
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.84.4098/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.84.4098/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/HNSC-TP/3144284/1.GDAC_mergedClustering.Finished/HNSC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/HNSC-TP/3132649/1.GDAC_clinicalDataPicker.Finished/HNSC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=327, in cluster file=358, common to both=327
[1]   8 327
[1] "CN_CNMF"
[1] 3
 1  2  3  4  5  6 
74 39 46 81 71 10 
 1  2  3  4  5  6 
74 39 46 81 71 10 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4  5  6  7  8 
43 47 40 44 58 53  5 19 
 1  2  3  4  5  6  7  8 
43 47 40 44 58 53  5 19 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
73 52 29 58 
 1  2  3  4 
73 52 29 58 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
116  78  18 
  1   2   3 
116  78  18 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
118  93  91 
  1   2   3 
118  93  91 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 97  85 120 
  1   2   3 
 97  85 120 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
 98 128  99 
  1   2   3 
 98 128  99 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
123  11 191 
  1   2   3 
123  11 191 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NUMBERPACKYEARSSMOKED"                 
[17] "TOBACCOSMOKINGHISTORYINDICATOR"        
[18] "YEAROFTOBACCOSMOKINGONSET"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 327 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415         1134          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         190          845         1761          186          179          242 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          152          244           NA           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
          NA          113          236          186         2891          275 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
         140          133          557          310          535          422 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
         718          638         1152          427          436         2161 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
         624          192          412          310          142          194 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4734 
         325          166          343          383          522          226 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
         369          395          240          436          348          810 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
         875          397          279          289          173          377 
TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
         866          193          252          493          351          360 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
         352          380           NA          413          274          207 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
         228          143          154          201          159           45 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
         134           97          276          201          188          224 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
          42          177           83          119           NA          114 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
         100           46         1465         1207          654           NA 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        1183          841          896         1028          317          341 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6222 
         128          870           NA           NA         1000         1160 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
        1057          984           NA           NA           NA          814 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
        1461         1377         1006          508          693          900 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
        2562          358         1662         1152          798         1777 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
        1521           NA         1050         1125           NA          514 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
          NA          362          311          345          354          233 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
         379          350          479           NA         1435         1190 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
        1440         1244           NA          104           NA          759 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
         889           30          972           NA         1036           NA 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
         796           NA          997         1430           NA          392 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
         907          913          946          908          898          929 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
         216          156          180         1077          910         1471 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
        4115          522         3930         3295         1438          584 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
         546         2732         2663         2326         2567         1969 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
         519          406          540         1736         1478         1007 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
         215         1315         1246          405          743          179 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
          NA           NA           NA         3835           NA           NA 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
          NA         3836         3380           NA           NA           NA 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
          NA           NA         3496         1724           NA         1444 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        1095          953          797           NA           NA           NA 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
          NA           NA           NA           NA         1099           NA 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
          NA           NA           NA           NA         4334           NA 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-7446 TCGA-CV-7568 TCGA-CX-7082 TCGA-CX-7085 
          NA           NA           NA           NA          316          321 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
         236          828          403          325          250          238 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-D6-8568 TCGA-D6-8569 
          77          152          153          127          105          127 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        1149         1058          516          477          548           NA 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
         575          661          360          299          369          368 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 
         324           35           14           13           30           57 
TCGA-H7-8502 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 TCGA-HD-7832 
          NA            2            5           25           NA           NA 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 
          31           55           44           30           30          692 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
         160          122          113 
Variable 1:'AGE':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=119,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=215,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=96,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBERPACKYEARSSMOKED':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=54,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "PATHOLOGY.T"                           
 [4] "PATHOLOGY.N"                           
 [5] "PATHOLOGICSPREAD(M)"                   
 [6] "TUMOR.STAGE"                           
 [7] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [8] "NUMBERPACKYEARSSMOKED"                 
 [9] "TOBACCOSMOKINGHISTORYINDICATOR"        
[10] "YEAROFTOBACCOSMOKINGONSET"             
[11] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE" "6"           
[1] "stage2"
vv
  1   2   3   4 
 20  52  45 162 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 327 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=57, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 28  84  66 106 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 28  84  66 106 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 28  84  66 106 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 28  84  66 106 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
108  36 103   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
108  36 103   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
108  36 103   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
108  36 103   5 
PATHOLOGICSPREAD(M), nv=2, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 20  52  45 162 
[1] "table(vv)"
vv
  I  II III  IV 
 20  52  45 162 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 20  52  45 162 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 20  52  45 162 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=72, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=54, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=26, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 38 35
  subtype2 26 12
  subtype3 24 22
  subtype4 63 18
  subtype5 41 28
  subtype6  4  6
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      73       38       46       81       69       10 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      35       12       22       18       28        6 
$subtype1
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6870 
       15.16        13.64        37.28         8.15         5.00        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7871 
        2.07        12.99         7.76         4.37        37.87        14.04 
TCGA-BB-8596 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4735 TCGA-CN-5363 TCGA-CN-5364 
       71.05         6.38        10.68        12.13         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6020 
       11.54        11.84        11.57         7.50         5.06         3.19 
TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6221 TCGA-CQ-6228 
        5.82         3.68         3.29        48.16        32.88        14.96 
TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6491 TCGA-CR-7369 
       16.70        11.77        16.90         6.02        11.51        35.84 
TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7388 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5431 
       19.92        17.13        27.02         5.92       135.29        17.16 
TCGA-CV-5441 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6940 
       87.55        33.11        43.23         9.70         5.46        26.43 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6956 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 
       12.03        15.06         7.13        18.81        12.66         1.84 
TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7247 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7423 
       71.21        56.68        18.97         0.46        22.85       100.54 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CX-7082 TCGA-D6-6825 TCGA-D6-6826 
       84.49        19.73       142.49        10.39         5.00         5.03 
TCGA-DQ-5625 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7753 
       34.78        14.04        18.90         1.15         0.46         0.16 
TCGA-HL-7533 
       22.75 

$subtype2
TCGA-BA-4075 TCGA-BB-4224 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 
        9.30         9.04         5.46        11.28        12.59         7.89 
TCGA-CN-6988 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6224 TCGA-CR-5243 TCGA-CR-6474 
        1.38        27.65        29.46        32.35        84.23        18.51 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7379 TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5973 
        9.27        39.12        34.06        12.89         5.13        57.07 
TCGA-CV-6937 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6959 TCGA-CV-7091 TCGA-CV-7104 
       20.52        42.35        65.82         8.38       111.12        12.89 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7437 
       36.00        31.33        26.20        25.02         0.07        16.60 
TCGA-CX-7086 TCGA-D6-6823 TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5631 TCGA-DQ-7592 
        7.76         7.82         3.45        37.78        18.02         9.83 
TCGA-HD-8224 TCGA-HD-8635 
        1.81         0.99 

$subtype3
TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6869 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-8601 
        9.07         6.12         8.02        17.59        23.61        20.52 
TCGA-CN-4725 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6021 
       10.19         9.50        28.47         6.81         4.70         9.07 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6992 TCGA-CQ-5332 TCGA-CQ-6225 TCGA-CR-7364 
        6.18         7.36         2.73        10.42        13.25        47.18 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7390 TCGA-CR-7402 TCGA-CV-5432 
        3.42         3.06         0.99        29.82        29.92       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6933 
      108.33        47.28        89.82         7.07         5.88        90.08 
TCGA-CV-6941 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 
       11.24        30.05         4.14         5.23        52.31        21.76 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7418 TCGA-CV-7422 
       36.13        18.41        58.06        35.54        25.94        34.09 
TCGA-CV-7424 TCGA-DQ-5629 TCGA-HD-7917 TCGA-HD-8314 
       14.86        16.96         1.02         1.45 

$subtype4
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5559 TCGA-BB-4217 
        6.25        27.78        57.90         5.88        57.44         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 
       95.05         4.60        18.31        10.19        13.87        20.98 
TCGA-CN-4722 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5358 
        6.31        17.16        12.99        11.44        28.77         5.69 
TCGA-CN-5359 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6017 TCGA-CN-6019 TCGA-CQ-5324 
       12.39        12.49         9.01         5.23         4.41        39.68 
TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-6229 TCGA-CQ-7068 
       21.50        38.89        33.80        11.21        26.76        22.78 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6492 
       34.52        36.99        10.22        11.34         7.66        15.75 
TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       31.96        26.17        32.78        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7404 TCGA-CV-5442 TCGA-CV-5443 
       29.52        30.54         7.10        48.36        76.47        84.39 
TCGA-CV-5971 TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 TCGA-CV-6953 
       17.75        24.43         4.70        21.86        19.79        53.92 
TCGA-CV-6955 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7250 TCGA-CV-7410 TCGA-CV-7411 
       10.98       114.94        47.47        95.34       210.94        89.33 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6827 
       56.48       156.49        10.55        13.25         2.53         4.18 
TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-H7-7774 
       15.68        21.73        11.84        12.13        12.10         0.99 
TCGA-HD-7754 TCGA-HD-8634 TCGA-IQ-7632 
        0.82         0.99         3.72 

$subtype5
TCGA-BA-5557 TCGA-BA-5558 TCGA-BB-7872 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4738 
        7.96        53.75        14.33        13.55         4.67        14.33 
TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6016 
       26.63        13.05         9.17         8.52        13.58         6.61 
TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6996 TCGA-CQ-5326 TCGA-CQ-5334 TCGA-CQ-6218 
        1.48         6.61         3.75         2.93         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 
       32.35        34.75         4.21        48.03        45.27        33.07 
TCGA-CQ-7069 TCGA-CR-6480 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-7367 TCGA-CR-7368 
       29.59        11.90        11.64        12.46        47.34        40.90 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7386 TCGA-CR-7401 TCGA-CV-5436 TCGA-CV-5439 
       24.95        29.23        47.01        35.41        19.20        17.95 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5976 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6942 
       64.73        17.06        48.59        40.96         2.14       126.08 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 
       28.31         2.50        64.80       126.12         7.99         9.01 
TCGA-CV-7180 TCGA-CV-7236 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       10.75         4.73        17.10         4.96        11.87         2.10 
TCGA-CV-7413 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7219 
        9.67         3.48        16.27         6.38        21.99        27.22 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-8569 TCGA-DQ-7595 TCGA-F7-8489 TCGA-H7-8501 
       10.68         8.22         4.18        10.65         0.43         1.87 
TCGA-HD-7229 TCGA-IQ-7630 TCGA-IQ-7631 
        0.07         5.26         4.01 

