
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.84.4098/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.84.4098/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LGG-TP/3144354/1.GDAC_mergedClustering.Finished/LGG-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LGG-TP/3132679/1.GDAC_clinicalDataPicker.Finished/LGG-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=208, in cluster file=222, common to both=208
[1]   8 208
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
 9 10  8 
 1  2  3 
 9 10  8 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
 9  7 11 
 1  2  3 
 9  7 11 
[1] "CN_CNMF"
[1] 3
 1  2  3 
85 48 74 
 1  2  3 
85 48 74 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
92 31 57 23 
 1  2  3  4 
92 31 57 23 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4  5 
55 40 35 67  9 
 1  2  3  4  5 
55 40 35 67  9 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 32 108  66 
  1   2   3 
 32 108  66 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3  4 
55 32 77 43 
 1  2  3  4 
55 32 77 43 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
  8  89 110 
  1   2   3 
  8  89 110 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "HISTOLOGICCLASSIFICATION"              
[13] "RADIATIONS.RADIATION.REGIMENINDICATION"
[14] "BATCHNUMBER"                           

Input Data has 14 rows and 208 columns.

[1] "Batch" "14"   
[1] "Last Follow UP"
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
         143          234         1335          481          323         1965 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
         857            3          638          289          194          538 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
         725          546          378          257          229          243 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
         224          200         2977         1786         1726         1458 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
        1594         1419         1526         1354          404         1614 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DU-5847 
         607          968          921          438          244          547 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
         442          530           NA          407          257          207 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
        5546          576          531          460         6423         1219 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
         682         1491         2286         1401           NA           37 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        2660          213          354           NA          605          511 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
        2875         3469          242          234           NA           NA 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
        4752         4205           NA           NA           NA           NA 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
          NA         2761           NA          800           NA           NA 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
        2868           NA           NA           NA           NA         1834 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 
          NA         1277           84           NA          121          197 
TCGA-DU-8164 TCGA-DU-8165 TCGA-DU-8166 TCGA-DU-8167 TCGA-DU-8168 TCGA-E1-5302 
         201          184           67           97          107         1525 
TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 
        2051         1251         2432         1762         4084         2378 
TCGA-E1-5319 TCGA-E1-5322 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
        2907         3978          160          787          407          377 
TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 
         979          220          189          142          102          126 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 
         467          124          802          233          283           27 
TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8186 TCGA-FG-8187 TCGA-FG-8188 
         105          100           69          121          215           96 
TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7470 
         199            4            3          146          238          268 
TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
           4            1          503          114          446          199 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
         194           13         2231         1800         1644         4687 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
         121           94          907          705         3283          139 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7616 
         526           NA          671         1399         1706           NA 
TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7687 
         434          494           23          184         1300           NA 
TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 
         964          124            3            3           90          533 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7855 TCGA-HT-7856 TCGA-HT-7857 TCGA-HT-7858 
         210          442          118         1189            7         1540 
TCGA-HT-7860 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7879 TCGA-HT-7880 
          15         1130           10            4           98          162 
TCGA-HT-7881 TCGA-HT-7882 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8011 TCGA-HT-8012 
          89           51          954           50          469          286 
TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8104 TCGA-HT-8105 TCGA-HT-8106 
          NA          654         1004          372          180            3 
TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8113 
          14           76          120          142            7          900 
TCGA-HT-8114 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 
         118          608          409          141          165          854 
TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-7675 TCGA-IK-8125 
         285           13           NA          909 
Variable 1:'AGE':	nDistinctValues=52,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=51,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=165,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=153,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'HISTOLOGICCLASSIFICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'BATCH.NUMBER':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "HISTOLOGICCLASSIFICATION"              
[6] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 208 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=52, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
HISTOLOGICCLASSIFICATION, nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2      0 1
  subtype1 5 4
  subtype2 7 3
  subtype3 6 2
subtype1 subtype2 subtype3 
       9       10        8 
subtype1 subtype2 subtype3 
       4        3        2 
$subtype1
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 
       43.89        15.81        10.62        58.72        13.28        30.28 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       50.14        67.43       130.78 

$subtype2
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DB-5275 TCGA-DH-5140 
       64.60         0.10         9.50        56.75        47.93        19.96 
TCGA-DH-5141 TCGA-DH-5144 TCGA-E1-5304 TCGA-E1-5318 
       31.82         8.02        41.13        78.18 

$subtype3
TCGA-CS-5395 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 
       20.98        97.87        52.41        46.65        50.17        53.06 
TCGA-DH-5143 TCGA-E1-5311 
       14.40       134.27 

subtype1 subtype2 subtype3 
   10.62     0.10    14.40 
subtype1 subtype2 subtype3 
  130.78    78.18   134.27 
subtype1 subtype2 subtype3 
  43.890   36.475   51.290 
[1] "10.6 - 130.8 (43.9)" "0.1 - 78.2 (36.5)"   "14.4 - 134.3 (51.3)"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus       0 1
  subtype1 2 7
  subtype2 6 4
  subtype3 1 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    7
  subtype2    6    4
  subtype3    1    7
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2        6        1
  MALE          7        4        7
D1V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           7                2                 0
  subtype2           2                3                 5
  subtype3           1                4                 3
D1V5, multiclass
D1V6, binary
          cls
clus       0 1
  subtype1 3 6
  subtype2 2 8
  subtype3 2 6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    6
  subtype2    2    8
  subtype3    2    6
           clus
vv          subtype1 subtype2 subtype3
  GRADE II         3        2        2
  GRADE III        6        8        6
D1V7, binary
          cls
clus       0 1
  subtype1 7 2
  subtype2 8 2
  subtype3 4 4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    2
  subtype2    8    2
  subtype3    4    4
     clus
vv    subtype1 subtype2 subtype3
  NO         7        8        4
  YES        2        2        4

