    5
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                5                132
  CLUS_3                0                  5
D30V7, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  CLUS_1                4                133
  CLUS_2                1                  2
  CLUS_3                0                  2

Clustering(31) Variable = FAM22F MUTATION ANALYSIS
D31V1, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              1               29
  CLUS_2              4               54
  CLUS_3              2               27
  CLUS_4              1               23
D31V2, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              1               52
  CLUS_2              3               40
  CLUS_3              4               41
D31V3, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              5               65
  CLUS_2              3               61
  CLUS_3              0               11
  CLUS_4              0                8
D31V4, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              3               21
  CLUS_2              2               46
  CLUS_3              0               18
  CLUS_4              1               13
D31V5, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              4               75
D31V6, binary
                  cls
clus                 0   1
  FAM22F MUTATED     7   0
  FAM22F WILD-TYPE 130   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      7    0
  FAM22F WILD-TYPE  130    5
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              7              130
  CLUS_3              0                5
D31V7, multiclass
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  CLUS_1              7              130
  CLUS_2              0                3
  CLUS_3              0                2

Clustering(32) Variable = ACVR2A MUTATION ANALYSIS
D32V1, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              5               25
  CLUS_2              1               57
  CLUS_3              1               28
  CLUS_4              0               24
D32V2, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              2               51
  CLUS_2              4               39
  CLUS_3              1               44
D32V3, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              1               69
  CLUS_2              7               57
  CLUS_3              0               11
  CLUS_4              0                8
D32V4, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              0               24
  CLUS_2              4               44
  CLUS_3              0               18
  CLUS_4              2               12
D32V5, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              5               74
D32V6, binary
                  cls
clus                 0   1
  ACVR2A MUTATED     8   0
  ACVR2A WILD-TYPE 129   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      8    0
  ACVR2A WILD-TYPE  129    5
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              8              129
  CLUS_3              0                5
D32V7, multiclass
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  CLUS_1              7              130
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(33) Variable = TCF7L2 MUTATION ANALYSIS
D33V1, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              2               28
  CLUS_2              1               57
  CLUS_3              4               25
  CLUS_4              1               23
D33V2, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              2               41
  CLUS_3              2               43
D33V3, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              6               58
  CLUS_3              2                9
  CLUS_4              1                7
D33V4, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              1               23
  CLUS_2              5               43
  CLUS_3              1               17
  CLUS_4              1               13
D33V5, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              7               72
D33V6, binary
                  cls
clus                 0   1
  TCF7L2 MUTATED     9   0
  TCF7L2 WILD-TYPE 128   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED      9    0
  TCF7L2 WILD-TYPE  128    5
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              9              128
  CLUS_3              0                5
D33V7, multiclass
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  CLUS_1              8              129
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(34) Variable = AFF2 MUTATION ANALYSIS
D34V1, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            5             25
  CLUS_2            1             57
  CLUS_3            3             26
  CLUS_4            5             19
D34V2, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            6             37
  CLUS_3            7             38
D34V3, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            6             64
  CLUS_2            8             56
  CLUS_3            0             11
  CLUS_4            0              8
D34V4, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            4             20
  CLUS_2            3             45
  CLUS_3            1             17
  CLUS_4            1             13
D34V5, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            5             74
D34V6, binary
                cls
clus               0   1
  AFF2 MUTATED    13   1
  AFF2 WILD-TYPE 124   4
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     13    1
  AFF2 WILD-TYPE  124    4
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1           13            124
  CLUS_3            1              4
D34V7, multiclass
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  CLUS_1           13            124
  CLUS_2            1              2
  CLUS_3            0              2

Clustering(35) Variable = CNBD1 MUTATION ANALYSIS
D35V1, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             2              28
  CLUS_2             1              57
  CLUS_3             2              27
  CLUS_4             1              23
D35V2, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             2              41
  CLUS_3             1              44
D35V3, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             5              59
  CLUS_3             0              11
  CLUS_4             0               8
D35V4, multiclass
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2             102 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D35V5, multiclass
[1] "Remove cluster labels:" "CNBD1 MUTATED"         
clus
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              2             102 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
D35V6, binary
                 cls
clus                0   1
  CNBD1 MUTATED     6   0
  CNBD1 WILD-TYPE 131   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      6    0
  CNBD1 WILD-TYPE  131    5
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             6             131
  CLUS_3             0               5
D35V7, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             5             132
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(36) Variable = OTOL1 MUTATION ANALYSIS
D36V1, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             0              30
  CLUS_2             2              56
  CLUS_3             2              27
  CLUS_4             0              24
D36V2, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             1              42
  CLUS_3             1              44
D36V3, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             3              61
  CLUS_3             0              11
  CLUS_4             0               8
D36V4, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             5              43
  CLUS_3             0              18
  CLUS_4             0              14
D36V5, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             5              74
D36V6, binary
                 cls
clus                0   1
  OTOL1 MUTATED     7   0
  OTOL1 WILD-TYPE 130   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      7    0
  OTOL1 WILD-TYPE  130    5
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             7             130
  CLUS_3             0               5
D36V7, multiclass
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  CLUS_1             6             131
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(37) Variable = KCNA4 MUTATION ANALYSIS
D37V1, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             3              55
  CLUS_3             1              28
  CLUS_4             0              24
D37V2, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             6              37
  CLUS_3             1              44
D37V3, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             8              56
  CLUS_3             0              11
  CLUS_4             0               8
D37V4, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             3              21
  CLUS_2             1              47
  CLUS_3             0              18
  CLUS_4             3              11
D37V5, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2               6
  CLUS_3             2               8
  CLUS_4             3              76
D37V6, binary
                 cls
clus                0   1
  KCNA4 MUTATED     8   0
  KCNA4 WILD-TYPE 129   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      8    0
  KCNA4 WILD-TYPE  129    5
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             8             129
  CLUS_3             0               5
D37V7, multiclass
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  CLUS_1             8             129
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(38) Variable = ISL1 MUTATION ANALYSIS
D38V1, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            4             26
  CLUS_2            1             57
  CLUS_3            1             28
  CLUS_4            2             22
D38V2, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            3             50
  CLUS_2            4             39
  CLUS_3            1             44
D38V3, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            3             67
  CLUS_2            5             59
  CLUS_3            0             11
  CLUS_4            0              8
D38V4, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            2             22
  CLUS_2            3             45
  CLUS_3            0             18
  CLUS_4            1             13
D38V5, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            6             73
D38V6, binary
                cls
clus               0   1
  ISL1 MUTATED     8   0
  ISL1 WILD-TYPE 129   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      8    0
  ISL1 WILD-TYPE  129    5
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            8            129
  CLUS_3            0              5
D38V7, multiclass
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  CLUS_1            7            130
  CLUS_2            1              2
  CLUS_3            0              2

Clustering(39) Variable = MGC42105 MUTATION ANALYSIS
D39V1, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                5                 25
  CLUS_2                1                 57
  CLUS_3                4                 25
  CLUS_4                0                 24
D39V2, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                3                 50
  CLUS_2                6                 37
  CLUS_3                1                 44
D39V3, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                7                 57
  CLUS_3                0                 11
  CLUS_4                1                  7
D39V4, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                3                 45
  CLUS_3                1                 17
  CLUS_4                2                 12
D39V5, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                1                  7
  CLUS_3                0                 10
  CLUS_4                4                 75
D39V6, binary
                    cls
clus                   0   1
  MGC42105 MUTATED    10   0
  MGC42105 WILD-TYPE 127   5
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED     10    0
  MGC42105 WILD-TYPE  127    5
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1               10                127
  CLUS_3                0                  5
D39V7, multiclass
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  CLUS_1               10                127
  CLUS_2                0                  3
  CLUS_3                0                  2

Clustering(40) Variable = ACOT4 MUTATION ANALYSIS
D40V1, multiclass
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             1              29
  CLUS_2             1              57
  CLUS_3             0              29
  CLUS_4             1              23
D40V2, multiclass
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             2              41
  CLUS_3             0              45
D40V3, multiclass
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             2              62
  CLUS_3             0              11
  CLUS_4             0               8
D40V4, multiclass
[1] "Remove cluster labels:" "ACOT4 MUTATED"         
clus
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              1             103 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3856      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3872 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A022      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
D40V5, multiclass
[1] "Remove cluster labels:" "ACOT4 MUTATED"         
clus
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              1             103 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3856      TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3872 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A022      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
D40V6, binary
                 cls
clus                0   1
  ACOT4 MUTATED     3   0
  ACOT4 WILD-TYPE 134   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      3    0
  ACOT4 WILD-TYPE  134    5
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             3             134
  CLUS_3             0               5
D40V7, multiclass
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  CLUS_1             3             134
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(41) Variable = CDH11 MUTATION ANALYSIS
D41V1, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             3              55
  CLUS_3             4              25
  CLUS_4             0              24
D41V2, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             6              37
  CLUS_3             3              42
D41V3, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             9              55
  CLUS_3             0              11
  CLUS_4             0               8
D41V4, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             4              44
  CLUS_3             1              17
  CLUS_4             2              12
D41V5, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2               6
  CLUS_3             0              10
  CLUS_4             6              73
D41V6, binary
                 cls
clus                0   1
  CDH11 MUTATED    10   1
  CDH11 WILD-TYPE 127   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED     10    1
  CDH11 WILD-TYPE  127    4
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1            10             127
  CLUS_3             1               4
D41V7, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1            11             126
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(42) Variable = ATM MUTATION ANALYSIS
D42V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           5            25
  CLUS_2           4            54
  CLUS_3           7            22
  CLUS_4           2            22
D42V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           5            48
  CLUS_2           8            35
  CLUS_3           5            40
D42V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           4            66
  CLUS_2          17            47
  CLUS_3           0            11
  CLUS_4           0             8
D42V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1            23
  CLUS_2           9            39
  CLUS_3           1            17
  CLUS_4           2            12
D42V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1             6
  CLUS_2           1             7
  CLUS_3           0            10
  CLUS_4          11            68
D42V6, binary
               cls
clus              0   1
  ATM MUTATED    20   0
  ATM WILD-TYPE 117   5
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     20    0
  ATM WILD-TYPE  117    5
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          20           117
  CLUS_3           0             5
D42V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          18           119
  CLUS_2           2             1
  CLUS_3           0             2

