
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Cluster_cnvarms_onlysig/broadinstitute.org/cancer.genome.analysis/00508/6/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Cluster_cnvarms_onlysig/broadinstitute.org/cancer.genome.analysis/00508/6/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/LUSC-TP/3142932/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUSC-TP/3145458/1.GDAC_mergedClustering.Finished/LUSC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=399, in cluster file=397, common to both=397
[1]  80 397
[1] "1p gain"
[1] 3
      1P GAIN CNV 1P GAIN WILD-TYPE 
               24               373 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               24               373 
[1] "1q gain"
[1] 3
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               83               314 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
               83               314 
[1] "2p gain"
[1] 3
      2P GAIN CNV 2P GAIN WILD-TYPE 
               97               300 
      2P GAIN CNV 2P GAIN WILD-TYPE 
               97               300 
[1] "2q gain"
[1] 3
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               43               354 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               43               354 
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
               47               350 
      3P GAIN CNV 3P GAIN WILD-TYPE 
               47               350 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              180               217 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              180               217 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
               14               383 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               14               383 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                7               390 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                7               390 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
              185               212 
      5P GAIN CNV 5P GAIN WILD-TYPE 
              185               212 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               43               354 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               43               354 
[1] "6p gain"
[1] 3
      6P GAIN CNV 6P GAIN WILD-TYPE 
               36               361 
      6P GAIN CNV 6P GAIN WILD-TYPE 
               36               361 
[1] "6q gain"
[1] 3
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               24               373 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               24               373 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
              109               288 
      7P GAIN CNV 7P GAIN WILD-TYPE 
              109               288 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              101               296 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              101               296 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               48               349 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               48               349 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              114               283 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              114               283 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
               19               378 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               19               378 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               32               365 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               32               365 
[1] "10p gain"
[1] 3
      10P GAIN CNV 10P GAIN WILD-TYPE 
                22                375 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                22                375 
[1] "10q gain"
[1] 3
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 8                389 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 8                389 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                23                374 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                23                374 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                26                371 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                26                371 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
               111                286 
      12P GAIN CNV 12P GAIN WILD-TYPE 
               111                286 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                49                348 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                49                348 
[1] "13q gain"
[1] 3
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                10                387 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                10                387 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                41                356 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                41                356 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                39                358 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                39                358 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                17                380 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                17                380 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                23                374 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                23                374 
[1] "17p gain"
[1] 3
      17P GAIN CNV 17P GAIN WILD-TYPE 
                11                386 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                11                386 
[1] "17q gain"
[1] 3
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                44                353 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                44                353 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                67                330 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                67                330 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                44                353 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                44                353 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
                40                357 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                40                357 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                58                339 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                58                339 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
               109                288 
      20P GAIN CNV 20P GAIN WILD-TYPE 
               109                288 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                95                302 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
                95                302 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                19                378 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                19                378 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                97                300 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
                97                300 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               11               386 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               11               386 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
               59               338 
      1P LOSS CNV 1P LOSS WILD-TYPE 
               59               338 
[1] "1q loss"
[1] 3
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                9               388 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                9               388 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
                4               393 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                4               393 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               11               386 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               11               386 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
              161               236 
      3P LOSS CNV 3P LOSS WILD-TYPE 
              161               236 
[1] "3q loss"
[1] 3
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               26               371 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               26               371 
[1] "4p loss"
[1] 3
      4P LOSS CNV 4P LOSS WILD-TYPE 
              164               233 
      4P LOSS CNV 4P LOSS WILD-TYPE 
              164               233 
[1] "4q loss"
[1] 3
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
              143               254 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
              143               254 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
               24               373 
      5P LOSS CNV 5P LOSS WILD-TYPE 
               24               373 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
              146               251 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
              146               251 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
               35               362 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               35               362 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               40               357 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               40               357 
[1] "7p loss"
[1] 3
      7P LOSS CNV 7P LOSS WILD-TYPE 
               23               374 
      7P LOSS CNV 7P LOSS WILD-TYPE 
               23               374 
[1] "7q loss"
[1] 3
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               13               384 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               13               384 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
              117               280 
      8P LOSS CNV 8P LOSS WILD-TYPE 
              117               280 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               12               385 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               12               385 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
              164               233 
      9P LOSS CNV 9P LOSS WILD-TYPE 
              164               233 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
              103               294 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
              103               294 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
                87                310 
      10P LOSS CNV 10P LOSS WILD-TYPE 
                87                310 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                91                306 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
                91                306 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
                59                338 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                59                338 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                42                355 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                42                355 
[1] "12p loss"
[1] 3
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 7                390 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 7                390 
[1] "12q loss"
[1] 3
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 9                388 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 9                388 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               146                251 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               146                251 
[1] "14q loss"
[1] 3
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                70                327 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                70                327 
[1] "15q loss"
[1] 3
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                44                353 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                44                353 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
                60                337 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                60                337 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                80                317 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                80                317 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
               145                252 
      17P LOSS CNV 17P LOSS WILD-TYPE 
               145                252 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                25                372 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                25                372 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
                43                354 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                43                354 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                76                321 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                76                321 
[1] "19p loss"
[1] 3
      19P LOSS CNV 19P LOSS WILD-TYPE 
                65                332 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                65                332 
[1] "19q loss"
[1] 3
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                43                354 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                43                354 
[1] "20p loss"
[1] 3
      20P LOSS CNV 20P LOSS WILD-TYPE 
                17                380 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                17                380 
[1] "20q loss"
[1] 3
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                22                375 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                22                375 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
               122                275 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
               122                275 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                38                359 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                38                359 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               15               382 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               15               382 
[1] "data2feature, selection="
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 397 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 397 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain
D1V1, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           5                38
  CLUS_2           3                47
  CLUS_3           2                28
  CLUS_4           3                28
D1V2, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           3                25
  CLUS_2           3                51
  CLUS_3           7                65
D1V3, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           6               137
  CLUS_2          10               119
  CLUS_3           8               117
D1V4, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           3                95
  CLUS_2           5                78
  CLUS_3           4                65
D1V5, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           2                58
  CLUS_2           2                71
  CLUS_3           1                60
D1V6, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           3                55
  CLUS_2           0                47
  CLUS_3           2                47
  CLUS_4           0                40
D1V7, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           5                72
  CLUS_2           6                96
  CLUS_3          10               101
  CLUS_4           1                54
D1V8, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           6               101
  CLUS_2           8                62
  CLUS_3           8               160
D1V9, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1          10               123
  CLUS_2           8               158
  CLUS_3           4                64
D1V10, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           6               107
  CLUS_2          11               170
  CLUS_3           5                68