$subtype6
TCGA-BA-6873 TCGA-CN-6994 TCGA-CN-6998 TCGA-CV-5970 TCGA-CV-6433 TCGA-CV-6952 
        3.72         3.91         1.51        13.35        13.32         6.08 
TCGA-CV-7254 TCGA-CV-7409 TCGA-CV-7428 TCGA-CV-7434 
       47.97        17.82        54.90         7.13 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.16     0.07     0.99     0.82     0.07     1.51 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  142.49   111.12   129.21   210.94   126.12    54.90 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  13.640   14.745   14.055   21.500   12.460   10.225 
[1] "0.2 - 142.5 (13.6)" "0.1 - 111.1 (14.7)" "1.0 - 129.2 (14.1)"
[4] "0.8 - 210.9 (21.5)" "0.1 - 126.1 (12.5)" "1.5 - 54.9 (10.2)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype5"
 [13] "subtype5" "subtype4" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype1" "subtype6" "subtype1" "subtype4" "subtype4" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
 [31] "subtype3" "subtype4" "subtype1" "subtype1" "subtype5" "subtype1"
 [37] "subtype3" "subtype4" "subtype5" "subtype3" "subtype5" "subtype1"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
 [49] "subtype4" "subtype2" "subtype5" "subtype4" "subtype5" "subtype4"
 [55] "subtype5" "subtype5" "subtype3" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [67] "subtype5" "subtype5" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype5" "subtype4" "subtype5" "subtype4" "subtype1"
 [79] "subtype3" "subtype5" "subtype3" "subtype3" "subtype2" "subtype1"
 [85] "subtype3" "subtype6" "subtype1" "subtype5" "subtype1" "subtype6"
 [91] "subtype1" "subtype4" "subtype4" "subtype5" "subtype4" "subtype2"
 [97] "subtype2" "subtype4" "subtype3" "subtype4" "subtype5" "subtype5"
[103] "subtype5" "subtype1" "subtype5" "subtype2" "subtype3" "subtype5"
[109] "subtype1" "subtype4" "subtype5" "subtype5" "subtype5" "subtype1"
[115] "subtype4" "subtype5" "subtype2" "subtype1" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[127] "subtype2" "subtype1" "subtype1" "subtype5" "subtype4" "subtype4"
[133] "subtype5" "subtype4" "subtype5" "subtype1" "subtype4" "subtype2"
[139] "subtype3" "subtype2" "subtype5" "subtype5" "subtype1" "subtype3"
[145] "subtype3" "subtype5" "subtype5" "subtype3" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype1" "subtype4" "subtype5" "subtype1"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype2" "subtype1" "subtype5" "subtype3"
[169] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype5" "subtype5" "subtype3" "subtype1" "subtype4" "subtype4"
[181] "subtype5" "subtype5" "subtype6" "subtype4" "subtype2" "subtype5"
[187] "subtype1" "subtype3" "subtype1" "subtype5" "subtype6" "subtype4"
[193] "subtype3" "subtype3" "subtype5" "subtype1" "subtype1" "subtype2"
[199] "subtype4" "subtype4" "subtype1" "subtype3" "subtype5" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype6" "subtype4"
[211] "subtype2" "subtype4" "subtype1" "subtype2" "subtype5" "subtype5"
[217] "subtype3" "subtype5" "subtype5" "subtype2" "subtype1" "subtype1"
[223] "subtype5" "subtype5" "subtype3" "subtype1" "subtype3" "subtype2"
[229] "subtype3" "subtype1" "subtype5" "subtype4" "subtype1" "subtype5"
[235] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype5"
[241] "subtype4" "subtype5" "subtype5" "subtype6" "subtype5" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype6" "subtype4" "subtype4"
[253] "subtype5" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype3" "subtype4" "subtype4" "subtype6"
[265] "subtype5" "subtype5" "subtype1" "subtype1" "subtype6" "subtype1"
[271] "subtype2" "subtype5" "subtype5" "subtype1" "subtype4" "subtype2"
[277] "subtype5" "subtype4" "subtype5" "subtype5" "subtype2" "subtype4"
[283] "subtype1" "subtype1" "subtype4" "subtype2" "subtype5" "subtype2"
[289] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[295] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype5"
[301] "subtype1" "subtype1" "subtype5" "subtype4" "subtype5" "subtype5"
[307] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype4"
[313] "subtype2" "subtype1" "subtype5" "subtype5" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype5"
 [13] "subtype5" "subtype4" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype1" "subtype6" "subtype1" "subtype4" "subtype4" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
 [31] "subtype3" "subtype4" "subtype1" "subtype1" "subtype5" "subtype1"
 [37] "subtype3" "subtype4" "subtype5" "subtype3" "subtype5" "subtype1"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
 [49] "subtype4" "subtype2" "subtype5" "subtype4" "subtype5" "subtype4"
 [55] "subtype5" "subtype5" "subtype3" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [67] "subtype5" "subtype5" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype5" "subtype4" "subtype5" "subtype4" "subtype1"
 [79] "subtype3" "subtype5" "subtype3" "subtype3" "subtype2" "subtype1"
 [85] "subtype3" "subtype6" "subtype1" "subtype5" "subtype1" "subtype6"
 [91] "subtype1" "subtype4" "subtype4" "subtype5" "subtype4" "subtype2"
 [97] "subtype2" "subtype4" "subtype3" "subtype4" "subtype5" "subtype5"
[103] "subtype5" "subtype1" "subtype5" "subtype2" "subtype3" "subtype5"
[109] "subtype1" "subtype4" "subtype5" "subtype5" "subtype5" "subtype1"
[115] "subtype4" "subtype5" "subtype2" "subtype1" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[127] "subtype2" "subtype1" "subtype1" "subtype5" "subtype4" "subtype4"
[133] "subtype5" "subtype4" "subtype5" "subtype1" "subtype4" "subtype2"
[139] "subtype3" "subtype2" "subtype5" "subtype5" "subtype1" "subtype3"
[145] "subtype3" "subtype5" "subtype5" "subtype3" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype1" "subtype4" "subtype5" "subtype1"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype2" "subtype1" "subtype5" "subtype3"
[169] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype5" "subtype5" "subtype3" "subtype1" "subtype4" "subtype4"
[181] "subtype5" "subtype5" "subtype6" "subtype4" "subtype2" "subtype5"
[187] "subtype1" "subtype3" "subtype1" "subtype5" "subtype6" "subtype4"
[193] "subtype3" "subtype3" "subtype5" "subtype1" "subtype1" "subtype2"
[199] "subtype4" "subtype4" "subtype1" "subtype3" "subtype5" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype6" "subtype4"
[211] "subtype2" "subtype4" "subtype1" "subtype2" "subtype5" "subtype5"
[217] "subtype3" "subtype5" "subtype5" "subtype2" "subtype1" "subtype1"
[223] "subtype5" "subtype5" "subtype3" "subtype1" "subtype3" "subtype2"
[229] "subtype3" "subtype1" "subtype5" "subtype4" "subtype1" "subtype5"
[235] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype5"
[241] "subtype4" "subtype5" "subtype5" "subtype6" "subtype5" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype6" "subtype4" "subtype4"
[253] "subtype5" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype3" "subtype4" "subtype4" "subtype6"
[265] "subtype5" "subtype5" "subtype1" "subtype1" "subtype6" "subtype1"
[271] "subtype2" "subtype5" "subtype5" "subtype1" "subtype4" "subtype2"
[277] "subtype5" "subtype4" "subtype5" "subtype5" "subtype2" "subtype4"
[283] "subtype1" "subtype1" "subtype4" "subtype2" "subtype5" "subtype2"
[289] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[295] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype5"
[301] "subtype1" "subtype1" "subtype5" "subtype4" "subtype5" "subtype5"
[307] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype4"
[313] "subtype2" "subtype1" "subtype5" "subtype5" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype5"
 [13] "subtype5" "subtype4" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype1" "subtype6" "subtype1" "subtype4" "subtype4" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
 [31] "subtype3" "subtype4" "subtype1" "subtype1" "subtype5" "subtype1"
 [37] "subtype3" "subtype4" "subtype5" "subtype3" "subtype5" "subtype1"
 [43] "subtype1" "subtype2" "subtype2" "subtype2" "subtype4" "subtype1"
 [49] "subtype4" "subtype2" "subtype5" "subtype4" "subtype5" "subtype4"
 [55] "subtype5" "subtype5" "subtype3" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [67] "subtype5" "subtype5" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype5" "subtype4" "subtype5" "subtype4" "subtype1"
 [79] "subtype3" "subtype5" "subtype3" "subtype3" "subtype2" "subtype1"
 [85] "subtype3" "subtype6" "subtype1" "subtype5" "subtype1" "subtype6"
 [91] "subtype1" "subtype4" "subtype4" "subtype5" "subtype4" "subtype2"
 [97] "subtype2" "subtype4" "subtype3" "subtype4" "subtype5" "subtype5"
[103] "subtype5" "subtype1" "subtype5" "subtype2" "subtype3" "subtype5"
[109] "subtype1" "subtype4" "subtype5" "subtype5" "subtype5" "subtype1"
[115] "subtype4" "subtype5" "subtype2" "subtype1" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[127] "subtype2" "subtype1" "subtype1" "subtype5" "subtype4" "subtype4"
[133] "subtype5" "subtype4" "subtype5" "subtype1" "subtype4" "subtype2"
[139] "subtype3" "subtype2" "subtype5" "subtype5" "subtype1" "subtype3"
[145] "subtype3" "subtype5" "subtype5" "subtype3" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype1" "subtype4" "subtype5" "subtype1"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype2" "subtype1" "subtype5" "subtype3"
[169] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype5" "subtype5" "subtype3" "subtype1" "subtype4" "subtype4"
[181] "subtype5" "subtype5" "subtype6" "subtype4" "subtype2" "subtype5"
[187] "subtype1" "subtype3" "subtype1" "subtype5" "subtype6" "subtype4"
[193] "subtype3" "subtype3" "subtype5" "subtype1" "subtype1" "subtype2"
[199] "subtype4" "subtype4" "subtype1" "subtype3" "subtype5" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype6" "subtype4"
[211] "subtype2" "subtype4" "subtype1" "subtype2" "subtype5" "subtype5"
[217] "subtype3" "subtype5" "subtype5" "subtype2" "subtype1" "subtype1"
[223] "subtype5" "subtype5" "subtype3" "subtype1" "subtype3" "subtype2"
[229] "subtype3" "subtype1" "subtype5" "subtype4" "subtype1" "subtype5"
[235] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype5"
[241] "subtype4" "subtype5" "subtype5" "subtype6" "subtype5" "subtype3"
[247] "subtype3" "subtype3" "subtype3" "subtype6" "subtype4" "subtype4"
[253] "subtype5" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[259] "subtype3" "subtype1" "subtype3" "subtype4" "subtype4" "subtype6"
[265] "subtype5" "subtype5" "subtype1" "subtype1" "subtype6" "subtype1"
[271] "subtype2" "subtype5" "subtype5" "subtype1" "subtype4" "subtype2"
[277] "subtype5" "subtype4" "subtype5" "subtype5" "subtype2" "subtype4"
[283] "subtype1" "subtype1" "subtype4" "subtype2" "subtype5" "subtype2"
[289] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype1"
[295] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype5"
[301] "subtype1" "subtype1" "subtype5" "subtype4" "subtype5" "subtype5"
[307] "subtype1" "subtype4" "subtype3" "subtype2" "subtype3" "subtype4"
[313] "subtype2" "subtype1" "subtype5" "subtype5" "subtype4"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 19 55
  subtype2 12 27
  subtype3  9 37
  subtype4 25 56
  subtype5 24 47
  subtype6  1  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   55
  subtype2   12   27
  subtype3    9   37
  subtype4   25   56
  subtype5   24   47
  subtype6    1    9
          vv
clus       T1 T2 T3 T4
  subtype1  7 13 14 27
  subtype2  2 15  7 10
  subtype3  0  9 17 13
  subtype4 11 25 11 19
  subtype5  8 17 14 29
  subtype6  0  2  2  6
D1V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 15  5 34  2
  subtype2 13  5 12  1
  subtype3 14  4 15  1
  subtype4 35  8 13  0
  subtype5 28 13 20  0
  subtype6  2  1  5  1
D1V5, multiclass
D1V6, binary
          cls
clus        0  1
  subtype1  9  2
  subtype2  5  1
  subtype3  6  1
  subtype4 21  1
  subtype5 18  1
  subtype6  0  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    2
  subtype2    5    1
  subtype3    6    1
  subtype4   21    1
  subtype5   18    1
  subtype6    0    0
          vv
clus        I II III IV
  subtype1  6  5   5 44
  subtype2  1  7   7 19
  subtype3  0  7  11 21
  subtype4  6 15  14 27
  subtype5  7 15   8 38
  subtype6  0  2   0  8
D1V7, multiclass
D1V8, binary
          cls
clus        0  1
  subtype1 22 52
  subtype2 10 29
  subtype3 11 35
  subtype4 20 61
  subtype5 13 58
  subtype6  0 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   52
  subtype2   10   29
  subtype3   11   35
  subtype4   20   61
  subtype5   13   58
  subtype6    0   10
D1V9, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          19
  subtype2                                           8
  subtype3                                          19
  subtype4                                          19
  subtype5                                          17
  subtype6                                           2
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     13             35
  subtype2                                      6             11
  subtype3                                      4             18
  subtype4                                     19             19
  subtype5                                     12             16
  subtype6                                      3              4
          vv
clus       LIFELONG NON-SMOKER
  subtype1                   5
  subtype2                  13
  subtype3                   3
  subtype4                  23
  subtype5                  21
  subtype6                   1
D1V10, multiclass
D1V11, continuous
D1V12, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 28 15
  subtype2 28 19
  subtype3 19 20
  subtype4 36  8
  subtype5 28 30
  subtype6 32 19
  subtype7  4  1
  subtype8 10  9
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
      43       47       39       44       58       51        5       19 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
      15       19       20        8       30       19        1        9 
$subtype1
TCGA-BA-4074 TCGA-BA-5555 TCGA-BA-6869 TCGA-BB-7864 TCGA-BB-7870 TCGA-CN-4727 
       15.16         6.12         8.02        23.61        37.87         6.38 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5356 
       11.28        12.59         7.89        11.44        26.63         9.50 
TCGA-CN-5360 TCGA-CN-6988 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-7364 
       28.47         1.38        13.25        14.96        11.77        47.18 
TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5441 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6954 
        5.13        29.92        87.55        11.24        15.06        65.82 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7250 
        7.13        28.31       111.12        36.00        26.20        95.34 
TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7421 TCGA-CV-7428 TCGA-CV-7435 
       11.87        18.41        17.82         0.07        54.90       142.49 
TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6823 TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7917 
       21.99         7.76         7.82        10.65         1.15         1.02 
TCGA-IQ-7631 
        4.01 