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2      0 1
  subtype1 5 4
  subtype2 5 2
  subtype3 8 3
subtype1 subtype2 subtype3 
       9        7       11 
subtype1 subtype2 subtype3 
       4        2        3 
$subtype1
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 
       43.89        15.81        10.62        58.72        13.28        30.28 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       50.14        67.43       130.78 

$subtype2
TCGA-CS-5395 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5281 TCGA-DH-5143 
       20.98        97.87        52.41        50.17        53.06        14.40 
TCGA-E1-5311 
      134.27 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 
       64.60         0.10         9.50        56.75        47.93        46.65 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5144 TCGA-E1-5304 TCGA-E1-5318 
       19.96        31.82         8.02        41.13        78.18 

subtype1 subtype2 subtype3 
   10.62    14.40     0.10 
subtype1 subtype2 subtype3 
  130.78   134.27    78.18 
subtype1 subtype2 subtype3 
   43.89    52.41    41.13 
[1] "10.6 - 130.8 (43.9)" "14.4 - 134.3 (52.4)" "0.1 - 78.2 (41.1)"  
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus       0 1
  subtype1 2 7
  subtype2 1 6
  subtype3 6 5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    7
  subtype2    1    6
  subtype3    6    5
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2        1        6
  MALE          7        6        5
D2V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           7                2                 0
  subtype2           0                4                 3
  subtype3           3                3                 5
D2V5, multiclass
D2V6, binary
          cls
clus       0 1
  subtype1 3 6
  subtype2 2 5
  subtype3 2 9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    6
  subtype2    2    5
  subtype3    2    9
           clus
vv          subtype1 subtype2 subtype3
  GRADE II         3        2        2
  GRADE III        6        5        9
D2V7, binary
          cls
clus       0 1
  subtype1 7 2
  subtype2 4 3
  subtype3 8 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    2
  subtype2    4    3
  subtype3    8    3
     clus
vv    subtype1 subtype2 subtype3
  NO         7        4        8
  YES        2        3        3

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 71 14
  subtype2 24 24
  subtype3 60 13
subtype1 subtype2 subtype3 
      85       48       73 
subtype1 subtype2 subtype3 
      14       24       13 
$subtype1
TCGA-CS-4938 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 
        4.70        15.81        28.18        17.95        12.43         8.45 
TCGA-CS-6667 TCGA-CS-6669 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
        7.53         7.36        58.72        47.93        52.41        46.65 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DH-5143 TCGA-DU-5853 TCGA-DU-5871 TCGA-DU-6396 
       13.28        53.06        14.40        13.38        18.94        75.16 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 
       65.72        87.45       114.05         7.69        62.96       156.23 
TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7019 TCGA-DU-7299 TCGA-DU-7304 TCGA-DU-7309 
      105.21       117.40        26.30        43.99        23.31         2.76 
TCGA-DU-8167 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5307 TCGA-FG-5963 TCGA-FG-5965 
        3.19        50.14        67.43        57.93        13.38        32.19 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-8181 TCGA-FG-8182 TCGA-FG-8185 
        6.21         4.67         3.35         3.45         3.29         2.27 
TCGA-FG-8188 TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7470 TCGA-HT-7473 TCGA-HT-7474 
        3.16         6.54         0.13         8.81        16.54         3.75 
TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 
        6.54         6.38         0.43        54.05       154.09         3.98 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7609 TCGA-HT-7680 
        3.09        29.82        23.18       107.93        45.99         0.76 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 
        6.05        42.74        31.69         4.08         0.10         0.10 
TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7879 TCGA-HT-7880 
       17.52         3.88         0.23        50.63         3.22         5.33 
TCGA-HT-7902 TCGA-HT-8013 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8106 TCGA-HT-8107 
       31.36        63.55        21.50        33.01         0.10         0.46 
TCGA-HT-8111 TCGA-HT-8113 TCGA-HT-8114 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7493 
        0.23        29.59         3.88         4.64         5.42         9.37 
TCGA-IK-7675 
       18.97 

$subtype2
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 
        7.69        43.89        20.98         6.38        17.69        23.84 
TCGA-DB-5270 TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 
       97.87        19.96        17.98         6.74         8.45         6.81 
TCGA-DU-5872 TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       17.46       211.17        49.02         7.00        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-7006 TCGA-DU-7010 TCGA-DU-7012 
       19.89        16.80        94.52        11.47        14.99         6.51 
TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7290 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7301 
        8.84        90.77        10.36         7.96        18.90        25.91 
TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8162 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8166 
       41.98         5.10         3.98         6.48         6.05         2.20 
TCGA-E1-5304 TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 TCGA-HT-7475 TCGA-HT-7606 
       41.13         7.23         4.14         0.89        14.66        17.29 
TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8108 TCGA-HT-8110 
        0.49         1.68        15.42        12.23         2.50         4.67 

$subtype3
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 
       10.62        64.60         0.10         9.50         7.99         6.58 
TCGA-DB-5274 TCGA-DB-5278 TCGA-DB-5279 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5144 
       56.75        50.17        44.52        31.82        30.28         8.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
       14.53        17.42       182.33        15.12        40.08        22.42 
TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7018 TCGA-DU-7294 
       46.06         1.22         7.96       138.25        30.67        94.29 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8164 TCGA-DU-8168 TCGA-E1-5305 TCGA-E1-5311 
       62.01        60.30         6.61         3.52        79.96       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5964 
       78.18        95.57       130.78         5.26        25.87        12.39 
TCGA-FG-7634 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8186 TCGA-FG-8187 
       15.35         4.08         7.66         9.30         3.98         7.07 
TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7469 TCGA-HT-7471 TCGA-HT-7472 TCGA-HT-7480 
        0.10         4.80         7.82         0.13         0.03        73.35 
TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7616 
       59.18         4.57         3.16        22.06        56.09         0.23 
TCGA-HT-7620 TCGA-HT-7677 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 
       14.27        16.24         2.96         6.90        14.53        39.09 
TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8012 
       37.15         0.33         0.13         2.93         1.64         9.40 
TCGA-HT-8105 TCGA-HT-8109 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 
        5.92         3.95        19.99        13.45        28.08         0.43 
TCGA-IK-8125 
       29.88 