Clustering(2) Variable = 1q gain
D2V1, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           8                35
  CLUS_2          16                34
  CLUS_3           3                27
  CLUS_4           7                24
D2V2, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           6                22
  CLUS_2          17                37
  CLUS_3          11                61
D2V3, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          18               125
  CLUS_2          44                85
  CLUS_3          21               104
D2V4, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          11                87
  CLUS_2          20                63
  CLUS_3          19                50
D2V5, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          13                47
  CLUS_2          11                62
  CLUS_3          10                51
D2V6, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          14                44
  CLUS_2           7                40
  CLUS_3           8                41
  CLUS_4           5                35
D2V7, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           9                68
  CLUS_2          31                71
  CLUS_3          26                85
  CLUS_4           7                48
D2V8, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          31                76
  CLUS_2          18                52
  CLUS_3          24               144
D2V9, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          28               105
  CLUS_2          27               139
  CLUS_3          24                44
D2V10, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          22                91
  CLUS_2          31               150
  CLUS_3          26                47

Clustering(3) Variable = 2p gain
D3V1, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           7                36
  CLUS_2          19                31
  CLUS_3           2                28
  CLUS_4           7                24
D3V2, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           4                24
  CLUS_2          20                34
  CLUS_3          11                61
D3V3, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          12               131
  CLUS_2          58                71
  CLUS_3          27                98
D3V4, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          14                84
  CLUS_2          35                48
  CLUS_3          14                55
D3V5, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          19                41
  CLUS_2          11                62
  CLUS_3          16                45
D3V6, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          19                39
  CLUS_2          11                36
  CLUS_3          10                39
  CLUS_4           6                34
D3V7, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           8                69
  CLUS_2          36                66
  CLUS_3          25                86
  CLUS_4           6                49
D3V8, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          38                69
  CLUS_2          18                52
  CLUS_3          19               149
D3V9, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          31               102
  CLUS_2          43               123
  CLUS_3          18                50
D3V10, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          34                79
  CLUS_2          34               147
  CLUS_3          24                49

Clustering(4) Variable = 2q gain
D4V1, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           3                40
  CLUS_2          11                39
  CLUS_3           2                28
  CLUS_4           3                28
D4V2, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           3                25
  CLUS_2          12                42
  CLUS_3           4                68
D4V3, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           4               139
  CLUS_2          27               102
  CLUS_3          12               113
D4V4, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           4                94
  CLUS_2          16                67
  CLUS_3           6                63
D4V5, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          10                50
  CLUS_2           5                68
  CLUS_3           8                53
D4V6, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          11                47
  CLUS_2           4                43
  CLUS_3           4                45
  CLUS_4           4                36
D4V7, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           2                75
  CLUS_2          20                82
  CLUS_3          10               101
  CLUS_4           2                53
D4V8, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          19                88
  CLUS_2           8                62
  CLUS_3           7               161
D4V9, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          15               118
  CLUS_2          16               150
  CLUS_3          10                58
D4V10, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          14                99
  CLUS_2          16               165
  CLUS_3          11                62

Clustering(5) Variable = 3p gain
D5V1, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           4                39
  CLUS_2           8                42
  CLUS_3           2                28
  CLUS_4           5                26
D5V2, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           3                25
  CLUS_2          10                44
  CLUS_3           6                66
D5V3, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           9               134
  CLUS_2          23               106
  CLUS_3          15               110
D5V4, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           4                94
  CLUS_2          19                64
  CLUS_3           6                63
D5V5, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           6                54
  CLUS_2          10                63
  CLUS_3           9                52
D5V6, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           5                53
  CLUS_2           8                39
  CLUS_3           8                41
  CLUS_4           4                36
D5V7, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           5                72
  CLUS_2          17                85
  CLUS_3          11               100
  CLUS_4           5                50
D5V8, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1          17                90
  CLUS_2           6                64
  CLUS_3          15               153
D5V9, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1          17               116
  CLUS_2          18               148
  CLUS_3           8                60
D5V10, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1          18                95
  CLUS_2          15               166
  CLUS_3          10                63