Clustering(43) Variable = TPTE MUTATION ANALYSIS
D43V1, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            3             27
  CLUS_2            0             58
  CLUS_3            4             25
  CLUS_4            2             22
D43V2, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            2             51
  CLUS_2            5             38
  CLUS_3            2             43
D43V3, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            2             68
  CLUS_2            8             56
  CLUS_3            1             10
  CLUS_4            0              8
D43V4, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            0             24
  CLUS_2            5             43
  CLUS_3            0             18
  CLUS_4            1             13
D43V5, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            5             74
D43V6, binary
                cls
clus               0   1
  TPTE MUTATED    10   0
  TPTE WILD-TYPE 127   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED     10    0
  TPTE WILD-TYPE  127    5
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1           10            127
  CLUS_3            0              5
D43V7, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  CLUS_1            9            128
  CLUS_2            1              2
  CLUS_3            0              2

Clustering(44) Variable = BTNL8 MUTATION ANALYSIS
D44V1, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             2              28
  CLUS_2             1              57
  CLUS_3             0              29
  CLUS_4             0              24
D44V2, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             2              41
  CLUS_3             0              45
D44V3, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             0              70
  CLUS_2             3              61
  CLUS_3             0              11
  CLUS_4             0               8
D44V4, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             1              47
  CLUS_3             0              18
  CLUS_4             1              13
D44V5, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             3              76
D44V6, binary
                 cls
clus                0   1
  BTNL8 MUTATED     3   0
  BTNL8 WILD-TYPE 134   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      3    0
  BTNL8 WILD-TYPE  134    5
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             3             134
  CLUS_3             0               5
D44V7, multiclass
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  CLUS_1             3             134
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(45) Variable = KLHL4 MUTATION ANALYSIS
D45V1, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             1              57
  CLUS_3             4              25
  CLUS_4             0              24
D45V2, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             5              38
  CLUS_3             1              44
D45V3, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             9              55
  CLUS_3             0              11
  CLUS_4             2               6
D45V4, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             3              45
  CLUS_3             2              16
  CLUS_4             3              11
D45V5, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             8              71
D45V6, binary
                 cls
clus                0   1
  KLHL4 MUTATED     8   1
  KLHL4 WILD-TYPE 129   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      8    1
  KLHL4 WILD-TYPE  129    4
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             8             129
  CLUS_3             1               4
D45V7, multiclass
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  CLUS_1             8             129
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(46) Variable = ROBO1 MUTATION ANALYSIS
D46V1, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             4              54
  CLUS_3             4              25
  CLUS_4             0              24
D46V2, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             8              35
  CLUS_3             2              43
D46V3, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             3              67
  CLUS_2            10              54
  CLUS_3             0              11
  CLUS_4             1               7
D46V4, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             4              20
  CLUS_2             3              45
  CLUS_3             1              17
  CLUS_4             3              11
D46V5, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2               6
  CLUS_3             0              10
  CLUS_4             9              70
D46V6, binary
                 cls
clus                0   1
  ROBO1 MUTATED    13   0
  ROBO1 WILD-TYPE 124   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED     13    0
  ROBO1 WILD-TYPE  124    5
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1            13             124
  CLUS_3             0               5
D46V7, multiclass
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  CLUS_1            12             125
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(47) Variable = GGT1 MUTATION ANALYSIS
D47V1, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            139 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3864 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AY-4070     TCGA-AY-4071 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D47V2, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            139 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3864 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AY-4070     TCGA-AY-4071 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D47V3, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            0             70
  CLUS_2            3             61
  CLUS_3            0             11
  CLUS_4            0              8
D47V4, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            102 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3848 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01X     TCGA-AA-A022 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D47V5, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            102 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3848 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01X     TCGA-AA-A022 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D47V6, binary
                cls
clus               0   1
  GGT1 MUTATED     3   0
  GGT1 WILD-TYPE 134   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      3    0
  GGT1 WILD-TYPE  134    5
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            3            134
  CLUS_3            0              5
D47V7, multiclass
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  CLUS_1            3            134
  CLUS_2            0              3
  CLUS_3            0              2

Clustering(48) Variable = FLG MUTATION ANALYSIS
D48V1, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          10            20
  CLUS_2           2            56
  CLUS_3           8            21
  CLUS_4           2            22
D48V2, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           4            49
  CLUS_2          13            30
  CLUS_3           5            40
D48V3, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           3            67
  CLUS_2          18            46
  CLUS_3           1            10
  CLUS_4           3             5
D48V4, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           4            20
  CLUS_2           6            42
  CLUS_3           2            16
  CLUS_4           5             9
D48V5, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1           0             7
  CLUS_2           3             5
  CLUS_3           1             9
  CLUS_4          13            66
D48V6, binary
               cls
clus              0   1
  FLG MUTATED    23   1
  FLG WILD-TYPE 114   4
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     23    1
  FLG WILD-TYPE  114    4
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          23           114
  CLUS_3           1             4
D48V7, multiclass
        clus
vv       FLG MUTATED FLG WILD-TYPE
  CLUS_1          23           114
  CLUS_2           1             2
  CLUS_3           0             2

Clustering(49) Variable = PCDHB2 MUTATION ANALYSIS
D49V1, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              6               24
  CLUS_2              2               56
  CLUS_3              4               25
  CLUS_4              1               23
D49V2, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              9               34
  CLUS_3              2               43
D49V3, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              3               67
  CLUS_2             10               54
  CLUS_3              0               11
  CLUS_4              0                8
D49V4, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              1               23
  CLUS_2              5               43
  CLUS_3              0               18
  CLUS_4              2               12
D49V5, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              7               72
D49V6, binary
                  cls
clus                 0   1
  PCDHB2 MUTATED    11   0
  PCDHB2 WILD-TYPE 126   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED     11    0
  PCDHB2 WILD-TYPE  126    5
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1             11              126
  CLUS_3              0                5
D49V7, multiclass
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  CLUS_1             10              127
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(50) Variable = POSTN MUTATION ANALYSIS
D50V1, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             3              27
  CLUS_2             2              56
  CLUS_3             4              25
  CLUS_4             1              23
D50V2, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             2              51
  CLUS_2             4              39
  CLUS_3             4              41
D50V3, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             2              68
  CLUS_2             9              55
  CLUS_3             0              11
  CLUS_4             0               8
D50V4, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             2              22
  CLUS_2             2              46
  CLUS_3             0              18
  CLUS_4             1              13
D50V5, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             3              76
D50V6, binary
                 cls
clus                0   1
  POSTN MUTATED    10   0
  POSTN WILD-TYPE 127   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED     10    0
  POSTN WILD-TYPE  127    5
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1            10             127
  CLUS_3             0               5
D50V7, multiclass
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  CLUS_1            10             127
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(51) Variable = OR51V1 MUTATION ANALYSIS
D51V1, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              4               26
  CLUS_2              0               58
  CLUS_3              3               26
  CLUS_4              0               24
D51V2, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              6               37
  CLUS_3              0               45
D51V3, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              0               70
  CLUS_2              9               55
  CLUS_3              0               11
  CLUS_4              0                8
D51V4, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              2               22
  CLUS_2              5               43
  CLUS_3              1               17
  CLUS_4              1               13
D51V5, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              9               70
D51V6, binary
                  cls
clus                 0   1
  OR51V1 MUTATED     9   0
  OR51V1 WILD-TYPE 128   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      9    0
  OR51V1 WILD-TYPE  128    5
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              9              128
  CLUS_3              0                5
D51V7, multiclass
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  CLUS_1              8              129
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(52) Variable = GRIK3 MUTATION ANALYSIS
D52V1, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             3              27
  CLUS_2             3              55
  CLUS_3             5              24
  CLUS_4             2              22
D52V2, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             6              37
  CLUS_3             6              39
D52V3, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             5              65
  CLUS_2             8              56
  CLUS_3             0              11
  CLUS_4             1               7
D52V4, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             3              21
  CLUS_2             4              44
  CLUS_3             1              17
  CLUS_4             3              11
D52V5, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             7              72
D52V6, binary
                 cls
clus                0   1
  GRIK3 MUTATED    11   0
  GRIK3 WILD-TYPE 126   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     11    0
  GRIK3 WILD-TYPE  126    5
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1            11             126
  CLUS_3             0               5
D52V7, multiclass
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  CLUS_1            11             126
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(53) Variable = LRRN3 MUTATION ANALYSIS
D53V1, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             5              25
  CLUS_2             1              57
  CLUS_3             1              28
  CLUS_4             0              24
D53V2, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             5              38
  CLUS_3             1              44
D53V3, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             6              58
  CLUS_3             1              10
  CLUS_4             0               8
D53V4, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             2              46
  CLUS_3             1              17
  CLUS_4             3              11
D53V5, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             5              74
D53V6, binary
                 cls
clus                0   1
  LRRN3 MUTATED     6   1
  LRRN3 WILD-TYPE 131   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      6    1
  LRRN3 WILD-TYPE  131    4
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             6             131
  CLUS_3             1               4
D53V7, multiclass
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  CLUS_1             7             130
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(54) Variable = PRDM9 MUTATION ANALYSIS
D54V1, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             6              24
  CLUS_2             0              58
  CLUS_3             3              26
  CLUS_4             1              23
D54V2, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             4              39
  CLUS_3             4              41
D54V3, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             8              56
  CLUS_3             1              10
  CLUS_4             0               8
D54V4, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             4              20
  CLUS_2             4              44
  CLUS_3             0              18
  CLUS_4             1              13
D54V5, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             8              71
D54V6, binary
                 cls
clus                0   1
  PRDM9 MUTATED    11   0
  PRDM9 WILD-TYPE 126   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED     11    0
  PRDM9 WILD-TYPE  126    5
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1            11             126
  CLUS_3             0               5
D54V7, multiclass
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  CLUS_1            10             127
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(55) Variable = ADAM29 MUTATION ANALYSIS
D55V1, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              3               27
  CLUS_2              3               55
  CLUS_3              2               27
  CLUS_4              1               23
D55V2, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              5               48
  CLUS_2              3               40
  CLUS_3              1               44
D55V3, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              4               60
  CLUS_3              2                9
  CLUS_4              0                8
D55V4, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              1               23
  CLUS_2              1               47
  CLUS_3              0               18
  CLUS_4              1               13
D55V5, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              1               78
D55V6, binary
                  cls
clus                 0   1
  ADAM29 MUTATED     7   0
  ADAM29 WILD-TYPE 130   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      7    0
  ADAM29 WILD-TYPE  130    5
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              7              130
  CLUS_3              0                5
D55V7, multiclass
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  CLUS_1              7              130
  CLUS_2              0                3
  CLUS_3              0                2