$subtype2
TCGA-BA-4075 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4224 TCGA-BB-4227 TCGA-CN-4725 
        9.30        12.99         3.72         9.04         4.37        10.19 
TCGA-CN-4736 TCGA-CN-4742 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6020 TCGA-CN-6996 
       12.99        13.05         8.52        13.58         3.19         3.75 
TCGA-CN-6998 TCGA-CQ-5329 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-7065 TCGA-CQ-7067 
        1.51        27.65        32.35        34.75        33.07        16.70 
TCGA-CR-6477 TCGA-CR-6493 TCGA-CR-7372 TCGA-CR-7379 TCGA-CR-7401 TCGA-CV-5439 
       16.90         9.27        24.95        34.06        35.41        17.95 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6959 
       13.35        57.07        48.59        43.23        40.96         8.38 
TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7243 
      126.12         1.84        71.21        10.75       114.94        31.33 
TCGA-CV-7247 TCGA-CV-7255 TCGA-CV-7411 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7438 
       18.97         2.10        89.33        25.02       100.54         6.38 
TCGA-D6-6517 TCGA-DQ-5624 TCGA-DQ-7592 TCGA-HD-7753 TCGA-IQ-7630 
        8.22        37.78         9.83         0.16         5.26 

$subtype3
TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5558 TCGA-BA-6870 
       13.64         8.15         6.25        27.78        53.75        14.79 
TCGA-BB-7863 TCGA-CN-4722 TCGA-CN-4734 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-6011 
       13.87         6.31         7.43         8.28        11.54         7.50 
TCGA-CN-6995 TCGA-CQ-5326 TCGA-CQ-5334 TCGA-CQ-7068 TCGA-CR-6484 TCGA-CR-7365 
        3.68         2.93         4.21        22.78        11.64        39.12 
TCGA-CR-7373 TCGA-CR-7380 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-6942 TCGA-CV-6952 
       29.23        19.92        64.73        17.06       126.08         6.08 
TCGA-CV-6955 TCGA-CV-7097 TCGA-CV-7104 TCGA-CV-7252 TCGA-CV-7413 TCGA-CV-7415 
       10.98        12.66        12.89         4.96         9.67        22.85 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7434 TCGA-CX-7219 TCGA-D6-6825 TCGA-D6-6826 
       56.48       156.49         7.13        27.22         5.00         5.03 
TCGA-DQ-5625 TCGA-DQ-7588 TCGA-HD-7229 
       34.78        14.04         0.07 

$subtype4
TCGA-BA-4077 TCGA-BA-5153 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 
       37.28        57.90        57.44         2.07        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7866 TCGA-CN-4741 TCGA-CN-5374 TCGA-CN-6013 
       18.31        10.19        20.98        28.77         9.01         5.06 
TCGA-CQ-5323 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       48.16        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6481 
       50.01        39.52        34.52        36.99        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7385 TCGA-CR-7399 
       11.34         7.66        40.90        35.84        32.78         5.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-6433 TCGA-CV-6441 
       48.36        17.16        76.47        84.39        13.32         5.88 
TCGA-CV-6939 TCGA-CV-7100 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       21.86         9.01        21.73        11.84        12.13        12.10 
TCGA-HD-7754 TCGA-HL-7533 
        0.82        22.75 

$subtype5
TCGA-BA-4078 TCGA-BA-7269 TCGA-BB-7862 TCGA-BB-7871 TCGA-CN-4723 TCGA-CN-4735 
        9.07         7.76        17.59        14.04        13.55        12.13 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 
        6.81         4.70         4.41         9.07         6.18         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5332 TCGA-CQ-6221 
        5.82         2.73         3.91         3.29        10.42        32.88 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
        3.42         3.06         0.99        27.02        12.89        29.82 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-5978 
      135.29       129.21       108.33        47.28        89.82         7.07 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 
       90.08         9.70        20.52        26.43        12.03        42.35 
TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7235 
       30.05         4.14         5.23        52.31        21.76        56.68 
TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7414 
       17.10        47.97        36.13        58.06        35.54         0.46 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7437 
       25.94        34.09        14.86         3.48        16.27        16.60 
TCGA-CX-7082 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7589 
       10.39         4.18        16.96        18.90 

$subtype6
TCGA-BA-5556 TCGA-BA-5557 TCGA-BB-4217 TCGA-BB-7872 TCGA-CN-4728 TCGA-CN-4733 
        5.88         7.96         6.12        14.33        10.68        17.16 
TCGA-CN-4738 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       14.33         5.69        12.39        11.84        11.57        12.49 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6022 TCGA-CQ-5325 TCGA-CQ-5331 
        6.61         5.23         1.48         6.61        21.50        33.80 
TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CR-6474 
       15.72        38.14        32.35         4.21        26.76        18.51 
TCGA-CR-6478 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7383 
        6.02        12.46        15.75        31.96        26.17        17.13 
TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       47.01        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CV-5971 TCGA-CV-6938 TCGA-CV-6943 TCGA-CV-6961 TCGA-CV-7089 
        7.10        17.75         4.70        19.79         2.50        64.80 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7410 TCGA-CV-7433 TCGA-CX-7085 TCGA-D6-6515 
        4.73        47.47       210.94        19.73        10.55        13.25 
TCGA-D6-6824 TCGA-DQ-5630 TCGA-IQ-7632 
        2.53        15.68         3.72 

$subtype7
TCGA-BA-6868 TCGA-CN-5361 TCGA-CQ-6218 TCGA-CV-5436 TCGA-D6-6516 
        5.00         6.35        28.60        19.20        10.68 