Clustering(6) Variable = 3q gain
D6V1, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          22                21
  CLUS_2          25                25
  CLUS_3           8                22
  CLUS_4          18                13
D6V2, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          11                17
  CLUS_2          27                27
  CLUS_3          35                37
D6V3, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          51                92
  CLUS_2          63                66
  CLUS_3          66                59
D6V4, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          35                63
  CLUS_2          42                41
  CLUS_3          37                32
D6V5, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          32                28
  CLUS_2          29                44
  CLUS_3          28                33
D6V6, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          27                31
  CLUS_2          25                22
  CLUS_3          23                26
  CLUS_4          14                26
D6V7, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          37                40
  CLUS_2          48                54
  CLUS_3          58                53
  CLUS_4          16                39
D6V8, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          51                56
  CLUS_2          38                32
  CLUS_3          70                98
D6V9, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          62                71
  CLUS_2          77                89
  CLUS_3          30                38
D6V10, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          56                57
  CLUS_2          78               103
  CLUS_3          35                38

Clustering(7) Variable = 4p gain
D7V1, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           1                42
  CLUS_2           1                49
  CLUS_3           2                28
  CLUS_4           4                27
D7V2, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           3                25
  CLUS_2           1                53
  CLUS_3           4                68
D7V3, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           3               140
  CLUS_2           1               128
  CLUS_3          10               115
D7V4, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           3                95
  CLUS_2           0                83
  CLUS_3           3                66
D7V5, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           2                58
  CLUS_2           0                73
  CLUS_3           3                58
D7V6, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           3                55
  CLUS_2           1                46
  CLUS_3           0                49
  CLUS_4           1                39
D7V7, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           0                77
  CLUS_2           1               101
  CLUS_3           8               103
  CLUS_4           4                51
D7V8, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           1               106
  CLUS_2           7                63
  CLUS_3           5               163
D7V9, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           6               127
  CLUS_2           5               161
  CLUS_3           1                67
D7V10, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           3               110
  CLUS_2           8               173
  CLUS_3           1                72