subtype1 subtype2 subtype3 
    0.10     0.49     0.03 
subtype1 subtype2 subtype3 
  156.23   211.17   182.33 
subtype1 subtype2 subtype3 
  13.380   11.935   14.270 
[1] "0.1 - 156.2 (13.4)" "0.5 - 211.2 (11.9)" "0.0 - 182.3 (14.3)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 28 57
  subtype2 31 17
  subtype3 30 44
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   57
  subtype2   31   17
  subtype3   30   44
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       28       31       30
  MALE         57       17       44
D3V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          33               30                21
  subtype2          24               15                 9
  subtype3           6                9                59
D3V5, multiclass
D3V6, binary
          cls
clus        0  1
  subtype1 44 40
  subtype2 11 37
  subtype3 39 35
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   44   40
  subtype2   11   37
  subtype3   39   35
           clus
vv          subtype1 subtype2 subtype3
  GRADE II        44       11       39
  GRADE III       40       37       35
D3V7, binary
          cls
clus        0  1
  subtype1 46 39
  subtype2 29 19
  subtype3 29 45
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46   39
  subtype2   29   19
  subtype3   29   45
     clus
vv    subtype1 subtype2 subtype3
  NO        46       29       29
  YES       39       19       45

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 70 22
  subtype2 15 16
  subtype3 48  8
  subtype4 22  1
subtype1 subtype2 subtype3 subtype4 
      92       31       56       23 
subtype1 subtype2 subtype3 subtype4 
      22       16        8        1 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5393 TCGA-CS-6290 
        4.70        43.89        15.81        10.62        28.18        17.95 
TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 
       12.43         8.45         7.53        58.72        47.93        46.65 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5851 TCGA-DU-5853 
       13.28        53.06        30.28        14.40        17.42        13.38 
TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 
        6.81        18.94        17.46        49.02        75.16        65.72 
TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 
       87.45        94.52       114.05         7.69        62.96       156.23 
TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7298 TCGA-DU-7299 
       14.99       117.40        90.77        26.30        18.90        43.99 
TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-DU-8163 TCGA-DU-8166 
       25.91        23.31        41.98         2.76         6.48         2.20 
TCGA-DU-8167 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5307 
        3.19        50.14        67.43        41.13        79.96        57.93 
TCGA-E1-5322 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7636 
      130.78        32.19         6.21         4.67         3.35         4.08 
TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7470 
        3.29         2.27         3.16         6.54         0.13         8.81 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 
        0.03        16.54         3.75        14.66         6.54         6.38 
TCGA-HT-7482 TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7603 TCGA-HT-7604 
       54.05       154.09         3.98         3.09        23.18       107.93 
TCGA-HT-7606 TCGA-HT-7609 TCGA-HT-7610 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7688 
       17.29        45.99        56.09         6.05        42.74        31.69 
TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7858 TCGA-HT-7879 
        4.08         0.10        17.52         3.88        50.63         3.22 
TCGA-HT-8013 TCGA-HT-8108 TCGA-HT-8111 TCGA-HT-8114 TCGA-HW-7489 TCGA-HW-7490 
       63.55         2.50         0.23         3.88         4.64         5.42 
TCGA-HW-7493 TCGA-IK-7675 
        9.37        18.97 

$subtype2
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DH-5140 
        7.69        20.98         6.38        17.69        23.84        19.96 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6403 TCGA-DU-6404 
       17.98         6.74         8.45       211.17        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 
       19.89        16.80        11.47         6.51         8.84        10.36 
TCGA-DU-7292 TCGA-DU-8158 TCGA-DU-8165 TCGA-FG-6688 TCGA-FG-6692 TCGA-HT-7469 
        7.96         5.10         6.05         7.23         4.14         7.82 
TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8106 
        0.23         0.49         1.68        15.42        12.23         0.10 
TCGA-HT-8110 
        4.67 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.60         0.10         9.50         7.99         6.58        56.75 
TCGA-DB-5279 TCGA-DH-5141 TCGA-DH-5144 TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 
       44.52        31.82         8.02        14.53       182.33        15.12 
TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7018 TCGA-DU-7294 
       40.08         1.22         7.96       138.25        30.67        94.29 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-8164 TCGA-DU-8168 TCGA-E1-5311 TCGA-E1-5318 
       62.01        60.30         6.61         3.52       134.27        78.18 
TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7637 
       95.57         5.26        25.87        12.39        15.35        26.37 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-8186 TCGA-FG-8187 TCGA-HT-7467 TCGA-HT-7468 
        7.66         9.30         3.98         7.07         0.10         4.80 
TCGA-HT-7471 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 TCGA-HT-7616 TCGA-HT-7620 
        0.13        73.35        59.18         4.57         0.23        14.27 
TCGA-HT-7677 TCGA-HT-7692 TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7875 TCGA-HT-7877 
       16.24         2.96         6.90        14.53         0.33         0.13 
TCGA-HT-8012 TCGA-HT-8105 TCGA-HT-8109 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 
        9.40         5.92         3.95        19.99        13.45        28.08 
TCGA-HW-7495 TCGA-IK-8125 
        0.43        29.88 