$subtype8
TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-5355 TCGA-CN-5364 TCGA-CQ-5324 TCGA-CQ-5327 
        4.67         5.46         9.17        16.21        39.68        38.89 
TCGA-CQ-5330 TCGA-CR-6491 TCGA-CR-7367 TCGA-CV-5977 TCGA-CV-6436 TCGA-CV-6934 
       29.46        11.51        47.34        33.11        24.43         2.14 
TCGA-CV-6936 TCGA-CV-6953 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7432 TCGA-DQ-5631 
        5.46        53.92        18.81         7.99        84.49        18.02 
TCGA-H7-7774 
        0.99 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
    0.07     0.16     0.07     0.82     0.46     1.48     5.00     0.99 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  142.49   126.12   156.49    95.05   135.29   210.94    28.60    84.49 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  13.250   13.580   12.660   22.305   14.450   14.330   10.680   18.020 
[1] "0.1 - 142.5 (13.2)" "0.2 - 126.1 (13.6)" "0.1 - 156.5 (12.7)"
[4] "0.8 - 95.0 (22.3)"  "0.5 - 135.3 (14.4)" "1.5 - 210.9 (14.3)"
[7] "5.0 - 28.6 (10.7)"  "1.0 - 84.5 (18.0)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype3"
  [7] "subtype3" "subtype3" "subtype4" "subtype1" "subtype6" "subtype6"
 [13] "subtype3" "subtype4" "subtype7" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype5" "subtype6" "subtype4" "subtype2"
 [25] "subtype4" "subtype2" "subtype4" "subtype4" "subtype5" "subtype3"
 [31] "subtype1" "subtype4" "subtype1" "subtype5" "subtype6" "subtype3"
 [37] "subtype5" "subtype2" "subtype8" "subtype1" "subtype6" "subtype8"
 [43] "subtype1" "subtype1" "subtype6" "subtype3" "subtype5" "subtype2"
 [49] "subtype1" "subtype6" "subtype1" "subtype1" "subtype4" "subtype2"
 [55] "subtype8" "subtype1" "subtype6" "subtype6" "subtype1" "subtype7"
 [61] "subtype3" "subtype8" "subtype3" "subtype6" "subtype6" "subtype6"
 [67] "subtype2" "subtype2" "subtype4" "subtype5" "subtype3" "subtype5"
 [73] "subtype4" "subtype6" "subtype6" "subtype6" "subtype5" "subtype2"
 [79] "subtype5" "subtype6" "subtype5" "subtype5" "subtype1" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype5" "subtype2"
 [91] "subtype4" "subtype8" "subtype6" "subtype3" "subtype8" "subtype2"
 [97] "subtype8" "subtype6" "subtype5" "subtype3" "subtype7" "subtype6"
[103] "subtype2" "subtype5" "subtype6" "subtype2" "subtype6" "subtype1"
[109] "subtype6" "subtype1" "subtype6" "subtype2" "subtype2" "subtype3"
[115] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype6" "subtype2"
[127] "subtype6" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[133] "subtype6" "subtype8" "subtype6" "subtype2" "subtype1" "subtype3"
[139] "subtype8" "subtype4" "subtype4" "subtype5" "subtype5" "subtype2"
[145] "subtype3" "subtype5" "subtype6" "subtype2" "subtype3" "subtype6"
[151] "subtype6" "subtype4" "subtype6" "subtype5" "subtype5" "subtype5"
[157] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
[163] "subtype1" "subtype4" "subtype2" "subtype1" "subtype4" "subtype5"
[169] "subtype4" "subtype5" "subtype5" "subtype5" "subtype7" "subtype2"
[175] "subtype5" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[181] "subtype2" "subtype6" "subtype2" "subtype2" "subtype8" "subtype5"
[187] "subtype2" "subtype2" "subtype4" "subtype8" "subtype4" "subtype5"
[193] "subtype8" "subtype5" "subtype8" "subtype5" "subtype6" "subtype4"
[199] "subtype5" "subtype1" "subtype3" "subtype6" "subtype5" "subtype5"
[205] "subtype1" "subtype5" "subtype3" "subtype8" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
[217] "subtype2" "subtype1" "subtype8" "subtype3" "subtype8" "subtype4"
[223] "subtype5" "subtype2" "subtype5" "subtype3" "subtype5" "subtype2"
[229] "subtype2" "subtype2" "subtype5" "subtype6" "subtype6" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype5" "subtype1" "subtype3"
[241] "subtype1" "subtype5" "subtype2" "subtype5" "subtype1" "subtype5"
[247] "subtype5" "subtype1" "subtype6" "subtype2" "subtype3" "subtype5"
[253] "subtype3" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[259] "subtype5" "subtype3" "subtype3" "subtype1" "subtype5" "subtype5"
[265] "subtype8" "subtype6" "subtype3" "subtype1" "subtype5" "subtype2"
[271] "subtype1" "subtype5" "subtype6" "subtype1" "subtype3" "subtype6"
[277] "subtype7" "subtype2" "subtype1" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype2" "subtype3" "subtype5" "subtype6" "subtype8"
[289] "subtype3" "subtype5" "subtype4" "subtype4" "subtype2" "subtype4"
[295] "subtype4" "subtype1" "subtype1" "subtype8" "subtype3" "subtype2"
[301] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype6"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype3"
  [7] "subtype3" "subtype3" "subtype4" "subtype1" "subtype6" "subtype6"
 [13] "subtype3" "subtype4" "subtype7" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype5" "subtype6" "subtype4" "subtype2"
 [25] "subtype4" "subtype2" "subtype4" "subtype4" "subtype5" "subtype3"
 [31] "subtype1" "subtype4" "subtype1" "subtype5" "subtype6" "subtype3"
 [37] "subtype5" "subtype2" "subtype8" "subtype1" "subtype6" "subtype8"
 [43] "subtype1" "subtype1" "subtype6" "subtype3" "subtype5" "subtype2"
 [49] "subtype1" "subtype6" "subtype1" "subtype1" "subtype4" "subtype2"
 [55] "subtype8" "subtype1" "subtype6" "subtype6" "subtype1" "subtype7"
 [61] "subtype3" "subtype8" "subtype3" "subtype6" "subtype6" "subtype6"
 [67] "subtype2" "subtype2" "subtype4" "subtype5" "subtype3" "subtype5"
 [73] "subtype4" "subtype6" "subtype6" "subtype6" "subtype5" "subtype2"
 [79] "subtype5" "subtype6" "subtype5" "subtype5" "subtype1" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype5" "subtype2"
 [91] "subtype4" "subtype8" "subtype6" "subtype3" "subtype8" "subtype2"
 [97] "subtype8" "subtype6" "subtype5" "subtype3" "subtype7" "subtype6"
[103] "subtype2" "subtype5" "subtype6" "subtype2" "subtype6" "subtype1"
[109] "subtype6" "subtype1" "subtype6" "subtype2" "subtype2" "subtype3"
[115] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype6" "subtype2"
[127] "subtype6" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[133] "subtype6" "subtype8" "subtype6" "subtype2" "subtype1" "subtype3"
[139] "subtype8" "subtype4" "subtype4" "subtype5" "subtype5" "subtype2"
[145] "subtype3" "subtype5" "subtype6" "subtype2" "subtype3" "subtype6"
[151] "subtype6" "subtype4" "subtype6" "subtype5" "subtype5" "subtype5"
[157] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
[163] "subtype1" "subtype4" "subtype2" "subtype1" "subtype4" "subtype5"
[169] "subtype4" "subtype5" "subtype5" "subtype5" "subtype7" "subtype2"
[175] "subtype5" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[181] "subtype2" "subtype6" "subtype2" "subtype2" "subtype8" "subtype5"
[187] "subtype2" "subtype2" "subtype4" "subtype8" "subtype4" "subtype5"
[193] "subtype8" "subtype5" "subtype8" "subtype5" "subtype6" "subtype4"
[199] "subtype5" "subtype1" "subtype3" "subtype6" "subtype5" "subtype5"
[205] "subtype1" "subtype5" "subtype3" "subtype8" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
[217] "subtype2" "subtype1" "subtype8" "subtype3" "subtype8" "subtype4"
[223] "subtype5" "subtype2" "subtype5" "subtype3" "subtype5" "subtype2"
[229] "subtype2" "subtype2" "subtype5" "subtype6" "subtype6" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype5" "subtype1" "subtype3"
[241] "subtype1" "subtype5" "subtype2" "subtype5" "subtype1" "subtype5"
[247] "subtype5" "subtype1" "subtype6" "subtype2" "subtype3" "subtype5"
[253] "subtype3" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[259] "subtype5" "subtype3" "subtype3" "subtype1" "subtype5" "subtype5"
[265] "subtype8" "subtype6" "subtype3" "subtype1" "subtype5" "subtype2"
[271] "subtype1" "subtype5" "subtype6" "subtype1" "subtype3" "subtype6"
[277] "subtype7" "subtype2" "subtype1" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype2" "subtype3" "subtype5" "subtype6" "subtype8"
[289] "subtype3" "subtype5" "subtype4" "subtype4" "subtype2" "subtype4"
[295] "subtype4" "subtype1" "subtype1" "subtype8" "subtype3" "subtype2"
[301] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype6"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype3"
  [7] "subtype3" "subtype3" "subtype4" "subtype1" "subtype6" "subtype6"
 [13] "subtype3" "subtype4" "subtype7" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype5" "subtype6" "subtype4" "subtype2"
 [25] "subtype4" "subtype2" "subtype4" "subtype4" "subtype5" "subtype3"
 [31] "subtype1" "subtype4" "subtype1" "subtype5" "subtype6" "subtype3"
 [37] "subtype5" "subtype2" "subtype8" "subtype1" "subtype6" "subtype8"
 [43] "subtype1" "subtype1" "subtype6" "subtype3" "subtype5" "subtype2"
 [49] "subtype1" "subtype6" "subtype1" "subtype1" "subtype4" "subtype2"
 [55] "subtype8" "subtype1" "subtype6" "subtype6" "subtype1" "subtype7"
 [61] "subtype3" "subtype8" "subtype3" "subtype6" "subtype6" "subtype6"
 [67] "subtype2" "subtype2" "subtype4" "subtype5" "subtype3" "subtype5"
 [73] "subtype4" "subtype6" "subtype6" "subtype6" "subtype5" "subtype2"
 [79] "subtype5" "subtype6" "subtype5" "subtype5" "subtype1" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype5" "subtype2"
 [91] "subtype4" "subtype8" "subtype6" "subtype3" "subtype8" "subtype2"
 [97] "subtype8" "subtype6" "subtype5" "subtype3" "subtype7" "subtype6"
[103] "subtype2" "subtype5" "subtype6" "subtype2" "subtype6" "subtype1"
[109] "subtype6" "subtype1" "subtype6" "subtype2" "subtype2" "subtype3"
[115] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype6" "subtype2"
[127] "subtype6" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[133] "subtype6" "subtype8" "subtype6" "subtype2" "subtype1" "subtype3"
[139] "subtype8" "subtype4" "subtype4" "subtype5" "subtype5" "subtype2"
[145] "subtype3" "subtype5" "subtype6" "subtype2" "subtype3" "subtype6"
[151] "subtype6" "subtype4" "subtype6" "subtype5" "subtype5" "subtype5"
[157] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
[163] "subtype1" "subtype4" "subtype2" "subtype1" "subtype4" "subtype5"
[169] "subtype4" "subtype5" "subtype5" "subtype5" "subtype7" "subtype2"
[175] "subtype5" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[181] "subtype2" "subtype6" "subtype2" "subtype2" "subtype8" "subtype5"
[187] "subtype2" "subtype2" "subtype4" "subtype8" "subtype4" "subtype5"
[193] "subtype8" "subtype5" "subtype8" "subtype5" "subtype6" "subtype4"
[199] "subtype5" "subtype1" "subtype3" "subtype6" "subtype5" "subtype5"
[205] "subtype1" "subtype5" "subtype3" "subtype8" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
[217] "subtype2" "subtype1" "subtype8" "subtype3" "subtype8" "subtype4"
[223] "subtype5" "subtype2" "subtype5" "subtype3" "subtype5" "subtype2"
[229] "subtype2" "subtype2" "subtype5" "subtype6" "subtype6" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype5" "subtype1" "subtype3"
[241] "subtype1" "subtype5" "subtype2" "subtype5" "subtype1" "subtype5"
[247] "subtype5" "subtype1" "subtype6" "subtype2" "subtype3" "subtype5"
[253] "subtype3" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[259] "subtype5" "subtype3" "subtype3" "subtype1" "subtype5" "subtype5"
[265] "subtype8" "subtype6" "subtype3" "subtype1" "subtype5" "subtype2"
[271] "subtype1" "subtype5" "subtype6" "subtype1" "subtype3" "subtype6"
[277] "subtype7" "subtype2" "subtype1" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype2" "subtype3" "subtype5" "subtype6" "subtype8"
[289] "subtype3" "subtype5" "subtype4" "subtype4" "subtype2" "subtype4"
[295] "subtype4" "subtype1" "subtype1" "subtype8" "subtype3" "subtype2"
[301] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype6"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1  7 36
  subtype2 17 30
  subtype3 15 25
  subtype4  5 39
  subtype5 15 43
  subtype6 18 35
  subtype7  1  4
  subtype8  7 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7   36
  subtype2   17   30
  subtype3   15   25
  subtype4    5   39
  subtype5   15   43
  subtype6   18   35
  subtype7    1    4
  subtype8    7   12
          vv
clus       T1 T2 T3 T4
  subtype1  2 10 11 17
  subtype2  7 14 12 10
  subtype3  1 10  5 19
  subtype4  4  9  5  8
  subtype5  1 13 13 23
  subtype6  8 18  8 17
  subtype7  1  0  2  1
  subtype8  0  4  7  7
D2V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 21  4 11  1
  subtype2 19  4 14  0
  subtype3 15  4  9  2
  subtype4  9  5  9  0
  subtype5 12  5 24  2
  subtype6 18  8 22  0
  subtype7  1  0  3  0
  subtype8  6  2  8  0
D2V5, multiclass
D2V6, binary
          cls
clus        0
  subtype1  5
  subtype2  6
  subtype3  5
  subtype4 12
  subtype5  4
  subtype6 19
  subtype7  1
  subtype8  2
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  1  7   8 24
  subtype2  6  9  10 17
  subtype3  1  8   2 24
  subtype4  2  3   6 13
  subtype5  1  8   6 34
  subtype6  5  9   7 29
  subtype7  1  0   0  3
  subtype8  0  3   3 12
D2V7, multiclass
D2V8, binary
          cls
clus        0  1
  subtype1  7 36
  subtype2 10 37
  subtype3 11 29
  subtype4 10 34
  subtype5 16 42
  subtype6 17 36
  subtype7  2  3
  subtype8  5 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7   36
  subtype2   10   37
  subtype3   11   29
  subtype4   10   34
  subtype5   16   42
  subtype6   17   36
  subtype7    2    3
  subtype8    5   14
D2V9, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          12
  subtype2                                           7
  subtype3                                           9
  subtype4                                          14
  subtype5                                          23
  subtype6                                           8
  subtype7                                           3
  subtype8                                           6
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                      7             21
  subtype2                                     10              9
  subtype3                                      6             11
  subtype4                                      6             11
  subtype5                                      8             21
  subtype6                                     14             17
  subtype7                                      0              2
  subtype8                                      4              7
          vv
clus       LIFELONG NON-SMOKER
  subtype1                   2
  subtype2                  18
  subtype3                  11
  subtype4                  13
  subtype5                   3
  subtype6                  13
  subtype7                   0
  subtype8                   2
D2V10, multiclass
D2V11, continuous
D2V12, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 33 40
  subtype2 29 23
  subtype3 15 14
  subtype4 28 30
subtype1 subtype2 subtype3 subtype4 
      73       52       29       58 
subtype1 subtype2 subtype3 subtype4 
      40       23       14       30 
$subtype1
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6870 
       15.16         8.15         6.25         5.88         7.96        14.79 
TCGA-BA-6873 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 
        3.72        13.55        10.19         4.67         6.38         5.46 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5359 TCGA-CN-5363 
       17.16        12.13        14.33        11.44        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6020 
       16.21        12.49         9.01         7.50         1.48         3.19 
TCGA-CN-6021 TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-6219 TCGA-CV-5431 
        9.07         2.93        27.65        33.80        15.72        17.16 
TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5977 
      129.21        17.95        84.39        17.06        17.75        33.11 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6942 
       43.23        40.96        24.43         5.46        20.52       126.08 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       12.03        15.06        10.98         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7178 
        4.14        64.80       126.12         7.99         9.01        71.21 
TCGA-CV-7180 TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       10.75        18.97         4.96        11.87        47.97        36.13 
TCGA-CV-7406 TCGA-CV-7422 TCGA-CV-7427 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7438 
       58.06        34.09       156.49        16.27        84.49         6.38 
TCGA-CV-7440 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 TCGA-DQ-7592 TCGA-IQ-7630 
       21.99        27.22        13.25         7.82         9.83         5.26 
TCGA-IQ-7632 
        3.72 