Clustering(56) Variable = KIAA1486 MUTATION ANALYSIS
D56V1, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                2                 28
  CLUS_2                2                 56
  CLUS_3                2                 27
  CLUS_4                1                 23
D56V2, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                3                 50
  CLUS_2                3                 40
  CLUS_3                1                 44
D56V3, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                3                 67
  CLUS_2                5                 59
  CLUS_3                0                 11
  CLUS_4                1                  7
D56V4, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                4                 44
  CLUS_3                0                 18
  CLUS_4                2                 12
D56V5, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                0                  7
  CLUS_2                1                  7
  CLUS_3                0                 10
  CLUS_4                6                 73
D56V6, binary
                    cls
clus                   0   1
  KIAA1486 MUTATED     8   0
  KIAA1486 WILD-TYPE 129   5
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      8    0
  KIAA1486 WILD-TYPE  129    5
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                8                129
  CLUS_3                0                  5
D56V7, multiclass
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  CLUS_1                7                130
  CLUS_2                1                  2
  CLUS_3                0                  2

Clustering(57) Variable = PSG8 MUTATION ANALYSIS
D57V1, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            1             29
  CLUS_2            1             57
  CLUS_3            2             27
  CLUS_4            2             22
D57V2, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            2             41
  CLUS_3            3             42
D57V3, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            2             68
  CLUS_2            4             60
  CLUS_3            2              9
  CLUS_4            0              8
D57V4, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            0             24
  CLUS_2            3             45
  CLUS_3            0             18
  CLUS_4            1             13
D57V5, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            3             76
D57V6, binary
                cls
clus               0   1
  PSG8 MUTATED     6   1
  PSG8 WILD-TYPE 131   4
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      6    1
  PSG8 WILD-TYPE  131    4
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            6            131
  CLUS_3            1              4
D57V7, multiclass
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  CLUS_1            6            131
  CLUS_2            0              3
  CLUS_3            1              1

Clustering(58) Variable = NCKAP5 MUTATION ANALYSIS
D58V1, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              4               26
  CLUS_2              2               56
  CLUS_3              4               25
  CLUS_4              1               23
D58V2, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              7               36
  CLUS_3              1               44
D58V3, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              9               55
  CLUS_3              0               11
  CLUS_4              1                7
D58V4, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              2               22
  CLUS_2              4               44
  CLUS_3              0               18
  CLUS_4              5                9
D58V5, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4             10               69
D58V6, binary
                  cls
clus                 0   1
  NCKAP5 MUTATED    12   0
  NCKAP5 WILD-TYPE 125   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED     12    0
  NCKAP5 WILD-TYPE  125    5
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1             12              125
  CLUS_3              0                5
D58V7, multiclass
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  CLUS_1             11              126
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(59) Variable = C8B MUTATION ANALYSIS
D59V1, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           3            27
  CLUS_2           4            54
  CLUS_3           0            29
  CLUS_4           0            24
D59V2, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           4            49
  CLUS_2           3            40
  CLUS_3           0            45
D59V3, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           4            66
  CLUS_2           4            60
  CLUS_3           1            10
  CLUS_4           0             8
D59V4, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           2            22
  CLUS_2           3            45
  CLUS_3           2            16
  CLUS_4           0            14
D59V5, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             8
  CLUS_3           0            10
  CLUS_4           7            72
D59V6, binary
               cls
clus              0   1
  C8B MUTATED     9   0
  C8B WILD-TYPE 128   5
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      9    0
  C8B WILD-TYPE  128    5
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           9           128
  CLUS_3           0             5
D59V7, multiclass
        clus
vv       C8B MUTATED C8B WILD-TYPE
  CLUS_1           9           128
  CLUS_2           0             3
  CLUS_3           0             2

Clustering(60) Variable = DNAH5 MUTATION ANALYSIS
D60V1, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            13              17
  CLUS_2             4              54
  CLUS_3             9              20
  CLUS_4             0              24
D60V2, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             6              47
  CLUS_2            16              27
  CLUS_3             4              41
D60V3, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             7              63
  CLUS_2            19              45
  CLUS_3             2               9
  CLUS_4             0               8
D60V4, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             4              20
  CLUS_2             7              41
  CLUS_3             3              15
  CLUS_4             4              10
D60V5, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             3               5
  CLUS_3             0              10
  CLUS_4            13              66
D60V6, binary
                 cls
clus                0   1
  DNAH5 MUTATED    26   0
  DNAH5 WILD-TYPE 111   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     26    0
  DNAH5 WILD-TYPE  111    5
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            26             111
  CLUS_3             0               5
D60V7, multiclass
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  CLUS_1            25             112
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(61) Variable = CASP8 MUTATION ANALYSIS
D61V1, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             6              24
  CLUS_2             0              58
  CLUS_3             3              26
  CLUS_4             0              24
D61V2, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0              53
  CLUS_2             9              34
  CLUS_3             0              45
D61V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0              70
  CLUS_2            10              54
  CLUS_3             0              11
  CLUS_4             0               8
D61V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             3              21
  CLUS_2             2              46
  CLUS_3             0              18
  CLUS_4             3              11
D61V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             5              74
D61V6, binary
                 cls
clus                0   1
  CASP8 MUTATED     8   0
  CASP8 WILD-TYPE 129   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED      8    0
  CASP8 WILD-TYPE  129    5
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             8             129
  CLUS_3             0               5
D61V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             7             130
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(62) Variable = CCDC160 MUTATION ANALYSIS
D62V1, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               2                28
  CLUS_2               1                57
  CLUS_3               1                28
  CLUS_4               0                24
D62V2, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               1                52
  CLUS_2               1                42
  CLUS_3               2                43
D62V3, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               1                69
  CLUS_2               4                60
  CLUS_3               0                11
  CLUS_4               0                 8
D62V4, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               0                24
  CLUS_2               3                45
  CLUS_3               0                18
  CLUS_4               1                13
D62V5, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               4                75
D62V6, binary
                   cls
clus                  0   1
  CCDC160 MUTATED     5   0
  CCDC160 WILD-TYPE 132   5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      5    0
  CCDC160 WILD-TYPE  132    5
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               5               132
  CLUS_3               0                 5
D62V7, multiclass
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  CLUS_1               4               133
  CLUS_2               1                 2
  CLUS_3               0                 2

Clustering(63) Variable = DCAF4L2 MUTATION ANALYSIS
D63V1, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               2                28
  CLUS_2               1                57
  CLUS_3               4                25
  CLUS_4               0                24
D63V2, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               1                52
  CLUS_2               6                37
  CLUS_3               0                45
D63V3, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               2                68
  CLUS_2               7                57
  CLUS_3               0                11
  CLUS_4               0                 8
D63V4, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               2                22
  CLUS_2               2                46
  CLUS_3               0                18
  CLUS_4               1                13
D63V5, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                 7
  CLUS_3               1                 9
  CLUS_4               3                76
D63V6, binary
                   cls
clus                  0   1
  DCAF4L2 MUTATED     7   0
  DCAF4L2 WILD-TYPE 130   5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      7    0
  DCAF4L2 WILD-TYPE  130    5
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               7               130
  CLUS_3               0                 5
D63V7, multiclass
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  CLUS_1               7               130
  CLUS_2               0                 3
  CLUS_3               0                 2

Clustering(64) Variable = DKK2 MUTATION ANALYSIS
D64V1, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            4             26
  CLUS_2            0             58
  CLUS_3            0             29
  CLUS_4            1             23
D64V2, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            0             53
  CLUS_2            4             39
  CLUS_3            1             44
D64V3, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            1             69
  CLUS_2            4             60
  CLUS_3            0             11
  CLUS_4            0              8
D64V4, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            2             22
  CLUS_2            1             47
  CLUS_3            0             18
  CLUS_4            2             12
D64V5, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            4             75
D64V6, binary
                cls
clus               0   1
  DKK2 MUTATED     5   0
  DKK2 WILD-TYPE 132   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      5    0
  DKK2 WILD-TYPE  132    5
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            5            132
  CLUS_3            0              5
D64V7, multiclass
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  CLUS_1            5            132
  CLUS_2            0              3
  CLUS_3            0              2

Clustering(65) Variable = EPHA3 MUTATION ANALYSIS
D65V1, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             8              22
  CLUS_2             3              55
  CLUS_3             2              27
  CLUS_4             0              24
D65V2, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             8              35
  CLUS_3             2              43
D65V3, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             4              66
  CLUS_2             9              55
  CLUS_3             0              11
  CLUS_4             0               8
D65V4, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             5              43
  CLUS_3             0              18
  CLUS_4             2              12
D65V5, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             7              72
D65V6, binary
                 cls
clus                0   1
  EPHA3 MUTATED    12   0
  EPHA3 WILD-TYPE 125   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED     12    0
  EPHA3 WILD-TYPE  125    5
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            12             125
  CLUS_3             0               5
D65V7, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            11             126
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(66) Variable = ERBB4 MUTATION ANALYSIS
D66V1, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             2              56
  CLUS_3             5              24
  CLUS_4             3              21
D66V2, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             6              37
  CLUS_3             6              39
D66V3, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             3              67
  CLUS_2            11              53
  CLUS_3             0              11
  CLUS_4             0               8
D66V4, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             3              21
  CLUS_2             4              44
  CLUS_3             0              18
  CLUS_4             3              11
D66V5, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             3               5
  CLUS_3             0              10
  CLUS_4             7              72
D66V6, binary
                 cls
clus                0   1
  ERBB4 MUTATED    12   0
  ERBB4 WILD-TYPE 125   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     12    0
  ERBB4 WILD-TYPE  125    5
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            12             125
  CLUS_3             0               5
D66V7, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            11             126
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(67) Variable = GUCY1A3 MUTATION ANALYSIS
D67V1, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               3                27
  CLUS_2               1                57
  CLUS_3               3                26
  CLUS_4               2                22
D67V2, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               3                50
  CLUS_2               5                38
  CLUS_3               1                44
D67V3, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               2                68
  CLUS_2               7                57
  CLUS_3               1                10
  CLUS_4               0                 8
D67V4, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               1                23
  CLUS_2               3                45
  CLUS_3               1                17
  CLUS_4               1                13
D67V5, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               5                74
D67V6, binary
                   cls
clus                  0   1
  GUCY1A3 MUTATED     9   0
  GUCY1A3 WILD-TYPE 128   5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED      9    0
  GUCY1A3 WILD-TYPE  128    5
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               9               128
  CLUS_3               0                 5
D67V7, multiclass
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  CLUS_1               8               129
  CLUS_2               1                 2
  CLUS_3               0                 2