$subtype4
TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 TCGA-DU-8162 TCGA-FG-5963 
        7.36        97.87        52.41        50.17         3.98        13.38 
TCGA-FG-7643 TCGA-FG-8181 TCGA-HT-7479 TCGA-HT-7602 TCGA-HT-7607 TCGA-HT-7680 
        0.89         3.45         0.43        29.82         3.16         0.76 
TCGA-HT-7691 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 
        0.10        39.09        37.15         5.33         2.93        31.36 
TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8107 TCGA-HT-8113 
        1.64        21.50        33.01         0.46        29.59 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.10     0.10 
subtype1 subtype2 subtype3 subtype4 
  156.23   211.17   182.33    97.87 
subtype1 subtype2 subtype3 subtype4 
  17.355    8.450   12.920    7.360 
[1] "0.0 - 156.2 (17.4)" "0.1 - 211.2 (8.4)"  "0.1 - 182.3 (12.9)"
[4] "0.1 - 97.9 (7.4)"  
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype1"
[169] "subtype2" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype4" "subtype2" "subtype3"
[181] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
[187] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype1"
[169] "subtype2" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype4" "subtype2" "subtype3"
[181] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
[187] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [25] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype3" "subtype4" "subtype1" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype1"
[169] "subtype2" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[175] "subtype4" "subtype2" "subtype4" "subtype4" "subtype2" "subtype3"
[181] "subtype1" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
[187] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[199] "subtype1" "subtype3" "subtype1" "subtype3"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 33 59
  subtype2 19 12
  subtype3 24 33
  subtype4 13 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   59
  subtype2   19   12
  subtype3   24   33
  subtype4   13   10
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       33       19       24       13
  MALE         59       12       33       10
D4V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          36               34                21
  subtype2          20                5                 6
  subtype3           1                6                50
  subtype4           5                8                10
D4V5, multiclass
D4V6, binary
          cls
clus        0  1
  subtype1 47 44
  subtype2  1 30
  subtype3 31 26
  subtype4 14  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   47   44
  subtype2    1   30
  subtype3   31   26
  subtype4   14    9
           clus
vv          subtype1 subtype2 subtype3 subtype4
  GRADE II        47        1       31       14
  GRADE III       44       30       26        9
D4V7, binary
          cls
clus        0  1
  subtype1 61 31
  subtype2 16 15
  subtype3 18 39
  subtype4  6 17
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   61   31
  subtype2   16   15
  subtype3   18   39
  subtype4    6   17
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        61       16       18        6
  YES       31       15       39       17

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 41 14
  subtype2 20 20
  subtype3 26  8
  subtype4 59  8
  subtype5  8  1
subtype1 subtype2 subtype3 subtype4 subtype5 
      55       40       34       67        9 
subtype1 subtype2 subtype3 subtype4 subtype5 
      14       20        8        8        1 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-6290 TCGA-CS-6666 
        4.70        43.89        15.81        10.62        17.95         8.45 
TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 TCGA-DU-5855 TCGA-DU-5871 
        7.53        58.72        13.28        30.28         6.81        18.94 
TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6408 
       17.46        49.02        65.72        87.45        94.52       114.05 
TCGA-DU-7011 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8163 
      105.21       117.40        90.77        25.91        41.98         6.48 
TCGA-DU-8166 TCGA-DU-8167 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 TCGA-FG-5965 
        2.20         3.19        50.14        67.43       130.78        32.19 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-7636 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8188 
        4.67         3.35         4.08         3.29         2.27         3.16 
TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7482 
        6.54         0.13         0.03        16.54         6.38        54.05 
TCGA-HT-7485 TCGA-HT-7604 TCGA-HT-7609 TCGA-HT-7684 TCGA-HT-7693 TCGA-HT-7855 
        3.98       107.93        45.99         6.05        17.52         3.88 
TCGA-HT-7858 TCGA-HT-7879 TCGA-HT-8013 TCGA-HT-8108 TCGA-HT-8114 TCGA-HW-7490 
       50.63         3.22        63.55         2.50         3.88         5.42 
TCGA-IK-7675 
       18.97 

$subtype2
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6665 TCGA-DH-5140 
        7.69        20.98         6.38        17.69        12.43        19.96 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6396 TCGA-DU-6402 
       17.98         6.74         8.45       211.17        75.16         7.00 
TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7007 
       11.64       133.74        19.89        16.80        11.47        62.96 
TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 TCGA-DU-8158 TCGA-DU-8165 
       14.99         6.51         8.84        10.36         5.10         6.05 
TCGA-E1-5304 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6692 TCGA-HT-7469 TCGA-HT-7601 
       41.13        13.38         7.23         4.14         7.82         3.09 
TCGA-HT-7680 TCGA-HT-7686 TCGA-HT-7691 TCGA-HT-7857 TCGA-HT-7860 TCGA-HT-7882 
        0.76        42.74         0.10         0.23         0.49         1.68 
TCGA-HT-8011 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8110 
       15.42        12.23         0.10         4.67 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DB-5275 
       64.60         0.10         9.50         7.99        56.75        47.93 
TCGA-DH-5141 TCGA-DH-5144 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 
       31.82         8.02       182.33        15.12        40.08        22.42 
TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-8168 
       46.06         1.22         7.96        30.67        94.29         3.52 
TCGA-E1-5318 TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-8186 
       78.18        95.57         5.26        15.35        26.37         3.98 
TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7481 TCGA-HT-7606 TCGA-HT-7616 TCGA-HT-7677 
        4.80         0.13        59.18        17.29         0.23        16.24 
TCGA-HT-7692 TCGA-HT-8012 TCGA-HT-8105 TCGA-HW-7491 
        2.96         9.40         5.92        28.08 

$subtype4
TCGA-CS-5393 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5277 
       28.18         7.36         6.58        97.87        52.41        46.65 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DH-5143 TCGA-DU-5849 TCGA-DU-5851 
       50.17        44.52        53.06        14.40        14.53        17.42 
TCGA-DU-6542 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7019 TCGA-DU-7292 TCGA-DU-7298 
        7.69       156.23       138.25        26.30         7.96        18.90 
TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 
       62.01        60.30        23.31         2.76         3.98         6.61 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6689 
       79.96        57.93       134.27        25.87        12.39         6.21 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-HT-7467 TCGA-HT-7470 
        7.66         9.30         0.89         3.45         0.10         8.81 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7483 TCGA-HT-7603 
        3.75        14.66         6.54        73.35       154.09        23.18 
TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7690 
        4.57         3.16        22.06        56.09        31.69         0.10 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        6.90        14.53        39.09        37.15         0.33         0.13 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8107 
        5.33         2.93         1.64        21.50        33.01         0.46 
TCGA-HT-8109 TCGA-HT-8113 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 
        3.95        29.59        13.45         4.64         9.37         0.43 
TCGA-IK-8125 
       29.88 