$subtype2
TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6869 
        9.07        27.78        57.90         6.12        57.44         8.02 
TCGA-BA-6871 TCGA-BB-4217 TCGA-CN-4730 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5361 
        2.07         6.12        11.28         9.17         9.50         6.35 
TCGA-CN-5366 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
       11.84         6.81         5.06         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         2.73         3.68         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5327 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6228 
       39.68        38.89        10.42         4.21        32.35        14.96 
TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5441 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6933 
      135.29       108.33        87.55        13.32         5.88        90.08 
TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-7091 TCGA-CV-7097 
        9.70        21.86        42.35        65.82       111.12        12.66 
TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7424 TCGA-CV-7429 
       36.00        17.10        22.85        25.94        14.86         3.48 
TCGA-CV-7433 TCGA-CV-7437 TCGA-D6-6827 TCGA-DQ-7591 
       19.73        16.60         4.18        11.84 

$subtype3
TCGA-BA-6872 TCGA-CN-4722 TCGA-CN-5365 TCGA-CN-5373 TCGA-CQ-6218 TCGA-CQ-6229 
       12.99         6.31        11.54        13.58        28.60        26.76 
TCGA-CQ-7068 TCGA-CV-5442 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6951 TCGA-CV-6952 
       22.78        76.47        26.43        11.24        30.05         6.08 
TCGA-CV-6953 TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7250 
       53.92        21.76       114.94        47.47        26.20        95.34 
TCGA-CV-7413 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7428 TCGA-CV-7434 TCGA-CX-7086 
        9.67       100.54        56.48        54.90         7.13         7.76 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         2.53         5.00         5.03 

$subtype4
TCGA-CN-4728 TCGA-CN-4731 TCGA-CN-4734 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 
       10.68        12.59         7.43        12.99         7.89        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5370 
       28.77        13.05         5.69        28.47        11.57         8.52 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6994 
        4.70         6.61         5.23         4.41         6.61         3.91 
TCGA-CN-6996 TCGA-CQ-5325 TCGA-CQ-5330 TCGA-CQ-6221 TCGA-CQ-6222 TCGA-CQ-6224 
        3.75        21.50        29.46        32.88        38.14        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-7065 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 
       13.25         4.21        33.07        19.20        89.82        64.73 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6934 TCGA-CV-6938 
       13.35        57.07        48.59         7.07         2.14         4.70 
TCGA-CV-6943 TCGA-CV-6956 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       19.79         7.13        18.81         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7243 TCGA-CV-7255 TCGA-CV-7263 
       12.89        56.68         4.73        31.33         2.10        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 
       35.54       210.94        89.33         0.46        25.02         0.07 
TCGA-CV-7435 TCGA-CV-7446 TCGA-CV-7568 TCGA-CX-7085 
      142.49        35.93        30.48        10.55 