Clustering(8) Variable = 4q gain
D8V1, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           1                42
  CLUS_2           2                48
  CLUS_3           1                29
  CLUS_4           1                30
D8V2, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                28
  CLUS_2           2                52
  CLUS_3           3                69
D8V3, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0               143
  CLUS_2           3               126
  CLUS_3           4               121
D8V4, multiclass
[1] "Remove cluster labels:" "4Q GAIN CNV"           
clus
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                2               248 
       TCGA-18-3417        TCGA-18-4721        TCGA-18-5592        TCGA-18-5595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5784        TCGA-21-5786 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5787        TCGA-22-4593        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4609        TCGA-22-4613        TCGA-22-5471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5472        TCGA-22-5473        TCGA-22-5474        TCGA-22-5477 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5478        TCGA-22-5479        TCGA-22-5480        TCGA-22-5481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5483        TCGA-22-5485        TCGA-22-5489 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5491        TCGA-22-5492        TCGA-33-4566        TCGA-33-4582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4583        TCGA-33-4586        TCGA-33-4587        TCGA-33-4589 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-6737        TCGA-33-6738        TCGA-34-5231        TCGA-34-5232 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-34-8454        TCGA-34-8455        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5034 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5035        TCGA-39-5036        TCGA-39-5037        TCGA-39-5039 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5040        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-6025        TCGA-46-6026 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-5897        TCGA-56-5898        TCGA-56-6545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7580        TCGA-56-7582        TCGA-56-7730        TCGA-56-7731 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-7823        TCGA-56-8082        TCGA-56-8083 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8201        TCGA-56-8304        TCGA-56-8305        TCGA-56-8307 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8308        TCGA-56-8309        TCGA-56-8503        TCGA-56-8504 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8622        TCGA-56-8623        TCGA-56-8624        TCGA-56-8625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8626        TCGA-56-8628        TCGA-56-8629        TCGA-58-8386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-60-2697        TCGA-60-2703 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2704        TCGA-60-2709        TCGA-63-5128        TCGA-63-5131 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-6202        TCGA-63-7020        TCGA-63-7021        TCGA-63-7022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-7023        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-70-6722        TCGA-70-6723 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6842        TCGA-77-6843        TCGA-77-6844        TCGA-77-6845 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7138        TCGA-77-7139        TCGA-77-7140        TCGA-77-7141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7142        TCGA-77-7335        TCGA-77-7337        TCGA-77-7338 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7463        TCGA-77-7465        TCGA-77-8007        TCGA-77-8008 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8009        TCGA-77-8128        TCGA-77-8130        TCGA-77-8131 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8133        TCGA-77-8136        TCGA-77-8138        TCGA-77-8139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8140        TCGA-77-8143        TCGA-77-8144        TCGA-77-8145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8148        TCGA-77-8150        TCGA-77-8153        TCGA-77-8154 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8156        TCGA-79-5596        TCGA-85-6175        TCGA-85-6560 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7710        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8584        TCGA-85-8664 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8666        TCGA-85-A4JC        TCGA-85-A4PA        TCGA-85-A4QR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-6837        TCGA-90-7766        TCGA-90-7767        TCGA-90-7769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7341        TCGA-92-8063        TCGA-92-8064        TCGA-92-8065 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-7033        TCGA-94-7557        TCGA-94-7943        TCGA-94-8035 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-8490        TCGA-94-8491        TCGA-94-A4VJ        TCGA-96-7544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7545        TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020        TCGA-98-8021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023        TCGA-L3-A4E7        TCGA-LA-A446 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
D8V5, multiclass
[1] "Remove cluster labels:" "4Q GAIN CNV"           
clus
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                1               193 
       TCGA-18-4721        TCGA-18-5592        TCGA-18-5595        TCGA-21-1070 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5784 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0940        TCGA-22-1000 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-4591        TCGA-22-4596        TCGA-22-4605 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4607        TCGA-22-4609        TCGA-22-5471        TCGA-22-5472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5473        TCGA-22-5474        TCGA-22-5477        TCGA-22-5478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5479        TCGA-22-5480        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4547        TCGA-33-4566        TCGA-33-4582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2604        TCGA-34-2605        TCGA-34-2608        TCGA-34-2609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5231        TCGA-34-5232        TCGA-34-5234        TCGA-34-5236 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5239        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3789        TCGA-37-3792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5011        TCGA-39-5016        TCGA-39-5019 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5021        TCGA-39-5022        TCGA-39-5024        TCGA-39-5027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5028        TCGA-39-5029        TCGA-39-5030        TCGA-39-5031 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5034        TCGA-39-5035        TCGA-39-5037        TCGA-39-5040 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2578        TCGA-43-2581        TCGA-43-3394        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7658        TCGA-46-6025        TCGA-46-6026 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7810        TCGA-52-7811        TCGA-52-7812        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7730        TCGA-60-2695        TCGA-60-2696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-5131        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-7022        TCGA-63-7023        TCGA-66-2727        TCGA-66-2737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2773        TCGA-66-2777 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2788        TCGA-66-2790        TCGA-66-2791 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7139        TCGA-77-7141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7142        TCGA-77-7335        TCGA-77-7337        TCGA-77-7338 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7463        TCGA-77-7465        TCGA-79-5596        TCGA-85-6175 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-85-7950        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-92-7340 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-7033        TCGA-94-7557        TCGA-94-7943        TCGA-96-7544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454 
"4Q GAIN WILD-TYPE" 
D8V6, multiclass
[1] "Remove cluster labels:" "4Q GAIN CNV"           
clus
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                1               193 
       TCGA-18-4721        TCGA-18-5592        TCGA-18-5595        TCGA-21-1070 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5784 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0940        TCGA-22-1000 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-4591        TCGA-22-4596        TCGA-22-4605 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4607        TCGA-22-4609        TCGA-22-5471        TCGA-22-5472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5473        TCGA-22-5474        TCGA-22-5477        TCGA-22-5478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5479        TCGA-22-5480        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4547        TCGA-33-4566        TCGA-33-4582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2604        TCGA-34-2605        TCGA-34-2608        TCGA-34-2609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5231        TCGA-34-5232        TCGA-34-5234        TCGA-34-5236 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5239        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3789        TCGA-37-3792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5011        TCGA-39-5016        TCGA-39-5019 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5021        TCGA-39-5022        TCGA-39-5024        TCGA-39-5027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5028        TCGA-39-5029        TCGA-39-5030        TCGA-39-5031 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5034        TCGA-39-5035        TCGA-39-5037        TCGA-39-5040 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2578        TCGA-43-2581        TCGA-43-3394        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7658        TCGA-46-6025        TCGA-46-6026 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7810        TCGA-52-7811        TCGA-52-7812        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7730        TCGA-60-2695        TCGA-60-2696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-5131        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-7022        TCGA-63-7023        TCGA-66-2727        TCGA-66-2737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2773        TCGA-66-2777 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2788        TCGA-66-2790        TCGA-66-2791 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7139        TCGA-77-7141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7142        TCGA-77-7335        TCGA-77-7337        TCGA-77-7338 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7463        TCGA-77-7465        TCGA-79-5596        TCGA-85-6175 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-85-7950        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-92-7340 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-7033        TCGA-94-7557        TCGA-94-7943        TCGA-96-7544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454 
"4Q GAIN WILD-TYPE" 
D8V7, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           1                76
  CLUS_2           2               100
  CLUS_3           3               108
  CLUS_4           0                55
D8V8, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           3               104
  CLUS_2           3                67
  CLUS_3           0               168
D8V9, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           3               130
  CLUS_2           2               164
  CLUS_3           1                67
D8V10, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           2               111
  CLUS_2           3               178
  CLUS_3           1                72

Clustering(9) Variable = 5p gain
D9V1, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          22                21
  CLUS_2          22                28
  CLUS_3          13                17
  CLUS_4          13                18
D9V2, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          12                16
  CLUS_2          25                29
  CLUS_3          33                39
D9V3, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          47                96
  CLUS_2          58                71
  CLUS_3          80                45
D9V4, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          44                54
  CLUS_2          32                51
  CLUS_3          43                26
D9V5, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          29                31
  CLUS_2          41                32
  CLUS_3          25                36
D9V6, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          31                27
  CLUS_2          18                29
  CLUS_3          28                21
  CLUS_4          18                22
D9V7, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          38                39
  CLUS_2          40                62
  CLUS_3          60                51
  CLUS_4          21                34
D9V8, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          44                63
  CLUS_2          38                32
  CLUS_3          77                91
D9V9, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          63                70
  CLUS_2          84                82
  CLUS_3          29                39
D9V10, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          57                56
  CLUS_2          88                93
  CLUS_3          31                42