Clustering(68) Variable = IFT80 MUTATION ANALYSIS
D68V1, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             2              28
  CLUS_2             0              58
  CLUS_3             1              28
  CLUS_4             0              24
D68V2, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             0              53
  CLUS_2             3              40
  CLUS_3             0              45
D68V3, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             5              59
  CLUS_3             0              11
  CLUS_4             1               7
D68V4, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             2              46
  CLUS_3             1              17
  CLUS_4             1              13
D68V5, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             3              76
D68V6, binary
                 cls
clus                0   1
  IFT80 MUTATED     5   1
  IFT80 WILD-TYPE 132   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      5    1
  IFT80 WILD-TYPE  132    4
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             5             132
  CLUS_3             1               4
D68V7, multiclass
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  CLUS_1             6             131
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(69) Variable = INHBA MUTATION ANALYSIS
D69V1, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             2              28
  CLUS_2             1              57
  CLUS_3             3              26
  CLUS_4             0              24
D69V2, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             1              52
  CLUS_2             4              39
  CLUS_3             1              44
D69V3, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             1              69
  CLUS_2             5              59
  CLUS_3             0              11
  CLUS_4             0               8
D69V4, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             1              23
  CLUS_2             2              46
  CLUS_3             1              17
  CLUS_4             1              13
D69V5, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             3              76
D69V6, binary
                 cls
clus                0   1
  INHBA MUTATED     4   1
  INHBA WILD-TYPE 133   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      4    1
  INHBA WILD-TYPE  133    4
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             4             133
  CLUS_3             1               4
D69V7, multiclass
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  CLUS_1             4             133
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(70) Variable = KLK2 MUTATION ANALYSIS
D70V1, multiclass
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  CLUS_1            1             29
  CLUS_2            1             57
  CLUS_3            1             28
  CLUS_4            0             24
D70V2, multiclass
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  CLUS_1            0             53
  CLUS_2            2             41
  CLUS_3            1             44
D70V3, multiclass
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  CLUS_1            1             69
  CLUS_2            2             62
  CLUS_3            0             11
  CLUS_4            0              8
D70V4, multiclass
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            102 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3710 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00E 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
D70V5, multiclass
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            102 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678     TCGA-AA-3681 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696     TCGA-AA-3710 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812     TCGA-AA-3814 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831     TCGA-AA-3833 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3848 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3856 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00E 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
D70V6, binary
                cls
clus               0   1
  KLK2 MUTATED     2   0
  KLK2 WILD-TYPE 135   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      2    0
  KLK2 WILD-TYPE  135    5
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  CLUS_1            2            135
  CLUS_3            0              5
D70V7, multiclass
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            140 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3556 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561     TCGA-AA-3562 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667     TCGA-AA-3672 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679     TCGA-AA-3680 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685     TCGA-AA-3688 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3695     TCGA-AA-3696 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3845     TCGA-AA-3846     TCGA-AA-3848 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3949     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3984     TCGA-AA-3986 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3989     TCGA-AA-3994     TCGA-AA-A00D     TCGA-AA-A00J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A010     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01P     TCGA-AA-A01R     TCGA-AA-A01S 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A022     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 

Clustering(71) Variable = LPPR4 MUTATION ANALYSIS
D71V1, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             3              55
  CLUS_3             4              25
  CLUS_4             0              24
D71V2, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             8              35
  CLUS_3             1              44
D71V3, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             8              56
  CLUS_3             0              11
  CLUS_4             0               8
D71V4, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             2              46
  CLUS_3             1              17
  CLUS_4             3              11
D71V5, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             4              75
D71V6, binary
                 cls
clus                0   1
  LPPR4 MUTATED    10   0
  LPPR4 WILD-TYPE 127   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED     10    0
  LPPR4 WILD-TYPE  127    5
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1            10             127
  CLUS_3             0               5
D71V7, multiclass
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  CLUS_1            10             127
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(72) Variable = OR7C1 MUTATION ANALYSIS
D72V1, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             1              29
  CLUS_2             0              58
  CLUS_3             3              26
  CLUS_4             2              22
D72V2, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             0              53
  CLUS_2             4              39
  CLUS_3             2              43
D72V3, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             4              60
  CLUS_3             0              11
  CLUS_4             0               8
D72V4, multiclass
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             102 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3856      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
D72V5, multiclass
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             102 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3525      TCGA-AA-3529 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3530      TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3548      TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3814      TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3856      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
D72V6, binary
                 cls
clus                0   1
  OR7C1 MUTATED     6   0
  OR7C1 WILD-TYPE 131   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      6    0
  OR7C1 WILD-TYPE  131    5
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             6             131
  CLUS_3             0               5
D72V7, multiclass
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  CLUS_1             5             132
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(73) Variable = SCN7A MUTATION ANALYSIS
D73V1, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             7              23
  CLUS_2             1              57
  CLUS_3             4              25
  CLUS_4             0              24
D73V2, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             1              52
  CLUS_2             8              35
  CLUS_3             3              42
D73V3, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             3              67
  CLUS_2             9              55
  CLUS_3             0              11
  CLUS_4             0               8
D73V4, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             4              20
  CLUS_2             4              44
  CLUS_3             0              18
  CLUS_4             1              13
D73V5, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             1               9
  CLUS_4             7              72
D73V6, binary
                 cls
clus                0   1
  SCN7A MUTATED    11   0
  SCN7A WILD-TYPE 126   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED     11    0
  SCN7A WILD-TYPE  126    5
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1            11             126
  CLUS_3             0               5
D73V7, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  CLUS_1            10             127
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(74) Variable = TGFBR2 MUTATION ANALYSIS
D74V1, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               28
  CLUS_2              0               58
  CLUS_3              3               26
  CLUS_4              0               24
D74V2, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              3               40
  CLUS_3              0               45
D74V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              0               70
  CLUS_2              5               59
  CLUS_3              1               10
  CLUS_4              0                8
D74V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               22
  CLUS_2              2               46
  CLUS_3              1               17
  CLUS_4              2               12
D74V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              1                7
  CLUS_3              1                9
  CLUS_4              4               75
D74V6, binary
                  cls
clus                 0   1
  TGFBR2 MUTATED     5   1
  TGFBR2 WILD-TYPE 132   4
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TGFBR2 MUTATED      5    1
  TGFBR2 WILD-TYPE  132    4
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5              132
  CLUS_3              1                4
D74V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5              132
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(75) Variable = TRPS1 MUTATION ANALYSIS
D75V1, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             3              27
  CLUS_2             1              57
  CLUS_3             4              25
  CLUS_4             1              23
D75V2, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             5              38
  CLUS_3             1              44
D75V3, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             0              70
  CLUS_2            11              53
  CLUS_3             2               9
  CLUS_4             0               8
D75V4, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             5              43
  CLUS_3             1              17
  CLUS_4             1              13
D75V5, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             8              71
D75V6, binary
                 cls
clus                0   1
  TRPS1 MUTATED    11   0
  TRPS1 WILD-TYPE 126   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED     11    0
  TRPS1 WILD-TYPE  126    5
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1            11             126
  CLUS_3             0               5
D75V7, multiclass
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  CLUS_1            10             127
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(76) Variable = OR8J1 MUTATION ANALYSIS
D76V1, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             0              30
  CLUS_2             1              57
  CLUS_3             3              26
  CLUS_4             0              24
D76V2, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             1              42
  CLUS_3             0              45
D76V3, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             3              61
  CLUS_3             0              11
  CLUS_4             0               8
D76V4, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             1              47
  CLUS_3             1              17
  CLUS_4             0              14
D76V5, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             3              76
D76V6, binary
                 cls
clus                0   1
  OR8J1 MUTATED     3   0
  OR8J1 WILD-TYPE 134   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8J1 MUTATED      3    0
  OR8J1 WILD-TYPE  134    5
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             3             134
  CLUS_3             0               5
D76V7, multiclass
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  CLUS_1             2             135
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(77) Variable = RIMS2 MUTATION ANALYSIS
D77V1, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             1              57
  CLUS_3             6              23
  CLUS_4             1              23
D77V2, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             6              37
  CLUS_3             2              43
D77V3, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             2              68
  CLUS_2            10              54
  CLUS_3             0              11
  CLUS_4             0               8
D77V4, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             4              44
  CLUS_3             0              18
  CLUS_4             2              12
D77V5, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             5              74
D77V6, binary
                 cls
clus                0   1
  RIMS2 MUTATED    11   0
  RIMS2 WILD-TYPE 126   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     11    0
  RIMS2 WILD-TYPE  126    5
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            11             126
  CLUS_3             0               5
D77V7, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  CLUS_1            10             127
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(78) Variable = SFMBT2 MUTATION ANALYSIS
D78V1, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              3               27
  CLUS_2              3               55
  CLUS_3              4               25
  CLUS_4              1               23
D78V2, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              3               50
  CLUS_2              6               37
  CLUS_3              2               43
D78V3, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              8               56
  CLUS_3              0               11
  CLUS_4              1                7
D78V4, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              0               24
  CLUS_2              6               42
  CLUS_3              0               18
  CLUS_4              0               14
D78V5, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              6               73
D78V6, binary
                  cls
clus                 0   1
  SFMBT2 MUTATED    12   0
  SFMBT2 WILD-TYPE 125   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED     12    0
  SFMBT2 WILD-TYPE  125    5
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1             12              125
  CLUS_3              0                5
D78V7, multiclass
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  CLUS_1             11              126
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(79) Variable = IL18R1 MUTATION ANALYSIS
D79V1, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              3               27
  CLUS_2              1               57
  CLUS_3              2               27
  CLUS_4              1               23
D79V2, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              4               39
  CLUS_3              2               43
D79V3, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              5               59
  CLUS_3              0               11
  CLUS_4              1                7
D79V4, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              2               22
  CLUS_2              3               45
  CLUS_3              0               18
  CLUS_4              1               13
D79V5, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              5               74
D79V6, binary
                  cls
clus                 0   1
  IL18R1 MUTATED     8   0
  IL18R1 WILD-TYPE 129   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      8    0
  IL18R1 WILD-TYPE  129    5
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              8              129
  CLUS_3              0                5
D79V7, multiclass
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  CLUS_1              7              130
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(80) Variable = PCDH17 MUTATION ANALYSIS
D80V1, multiclass
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  CLUS_1              4               26
  CLUS_2              2               56
  CLUS_3              3               26
  CLUS_4              2               22
D80V2, multiclass
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              4               39
  CLUS_3              3               42
D80V3, multiclass
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  CLUS_1              5               65
  CLUS_2              8               56
  CLUS_3              1               10
  CLUS_4              0                8
D80V4, multiclass
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  CLUS_1              1               23
  CLUS_2              6               42
  CLUS_3              1               17
  CLUS_4              2               12
D80V5, multiclass
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              2                6
  CLUS_3              0               10
  CLUS_4              8               71
D80V6, binary
                  cls
clus                 0   1
  PCDH17 MUTATED    12   0
  PCDH17 WILD-TYPE 125   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH17 MUTATED     12    0
  PCDH17 WILD-TYPE  125    5
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  CLUS_1             12              125
  CLUS_3              0                5
D80V7, multiclass
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  CLUS_1             11              126
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(81) Variable = FLRT2 MUTATION ANALYSIS
D81V1, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             4              54
  CLUS_3             2              27
  CLUS_4             1              23
D81V2, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             4              39
  CLUS_3             4              41
D81V3, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             3              67
  CLUS_2             7              57
  CLUS_3             1              10
  CLUS_4             0               8
D81V4, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             3              45
  CLUS_3             2              16
  CLUS_4             2              12
D81V5, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             7              72
D81V6, binary
                 cls
clus                0   1
  FLRT2 MUTATED     9   0
  FLRT2 WILD-TYPE 128   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      9    0
  FLRT2 WILD-TYPE  128    5
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             9             128
  CLUS_3             0               5
D81V7, multiclass
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  CLUS_1             8             129
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(82) Variable = ZC3H13 MUTATION ANALYSIS
D82V1, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              4               26
  CLUS_2              2               56
  CLUS_3              9               20
  CLUS_4              1               23
D82V2, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               50
  CLUS_2             12               31
  CLUS_3              1               44
D82V3, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               67
  CLUS_2             14               50
  CLUS_3              0               11
  CLUS_4              0                8
D82V4, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               21
  CLUS_2              4               44
  CLUS_3              2               16
  CLUS_4              4               10
D82V5, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              4                4
  CLUS_3              1                9
  CLUS_4              7               72
D82V6, binary
                  cls
clus                 0   1
  ZC3H13 MUTATED    14   0
  ZC3H13 WILD-TYPE 123   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     14    0
  ZC3H13 WILD-TYPE  123    5
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             14              123
  CLUS_3              0                5
D82V7, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             13              124
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(83) Variable = PTEN MUTATION ANALYSIS
D83V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             30
  CLUS_2            0             58
  CLUS_3            3             26
  CLUS_4            1             23
D83V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            1             52
  CLUS_2            2             41
  CLUS_3            1             44
D83V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             70
  CLUS_2            3             61
  CLUS_3            1             10
  CLUS_4            0              8
D83V4, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2            102 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3856     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
D83V5, multiclass
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2            102 
    TCGA-A6-2672     TCGA-A6-2676     TCGA-A6-2677     TCGA-A6-2678 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808     TCGA-A6-3810 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3514     TCGA-AA-3517     TCGA-AA-3519     TCGA-AA-3520 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3525     TCGA-AA-3529 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3530     TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3548     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3672     TCGA-AA-3678 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3681     TCGA-AA-3688     TCGA-AA-3695     TCGA-AA-3696 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3831 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3844     TCGA-AA-3845 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3850     TCGA-AA-3852     TCGA-AA-3854 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3856     TCGA-AA-3866     TCGA-AA-3869     TCGA-AA-3872 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3947     TCGA-AA-3955     TCGA-AA-3971 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3972     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3982 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-A004     TCGA-AA-A00A 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00Q     TCGA-AA-A00R 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01I     TCGA-AA-A01K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A022 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03F     TCGA-AA-A03J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
D83V6, binary
                cls
clus               0   1
  PTEN MUTATED     4   0
  PTEN WILD-TYPE 133   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      4    0
  PTEN WILD-TYPE  133    5
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4            133
  CLUS_3            0              5
D83V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3            134
  CLUS_2            1              2
  CLUS_3            0              2