subtype1 subtype2 subtype3 subtype4 
    1.48     1.38     2.53     0.07 
subtype1 subtype2 subtype3 subtype4 
  156.49   135.29   114.94   210.94 
subtype1 subtype2 subtype3 subtype4 
   13.25    11.84    21.76    13.15 
[1] "1.5 - 156.5 (13.2)" "1.4 - 135.3 (11.8)" "2.5 - 114.9 (21.8)"
[4] "0.1 - 210.9 (13.2)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [79] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype1"
[121] "subtype1" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[157] "subtype4" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [79] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype1"
[121] "subtype1" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[157] "subtype4" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype4"
 [31] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [37] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [55] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [61] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
 [79] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
 [91] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype4" "subtype1" "subtype4" "subtype2" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[109] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype4" "subtype2" "subtype1"
[121] "subtype1" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[127] "subtype4" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[145] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[151] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[157] "subtype4" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
[169] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype4"
[175] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
[181] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
[193] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 21 52
  subtype2  6 46
  subtype3 13 16
  subtype4 22 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   52
  subtype2    6   46
  subtype3   13   16
  subtype4   22   36
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       21        6       13       22
  MALE         52       46       16       36
          vv
clus       T1 T2 T3 T4
  subtype1  3 26 13 28
  subtype2  4  5 17 22
  subtype3  3 10  7  8
  subtype4  3 18 16 21
D3V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 28  8 22  1
  subtype2 14  2 27  1
  subtype3 15  3  6  1
  subtype4 16  7 24  1
D3V5, multiclass
D3V6, binary
          cls
clus       0
  subtype1 8
  subtype2 5
  subtype3 0
  subtype4 7
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  1 18  11 39
  subtype2  3  4   7 33
  subtype3  3  8   6 11
  subtype4  2  9   7 38
D3V7, multiclass
D3V8, binary
          cls
clus        0  1
  subtype1 20 53
  subtype2 17 35
  subtype3  3 26
  subtype4 16 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   53
  subtype2   17   35
  subtype3    3   26
  subtype4   16   42
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        20       17        3       16
  YES       53       35       26       42
D3V9, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          21
  subtype2                                          15
  subtype3                                           9
  subtype4                                          15
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     10             22
  subtype2                                      8             18
  subtype3                                      4              8
  subtype4                                     16             16
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  16
  subtype2                   8
  subtype3                   7
  subtype4                   9
D3V10, multiclass
D3V11, continuous
D3V12, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 60 56
  subtype2 37 41
  subtype3  8 10
subtype1 subtype2 subtype3 
     116       78       18 
subtype1 subtype2 subtype3 
      56       41       10 
$subtype1
TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6869 
        9.07        27.78        57.90         6.12        57.44         8.02 
TCGA-BA-6871 TCGA-CN-4722 TCGA-CN-4731 TCGA-CN-4734 TCGA-CN-4740 TCGA-CN-4741 
        2.07         6.31        12.59         7.43        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5367 
       13.05         9.50         5.69        28.47        11.54        11.57 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 
        8.52        13.58         9.01         6.61         5.23         4.41 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 
        2.73         3.91         3.68         3.75         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-5334 
       39.68        21.50        38.89        29.46        10.42         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        38.14        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CV-5430 TCGA-CV-5434 
        4.21        14.96        26.76        33.07       135.29       108.33 
TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6934 
       57.07        48.59         7.07        13.32         5.88         2.14 
TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6951 
        9.70         4.70        11.24        19.79        42.35        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        6.08        53.92        65.82       111.12        18.81        12.66 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
        5.23         1.84        12.89        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7255 TCGA-CV-7263 
       36.00        31.33        26.20        95.34         2.10        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
       35.54       210.94        89.33         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7428 
       25.94         0.07       100.54        14.86        56.48        54.90 
TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7446 
        3.48        19.73         7.13       142.49        16.60        35.93 
TCGA-CV-7568 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       30.48        10.55         7.76         8.22         2.53         5.00 
TCGA-D6-6827 TCGA-DQ-7591 
        4.18        11.84 

$subtype2
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6870 
       15.16         8.15         6.25         5.88         7.96        14.79 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 
       12.99         3.72         6.12        13.55         6.38         5.46 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5355 TCGA-CN-5359 
       17.16        12.13        14.33        11.44         9.17        12.39 
TCGA-CN-5361 TCGA-CN-5363 TCGA-CN-5366 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6018 
        6.35         8.28        11.84         7.50         5.06         1.48 
TCGA-CN-6020 TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-6219 TCGA-CQ-7068 
        3.19         2.93        27.65        33.80        15.72        22.78 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5977 
       17.16       129.21        17.95        17.06        17.75        33.11 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6937 
       43.23        40.96        24.43        90.08         5.46        20.52 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6955 TCGA-CV-6959 
       26.43       126.08        12.03        15.06        10.98         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 
       28.31         2.50         4.14        64.80       126.12         7.99 
TCGA-CV-7100 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7247 
        9.01        21.76        71.21        10.75       114.94        18.97 
TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7413 
       17.10         4.96        11.87        36.13        58.06         9.67 
TCGA-CV-7427 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7219 
      156.49        16.27        84.49         6.38        21.99        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-DQ-7592 TCGA-IQ-7630 TCGA-IQ-7632 
       13.25        10.68         7.82         9.83         5.26         3.72 

$subtype3
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4736 TCGA-CN-4737 
       10.19         4.67        10.68        11.28        12.99         7.89 
TCGA-CN-5364 TCGA-CN-5369 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6997 TCGA-CV-5970 
       16.21        12.49         6.81         4.70         3.29        13.35 
TCGA-CV-6939 TCGA-CV-6956 TCGA-CV-7103 TCGA-CV-7254 TCGA-CV-7422 TCGA-D6-6826 
       21.86         7.13        52.31        47.97        34.09         5.03 

subtype1 subtype2 subtype3 
    0.07     1.48     3.29 
subtype1 subtype2 subtype3 
  210.94   156.49    52.31 
subtype1 subtype2 subtype3 
   14.22    13.12    10.98 
[1] "0.1 - 210.9 (14.2)" "1.5 - 156.5 (13.1)" "3.3 - 52.3 (11.0)" 
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 35 81
  subtype2 22 56
  subtype3  5 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   81
  subtype2   22   56
  subtype3    5   13
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       35       22        5
  MALE         81       56       13
          vv
clus       T1 T2 T3 T4
  subtype1  8 27 36 40
  subtype2  4 28 12 31
  subtype3  1  4  5  8
D4V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 41  8 44  3
  subtype2 30  9 24  1
  subtype3  2  3 11  0
D4V5, multiclass
D4V6, binary
          cls
clus        0
  subtype1 11
  subtype2  7
  subtype3  2
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  7 17  18 67
  subtype2  2 20  12 40
  subtype3  0  2   1 14
D4V7, multiclass
D4V8, binary
          cls
clus        0  1
  subtype1 28 88
  subtype2 22 56
  subtype3  6 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   88
  subtype2   22   56
  subtype3    6   12
     clus
vv    subtype1 subtype2 subtype3
  NO        28       22        6
  YES       88       56       12
D4V9, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          35
  subtype2                                          21
  subtype3                                           4
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     27             32
  subtype2                                     10             23
  subtype3                                      1              9
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  18
  subtype2                  18
  subtype3                   4
D4V10, multiclass
D4V11, continuous
D4V12, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 76 42
  subtype2 51 40
  subtype3 52 38
subtype1 subtype2 subtype3 
     118       91       90 
subtype1 subtype2 subtype3 
      42       40       38 
$subtype1
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-6869 
       15.16        37.28         9.07        57.90         6.12         8.02 
TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 
        2.07         7.76         6.12        95.05         4.60        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       10.19        17.59        23.61        20.98        37.87        14.04 
TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 
       13.55         6.38        12.59        12.13        14.33        11.44 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5374 TCGA-CN-6010 
       28.77         9.50        28.47         6.35         9.01         6.81 
TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 
        4.70         9.07         6.18         1.38         2.73         3.91 
TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 TCGA-CQ-6228 
        3.29        48.16        10.42        32.88        13.25        14.96 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6482 
       50.01        34.52        36.99         6.02        10.22        11.34 
TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
        7.66        47.18        40.90        35.84         3.42         3.06 
TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7393 TCGA-CR-7398 
        0.99        32.78        27.02        12.89        29.85         5.13 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 
       84.39         7.07        13.32        90.08         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-6960 
       20.52        21.86        11.24       126.08        42.35        28.31 
TCGA-CV-6962 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7236 
        4.14         9.01         5.23        21.76        56.68         4.73 
TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       36.00        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
       35.54        17.82         0.46        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7430 TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-6824 TCGA-D6-6826 
       14.86        16.27        16.60        21.99         2.53         5.03 
TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       16.96        18.90        21.73        11.84        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7754 TCGA-IQ-7631 
       10.65         1.15         0.82         4.01 

$subtype2
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5559 TCGA-BA-6873 TCGA-BB-7872 TCGA-CN-4725 
        9.30         8.15        57.44         3.72        14.33        10.19 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-5355 
       10.68        17.16        12.99         7.89        26.63         9.17 
TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 
        5.69         8.28        16.21        11.84        11.57         8.52 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 
        5.06         6.61         5.23         1.48         4.41         6.61 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CQ-5325 TCGA-CQ-5329 TCGA-CQ-5330 
        7.36         5.82         3.68        21.50        27.65        29.46 
TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 
       15.72        38.14        32.35         4.21        26.76        16.70 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 
       18.51        16.90        12.46        39.12        24.95        31.96 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7397 TCGA-CR-7401 
       26.17        17.13        47.01        30.02         7.10        35.41 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 
      108.33        47.28        19.20        89.82        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6934 
       13.35        17.75        48.59        43.23         5.88         2.14 
TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       26.43        15.06        30.05         7.13         8.38         2.50 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 
       18.81        12.66         1.84        52.31        12.89        71.21 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7415 
       47.47        31.33        18.97        18.41        58.06        22.85 
TCGA-CV-7429 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 
        3.48       142.49         6.38        10.39        10.55        13.25 
TCGA-D6-6825 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 
        5.00        37.78        34.78        15.68        18.02         9.83 
TCGA-HD-7753 
        0.16 