Clustering(10) Variable = 5q gain
D10V1, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           7                36
  CLUS_2           4                46
  CLUS_3           4                26
  CLUS_4           0                31
D10V2, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           1                27
  CLUS_2           4                50
  CLUS_3          10                62
D10V3, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          10               133
  CLUS_2          14               115
  CLUS_3          19               106
D10V4, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          10                88
  CLUS_2           5                78
  CLUS_3          11                58
D10V5, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           5                55
  CLUS_2          10                63
  CLUS_3           7                54
D10V6, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           7                51
  CLUS_2           3                44
  CLUS_3           7                42
  CLUS_4           5                35
D10V7, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          11                66
  CLUS_2           6                96
  CLUS_3          16                95
  CLUS_4           3                52
D10V8, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           6               101
  CLUS_2           9                61
  CLUS_3          21               147
D10V9, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          17               116
  CLUS_2          20               146
  CLUS_3           5                63
D10V10, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          18                95
  CLUS_2          19               162
  CLUS_3           5                68

Clustering(11) Variable = 6p gain
D11V1, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           3                40
  CLUS_2           4                46
  CLUS_3           0                30
  CLUS_4           9                22
D11V2, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           7                21
  CLUS_2           6                48
  CLUS_3           3                69
D11V3, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           6               137
  CLUS_2           8               121
  CLUS_3          22               103
D11V4, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           9                89
  CLUS_2           4                79
  CLUS_3           6                63
D11V5, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           7                53
  CLUS_2           7                66
  CLUS_3           4                57
D11V6, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           5                53
  CLUS_2           5                42
  CLUS_3           7                42
  CLUS_4           1                39
D11V7, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           4                73
  CLUS_2           8                94
  CLUS_3          15                96
  CLUS_4           5                50
D11V8, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1          10                97
  CLUS_2          13                57
  CLUS_3           9               159
D11V9, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1          13               120
  CLUS_2          15               151
  CLUS_3           6                62
D11V10, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1          10               103
  CLUS_2          18               163
  CLUS_3           6                67

Clustering(12) Variable = 6q gain
D12V1, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           4                39
  CLUS_2           0                50
  CLUS_3           0                30
  CLUS_4           5                26
D12V2, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           4                24
  CLUS_2           1                53
  CLUS_3           4                68
D12V3, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           3               140
  CLUS_2           4               125
  CLUS_3          17               108
D12V4, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           1                97
  CLUS_2           2                81
  CLUS_3           9                60
D12V5, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           4                56
  CLUS_2           4                69
  CLUS_3           2                59
D12V6, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           2                56
  CLUS_2           3                44
  CLUS_3           4                45
  CLUS_4           1                39
D12V7, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           4                73
  CLUS_2           2               100
  CLUS_3          11               100
  CLUS_4           2                53
D12V8, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           4               103
  CLUS_2           9                61
  CLUS_3           6               162
D12V9, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           8               125
  CLUS_2           9               157
  CLUS_3           6                62
D12V10, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           7               106
  CLUS_2           9               172
  CLUS_3           7                66

Clustering(13) Variable = 7p gain
D13V1, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          10                33
  CLUS_2          19                31
  CLUS_3           5                25
  CLUS_4          10                21
D13V2, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           9                19
  CLUS_2          19                35
  CLUS_3          16                56
D13V3, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          22               121
  CLUS_2          55                74
  CLUS_3          32                93
D13V4, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          17                81
  CLUS_2          34                49
  CLUS_3          15                54
D13V5, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          18                42
  CLUS_2          22                51
  CLUS_3          15                46
D13V6, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          16                42
  CLUS_2          13                34
  CLUS_3          15                34
  CLUS_4          11                29
D13V7, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          17                60
  CLUS_2          36                66
  CLUS_3          22                89
  CLUS_4          15                40
D13V8, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          41                66
  CLUS_2          17                53
  CLUS_3          32               136
D13V9, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          34                99
  CLUS_2          46               120
  CLUS_3          23                45
D13V10, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          37                76
  CLUS_2          40               141
  CLUS_3          26                47

Clustering(14) Variable = 7q gain
D14V1, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          10                33
  CLUS_2          20                30
  CLUS_3           4                26
  CLUS_4           9                22
D14V2, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           6                22
  CLUS_2          21                33
  CLUS_3          16                56
D14V3, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          13               130
  CLUS_2          63                66
  CLUS_3          25               100
D14V4, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           9                89
  CLUS_2          35                48
  CLUS_3          12                57
D14V5, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          18                42
  CLUS_2          20                53
  CLUS_3          15                46
D14V6, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          14                44
  CLUS_2          14                33
  CLUS_3          15                34
  CLUS_4          10                30
D14V7, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          14                63
  CLUS_2          40                62
  CLUS_3          21                90
  CLUS_4          10                45
D14V8, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          44                63
  CLUS_2          15                55
  CLUS_3          26               142
D14V9, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          31               102
  CLUS_2          40               126
  CLUS_3          24                44
D14V10, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          35                78
  CLUS_2          34               147
  CLUS_3          26                47

Clustering(15) Variable = 8p gain
D15V1, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           8                35
  CLUS_2           3                47
  CLUS_3           2                28
  CLUS_4           6                25
D15V2, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           5                23
  CLUS_2           3                51
  CLUS_3          11                61
D15V3, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          15               128
  CLUS_2          10               119
  CLUS_3          23               102
D15V4, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          11                87
  CLUS_2           6                77
  CLUS_3          13                56
D15V5, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          11                49
  CLUS_2          10                63
  CLUS_3          10                51
D15V6, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          13                45
  CLUS_2           5                42
  CLUS_3           7                42
  CLUS_4           6                34
D15V7, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           8                69
  CLUS_2           7                95
  CLUS_3          20                91
  CLUS_4           9                46
D15V8, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           6               101
  CLUS_2          17                53
  CLUS_3          21               147
D15V9, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          18               115
  CLUS_2          22               144
  CLUS_3           4                64
D15V10, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          18                95
  CLUS_2          22               159
  CLUS_3           4                69