$subtype5
TCGA-DU-7299 TCGA-FG-8187 TCGA-HT-7479 TCGA-HT-7602 TCGA-HT-7620 TCGA-HT-7689 
       43.99         7.07         0.43        29.82        14.27         4.08 
TCGA-HT-7902 TCGA-HT-8111 TCGA-HW-7486 
       31.36         0.23        19.99 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.03     0.10     0.10     0.10     0.23 
subtype1 subtype2 subtype3 subtype4 subtype5 
  130.78   211.17   182.33   156.23    43.99 
subtype1 subtype2 subtype3 subtype4 subtype5 
  16.540    9.600   15.795   14.530   14.270 
[1] "0.0 - 130.8 (16.5)" "0.1 - 211.2 (9.6)"  "0.1 - 182.3 (15.8)"
[4] "0.1 - 156.2 (14.5)" "0.2 - 44.0 (14.3)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
 [31] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [73] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
 [79] "subtype5" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
 [85] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [97] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[109] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[121] "subtype1" "subtype3" "subtype5" "subtype1" "subtype1" "subtype1"
[127] "subtype4" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[133] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype5"
[139] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype2"
[145] "subtype5" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[151] "subtype4" "subtype1" "subtype4" "subtype3" "subtype5" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype4" "subtype5" "subtype4"
[163] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[169] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[175] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype5"
[181] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
[193] "subtype2" "subtype5" "subtype4" "subtype1" "subtype5" "subtype4"
[199] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[205] "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
 [31] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [73] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
 [79] "subtype5" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
 [85] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [97] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[109] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[121] "subtype1" "subtype3" "subtype5" "subtype1" "subtype1" "subtype1"
[127] "subtype4" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[133] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype5"
[139] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype2"
[145] "subtype5" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[151] "subtype4" "subtype1" "subtype4" "subtype3" "subtype5" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype4" "subtype5" "subtype4"
[163] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[169] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[175] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype5"
[181] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
[193] "subtype2" "subtype5" "subtype4" "subtype1" "subtype5" "subtype4"
[199] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[205] "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
  [7] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
 [25] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
 [31] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [61] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
 [67] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [73] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype4"
 [79] "subtype5" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
 [85] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [97] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[109] "subtype4" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[121] "subtype1" "subtype3" "subtype5" "subtype1" "subtype1" "subtype1"
[127] "subtype4" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[133] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype5"
[139] "subtype4" "subtype3" "subtype1" "subtype4" "subtype1" "subtype2"
[145] "subtype5" "subtype4" "subtype1" "subtype4" "subtype3" "subtype4"
[151] "subtype4" "subtype1" "subtype4" "subtype3" "subtype5" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype4" "subtype5" "subtype4"
[163] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[169] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[175] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype5"
[181] "subtype4" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
[193] "subtype2" "subtype5" "subtype4" "subtype1" "subtype5" "subtype4"
[199] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[205] "subtype4"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 19 36
  subtype2 26 14
  subtype3 18 17
  subtype4 24 43
  subtype5  2  7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   36
  subtype2   26   14
  subtype3   18   17
  subtype4   24   43
  subtype5    2    7
D5V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          20               20                15
  subtype2          28                6                 6
  subtype3           2                5                28
  subtype4          10               20                36
  subtype5           2                3                 4
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1 35 20
  subtype2  4 36
  subtype3 16 19
  subtype4 34 32
  subtype5  5  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   20
  subtype2    4   36
  subtype3   16   19
  subtype4   34   32
  subtype5    5    4
D5V7, binary
          cls
clus        0  1
  subtype1 35 20
  subtype2 22 18
  subtype3 12 23
  subtype4 30 37
  subtype5  3  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   20
  subtype2   22   18
  subtype3   12   23
  subtype4   30   37
  subtype5    3    6

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 23  8
  subtype2 75 33
  subtype3 56 10
subtype1 subtype2 subtype3 
      31      108       66 
subtype1 subtype2 subtype3 
       8       33       10 
$subtype1
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 TCGA-DH-5141 
       64.60         0.10         9.50         7.99        56.75        31.82 
TCGA-DH-5144 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 
        8.02       182.33        15.12        40.08        22.42        46.06 
TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-8168 TCGA-E1-5318 
        1.22         7.96        30.67        94.29         3.52        78.18 
TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-8186 TCGA-HT-7468 
       95.57         5.26        15.35        26.37         3.98         4.80 
TCGA-HT-7471 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7692 TCGA-HT-8012 TCGA-HT-8105 
        0.13         0.23        16.24         2.96         9.40         5.92 
TCGA-HW-7491 
       28.08 