$subtype3
TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       13.64         6.25        27.78         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BB-4224 TCGA-BB-7863 TCGA-CN-4722 
        5.00        14.79        12.99         9.04        13.87         6.31 
TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4734 TCGA-CN-4742 TCGA-CN-5359 
        4.67         5.46        11.28         7.43        13.05        12.39 
TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6020 TCGA-CN-6998 
       11.54        12.49        13.58         7.50         3.19         1.51 
TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       39.68         2.93        33.80         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-6471 TCGA-CR-6484 TCGA-CR-6491 
       34.75        33.07        22.78        39.52        11.64        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7380 
       15.75         9.27        47.34        29.23        34.06        19.92 
TCGA-CR-7390 TCGA-CR-7392 TCGA-CR-7394 TCGA-CR-7395 TCGA-CV-5439 TCGA-CV-5441 
       29.82        31.10        29.52        30.54        17.95        87.55 
TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6938 
       76.47        57.07        33.11        40.96        24.43         4.70 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       19.79        12.03         6.08        53.92        65.82        10.98 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7180 TCGA-CV-7183 
       64.80       126.12       111.12         7.99        10.75       114.94 
TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       26.20         4.96         2.10       210.94        89.33         9.67 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 
       25.02       100.54       156.49        54.90        84.49        19.73 
TCGA-CV-7434 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.13         7.76        27.22        10.68         8.22         7.82 
TCGA-DQ-7588 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7917 TCGA-IQ-7630 TCGA-IQ-7632 
       14.04         0.99         0.07         1.02         5.26         3.72 

subtype1 subtype2 subtype3 
    0.07     0.16     0.07 
subtype1 subtype2 subtype3 
  135.29   142.49   210.94 
subtype1 subtype2 subtype3 
  14.185   15.720   13.955 
[1] "0.1 - 135.3 (14.2)" "0.2 - 142.5 (15.7)" "0.1 - 210.9 (14.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 25 93
  subtype2 27 66
  subtype3 29 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   93
  subtype2   27   66
  subtype3   29   62
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       25       27       29
  MALE         93       66       62
          vv
clus       T1 T2 T3 T4
  subtype1  6 25 24 36
  subtype2 13 25 19 29
  subtype3  4 28 17 36
D5V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 34 10 32  3
  subtype2 28 10 42  1
  subtype3 38 12 23  1
D5V5, multiclass
D5V6, binary
          cls
clus        0
  subtype1 20
  subtype2 20
  subtype3 14
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  2 15  17 54
  subtype2 11 12  10 52
  subtype3  3 20  14 47
D5V7, multiclass
D5V8, binary
          cls
clus        0  1
  subtype1 25 93
  subtype2 27 66
  subtype3 23 68
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   93
  subtype2   27   66
  subtype3   23   68
     clus
vv    subtype1 subtype2 subtype3
  NO        25       27       23
  YES       93       66       68
D5V9, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          37
  subtype2                                          24
  subtype3                                          21
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     17             42
  subtype2                                     16             29
  subtype3                                     20             27
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  17
  subtype2                  21
  subtype3                  20
D5V10, multiclass
D5V11, continuous
D5V12, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 52 43
  subtype2 48 36
  subtype3 79 41
subtype1 subtype2 subtype3 
      95       84      120 
subtype1 subtype2 subtype3 
      43       36       41 
$subtype1
TCGA-BA-5149 TCGA-BA-5557 TCGA-BA-6873 TCGA-BB-4224 TCGA-CN-4725 TCGA-CN-4726 
        8.15         7.96         3.72         9.04        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 
       10.68        17.16        12.99         7.89        26.63        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
        9.17         5.69         8.28        16.21        11.84        11.57 
TCGA-CN-5370 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        8.52         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6998 TCGA-CQ-5325 
        6.61         7.36         5.82         3.68         1.51        21.50 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 
       27.65        29.46        15.72        38.14        32.35         4.21 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6474 TCGA-CR-6488 TCGA-CR-7365 
       26.76        33.07        16.70        18.51        12.46        39.12 
TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 
       24.95        31.96        26.17        17.13        47.01        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 
       31.10        29.85         7.10        35.41       108.33        47.28 
TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       89.82        64.73        17.06        13.35        17.75        48.59 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
        5.88         2.14        26.43        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 
        6.08         7.13         8.38         2.50        18.81        12.66 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7238 TCGA-CV-7243 
        1.84        52.31        12.89        71.21        47.47        31.33 
TCGA-CV-7247 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7423 TCGA-CV-7429 
       18.97         2.10        18.41        58.06       100.54         3.48 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6825 
      142.49         6.38        10.39        10.55        13.25         5.00 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 
       37.78        34.78        15.68        18.02         9.83 

$subtype2
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5558 
        9.30        13.64         6.25        27.78         5.88        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BB-7863 TCGA-BB-7872 TCGA-CN-4722 
        5.00        14.79        12.99        13.87        14.33         6.31 
TCGA-CN-4723 TCGA-CN-4729 TCGA-CN-4734 TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5369 
       13.55         5.46         7.43        12.39        11.54        12.49 
TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6020 TCGA-CN-6994 TCGA-CQ-5324 TCGA-CQ-5326 
       13.58         7.50         3.19         3.91        39.68         2.93 
TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-7068 
       33.80         4.21        28.60        32.35        34.75        22.78 
TCGA-CR-6471 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 
       39.52        16.90         6.02        11.64        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7394 
        9.27        47.34        29.23        34.06        19.92        29.52 
TCGA-CR-7395 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 
       30.54        19.20        17.95        76.47        57.07        33.11 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6942 
       43.23        40.96        24.43        20.52         4.70       126.08 
TCGA-CV-6945 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 
       12.03        53.92        10.98        64.80       126.12         7.99 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7252 TCGA-CV-7410 TCGA-CV-7411 
       10.75       114.94         4.73         4.96       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7427 TCGA-CV-7432 TCGA-CV-7433 
        9.67        22.85        25.02       156.49        84.49        19.73 
TCGA-CV-7434 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6826 
        7.13         7.76        27.22        10.68         8.22         5.03 
TCGA-DQ-7588 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-IQ-7630 TCGA-IQ-7632 
       14.04         0.99         0.07         0.16         5.26         3.72 

$subtype3
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 
       15.16        37.28         9.07        57.90         6.12        57.44 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
        8.02         2.07         7.76         6.12        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        17.59        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 
       14.04         6.38        11.28        12.59        12.13        14.33 
TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5374 
       11.44        28.77         9.50        28.47         6.35         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 
        6.81         4.70         9.07         6.18         1.38         2.73 
TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 TCGA-CQ-6228 
        3.29        48.16        10.42        32.88        13.25        14.96 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 
       50.01        34.52        36.99        10.22        11.34         7.66 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 
       47.18        40.90        35.84         3.42         3.06         0.99 
TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7399 
       32.78        27.02        12.89        29.82         5.13         5.92 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5441 
       29.92        48.36       135.29        17.16       129.21        87.55 
TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 
       84.39         7.07        13.32        90.08         9.70         5.46 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6962 
       21.86        11.24        42.35        65.82        28.31         4.14 
TCGA-CV-7091 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7242 
      111.12         9.01         5.23        21.76        56.68        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       26.20        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
       35.54        17.82         0.46        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-6823 
       14.86        54.90        16.27        16.60        21.99         7.82 
TCGA-D6-6824 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
        2.53        16.96        18.90        21.73        11.84        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7754 TCGA-HD-7917 TCGA-IQ-7631 
       12.10        10.65         1.15         0.82         1.02         4.01 

subtype1 subtype2 subtype3 
    1.48     0.07     0.07 
subtype1 subtype2 subtype3 
  142.49   210.94   135.29 
subtype1 subtype2 subtype3 
  15.060   13.955   15.060 
[1] "1.5 - 142.5 (15.1)" "0.1 - 210.9 (14.0)" "0.1 - 135.3 (15.1)"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 31 66
  subtype2 29 56
  subtype3 21 99
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31   66
  subtype2   29   56
  subtype3   21   99
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       31       29       21
  MALE         66       56       99
          vv
clus       T1 T2 T3 T4
  subtype1 13 27 22 30
  subtype2  4 26 15 32
  subtype3  6 25 23 39
D6V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 27 12 45  1
  subtype2 37 10 20  1
  subtype3 36 10 32  3
D6V5, multiclass
D6V6, binary
          cls
clus        0
  subtype1 22
  subtype2 12
  subtype3 20
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  9 14  12 56
  subtype2  4 18  13 41
  subtype3  3 15  16 56
D6V7, multiclass
D6V8, binary
          cls
clus        0  1
  subtype1 28 69
  subtype2 20 65
  subtype3 27 93
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   69
  subtype2   20   65
  subtype3   27   93
     clus
vv    subtype1 subtype2 subtype3
  NO        28       20       27
  YES       69       65       93
D6V9, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          24
  subtype2                                          21
  subtype3                                          37
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     19             29
  subtype2                                     17             22
  subtype3                                     17             47
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  23
  subtype2                  20
  subtype3                  15
D6V10, multiclass
D6V11, continuous
D6V12, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 66 30
  subtype2 77 51
  subtype3 55 42
subtype1 subtype2 subtype3 
      96      128       97 
subtype1 subtype2 subtype3 
      30       51       42 
$subtype1
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 
       15.16         8.15         6.25        27.78        57.90         5.88 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BB-4217 
        7.96        53.75         5.00         8.02        12.99         6.12 
TCGA-BB-4224 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-CN-4725 
        9.04        13.87        23.61        20.98        14.33        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-5361 TCGA-CN-5363 
        4.67         6.38         5.46        11.28         6.35         8.28 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6021 
       11.54        11.84        12.49        13.58         7.50         9.07 
TCGA-CN-6995 TCGA-CN-6998 TCGA-CQ-5326 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5334 
        3.68         1.51         2.93        27.65        33.80         4.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CR-6473 TCGA-CR-6478 
       28.60        32.88        48.03        45.27        36.99         6.02 
TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7373 TCGA-CR-7390 
       11.64        11.51        15.75         9.27        29.23        29.82 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5973 
       29.52        30.54        17.95        87.55        76.47        57.07 
TCGA-CV-5977 TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6954 
       33.11        24.43         4.70       126.08        12.03        65.82 
TCGA-CV-6955 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7183 TCGA-CV-7235 
       10.98        64.80       126.12       111.12       114.94        56.68 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 
      210.94        89.33         9.67       156.49        54.90        84.49 
TCGA-CV-7434 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 
        7.13        21.99         7.76        27.22        10.68         8.22 
TCGA-D6-6823 TCGA-D6-8569 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        7.82         4.18        16.96        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-F7-8489 TCGA-H7-8501 TCGA-HD-7229 
       21.73         9.83        12.13         0.43         1.87         0.07 
TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 
        0.16         1.02         0.99        22.75         5.26         3.72 

$subtype2
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 
       13.64        37.28         9.07         6.12        14.79         2.07 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
       95.05         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4731 
       37.87        14.04        20.52         6.31        13.55        12.59 
TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5359 
       12.13        14.33        11.44        28.77         9.50        12.39 
TCGA-CN-5360 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6018 
       28.47         9.01         6.81         4.70         5.06         1.48 
TCGA-CN-6019 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 
        4.41         6.18         1.38         2.73         3.91         3.29 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5332 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 
       48.16        39.68        10.42        34.75        13.25        14.96 
TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       22.78        29.59        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6480 
       26.24        58.42        50.01        39.52        34.52        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 
       10.22        11.34         7.66        47.18        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 
       35.84         3.42         3.06         0.99        32.78        27.02 
TCGA-CR-7389 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
       12.89         5.13         5.92        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5443 TCGA-CV-5978 
       17.16       129.21       108.33        47.28        84.39         7.07 
TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6939 
       13.32        90.08         9.70         5.46        20.52        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6960 TCGA-CV-6962 
       26.43        11.24        42.35        53.92        28.31         4.14 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7236 
        7.99         9.01         5.23        52.31        21.76         4.73 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7415 
       47.97        36.13        58.06        17.82         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7430 
       25.02        25.94         0.07        14.86        56.48        16.27 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7446 TCGA-CX-7082 TCGA-D6-6826 TCGA-D6-6827 
      142.49        16.60        35.93        10.39         5.03         4.18 
TCGA-DQ-7591 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7754 
       11.84        10.65         1.15         0.46         0.99         0.82 
TCGA-HD-8314 TCGA-IQ-7631 
        1.45         4.01 