Clustering(16) Variable = 8q gain
D16V1, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          18                25
  CLUS_2          10                40
  CLUS_3           7                23
  CLUS_4          14                17
D16V2, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          11                17
  CLUS_2          10                44
  CLUS_3          28                44
D16V3, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          40               103
  CLUS_2          27               102
  CLUS_3          47                78
D16V4, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          28                70
  CLUS_2          13                70
  CLUS_3          27                42
D16V5, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          18                42
  CLUS_2          24                49
  CLUS_3          16                45
D16V6, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          21                37
  CLUS_2          14                33
  CLUS_3          13                36
  CLUS_4          10                30
D16V7, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          24                53
  CLUS_2          16                86
  CLUS_3          42                69
  CLUS_4          18                37
D16V8, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          19                88
  CLUS_2          29                41
  CLUS_3          52               116
D16V9, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          45                88
  CLUS_2          47               119
  CLUS_3          10                58
D16V10, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          34                79
  CLUS_2          55               126
  CLUS_3          13                60

Clustering(17) Variable = 9p gain
D17V1, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           1                42
  CLUS_2           4                46
  CLUS_3           1                29
  CLUS_4           4                27
D17V2, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           3                25
  CLUS_2           5                49
  CLUS_3           2                70
D17V3, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           6               137
  CLUS_2          10               119
  CLUS_3           3               122
D17V4, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           4                94
  CLUS_2           5                78
  CLUS_3           3                66
D17V5, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           6                54
  CLUS_2           2                71
  CLUS_3           2                59
D17V6, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           9                49
  CLUS_2           0                47
  CLUS_3           0                49
  CLUS_4           1                39
D17V7, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           1                76
  CLUS_2           9                93
  CLUS_3           7               104
  CLUS_4           1                54
D17V8, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           9                98
  CLUS_2           6                64
  CLUS_3           3               165
D17V9, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           9               124
  CLUS_2           6               160
  CLUS_3           4                64
D17V10, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           2               111
  CLUS_2          12               169
  CLUS_3           5                68

Clustering(18) Variable = 9q gain
D18V1, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           2                41
  CLUS_2           9                41
  CLUS_3           2                28
  CLUS_4           4                27
D18V2, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           3                25
  CLUS_2          10                44
  CLUS_3           4                68
D18V3, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           8               135
  CLUS_2          19               110
  CLUS_3           5               120
D18V4, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           3                95
  CLUS_2          10                73
  CLUS_3           3                66
D18V5, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           7                53
  CLUS_2           2                71
  CLUS_3           7                54
D18V6, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1          11                47
  CLUS_2           3                44
  CLUS_3           0                49
  CLUS_4           2                38
D18V7, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           3                74
  CLUS_2          15                87
  CLUS_3           9               102
  CLUS_4           1                54
D18V8, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1          15                92
  CLUS_2           6                64
  CLUS_3           7               161
D18V9, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1          12               121
  CLUS_2           9               157
  CLUS_3          11                57
D18V10, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           8               105
  CLUS_2          13               168
  CLUS_3          11                62

Clustering(19) Variable = 10p gain
D19V1, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            1                 42
  CLUS_2            1                 49
  CLUS_3            0                 30
  CLUS_4            3                 28
D19V2, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            1                 27
  CLUS_2            2                 52
  CLUS_3            2                 70
D19V3, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            5                138
  CLUS_2            9                120
  CLUS_3            8                117
D19V4, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            8                 90
  CLUS_2            3                 80
  CLUS_3            6                 63
D19V5, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            2                 58
  CLUS_2            6                 67
  CLUS_3            4                 57
D19V6, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            3                 55
  CLUS_2            1                 46
  CLUS_3            5                 44
  CLUS_4            3                 37
D19V7, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            3                 74
  CLUS_2            5                 97
  CLUS_3            5                106
  CLUS_4            5                 50
D19V8, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            5                102
  CLUS_2            5                 65
  CLUS_3            8                160
D19V9, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            5                128
  CLUS_2           13                153
  CLUS_3            3                 65
D19V10, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            9                104
  CLUS_2            9                172
  CLUS_3            3                 70