Clustering(84) Variable = ZFHX4 MUTATION ANALYSIS
D84V1, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             4              54
  CLUS_3             4              25
  CLUS_4             4              20
D84V2, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             4              49
  CLUS_2             7              36
  CLUS_3             5              40
D84V3, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             7              63
  CLUS_2            10              54
  CLUS_3             0              11
  CLUS_4             0               8
D84V4, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             6              42
  CLUS_3             0              18
  CLUS_4             1              13
D84V5, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             7              72
D84V6, binary
                 cls
clus                0   1
  ZFHX4 MUTATED    16   0
  ZFHX4 WILD-TYPE 121   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     16    0
  ZFHX4 WILD-TYPE  121    5
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            16             121
  CLUS_3             0               5
D84V7, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            14             123
  CLUS_2             2               1
  CLUS_3             0               2

Clustering(85) Variable = NRXN3 MUTATION ANALYSIS
D85V1, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             7              23
  CLUS_2             1              57
  CLUS_3             6              23
  CLUS_4             1              23
D85V2, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             3              50
  CLUS_2             9              34
  CLUS_3             3              42
D85V3, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             3              67
  CLUS_2            11              53
  CLUS_3             0              11
  CLUS_4             1               7
D85V4, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             6              42
  CLUS_3             1              17
  CLUS_4             2              12
D85V5, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2               6
  CLUS_3             0              10
  CLUS_4             7              72
D85V6, binary
                 cls
clus                0   1
  NRXN3 MUTATED    13   0
  NRXN3 WILD-TYPE 124   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     13    0
  NRXN3 WILD-TYPE  124    5
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1            13             124
  CLUS_3             0               5
D85V7, multiclass
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  CLUS_1            12             125
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(86) Variable = LIFR MUTATION ANALYSIS
D86V1, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            1             29
  CLUS_2            4             54
  CLUS_3            7             22
  CLUS_4            1             23
D86V2, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            3             50
  CLUS_2            5             38
  CLUS_3            5             40
D86V3, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            4             66
  CLUS_2            8             56
  CLUS_3            0             11
  CLUS_4            1              7
D86V4, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            1             23
  CLUS_2            4             44
  CLUS_3            0             18
  CLUS_4            1             13
D86V5, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            4             75
D86V6, binary
                cls
clus               0   1
  LIFR MUTATED    12   0
  LIFR WILD-TYPE 125   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     12    0
  LIFR WILD-TYPE  125    5
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1           12            125
  CLUS_3            0              5
D86V7, multiclass
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  CLUS_1           10            127
  CLUS_2            2              1
  CLUS_3            0              2

Clustering(87) Variable = ZNF429 MUTATION ANALYSIS
D87V1, multiclass
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  CLUS_1              0               30
  CLUS_2              1               57
  CLUS_3              3               26
  CLUS_4              2               22
D87V2, multiclass
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              2               41
  CLUS_3              3               42
D87V3, multiclass
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              4               60
  CLUS_3              0               11
  CLUS_4              0                8
D87V4, multiclass
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  CLUS_1              2               22
  CLUS_2              2               46
  CLUS_3              0               18
  CLUS_4              1               13
D87V5, multiclass
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              4               75
D87V6, binary
                  cls
clus                 0   1
  ZNF429 MUTATED     6   0
  ZNF429 WILD-TYPE 131   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      6    0
  ZNF429 WILD-TYPE  131    5
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  CLUS_1              6              131
  CLUS_3              0                5
D87V7, multiclass
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  CLUS_1              5              132
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(88) Variable = OR2M2 MUTATION ANALYSIS
D88V1, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             1              29
  CLUS_2             1              57
  CLUS_3             2              27
  CLUS_4             2              22
D88V2, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             2              41
  CLUS_3             2              43
D88V3, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             3              61
  CLUS_3             1              10
  CLUS_4             0               8
D88V4, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             2              46
  CLUS_3             0              18
  CLUS_4             1              13
D88V5, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             2              77
D88V6, binary
                 cls
clus                0   1
  OR2M2 MUTATED     5   0
  OR2M2 WILD-TYPE 132   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    0
  OR2M2 WILD-TYPE  132    5
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             5             132
  CLUS_3             0               5
D88V7, multiclass
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  CLUS_1             4             133
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(89) Variable = TMEM132D MUTATION ANALYSIS
D89V1, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1                9                 21
  CLUS_2                1                 57
  CLUS_3                2                 27
  CLUS_4                1                 23
D89V2, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1                1                 52
  CLUS_2               10                 33
  CLUS_3                2                 43
D89V3, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1                3                 67
  CLUS_2               12                 52
  CLUS_3                0                 11
  CLUS_4                0                  8
D89V4, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                3                 45
  CLUS_3                1                 17
  CLUS_4                4                 10
D89V5, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1                0                  7
  CLUS_2                2                  6
  CLUS_3                0                 10
  CLUS_4                8                 71
D89V6, binary
                    cls
clus                   0   1
  TMEM132D MUTATED    13   0
  TMEM132D WILD-TYPE 124   5
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     13    0
  TMEM132D WILD-TYPE  124    5
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1               13                124
  CLUS_3                0                  5
D89V7, multiclass
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  CLUS_1               13                124
  CLUS_2                0                  3
  CLUS_3                0                  2

Clustering(90) Variable = SAT1 MUTATION ANALYSIS
D90V1, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            4             26
  CLUS_2            0             58
  CLUS_3            0             29
  CLUS_4            0             24
D90V2, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            0             53
  CLUS_2            3             40
  CLUS_3            1             44
D90V3, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            1             69
  CLUS_2            3             61
  CLUS_3            0             11
  CLUS_4            0              8
D90V4, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            1             23
  CLUS_2            1             47
  CLUS_3            0             18
  CLUS_4            1             13
D90V5, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1              7
  CLUS_3            1              9
  CLUS_4            1             78
D90V6, binary
                cls
clus               0   1
  SAT1 MUTATED     4   0
  SAT1 WILD-TYPE 133   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE  133    5
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            4            133
  CLUS_3            0              5
D90V7, multiclass
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  CLUS_1            4            133
  CLUS_2            0              3
  CLUS_3            0              2

Clustering(91) Variable = CDH18 MUTATION ANALYSIS
D91V1, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             6              24
  CLUS_2             2              56
  CLUS_3             2              27
  CLUS_4             0              24
D91V2, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             6              37
  CLUS_3             2              43
D91V3, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             8              56
  CLUS_3             1              10
  CLUS_4             0               8
D91V4, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             3              21
  CLUS_2             3              45
  CLUS_3             0              18
  CLUS_4             3              11
D91V5, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2               6
  CLUS_3             0              10
  CLUS_4             7              72
D91V6, binary
                 cls
clus                0   1
  CDH18 MUTATED     9   0
  CDH18 WILD-TYPE 128   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      9    0
  CDH18 WILD-TYPE  128    5
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             9             128
  CLUS_3             0               5
D91V7, multiclass
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  CLUS_1             8             129
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(92) Variable = P2RY10 MUTATION ANALYSIS
D92V1, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              1               29
  CLUS_2              2               56
  CLUS_3              3               26
  CLUS_4              0               24
D92V2, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              3               40
  CLUS_3              2               43
D92V3, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              4               60
  CLUS_3              0               11
  CLUS_4              0                8
D92V4, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              0               24
  CLUS_2              2               46
  CLUS_3              1               17
  CLUS_4              1               13
D92V5, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              1                7
  CLUS_3              0               10
  CLUS_4              3               76
D92V6, binary
                  cls
clus                 0   1
  P2RY10 MUTATED     5   0
  P2RY10 WILD-TYPE 132   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      5    0
  P2RY10 WILD-TYPE  132    5
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              5              132
  CLUS_3              0                5
D92V7, multiclass
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  CLUS_1              5              132
  CLUS_2              0                3
  CLUS_3              0                2