$subtype2
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5395 
        4.70         7.69        43.89        15.81        10.62        20.98 
TCGA-CS-6186 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5273 
       17.69        17.95        12.43         8.45         7.53        58.72 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 TCGA-DH-5140 TCGA-DH-5142 TCGA-DU-5847 
       47.93        46.65        13.28        19.96        30.28        17.98 
TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6392 
        6.74         8.45         6.81        18.94        17.46       211.17 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 
       49.02        75.16        65.72        87.45         7.00        11.64 
TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 
      133.74        19.89        16.80        94.52       114.05         7.69 
TCGA-DU-7006 TCGA-DU-7007 TCGA-DU-7010 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 
       11.47        62.96        14.99         6.51         8.84       117.40 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7306 
       90.77        26.30        10.36        43.99        25.91        41.98 
TCGA-DU-8158 TCGA-DU-8163 TCGA-DU-8165 TCGA-DU-8167 TCGA-E1-5302 TCGA-E1-5303 
        5.10         6.48         6.05         3.19        50.14        67.43 
TCGA-E1-5304 TCGA-E1-5322 TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6690 
       41.13       130.78        13.38        32.19         7.23         4.67 
TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7636 TCGA-FG-8182 TCGA-FG-8185 TCGA-FG-8187 
        3.35         4.14         4.08         3.29         2.27         7.07 
TCGA-FG-8188 TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7469 TCGA-HT-7472 TCGA-HT-7473 
        3.16         6.54         0.13         7.82         0.03        16.54 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 
        6.38         0.43        54.05         3.98         3.09        29.82 
TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7620 TCGA-HT-7680 
      107.93        17.29        22.06        45.99        14.27         0.76 
TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7689 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 
        6.05        42.74         4.08         0.10         0.10        17.52 
TCGA-HT-7855 TCGA-HT-7857 TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7879 TCGA-HT-7882 
        3.88         0.23        50.63         0.49         3.22         1.68 
TCGA-HT-7902 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8108 
       31.36        15.42        63.55        12.23         0.10         2.50 
TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HW-7486 TCGA-HW-7490 TCGA-IK-7675 
        4.67         0.23         3.88        19.99         5.42        18.97 

$subtype3
TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5276 
       28.18         6.38         7.36         6.58        97.87        52.41 
TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5281 TCGA-DH-5143 TCGA-DU-5849 TCGA-DU-5851 
       50.17        44.52        53.06        14.40        14.53        17.42 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7011 TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7300 
      156.23       138.25       105.21         7.96        18.90        62.01 
TCGA-DU-7302 TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 
       60.30        23.31         2.76         3.98         6.61         2.20 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6689 
       79.96        57.93       134.27        25.87        12.39         6.21 
TCGA-FG-7638 TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-HT-7467 TCGA-HT-7470 
        7.66         9.30         0.89         3.45         0.10         8.81 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 
        3.75        14.66         6.54        73.35        59.18       154.09 
TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7694 
       23.18         4.57         3.16        56.09        31.69         6.90 
TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 
       14.53        39.09        37.15         0.33         0.13         5.33 
TCGA-HT-7881 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 TCGA-HT-8107 TCGA-HT-8109 
        2.93         1.64        21.50        33.01         0.46         3.95 
TCGA-HT-8113 TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-8125 
       29.59        13.45         4.64         9.37         0.43        29.88 

subtype1 subtype2 subtype3 
    0.10     0.03     0.10 
subtype1 subtype2 subtype3 
  182.33   211.17   156.23 
subtype1 subtype2 subtype3 
  15.120   12.855   14.465 
[1] "0.1 - 182.3 (15.1)" "0.0 - 211.2 (12.9)" "0.1 - 156.2 (14.5)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[205] "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[205] "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[205] "subtype3"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 17 15
  subtype2 46 62
  subtype3 26 40
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   15
  subtype2   46   62
  subtype3   26   40
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       17       46       26
  MALE         15       62       40
D6V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           1                4                27
  subtype2          51               31                25
  subtype3          10               19                37
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1 14 18
  subtype2 44 63
  subtype3 36 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   18
  subtype2   44   63
  subtype3   36   30
           clus
vv          subtype1 subtype2 subtype3
  GRADE II        14       44       36
  GRADE III       18       63       30
D6V7, binary
          cls
clus        0  1
  subtype1 10 22
  subtype2 62 46
  subtype3 30 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   22
  subtype2   62   46
  subtype3   30   36
     clus
vv    subtype1 subtype2 subtype3
  NO        10       62       30
  YES       22       46       36

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 41 14
  subtype2 26  6
  subtype3 63 13
  subtype4 26 17
subtype1 subtype2 subtype3 subtype4 
      55       32       76       43 
subtype1 subtype2 subtype3 subtype4 
      14        6       13       17 
$subtype1
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4944 TCGA-CS-5395 TCGA-CS-6186 
        4.70         7.69        43.89        10.62        20.98        17.69 
TCGA-CS-6290 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5276 TCGA-DU-5847 TCGA-DU-5854 
       17.95         8.45         7.53        52.41        17.98         8.45 
TCGA-DU-5855 TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6542 TCGA-DU-7012 
        6.81        17.46        75.16        46.06         7.69         6.51 
TCGA-DU-7014 TCGA-DU-7290 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8165 
      117.40        10.36        25.91        41.98         5.10         6.05 
TCGA-E1-5319 TCGA-FG-6688 TCGA-FG-6691 TCGA-FG-7634 TCGA-FG-8182 TCGA-FG-8188 
       95.57         7.23         3.35        15.35         3.29         3.16 
TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7479 TCGA-HT-7482 
        6.54         0.13         0.03        16.54         0.43        54.05 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 
        3.98         3.09        29.82       107.93        17.29        22.06 
TCGA-HT-7609 TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7689 TCGA-HT-7855 
       45.99         0.23        16.24         0.76         4.08         3.88 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-8011 TCGA-HT-8013 TCGA-HT-8110 TCGA-HT-8111 
       50.63         0.49        15.42        63.55         4.67         0.23 
TCGA-HW-7490 
        5.42 

$subtype2
TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-DB-5274 
       15.81        64.60         0.10         9.50         7.99        56.75 
TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5144 
       47.93        46.65        13.28        19.96        31.82         8.02 
TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6394 TCGA-DU-7008 TCGA-DU-7015 TCGA-DU-7018 
      182.33        15.12        22.42       156.23        90.77        30.67 
TCGA-DU-7294 TCGA-DU-8168 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5322 TCGA-EZ-7264 
       94.29         3.52       134.27        78.18       130.78         5.26 
TCGA-FG-6690 TCGA-FG-7637 TCGA-HT-7468 TCGA-HT-7471 TCGA-HT-7692 TCGA-HT-8012 
        4.67        26.37         4.80         0.13         2.96         9.40 
TCGA-HT-8108 TCGA-HW-7491 
        2.50        28.08 