Clustering(20) Variable = 10q gain
D20V1, multiclass
[1] "Remove cluster labels:" "10Q GAIN CNV"          
clus
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 2                152 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3417         TCGA-18-3419         TCGA-18-3421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4083         TCGA-18-4086         TCGA-21-1070 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1071         TCGA-21-1072         TCGA-21-1075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1076         TCGA-21-1077         TCGA-21-1078 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1082         TCGA-21-1083         TCGA-22-0940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4594         TCGA-22-4595         TCGA-22-4596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4589         TCGA-34-2596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5240 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-37-3783         TCGA-37-3789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5029         TCGA-39-5030 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-43-2576         TCGA-43-2578 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2581         TCGA-43-3394         TCGA-43-3920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3765         TCGA-46-3766         TCGA-46-3767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-3769         TCGA-51-4079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-56-1622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2695         TCGA-60-2696         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2706         TCGA-60-2707         TCGA-60-2708 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-63-5128         TCGA-63-5131         TCGA-66-2727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
D20V2, multiclass
[1] "Remove cluster labels:" "10Q GAIN CNV"          
clus
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 2                152 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3417         TCGA-18-3419         TCGA-18-3421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4083         TCGA-18-4086         TCGA-21-1070 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1071         TCGA-21-1072         TCGA-21-1075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1076         TCGA-21-1077         TCGA-21-1078 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1082         TCGA-21-1083         TCGA-22-0940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4594         TCGA-22-4595         TCGA-22-4596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4589         TCGA-34-2596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5240 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-37-3783         TCGA-37-3789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5029         TCGA-39-5030 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-43-2576         TCGA-43-2578 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2581         TCGA-43-3394         TCGA-43-3920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3765         TCGA-46-3766         TCGA-46-3767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-3769         TCGA-51-4079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-56-1622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2695         TCGA-60-2696         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2706         TCGA-60-2707         TCGA-60-2708 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-63-5128         TCGA-63-5131         TCGA-66-2727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
D20V3, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            1                142
  CLUS_2            3                126
  CLUS_3            4                121
D20V4, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            3                 95
  CLUS_2            2                 81
  CLUS_3            2                 67
D20V5, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            1                 59
  CLUS_2            4                 69
  CLUS_3            0                 61
D20V6, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            2                 56
  CLUS_2            0                 47
  CLUS_3            2                 47
  CLUS_4            1                 39
D20V7, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            0                 77
  CLUS_2            3                 99
  CLUS_3            1                110
  CLUS_4            2                 53
D20V8, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            3                104
  CLUS_2            1                 69
  CLUS_3            2                166
D20V9, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            3                130
  CLUS_2            4                162
  CLUS_3            1                 67
D20V10, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            4                109
  CLUS_2            3                178
  CLUS_3            1                 72

Clustering(21) Variable = 11p gain
D21V1, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            4                 39
  CLUS_2            4                 46
  CLUS_3            2                 28
  CLUS_4            3                 28
D21V2, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            2                 26
  CLUS_2            4                 50
  CLUS_3            7                 65
D21V3, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            5                138
  CLUS_2           12                117
  CLUS_3            6                119
D21V4, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            2                 96
  CLUS_2            7                 76
  CLUS_3            2                 67
D21V5, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            6                 54
  CLUS_2            3                 70
  CLUS_3            4                 57
D21V6, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            4                 54
  CLUS_2            6                 41
  CLUS_3            2                 47
  CLUS_4            1                 39
D21V7, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            2                 75
  CLUS_2            7                 95
  CLUS_3            9                102
  CLUS_4            2                 53
D21V8, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            7                100
  CLUS_2            7                 63
  CLUS_3            6                162
D21V9, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1           10                123
  CLUS_2            9                157
  CLUS_3            4                 64
D21V10, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            9                104
  CLUS_2           10                171
  CLUS_3            4                 69

Clustering(22) Variable = 11q gain
D22V1, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            5                 38
  CLUS_2            2                 48
  CLUS_3            0                 30
  CLUS_4            4                 27
D22V2, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            2                 26
  CLUS_2            2                 52
  CLUS_3            7                 65
D22V3, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            3                140
  CLUS_2           12                117
  CLUS_3           11                114
D22V4, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            2                 96
  CLUS_2            6                 77
  CLUS_3            8                 61
D22V5, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            6                 54
  CLUS_2            5                 68
  CLUS_3            6                 55
D22V6, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            5                 53
  CLUS_2            5                 42
  CLUS_3            6                 43
  CLUS_4            1                 39
D22V7, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            5                 72
  CLUS_2            5                 97
  CLUS_3            9                102
  CLUS_4            2                 53
D22V8, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            6                101
  CLUS_2            8                 62
  CLUS_3            7                161
D22V9, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1           10                123
  CLUS_2           11                155
  CLUS_3            4                 64
D22V10, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1           10                103
  CLUS_2           11                170
  CLUS_3            4                 69

Clustering(23) Variable = 12p gain
D23V1, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            6                 37
  CLUS_2           20                 30
  CLUS_3            6                 24
  CLUS_4           12                 19
D23V2, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            9                 19
  CLUS_2           20                 34
  CLUS_3           15                 57
D23V3, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           19                124
  CLUS_2           52                 77
  CLUS_3           40                 85
D23V4, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           21                 77
  CLUS_2           30                 53
  CLUS_3           22                 47
D23V5, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           24                 36
  CLUS_2           23                 50
  CLUS_3           15                 46
D23V6, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           18                 40
  CLUS_2           15                 32
  CLUS_3           19                 30
  CLUS_4           10                 30
D23V7, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           13                 64
  CLUS_2           34                 68
  CLUS_3           34                 77
  CLUS_4           10                 45
D23V8, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           35                 72
  CLUS_2           21                 49
  CLUS_3           35                133
D23V9, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           39                 94
  CLUS_2           45                121
  CLUS_3           19                 49
D23V10, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           35                 78
  CLUS_2           45                136
  CLUS_3           23                 50