Clustering(93) Variable = SYT16 MUTATION ANALYSIS
D93V1, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             1              57
  CLUS_3             0              29
  CLUS_4             0              24
D93V2, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             0              53
  CLUS_2             3              40
  CLUS_3             2              43
D93V3, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             0              70
  CLUS_2             4              60
  CLUS_3             0              11
  CLUS_4             1               7
D93V4, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             2              22
  CLUS_2             1              47
  CLUS_3             0              18
  CLUS_4             1              13
D93V5, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             1               9
  CLUS_4             3              76
D93V6, binary
                 cls
clus                0   1
  SYT16 MUTATED     5   1
  SYT16 WILD-TYPE 132   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT16 MUTATED      5    1
  SYT16 WILD-TYPE  132    4
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             5             132
  CLUS_3             1               4
D93V7, multiclass
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  CLUS_1             6             131
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(94) Variable = DKK4 MUTATION ANALYSIS
D94V1, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            2             28
  CLUS_2            0             58
  CLUS_3            2             27
  CLUS_4            0             24
D94V2, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            0             53
  CLUS_2            3             40
  CLUS_3            1             44
D94V3, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            0             70
  CLUS_2            4             60
  CLUS_3            0             11
  CLUS_4            0              8
D94V4, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            1             23
  CLUS_2            0             48
  CLUS_3            1             17
  CLUS_4            1             13
D94V5, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            0              7
  CLUS_2            1              7
  CLUS_3            0             10
  CLUS_4            2             77
D94V6, binary
                cls
clus               0   1
  DKK4 MUTATED     3   0
  DKK4 WILD-TYPE 134   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      3    0
  DKK4 WILD-TYPE  134    5
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            3            134
  CLUS_3            0              5
D94V7, multiclass
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  CLUS_1            3            134
  CLUS_2            0              3
  CLUS_3            0              2

Clustering(95) Variable = NALCN MUTATION ANALYSIS
D95V1, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             5              25
  CLUS_2             1              57
  CLUS_3             5              24
  CLUS_4             1              23
D95V2, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             2              51
  CLUS_2             7              36
  CLUS_3             3              42
D95V3, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             2              68
  CLUS_2            10              54
  CLUS_3             0              11
  CLUS_4             2               6
D95V4, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             3              21
  CLUS_2             6              42
  CLUS_3             0              18
  CLUS_4             1              13
D95V5, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             9              70
D95V6, binary
                 cls
clus                0   1
  NALCN MUTATED    12   0
  NALCN WILD-TYPE 125   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     12    0
  NALCN WILD-TYPE  125    5
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1            12             125
  CLUS_3             0               5
D95V7, multiclass
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  CLUS_1            11             126
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(96) Variable = SULT1C4 MUTATION ANALYSIS
D96V1, multiclass
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               0                30
  CLUS_2               0                58
  CLUS_3               3                26
  CLUS_4               0                24
D96V2, multiclass
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               0                53
  CLUS_2               3                40
  CLUS_3               0                45
D96V3, multiclass
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               0                70
  CLUS_2               2                62
  CLUS_3               0                11
  CLUS_4               1                 7
D96V4, multiclass
[1] "Remove cluster labels:" "SULT1C4 MUTATED"       
clus
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                2               102 
       TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677        TCGA-A6-2678 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808        TCGA-A6-3810 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3514        TCGA-AA-3517        TCGA-AA-3519        TCGA-AA-3520 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3525        TCGA-AA-3529 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3548        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3710 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812        TCGA-AA-3814 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869        TCGA-AA-3872 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3955        TCGA-AA-3971 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3982 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-A004        TCGA-AA-A00A 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01I        TCGA-AA-A01K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01P        TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A022 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
D96V5, multiclass
[1] "Remove cluster labels:" "SULT1C4 MUTATED"       
clus
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                2               102 
       TCGA-A6-2672        TCGA-A6-2676        TCGA-A6-2677        TCGA-A6-2678 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2683        TCGA-A6-3807        TCGA-A6-3808        TCGA-A6-3810 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3514        TCGA-AA-3517        TCGA-AA-3519        TCGA-AA-3520 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3525        TCGA-AA-3529 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3530        TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3548        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3672        TCGA-AA-3678        TCGA-AA-3681 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3695        TCGA-AA-3696        TCGA-AA-3710 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812        TCGA-AA-3814 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3831        TCGA-AA-3833 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3848 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3852        TCGA-AA-3854        TCGA-AA-3856 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3869        TCGA-AA-3872 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3947        TCGA-AA-3955        TCGA-AA-3971 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3972        TCGA-AA-3973        TCGA-AA-3975        TCGA-AA-3982 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-3989        TCGA-AA-A004        TCGA-AA-A00A 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01I        TCGA-AA-A01K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01P        TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A022 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02J        TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
D96V6, binary
                   cls
clus                  0   1
  SULT1C4 MUTATED     2   0
  SULT1C4 WILD-TYPE 135   5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1C4 MUTATED      2    0
  SULT1C4 WILD-TYPE  135    5
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  CLUS_1               2               135
  CLUS_3               0                 5
D96V7, multiclass
[1] "Remove cluster labels:" "SULT1C4 MUTATED"       
clus
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                2               140 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530        TCGA-AA-3531 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538        TCGA-AA-3542 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548        TCGA-AA-3549 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554        TCGA-AA-3556 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3558        TCGA-AA-3560        TCGA-AA-3561        TCGA-AA-3562 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667        TCGA-AA-3672 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679        TCGA-AA-3680 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685        TCGA-AA-3688 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3695        TCGA-AA-3696 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3812 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819        TCGA-AA-3821 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837        TCGA-AA-3842 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846        TCGA-AA-3848 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852        TCGA-AA-3854 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858        TCGA-AA-3860 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867        TCGA-AA-3869 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875        TCGA-AA-3877 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3949        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A00D        TCGA-AA-A00J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00U 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00W        TCGA-AA-A010        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01P        TCGA-AA-A01R        TCGA-AA-A01S 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O        TCGA-AA-A02Y 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 

Clustering(97) Variable = UMOD MUTATION ANALYSIS
D97V1, multiclass
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  CLUS_1            1             29
  CLUS_2            2             56
  CLUS_3            4             25
  CLUS_4            0             24
D97V2, multiclass
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  CLUS_1            3             50
  CLUS_2            4             39
  CLUS_3            0             45
D97V3, multiclass
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  CLUS_1            1             69
  CLUS_2            6             58
  CLUS_3            0             11
  CLUS_4            0              8
D97V4, multiclass
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  CLUS_1            1             23
  CLUS_2            2             46
  CLUS_3            2             16
  CLUS_4            2             12
D97V5, multiclass
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  CLUS_1            1              6
  CLUS_2            2              6
  CLUS_3            0             10
  CLUS_4            4             75
D97V6, binary
                cls
clus               0   1
  UMOD MUTATED     4   0
  UMOD WILD-TYPE 133   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  UMOD MUTATED      4    0
  UMOD WILD-TYPE  133    5
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  CLUS_1            4            133
  CLUS_3            0              5
D97V7, multiclass
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  CLUS_1            3            134
  CLUS_2            1              2
  CLUS_3            0              2

Clustering(98) Variable = CPXCR1 MUTATION ANALYSIS
D98V1, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               28
  CLUS_2              0               58
  CLUS_3              2               27
  CLUS_4              0               24
D98V2, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              3               40
  CLUS_3              0               45
D98V3, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              3               61
  CLUS_3              1               10
  CLUS_4              0                8
D98V4, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              0               24
  CLUS_2              4               44
  CLUS_3              1               17
  CLUS_4              0               14
D98V5, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              5               74
D98V6, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     5   1
  CPXCR1 WILD-TYPE 132   4
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      5    1
  CPXCR1 WILD-TYPE  132    4
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              5              132
  CLUS_3              1                4
D98V7, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CLUS_1              4              133
  CLUS_2              1                2
  CLUS_3              1                1

Clustering(99) Variable = PDZRN4 MUTATION ANALYSIS
D99V1, multiclass
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  CLUS_1              7               23
  CLUS_2              1               57
  CLUS_3              3               26
  CLUS_4              1               23
D99V2, multiclass
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  CLUS_1              2               51
  CLUS_2              9               34
  CLUS_3              1               44
D99V3, multiclass
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  CLUS_1              1               69
  CLUS_2             11               53
  CLUS_3              0               11
  CLUS_4              0                8
D99V4, multiclass
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  CLUS_1              0               24
  CLUS_2              3               45
  CLUS_3              0               18
  CLUS_4              3               11
D99V5, multiclass
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              2                6
  CLUS_3              0               10
  CLUS_4              4               75
D99V6, binary
                  cls
clus                 0   1
  PDZRN4 MUTATED     9   1
  PDZRN4 WILD-TYPE 128   4
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      9    1
  PDZRN4 WILD-TYPE  128    4
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  CLUS_1              9              128
  CLUS_3              1                4
D99V7, multiclass
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  CLUS_1              9              128
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(100) Variable = USP17L2 MUTATION ANALYSIS
D100V1, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               3                27
  CLUS_2               2                56
  CLUS_3               2                27
  CLUS_4               0                24
D100V2, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               2                51
  CLUS_2               4                39
  CLUS_3               1                44
D100V3, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               2                68
  CLUS_2               4                60
  CLUS_3               0                11
  CLUS_4               0                 8
D100V4, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               4                20
  CLUS_2               2                46
  CLUS_3               0                18
  CLUS_4               1                13
D100V5, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4               5                74
D100V6, binary
                   cls
clus                  0   1
  USP17L2 MUTATED     5   1
  USP17L2 WILD-TYPE 132   4
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      5    1
  USP17L2 WILD-TYPE  132    4
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               5               132
  CLUS_3               1                 4
D100V7, multiclass
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  CLUS_1               5               132
  CLUS_2               1                 2
  CLUS_3               0                 2

Clustering(101) Variable = ESR1 MUTATION ANALYSIS
D101V1, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            2             28
  CLUS_2            2             56
  CLUS_3            5             24
  CLUS_4            1             23
D101V2, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            1             52
  CLUS_2            6             37
  CLUS_3            3             42
D101V3, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            2             68
  CLUS_2            8             56
  CLUS_3            0             11
  CLUS_4            1              7
D101V4, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            2             22
  CLUS_2            2             46
  CLUS_3            1             17
  CLUS_4            2             12
D101V5, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            1              6
  CLUS_2            2              6
  CLUS_3            0             10
  CLUS_4            4             75
D101V6, binary
                cls
clus               0   1
  ESR1 MUTATED     9   0
  ESR1 WILD-TYPE 128   5
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED      9    0
  ESR1 WILD-TYPE  128    5
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            9            128
  CLUS_3            0              5
D101V7, multiclass
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  CLUS_1            8            129
  CLUS_2            1              2
  CLUS_3            0              2

