Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-KL-8323-01A-21D-2308-01	TCGA-KL-8324-01A-11D-2308-01	TCGA-KL-8325-01A-11D-2308-01	TCGA-KL-8326-01A-11D-2308-01	TCGA-KL-8327-01A-11D-2308-01	TCGA-KL-8328-01A-11D-2308-01	TCGA-KL-8329-01A-11D-2308-01	TCGA-KL-8330-01A-11D-2308-01	TCGA-KL-8331-01A-11D-2308-01	TCGA-KL-8332-01A-11D-2308-01	TCGA-KL-8333-01A-11D-2308-01	TCGA-KL-8334-01A-11D-2308-01	TCGA-KL-8335-01A-11D-2308-01	TCGA-KL-8336-01A-11D-2308-01	TCGA-KL-8337-01A-11D-2308-01	TCGA-KL-8338-01A-11D-2308-01	TCGA-KL-8339-01A-11D-2308-01	TCGA-KL-8340-01A-11D-2308-01	TCGA-KL-8341-01A-11D-2308-01	TCGA-KL-8342-01A-11D-2308-01	TCGA-KL-8343-01A-11D-2308-01	TCGA-KL-8344-01A-11D-2308-01	TCGA-KL-8345-01A-11D-2308-01	TCGA-KL-8346-01A-11D-2308-01	TCGA-KM-8438-01A-11D-2308-01	TCGA-KM-8439-01A-11D-2308-01	TCGA-KM-8440-01A-11D-2308-01	TCGA-KM-8441-01A-11D-2308-01	TCGA-KM-8442-01A-11D-2308-01	TCGA-KM-8443-01A-11D-2308-01	TCGA-KM-8476-01A-11D-2308-01	TCGA-KM-8477-01A-11D-2308-01	TCGA-KM-8639-01A-11D-2389-01	TCGA-KN-8418-01A-11D-2308-01	TCGA-KN-8419-01A-11D-2308-01	TCGA-KN-8421-01A-11D-2308-01	TCGA-KN-8422-01A-11D-2308-01	TCGA-KN-8423-01A-11D-2308-01	TCGA-KN-8424-01A-11D-2308-01	TCGA-KN-8425-01A-11D-2308-01	TCGA-KN-8426-01A-11D-2308-01	TCGA-KN-8427-01A-11D-2308-01	TCGA-KN-8428-01A-11D-2308-01	TCGA-KN-8429-01A-11D-2308-01	TCGA-KN-8430-01A-11D-2308-01	TCGA-KN-8431-01A-11D-2308-01	TCGA-KN-8432-01A-11D-2308-01	TCGA-KN-8433-01A-11D-2308-01	TCGA-KN-8434-01A-11D-2308-01	TCGA-KN-8435-01A-11D-2308-01	TCGA-KN-8436-01A-11D-2308-01	TCGA-KN-8437-01A-11D-2308-01	TCGA-KO-8403-01A-11D-2308-01	TCGA-KO-8404-01A-11D-2308-01	TCGA-KO-8405-01A-11D-2308-01	TCGA-KO-8406-01A-11D-2308-01	TCGA-KO-8407-01A-11D-2308-01	TCGA-KO-8408-01A-11D-2308-01	TCGA-KO-8409-01A-11D-2308-01	TCGA-KO-8410-01A-11D-2308-01	TCGA-KO-8411-01A-11D-2308-01	TCGA-KO-8413-01A-11D-2308-01	TCGA-KO-8414-01A-11D-2308-01	TCGA-KO-8415-01A-11D-2308-01	TCGA-KO-8416-01A-11D-2308-01	TCGA-KO-8417-01A-11D-2308-01	
Amplification Peak 1	8q11.23 	chr8:51697150-53706540(probes 774977:776151)	chr8:51697163-53706162(probes 774978:776150)    	chr8:51697163-53711445(probes 774978:776153)    	0.23712	 0.23712		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	1	0	0	2	0	0	2	1	1	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	2	2	0	2	0	0	0	0	
Amplification Peak 2	15q22.31	chr15:1-66482794(probes 1236192:1260210)   	chr15:63792487-63907939(probes 1258879:1258935)	chr15:63792487-63917181(probes 1258879:1258938)	0.23712	 0.23712		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	1	0	0	0	1	0	0	0	0	1	0	0	1	0	2	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	2	0	1	0	2	0	0	1	0	2	0	0	0	0	1	0	0	1	2	0	0	2	2	2	0	0	
Amplification Peak 1 - CN values	8q11.23 	chr8:51697150-53706540(probes 774977:776151)	chr8:51697163-53706162(probes 774978:776150)    	chr8:51697163-53711445(probes 774978:776153)    	0.23712	 0.23712		Actual Copy Change Given	0.0068044	0.22901	0.00406	0.0066653	-0.5718	0.034048	0.011539	0.03214	0.10725	0.015773	0.00015036	0.01447	0.014549	0.041242	-0.8546	0.0036889	0.30346	-0.00055444	2.9564	0.0062481	0.0114	-0.00069303	0.0073609	1.6119	0.4107	0.0029133	0.0054139	0	0.046842	0.49926	-0.80956	0.00097064	0.0043021	-0.013815	0.5962	0.027497	0	1.3769	0	0	3.3861	0.73284	0.62224	0.0069435	1.2588	0.031436	-0.80873	0.23602	0.047268	-0.60584	-0.89901	0.0034687	0.011375	-0.0017681	0.32205	-0.0013858	0.01447	0.079915	1.407	1.2137	-0.89604	1.1419	-0.17639	0.076847	-0.88905	-0.8765	
Amplification Peak 2 - CN values	15q22.31	chr15:1-66482794(probes 1236192:1260210)   	chr15:63792487-63907939(probes 1258879:1258935)	chr15:63792487-63917181(probes 1258879:1258938)	0.23712	 0.23712		Actual Copy Change Given	0.0073609	0.20117	0.045177	0.021744	0.49338	0.014888	0.004719	0.012934	0.11374	0.016332	0.0026357	0.025812	0.042307	0.11404	0.019848	0.0069789	0.15338	0.0041632	2.8209	0.020203	0.057368	0.029888	0.012516	1.5646	0.39678	0.00069327	0.0070826	0.00088297	0.014888	0.49182	0.016565	0.0012481	0.0051359	0.023426	0.63372	-0.22318	0.031436	-0.065045	0.011579	0.46417	1.3922	-0.20336	0.65112	0.019083	1.2641	-0.0085766	0.024408	0.8672	0.062651	0.9007	0.058652	-0.0016629	0.011513	-0.059807	0.31257	0.010006	0.015587	0.14626	1.3543	-0.025072	0.011958	1.2838	1.1632	1.0618	0.019223	0	