$subtype3
TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5278 
       28.18         6.38         7.36         6.58        97.87        50.17 
TCGA-DB-5279 TCGA-DB-5281 TCGA-DH-5143 TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 
       44.52        53.06        14.40        14.53        17.42        13.38 
TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7019 
       40.08         1.22        11.64       138.25        14.99        26.30 
TCGA-DU-7292 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 TCGA-DU-7304 
        7.96        18.90        43.99        62.01        60.30        23.31 
TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 TCGA-E1-5305 
        2.76         3.98         6.61         2.20         3.19        79.96 
TCGA-E1-5307 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 
       57.93        25.87        12.39         6.21         4.08         7.66 
TCGA-FG-7641 TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8186 TCGA-FG-8187 TCGA-HT-7467 
        9.30         0.89         3.45         3.98         7.07         0.10 
TCGA-HT-7470 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 
        8.81         3.75        14.66         6.54        73.35        59.18 
TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7620 TCGA-HT-7688 
       23.18         4.57         3.16        56.09        14.27        31.69 
TCGA-HT-7694 TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 
        6.90        14.53        39.09        37.15         0.33         0.13 
TCGA-HT-7880 TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8018 TCGA-HT-8019 
        5.33         2.93        31.36         1.64        21.50        33.01 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8109 TCGA-HT-8113 TCGA-HW-7486 TCGA-HW-7487 
        5.92         0.46         3.95        29.59        19.99        13.45 
TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-8125 
        4.64         9.37         0.43        29.88 

$subtype4
TCGA-CS-6188 TCGA-CS-6665 TCGA-DB-5273 TCGA-DH-5142 TCGA-DU-5852 TCGA-DU-5871 
       23.84        12.43        58.72        30.28         6.74        18.94 
TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6404 
      211.17        49.02        65.72        87.45         7.00       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-7006 
       19.89        16.80        94.52       114.05         7.96        11.47 
TCGA-DU-7007 TCGA-DU-7013 TCGA-DU-8163 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
       62.96         8.84         6.48        50.14        67.43        41.13 
TCGA-FG-5963 TCGA-FG-5965 TCGA-FG-6692 TCGA-FG-8185 TCGA-HT-7469 TCGA-HT-7478 
       13.38        32.19         4.14         2.27         7.82         6.38 
TCGA-HT-7483 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7693 
      154.09         6.05        42.74         0.10         0.10        17.52 
TCGA-HT-7857 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8114 
        0.23         3.22         1.68        12.23         0.10         3.88 
TCGA-IK-7675 
       18.97 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.10     0.10 
subtype1 subtype2 subtype3 subtype4 
  117.40   182.33   138.25   211.17 
subtype1 subtype2 subtype3 subtype4 
   8.450   21.190   12.885   16.800 
[1] "0.0 - 117.4 (8.4)"  "0.1 - 182.3 (21.2)" "0.1 - 138.2 (12.9)"
[4] "0.1 - 211.2 (16.8)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [13] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype2" "subtype2" "subtype4" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [49] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [97] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype2" "subtype4" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[163] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype2"
[193] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype4" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [13] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype2" "subtype2" "subtype4" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [49] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [97] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype2" "subtype4" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[163] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype2"
[193] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype4" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [13] "subtype4" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype2" "subtype2" "subtype4" "subtype3" "subtype2" "subtype1"
 [37] "subtype3" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
 [49] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
 [55] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
 [97] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype2" "subtype4" "subtype3" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[163] "subtype4" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
[169] "subtype1" "subtype3" "subtype4" "subtype1" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype2"
[193] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype4" "subtype3"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 22 33
  subtype2 19 13
  subtype3 31 46
  subtype4 17 26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   33
  subtype2   19   13
  subtype3   31   46
  subtype4   17   26
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       22       19       31       17
  MALE         33       13       46       26
D7V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1          26               13                15
  subtype2           3                7                22
  subtype3          13               23                41
  subtype4          21               11                11
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 26 28
  subtype2 17 15
  subtype3 39 38
  subtype4 12 31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26   28
  subtype2   17   15
  subtype3   39   38
  subtype4   12   31
           clus
vv          subtype1 subtype2 subtype3 subtype4
  GRADE II        26       17       39       12
  GRADE III       28       15       38       31
D7V7, binary
          cls
clus        0  1
  subtype1 27 28
  subtype2 12 20
  subtype3 36 41
  subtype4 28 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27   28
  subtype2   12   20
  subtype3   36   41
  subtype4   28   15
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        27       12       36       28
  YES       28       20       41       15

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1  7  1
  subtype2 75 13
  subtype3 74 36
subtype1 subtype2 subtype3 
       8       88      110 
subtype1 subtype2 subtype3 
       1       13       36 
$subtype1
TCGA-DB-5276 TCGA-DU-5854 TCGA-DU-7010 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-8187 
       52.41         8.45        14.99        13.38         7.23         7.07 
TCGA-HT-7620 TCGA-HW-7486 
       14.27        19.99 