Clustering(102) Variable = FAM5C MUTATION ANALYSIS
D102V1, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             2              28
  CLUS_2             1              57
  CLUS_3             4              25
  CLUS_4             2              22
D102V2, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             4              49
  CLUS_2             4              39
  CLUS_3             1              44
D102V3, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             1              69
  CLUS_2             8              56
  CLUS_3             1              10
  CLUS_4             0               8
D102V4, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             2              22
  CLUS_2             1              47
  CLUS_3             2              16
  CLUS_4             1              13
D102V5, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             1               6
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             4              75
D102V6, binary
                 cls
clus                0   1
  FAM5C MUTATED     8   1
  FAM5C WILD-TYPE 129   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      8    1
  FAM5C WILD-TYPE  129    4
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             8             129
  CLUS_3             1               4
D102V7, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  CLUS_1             8             129
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(103) Variable = MIER3 MUTATION ANALYSIS
D103V1, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             0              58
  CLUS_3             5              24
  CLUS_4             0              24
D103V2, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             7              36
  CLUS_3             1              44
D103V3, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             0              70
  CLUS_2             9              55
  CLUS_3             0              11
  CLUS_4             1               7
D103V4, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             5              43
  CLUS_3             0              18
  CLUS_4             1              13
D103V5, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             7              72
D103V6, binary
                 cls
clus                0   1
  MIER3 MUTATED    10   0
  MIER3 WILD-TYPE 127   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED     10    0
  MIER3 WILD-TYPE  127    5
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1            10             127
  CLUS_3             0               5
D103V7, multiclass
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  CLUS_1             9             128
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(104) Variable = NLRP5 MUTATION ANALYSIS
D104V1, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             3              27
  CLUS_2             0              58
  CLUS_3             3              26
  CLUS_4             2              22
D104V2, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             3              40
  CLUS_3             3              42
D104V3, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             7              57
  CLUS_3             0              11
  CLUS_4             1               7
D104V4, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             4              44
  CLUS_3             0              18
  CLUS_4             2              12
D104V5, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             2               6
  CLUS_3             0              10
  CLUS_4             5              74
D104V6, binary
                 cls
clus                0   1
  NLRP5 MUTATED     8   0
  NLRP5 WILD-TYPE 129   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED      8    0
  NLRP5 WILD-TYPE  129    5
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             8             129
  CLUS_3             0               5
D104V7, multiclass
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  CLUS_1             7             130
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(105) Variable = OR6T1 MUTATION ANALYSIS
D105V1, multiclass
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  CLUS_1             2              28
  CLUS_2             2              56
  CLUS_3             1              28
  CLUS_4             1              23
D105V2, multiclass
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             3              40
  CLUS_3             1              44
D105V3, multiclass
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             4              60
  CLUS_3             0              11
  CLUS_4             0               8
D105V4, multiclass
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             2              46
  CLUS_3             1              17
  CLUS_4             0              14
D105V5, multiclass
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             0               8
  CLUS_3             0              10
  CLUS_4             3              76
D105V6, binary
                 cls
clus                0   1
  OR6T1 MUTATED     4   1
  OR6T1 WILD-TYPE 133   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      4    1
  OR6T1 WILD-TYPE  133    4
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  CLUS_1             4             133
  CLUS_3             1               4
D105V7, multiclass
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  CLUS_1             5             132
  CLUS_2             0               3
  CLUS_3             0               2

Clustering(106) Variable = PCDH10 MUTATION ANALYSIS
D106V1, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              6               24
  CLUS_2              3               55
  CLUS_3              3               26
  CLUS_4              1               23
D106V2, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              7               36
  CLUS_3              2               43
D106V3, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              4               66
  CLUS_2              9               55
  CLUS_3              0               11
  CLUS_4              1                7
D106V4, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              2               22
  CLUS_2              5               43
  CLUS_3              1               17
  CLUS_4              3               11
D106V5, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                8
  CLUS_3              2                8
  CLUS_4              9               70
D106V6, binary
                  cls
clus                 0   1
  PCDH10 MUTATED    12   0
  PCDH10 WILD-TYPE 125   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     12    0
  PCDH10 WILD-TYPE  125    5
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1             12              125
  CLUS_3              0                5
D106V7, multiclass
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  CLUS_1             11              126
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(107) Variable = PCDHB5 MUTATION ANALYSIS
D107V1, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              5               25
  CLUS_2              2               56
  CLUS_3              4               25
  CLUS_4              1               23
D107V2, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              4               49
  CLUS_2              6               37
  CLUS_3              2               43
D107V3, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              3               67
  CLUS_2              9               55
  CLUS_3              0               11
  CLUS_4              0                8
D107V4, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              3               21
  CLUS_2              2               46
  CLUS_3              2               16
  CLUS_4              3               11
D107V5, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              2                5
  CLUS_2              3                5
  CLUS_3              0               10
  CLUS_4              5               74
D107V6, binary
                  cls
clus                 0   1
  PCDHB5 MUTATED    10   0
  PCDHB5 WILD-TYPE 127   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED     10    0
  PCDHB5 WILD-TYPE  127    5
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1             10              127
  CLUS_3              0                5
D107V7, multiclass
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  CLUS_1              9              128
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(108) Variable = TRPC6 MUTATION ANALYSIS
D108V1, multiclass
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  CLUS_1             4              26
  CLUS_2             1              57
  CLUS_3             1              28
  CLUS_4             1              23
D108V2, multiclass
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             3              40
  CLUS_3             2              43
D108V3, multiclass
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  CLUS_1             2              68
  CLUS_2             6              58
  CLUS_3             0              11
  CLUS_4             0               8
D108V4, multiclass
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  CLUS_1             0              24
  CLUS_2             3              45
  CLUS_3             1              17
  CLUS_4             1              13
D108V5, multiclass
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             4              75
D108V6, binary
                 cls
clus                0   1
  TRPC6 MUTATED     6   0
  TRPC6 WILD-TYPE 131   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC6 MUTATED      6    0
  TRPC6 WILD-TYPE  131    5
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  CLUS_1             6             131
  CLUS_3             0               5
D108V7, multiclass
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  CLUS_1             5             132
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(109) Variable = RHOA MUTATION ANALYSIS
D109V1, multiclass
[1] "Remove cluster labels:" "RHOA MUTATED"          
clus
  RHOA MUTATED RHOA WILD-TYPE 
             2            139 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3864 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AY-4070     TCGA-AY-4071 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
D109V2, multiclass
[1] "Remove cluster labels:" "RHOA MUTATED"          
clus
  RHOA MUTATED RHOA WILD-TYPE 
             2            139 
    TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676     TCGA-A6-2677 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516     TCGA-AA-3517 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520     TCGA-AA-3521 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530     TCGA-AA-3531 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538     TCGA-AA-3542 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548     TCGA-AA-3549 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554     TCGA-AA-3555 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3556     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3696 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3812 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819     TCGA-AA-3821 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837     TCGA-AA-3842 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3850 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854     TCGA-AA-3855 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860     TCGA-AA-3864 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869     TCGA-AA-3870 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877     TCGA-AA-3930 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956     TCGA-AA-3966 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3971     TCGA-AA-3973     TCGA-AA-3975     TCGA-AA-3976 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3977     TCGA-AA-3979     TCGA-AA-3980     TCGA-AA-3982 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3984     TCGA-AA-3986     TCGA-AA-3989     TCGA-AA-3994 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AY-4070     TCGA-AY-4071 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
D109V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             69
  CLUS_2            3             61
  CLUS_3            0             11
  CLUS_4            0              8
D109V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             23
  CLUS_2            2             46
  CLUS_3            1             17
  CLUS_4            0             14
D109V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            0              7
  CLUS_2            0              8
  CLUS_3            0             10
  CLUS_4            4             75
D109V6, binary
                cls
clus               0   1
  RHOA MUTATED     3   1
  RHOA WILD-TYPE 134   4
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      3    1
  RHOA WILD-TYPE  134    4
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3            134
  CLUS_3            1              4
D109V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            133
  CLUS_2            0              3
  CLUS_3            0              2

Clustering(110) Variable = SYNE1 MUTATION ANALYSIS
D110V1, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            13              17
  CLUS_2             7              51
  CLUS_3            14              15
  CLUS_4             3              21
D110V2, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1             9              44
  CLUS_2            21              22
  CLUS_3             7              38
D110V3, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1             9              61
  CLUS_2            26              38
  CLUS_3             0              11
  CLUS_4             1               7
D110V4, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1             7              17
  CLUS_2            11              37
  CLUS_3             4              14
  CLUS_4             5               9
D110V5, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1             2               5
  CLUS_2             3               5
  CLUS_3             3               7
  CLUS_4            19              60
D110V6, binary
                 cls
clus                0   1
  SYNE1 MUTATED    32   1
  SYNE1 WILD-TYPE 105   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     32    1
  SYNE1 WILD-TYPE  105    4
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            32             105
  CLUS_3             1               4
D110V7, multiclass
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  CLUS_1            31             106
  CLUS_2             2               1
  CLUS_3             0               2