$subtype3
TCGA-BA-5559 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-8596 TCGA-CN-4728 TCGA-CN-4733 
       57.44         3.72         7.76        71.05        10.68        17.16 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       12.99         7.89        26.63        13.05         9.17         5.69 
TCGA-CN-5364 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6020 
       16.21        11.57         8.52         6.61         5.23         3.19 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6996 TCGA-CQ-5325 TCGA-CQ-5327 
        6.61         7.36         5.82         3.75        21.50        38.89 
TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6222 TCGA-CQ-6224 
       29.46        11.21        15.72        32.35        38.14        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6474 TCGA-CR-6477 
        4.21        26.76        33.07        16.70        18.51        16.90 
TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       12.46        39.12        24.95        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       26.17        17.13        47.01        30.02        31.10        29.85 
TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 
        7.10        35.41        19.20        89.82        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 
       13.35        17.75        48.59        43.23        40.96         5.88 
TCGA-CV-6934 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 
        2.14        19.79        15.06        30.05         6.08         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7104 
        8.38         2.50        18.81        12.66         1.84        12.89 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7255 
       71.21        10.75        47.47        31.33        18.97         2.10 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7433 
       18.41        35.54        34.09       100.54         3.48        19.73 
TCGA-CV-7438 TCGA-CV-7568 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6825 
        6.38        30.48        10.55        13.25         2.53         5.00 
TCGA-D6-8568 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7594 TCGA-HD-8224 
        3.45        37.78        34.78        15.68        12.10         1.81 
TCGA-HD-8635 
        0.99 

subtype1 subtype2 subtype3 
    0.07     0.07     0.99 
subtype1 subtype2 subtype3 
  210.94   142.49   100.54 
subtype1 subtype2 subtype3 
  12.740   14.185   16.900 
[1] "0.1 - 210.9 (12.7)" "0.1 - 142.5 (14.2)" "1.0 - 100.5 (16.9)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[235] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[235] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[235] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[277] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype2" "subtype1"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 22 76
  subtype2 35 93
  subtype3 35 64
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   76
  subtype2   35   93
  subtype3   35   64
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       22       35       35
  MALE         76       93       64
          vv
clus       T1 T2 T3 T4
  subtype1  8 29 14 32
  subtype2  7 26 28 45
  subtype3 13 28 23 29
D7V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 36 10 24  2
  subtype2 43 11 39  3
  subtype3 27 15 40  0
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 16  3
  subtype2 21  1
  subtype3 22  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16    3
  subtype2   21    1
  subtype3   22    2
    clus
vv   subtype1 subtype2 subtype3
  M0       16       21       22
  MX        3        1        2
          vv
clus        I II III IV
  subtype1  7 19  10 44
  subtype2  4 17  19 65
  subtype3  9 15  15 53
D7V7, multiclass
D7V8, binary
          cls
clus         0   1
  subtype1  23  75
  subtype2  28 100
  subtype3  26  73
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   23   75
  subtype2   28  100
  subtype3   26   73
     clus
vv    subtype1 subtype2 subtype3
  NO        23       28       26
  YES       75      100       73
D7V9, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          27
  subtype2                                          36
  subtype3                                          22
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     17             34
  subtype2                                     19             45
  subtype3                                     22             26
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  18
  subtype2                  21
  subtype3                  27
D7V10, multiclass
D7V11, continuous
D7V12, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1  72  49
  subtype2   4   7
  subtype3 122  67
subtype1 subtype2 subtype3 
     121       11      189 
subtype1 subtype2 subtype3 
      49        7       67 
$subtype1
TCGA-BA-5559 TCGA-BA-6873 TCGA-BB-7872 TCGA-BB-8596 TCGA-CN-4725 TCGA-CN-4728 
       57.44         3.72        14.33        71.05        10.19        10.68 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 
       17.16        12.99         7.89        26.63        13.05         9.17 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
        5.69        28.47         8.28        16.21        11.84        11.57 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 
        8.52        13.58         5.06         6.61         5.23         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 
        3.19         6.61         7.36         5.82         3.68         3.75 
TCGA-CN-6998 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-6219 
        1.51        21.50        38.89        29.46        11.21        15.72 
TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 
       38.14        32.35         4.21        26.76        45.27        33.07 
TCGA-CQ-7067 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 
       16.70        18.51        16.90        12.46        39.12        24.95 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 
       31.96        34.06        26.17        17.13        47.01        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5432 TCGA-CV-5434 
       31.10        29.85         7.10        35.41       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       47.28        19.20        89.82        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 
       17.75        48.59        33.11        43.23        40.96         5.88 
TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
        2.14        26.43        19.79        15.06        30.05         6.08 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 
        7.13         8.38         2.50        18.81        12.66         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7238 TCGA-CV-7243 
       52.31        12.89        71.21        10.75        47.47        31.33 
TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       18.97        11.87         2.10        18.41        58.06        35.54 
TCGA-CV-7414 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7433 TCGA-CV-7438 TCGA-CV-7568 
        0.46        34.09       100.54        19.73         6.38        30.48 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-8568 TCGA-D6-8569 
       10.39        10.55         2.53         5.00         3.45         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7594 
       37.78        34.78        15.68        18.02         9.83        12.10 
TCGA-F7-8298 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 
        0.46         0.16         1.81         1.45         0.99         0.99 
TCGA-IQ-7630 
        5.26 

$subtype2
TCGA-BA-7269 TCGA-BB-4217 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CV-6933 
        7.76         6.12        27.65         4.21        32.35        90.08 
TCGA-CV-6945 TCGA-CV-7235 TCGA-CV-7413 TCGA-CV-7429 TCGA-CV-7440 
       12.03        56.68         9.67         3.48        21.99 

$subtype3
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BB-4223 
        5.00         8.02        14.79         2.07        12.99        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-8601 
       13.87        23.61        20.98        37.87        14.04        20.52 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
        6.31        13.55         4.67         6.38         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 
       12.59        12.13        14.33        11.44        28.77         9.50 
TCGA-CN-5359 TCGA-CN-5361 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6010 
       12.39         6.35        11.54        12.49         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 
        7.50         4.70         1.48         9.07         6.18         1.38 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5326 
        2.73         3.91         3.29        48.16        39.68         2.93 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
       33.80        10.42        28.60        32.88        34.75        13.25 
TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 TCGA-CR-5247 
       14.96        48.03        22.78        29.59        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       34.52        36.99         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.64         7.66        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       47.34        40.90        35.84         3.42         3.06        29.23 
TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
        0.99        19.92        32.78        27.02        12.89        29.82 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         5.13         5.92        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
      135.29        17.16        17.95        87.55        76.47        84.39 
TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6935 TCGA-CV-6936 
       57.07         7.07        13.32        24.43         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 
       20.52         4.70        21.86        11.24       126.08        42.35 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 
       53.92        65.82        10.98        28.31         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 
      126.12       111.12         7.99         9.01         5.23        21.76 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
      114.94         4.73        36.00        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
        4.96        47.97        36.13        17.82       210.94        89.33 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 
       22.85        25.02        25.94         0.07        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 
      156.49        54.90        16.27        84.49         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7446 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       16.60        35.93         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7588 
        8.22         7.82         5.03         4.18        16.96        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-F7-7848 
       18.90        21.73        11.84        12.13        10.65         1.15 
TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 
        0.43         0.99         1.87         0.07         0.82         1.02 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         4.01         3.72 

subtype1 subtype2 subtype3 
    0.16     3.48     0.07 
subtype1 subtype2 subtype3 
  129.21    90.08   210.94 
subtype1 subtype2 subtype3 
   15.68    12.03    14.04 
[1] "0.2 - 129.2 (15.7)" "3.5 - 90.1 (12.0)"  "0.1 - 210.9 (14.0)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[193] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[289] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[313] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype1" "subtype3" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[193] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[289] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[313] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype1" "subtype3" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [43] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [79] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[193] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[229] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[289] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[295] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[301] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[313] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype1" "subtype3" "subtype3"
D8V2, continuous
D8V3, binary
          cls
clus         0   1
  subtype1  39  84
  subtype2   2   9
  subtype3  51 140
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   84
  subtype2    2    9
  subtype3   51  140
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39        2       51
  MALE         84        9      140
          vv
clus       T1 T2 T3 T4
  subtype1 18 33 26 37
  subtype2  0  5  3  3
  subtype3 10 45 36 66
D8V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 38 16 48  1
  subtype2  4  2  4  0
  subtype3 64 18 51  4
D8V5, multiclass
D8V6, binary
          cls
clus        0  1
  subtype1 27  3
  subtype2  0  0
  subtype3 32  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27    3
  subtype2    0    0
  subtype3   32    3
    clus
vv   subtype1 subtype3
  M0       27       32
  MX        3        3
          vv
clus        I II III IV
  subtype1 14 18  16 65
  subtype2  0  4   3  4
  subtype3  6 29  25 93
D8V7, multiclass
D8V8, binary
          cls
clus         0   1
  subtype1  32  91
  subtype2   2   9
  subtype3  43 148
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   91
  subtype2    2    9
  subtype3   43  148
     clus
vv    subtype1 subtype2 subtype3
  NO        32        2       43
  YES       91        9      148
D8V9, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          30
  subtype2                                           2
  subtype3                                          53
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     25             35
  subtype2                                      2              4
  subtype3                                     31             66
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  30
  subtype2                   3
  subtype3                  33
D8V10, multiclass
D8V11, continuous
D8V12, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                           "PATHOLOGY.T" 
                                      V5 
                           "PATHOLOGY.N" 
                                      V6 
                   "PATHOLOGICSPREAD(M)" 
                                      V7 
                           "TUMOR.STAGE" 
                                      V8 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V9 
                 "NUMBERPACKYEARSSMOKED" 
                                     V10 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V11 
             "YEAROFTOBACCOSMOKINGONSET" 
                                     V12 
                 "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