$subtype2
TCGA-CS-5393 TCGA-CS-5397 TCGA-CS-6665 TCGA-CS-6668 TCGA-CS-6669 TCGA-CS-6670 
       28.18         6.38        12.43         7.99         7.36         6.58 
TCGA-DB-5270 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 TCGA-DH-5143 TCGA-DH-5144 
       97.87        46.65        50.17        53.06        14.40         8.02 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
       14.53        17.42        13.38        15.12       211.17        40.08 
TCGA-DU-6394 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7019 
       22.42         1.22         7.96       156.23       138.25        26.30 
TCGA-DU-7292 TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7302 
        7.96        94.29        18.90        43.99        62.01        60.30 
TCGA-DU-7304 TCGA-DU-7309 TCGA-DU-8162 TCGA-DU-8164 TCGA-DU-8166 TCGA-DU-8167 
       23.31         2.76         3.98         6.61         2.20         3.19 
TCGA-DU-8168 TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-EZ-7264 TCGA-FG-5962 
        3.52        79.96        57.93       134.27         5.26        25.87 
TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-7636 TCGA-FG-7638 TCGA-FG-7641 
       12.39        32.19         6.21         4.08         7.66         9.30 
TCGA-FG-7643 TCGA-FG-8181 TCGA-FG-8186 TCGA-HT-7467 TCGA-HT-7470 TCGA-HT-7471 
        0.89         3.45         3.98         0.10         8.81         0.13 
TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7483 
        3.75        14.66         6.54        73.35        59.18       154.09 
TCGA-HT-7603 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7610 TCGA-HT-7688 TCGA-HT-7694 
       23.18         4.57         3.16        56.09        31.69         6.90 
TCGA-HT-7695 TCGA-HT-7856 TCGA-HT-7874 TCGA-HT-7875 TCGA-HT-7877 TCGA-HT-7880 
       14.53        39.09        37.15         0.33         0.13         5.33 
TCGA-HT-7881 TCGA-HT-7902 TCGA-HT-8010 TCGA-HT-8012 TCGA-HT-8018 TCGA-HT-8019 
        2.93        31.36         1.64         9.40        21.50        33.01 
TCGA-HT-8105 TCGA-HT-8107 TCGA-HT-8108 TCGA-HT-8109 TCGA-HT-8113 TCGA-HW-7487 
        5.92         0.46         2.50         3.95        29.59        13.45 
TCGA-HW-7489 TCGA-HW-7493 TCGA-HW-7495 TCGA-IK-8125 
        4.64         9.37         0.43        29.88 

$subtype3
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
        4.70         7.69        43.89        15.81        10.62        64.60 
TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6290 
        0.10        20.98         9.50        17.69        23.84        17.95 
TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5279 
        8.45         7.53        58.72        56.75        47.93        44.52 
TCGA-DB-5280 TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DU-5847 TCGA-DU-5852 
       13.28        19.96        31.82        30.28        17.98         6.74 
TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 
        6.81       182.33        18.94        17.46        49.02        75.16 
TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
       46.06        65.72        87.45         7.00        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7006 
       19.89        16.80        94.52       114.05         7.69        11.47 
TCGA-DU-7007 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 
       62.96         6.51         8.84       117.40        90.77        30.67 
TCGA-DU-7290 TCGA-DU-7301 TCGA-DU-7306 TCGA-DU-8158 TCGA-DU-8163 TCGA-DU-8165 
       10.36        25.91        41.98         5.10         6.48         6.05 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
       50.14        67.43        41.13        78.18        95.57       130.78 
TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-8182 
        4.67         3.35         4.14        15.35        26.37         3.29 
TCGA-FG-8185 TCGA-FG-8188 TCGA-FG-8191 TCGA-FN-7833 TCGA-HT-7468 TCGA-HT-7469 
        2.27         3.16         6.54         0.13         4.80         7.82 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7482 TCGA-HT-7485 
        0.03        16.54         6.38         0.43        54.05         3.98 
TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7608 TCGA-HT-7609 
        3.09        29.82       107.93        17.29        22.06        45.99 
TCGA-HT-7616 TCGA-HT-7677 TCGA-HT-7680 TCGA-HT-7684 TCGA-HT-7686 TCGA-HT-7689 
        0.23        16.24         0.76         6.05        42.74         4.08 
TCGA-HT-7690 TCGA-HT-7691 TCGA-HT-7692 TCGA-HT-7693 TCGA-HT-7855 TCGA-HT-7857 
        0.10         0.10         2.96        17.52         3.88         0.23 
TCGA-HT-7858 TCGA-HT-7860 TCGA-HT-7879 TCGA-HT-7882 TCGA-HT-8011 TCGA-HT-8013 
       50.63         0.49         3.22         1.68        15.42        63.55 
TCGA-HT-8104 TCGA-HT-8106 TCGA-HT-8110 TCGA-HT-8111 TCGA-HT-8114 TCGA-HW-7490 
       12.23         0.10         4.67         0.23         3.88         5.42 
TCGA-HW-7491 TCGA-IK-7675 
       28.08        18.97 

subtype1 subtype2 subtype3 
    7.07     0.10     0.03 
subtype1 subtype2 subtype3 
   52.41   211.17   182.33 
subtype1 subtype2 subtype3 
  13.825   12.410   15.615 
[1] "7.1 - 52.4 (13.8)"  "0.1 - 211.2 (12.4)" "0.0 - 182.3 (15.6)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1  3  5
  subtype2 42 47
  subtype3 44 66
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    5
  subtype2   42   47
  subtype3   44   66
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        3       42       44
  MALE          5       47       66
D8V4, continuous
          vv
clus       ASTROCYTOMA OLIGOASTROCYTOMA OLIGODENDROGLIOMA
  subtype1           4                2                 2
  subtype2          15               23                51
  subtype3          44               29                36
D8V5, multiclass
D8V6, binary
          cls
clus        0  1
  subtype1  2  6
  subtype2 45 44
  subtype3 47 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    6
  subtype2   45   44
  subtype3   47   62
           clus
vv          subtype1 subtype2 subtype3
  GRADE II         2       45       47
  GRADE III        6       44       62
D8V7, binary
          cls
clus        0  1
  subtype1  6  2
  subtype2 37 52
  subtype3 60 50
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6    2
  subtype2   37   52
  subtype3   60   50
     clus
vv    subtype1 subtype2 subtype3
  NO         6       37       60
  YES        2       52       50
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
              "HISTOLOGICCLASSIFICATION" 
                                      V7 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