Clustering(111) Variable = CYTL1 MUTATION ANALYSIS
D111V1, multiclass
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  CLUS_1             0              30
  CLUS_2             1              57
  CLUS_3             2              27
  CLUS_4             0              24
D111V2, multiclass
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  CLUS_1             2              51
  CLUS_2             0              43
  CLUS_3             1              44
D111V3, multiclass
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             3              61
  CLUS_3             0              11
  CLUS_4             0               8
D111V4, multiclass
[1] "Remove cluster labels:" "CYTL1 MUTATED"         
clus
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2             102 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3710 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
D111V5, multiclass
[1] "Remove cluster labels:" "CYTL1 MUTATED"         
clus
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2             102 
     TCGA-A6-2672      TCGA-A6-2676      TCGA-A6-2677      TCGA-A6-2678 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808      TCGA-A6-3810 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3514      TCGA-AA-3517      TCGA-AA-3519      TCGA-AA-3520 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3525      TCGA-AA-3529      TCGA-AA-3530 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3531      TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3548 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3672      TCGA-AA-3678      TCGA-AA-3681 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3688      TCGA-AA-3695      TCGA-AA-3696      TCGA-AA-3710 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3831      TCGA-AA-3833 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3844      TCGA-AA-3845      TCGA-AA-3848 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3850      TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3856 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3864      TCGA-AA-3866      TCGA-AA-3869      TCGA-AA-3872 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3930      TCGA-AA-3947      TCGA-AA-3955      TCGA-AA-3971 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3982 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-A004      TCGA-AA-A00A 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00Q      TCGA-AA-A00R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01I      TCGA-AA-A01K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A022 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03F      TCGA-AA-A03J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
D111V6, binary
                 cls
clus                0   1
  CYTL1 MUTATED     4   0
  CYTL1 WILD-TYPE 133   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      4    0
  CYTL1 WILD-TYPE  133    5
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  CLUS_1             4             133
  CLUS_3             0               5
D111V7, multiclass
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  CLUS_1             3             134
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(112) Variable = CHRM2 MUTATION ANALYSIS
D112V1, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             2              28
  CLUS_2             1              57
  CLUS_3             2              27
  CLUS_4             1              23
D112V2, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             1              52
  CLUS_2             4              39
  CLUS_3             1              44
D112V3, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             1              69
  CLUS_2             6              58
  CLUS_3             1              10
  CLUS_4             0               8
D112V4, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             1              23
  CLUS_2             4              44
  CLUS_3             0              18
  CLUS_4             2              12
D112V5, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
  CLUS_3             0              10
  CLUS_4             6              73
D112V6, binary
                 cls
clus                0   1
  CHRM2 MUTATED     6   1
  CHRM2 WILD-TYPE 131   4
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      6    1
  CHRM2 WILD-TYPE  131    4
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             6             131
  CLUS_3             1               4
D112V7, multiclass
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  CLUS_1             6             131
  CLUS_2             1               2
  CLUS_3             0               2

Clustering(113) Variable = GALNT14 MUTATION ANALYSIS
D113V1, multiclass
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  CLUS_1               3                27
  CLUS_2               1                57
  CLUS_3               3                26
  CLUS_4               1                23
D113V2, multiclass
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  CLUS_1               2                51
  CLUS_2               4                39
  CLUS_3               2                43
D113V3, multiclass
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  CLUS_1               1                69
  CLUS_2               7                57
  CLUS_3               1                10
  CLUS_4               0                 8
D113V4, multiclass
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  CLUS_1               1                23
  CLUS_2               4                44
  CLUS_3               2                16
  CLUS_4               2                12
D113V5, multiclass
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               2                 6
  CLUS_3               0                10
  CLUS_4               5                74
D113V6, binary
                   cls
clus                  0   1
  GALNT14 MUTATED     7   0
  GALNT14 WILD-TYPE 130   5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      7    0
  GALNT14 WILD-TYPE  130    5
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  CLUS_1               7               130
  CLUS_3               0                 5
D113V7, multiclass
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  CLUS_1               6               131
  CLUS_2               1                 2
  CLUS_3               0                 2

Clustering(114) Variable = LRRIQ3 MUTATION ANALYSIS
D114V1, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              3               27
  CLUS_2              2               56
  CLUS_3              1               28
  CLUS_4              1               23
D114V2, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              1               52
  CLUS_2              3               40
  CLUS_3              3               42
D114V3, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              2               68
  CLUS_2              4               60
  CLUS_3              1               10
  CLUS_4              0                8
D114V4, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              0               24
  CLUS_2              2               46
  CLUS_3              1               17
  CLUS_4              1               13
D114V5, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              1                6
  CLUS_2              0                8
  CLUS_3              0               10
  CLUS_4              3               76
D114V6, binary
                  cls
clus                 0   1
  LRRIQ3 MUTATED     7   0
  LRRIQ3 WILD-TYPE 130   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      7    0
  LRRIQ3 WILD-TYPE  130    5
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              7              130
  CLUS_3              0                5
D114V7, multiclass
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  CLUS_1              6              131
  CLUS_2              1                2
  CLUS_3              0                2

Clustering(115) Variable = NAALAD2 MUTATION ANALYSIS
D115V1, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               4                26
  CLUS_2               2                56
  CLUS_3               5                24
  CLUS_4               0                24
D115V2, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               1                52
  CLUS_2               7                36
  CLUS_3               3                42
D115V3, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               1                69
  CLUS_2              10                54
  CLUS_3               0                11
  CLUS_4               0                 8
D115V4, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               1                23
  CLUS_2               3                45
  CLUS_3               0                18
  CLUS_4               3                11
D115V5, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               3                 5
  CLUS_3               1                 9
  CLUS_4               3                76
D115V6, binary
                   cls
clus                  0   1
  NAALAD2 MUTATED     9   0
  NAALAD2 WILD-TYPE 128   5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      9    0
  NAALAD2 WILD-TYPE  128    5
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               9               128
  CLUS_3               0                 5
D115V7, multiclass
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  CLUS_1               8               129
  CLUS_2               1                 2
  CLUS_3               0                 2

Clustering(116) Variable = PCDH11X MUTATION ANALYSIS
D116V1, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               4                26
  CLUS_2               1                57
  CLUS_3               3                26
  CLUS_4               2                22
D116V2, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               2                51
  CLUS_2               4                39
  CLUS_3               4                41
D116V3, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               2                68
  CLUS_2               8                56
  CLUS_3               1                10
  CLUS_4               0                 8
D116V4, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               2                22
  CLUS_2               1                47
  CLUS_3               0                18
  CLUS_4               2                12
D116V5, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               3                76
D116V6, binary
                   cls
clus                  0   1
  PCDH11X MUTATED    10   0
  PCDH11X WILD-TYPE 127   5
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED     10    0
  PCDH11X WILD-TYPE  127    5
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1              10               127
  CLUS_3               0                 5
D116V7, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  CLUS_1               9               128
  CLUS_2               1                 2
  CLUS_3               0                 2

Clustering(117) Variable = TFAP2D MUTATION ANALYSIS
D117V1, multiclass
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  CLUS_1              1               29
  CLUS_2              1               57
  CLUS_3              2               27
  CLUS_4              1               23
D117V2, multiclass
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  CLUS_1              2               51
  CLUS_2              2               41
  CLUS_3              1               44
D117V3, multiclass
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  CLUS_1              1               69
  CLUS_2              4               60
  CLUS_3              0               11
  CLUS_4              0                8
D117V4, multiclass
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  CLUS_1              1               23
  CLUS_2              2               46
  CLUS_3              0               18
  CLUS_4              1               13
D117V5, multiclass
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  CLUS_1              0                7
  CLUS_2              0                8
  CLUS_3              1                9
  CLUS_4              3               76
D117V6, binary
                  cls
clus                 0   1
  TFAP2D MUTATED     5   0
  TFAP2D WILD-TYPE 132   5
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TFAP2D MUTATED      5    0
  TFAP2D WILD-TYPE  132    5
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  CLUS_1              5              132
  CLUS_3              0                5
D117V7, multiclass
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  CLUS_1              5              132
  CLUS_2              0                3
  CLUS_3              0                2

Clustering(118) Variable = TNR MUTATION ANALYSIS
D118V1, multiclass
        clus
vv       TNR MUTATED TNR WILD-TYPE
  CLUS_1           4            26
  CLUS_2           2            56
  CLUS_3           7            22
  CLUS_4           1            23
D118V2, multiclass
        clus
vv       TNR MUTATED TNR WILD-TYPE
  CLUS_1           3            50
  CLUS_2           9            34
  CLUS_3           2            43
D118V3, multiclass
        clus
vv       TNR MUTATED TNR WILD-TYPE
  CLUS_1           1            69
  CLUS_2          13            51
  CLUS_3           0            11
  CLUS_4           1             7
D118V4, multiclass
        clus
vv       TNR MUTATED TNR WILD-TYPE
  CLUS_1           2            22
  CLUS_2           4            44
  CLUS_3           0            18
  CLUS_4           3            11
D118V5, multiclass
        clus
vv       TNR MUTATED TNR WILD-TYPE
  CLUS_1           0             7
  CLUS_2           2             6
  CLUS_3           0            10
  CLUS_4           7            72
D118V6, binary
               cls
clus              0   1
  TNR MUTATED    12   0
  TNR WILD-TYPE 125   5
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED     12    0
  TNR WILD-TYPE  125    5
        clus
vv       TNR MUTATED TNR WILD-TYPE
  CLUS_1          12           125
  CLUS_3           0             5
D118V7, multiclass
        clus
vv       TNR MUTATED TNR WILD-TYPE
  CLUS_1          12           125
  CLUS_2           0             3
  CLUS_3           0             2

Clustering(119) Variable = CNTNAP4 MUTATION ANALYSIS
D119V1, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               1                29
  CLUS_2               1                57
  CLUS_3               6                23
  CLUS_4               1                23
D119V2, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               3                50
  CLUS_2               4                39
  CLUS_3               2                43
D119V3, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               1                69
  CLUS_2               9                55
  CLUS_3               0                11
  CLUS_4               0                 8
D119V4, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               0                24
  CLUS_2               5                43
  CLUS_3               1                17
  CLUS_4               1                13
D119V5, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               6                73
D119V6, binary
                   cls
clus                  0   1
  CNTNAP4 MUTATED     8   1
  CNTNAP4 WILD-TYPE 129   4
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      8    1
  CNTNAP4 WILD-TYPE  129    4
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               8               129
  CLUS_3               1                 4
D119V7, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CLUS_1               7               130
  CLUS_2               1                 2
  CLUS_3               1                 1

Clustering(120) Variable = DOCK2 MUTATION ANALYSIS
D120V1, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             6              24
  CLUS_2             1              57
  CLUS_3             6              23
  CLUS_4             1              23
D120V2, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             2              51
  CLUS_2            10              33
  CLUS_3             2              43
D120V3, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             2              68
  CLUS_2            13              51
  CLUS_3             1              10
  CLUS_4             0               8
D120V4, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             3              21
  CLUS_2             6              42
  CLUS_3             1              17
  CLUS_4             2              12
D120V5, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1             1               6
  CLUS_2             2               6
  CLUS_3             1               9
  CLUS_4             8              71
D120V6, binary
                 cls
clus                0   1
  DOCK2 MUTATED    15   0
  DOCK2 WILD-TYPE 122   5
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     15    0
  DOCK2 WILD-TYPE  122    5
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1            15             122
  CLUS_3             0               5
D120V7, multiclass
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  CLUS_1            14             123
  CLUS_2             1               2
  CLUS_3             0               2
                    V1                     V2                     V3 
           "MRNA_CNMF"   "MRNA_CHIERARCHICAL"              "CN_CNMF" 
                    V4                     V5                     V6 
           "RPPA_CNMF"   "RPPA_CHIERARCHICAL"          "MIRSEQ_CNMF" 
                    V7 
"MIRSEQ_CHIERARCHICAL" 
> q(save="no")