Clustering(24) Variable = 12q gain
D24V1, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            2                 41
  CLUS_2            9                 41
  CLUS_3            3                 27
  CLUS_4            8                 23
D24V2, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            6                 22
  CLUS_2            9                 45
  CLUS_3            7                 65
D24V3, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            5                138
  CLUS_2           31                 98
  CLUS_3           13                112
D24V4, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            5                 93
  CLUS_2           12                 71
  CLUS_3           11                 58
D24V5, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           12                 48
  CLUS_2            7                 66
  CLUS_3            8                 53
D24V6, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            9                 49
  CLUS_2            8                 39
  CLUS_3            5                 44
  CLUS_4            5                 35
D24V7, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            6                 71
  CLUS_2           15                 87
  CLUS_3           16                 95
  CLUS_4            5                 50
D24V8, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           17                 90
  CLUS_2           13                 57
  CLUS_3           12                156
D24V9, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           19                114
  CLUS_2           18                148
  CLUS_3           10                 58
D24V10, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           12                101
  CLUS_2           23                158
  CLUS_3           12                 61

Clustering(25) Variable = 13q gain
D25V1, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            2                 41
  CLUS_2            1                 49
  CLUS_3            0                 30
  CLUS_4            1                 30
D25V2, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            1                 27
  CLUS_2            1                 53
  CLUS_3            2                 70
D25V3, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            2                141
  CLUS_2            8                121
  CLUS_3            0                125
D25V4, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            1                 97
  CLUS_2            3                 80
  CLUS_3            2                 67
D25V5, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            0                 60
  CLUS_2            3                 70
  CLUS_3            3                 58
D25V6, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            1                 57
  CLUS_2            3                 44
  CLUS_3            2                 47
  CLUS_4            0                 40
D25V7, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            3                 74
  CLUS_2            1                101
  CLUS_3            3                108
  CLUS_4            1                 54
D25V8, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            2                105
  CLUS_2            2                 68
  CLUS_3            4                164
D25V9, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            4                129
  CLUS_2            5                161
  CLUS_3            0                 68
D25V10, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            3                110
  CLUS_2            5                176
  CLUS_3            1                 72

Clustering(26) Variable = 14q gain
D26V1, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           10                 33
  CLUS_2            6                 44
  CLUS_3            1                 29
  CLUS_4            4                 27
D26V2, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            6                 48
  CLUS_3           11                 61
D26V3, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           12                131
  CLUS_2           16                113
  CLUS_3           13                112
D26V4, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            5                 93
  CLUS_2            7                 76
  CLUS_3            8                 61
D26V5, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            5                 55
  CLUS_2            7                 66
  CLUS_3            5                 56
D26V6, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            5                 53
  CLUS_2            6                 41
  CLUS_3            4                 45
  CLUS_4            2                 38
D26V7, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           12                 65
  CLUS_2            8                 94
  CLUS_3            7                104
  CLUS_4            8                 47
D26V8, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            9                 98
  CLUS_2            5                 65
  CLUS_3           21                147
D26V9, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           19                114
  CLUS_2           17                149
  CLUS_3            3                 65
D26V10, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           18                 95
  CLUS_2           18                163
  CLUS_3            3                 70

Clustering(27) Variable = 15q gain
D27V1, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            3                 40
  CLUS_2           10                 40
  CLUS_3            2                 28
  CLUS_4            4                 27
D27V2, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            4                 24
  CLUS_2           11                 43
  CLUS_3            4                 68
D27V3, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            6                137
  CLUS_2           22                107
  CLUS_3           11                114
D27V4, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            3                 95
  CLUS_2           12                 71
  CLUS_3            6                 63
D27V5, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            6                 54
  CLUS_2            4                 69
  CLUS_3            9                 52
D27V6, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            6                 52
  CLUS_2            7                 40
  CLUS_3            1                 48
  CLUS_4            5                 35
D27V7, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            1                 76
  CLUS_2           16                 86
  CLUS_3            6                105
  CLUS_4            7                 48
D27V8, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1           15                 92
  CLUS_2            5                 65
  CLUS_3           10                158
D27V9, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1           12                121
  CLUS_2           10                156
  CLUS_3           15                 53
D27V10, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1           12                101
  CLUS_2           11                170
  CLUS_3           14                 59

Clustering(28) Variable = 16p gain
D28V1, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            3                 40
  CLUS_2            3                 47
  CLUS_3            0                 30
  CLUS_4            1                 30
D28V2, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            1                 27
  CLUS_2            3                 51
  CLUS_3            3                 69
D28V3, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            0                143
  CLUS_2            8                121
  CLUS_3            9                116
D28V4, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            2                 96
  CLUS_2            5                 78
  CLUS_3            3                 66
D28V5, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            4                 56
  CLUS_2            4                 69
  CLUS_3            2                 59
D28V6, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            3                 55
  CLUS_2            1                 46
  CLUS_3            5                 44
  CLUS_4            1                 39
D28V7, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            3                 74
  CLUS_2            4                 98
  CLUS_3            7                104
  CLUS_4            1                 54
D28V8, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            6                101
  CLUS_2            5                 65
  CLUS_3            4                164
D28V9, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            5                128
  CLUS_2            9                157
  CLUS_3            2                 66
D28V10, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            4                109
  CLUS_2           10                171
  CLUS_3            2                 71

Clustering(29) Variable = 16q gain
D29V1, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            5                 38
  CLUS_2            3                 47
  CLUS_3            0                 30
  CLUS_4            3                 28
D29V2, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            1                 27
  CLUS_2            4                 50
  CLUS_3            6                 66
D29V3, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            0                143
  CLUS_2           10                119
  CLUS_3           13                112
D29V4, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            3                 95
  CLUS_2            6                 77
  CLUS_3            3                 66
D29V5, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            5                 55
  CLUS_2            6                 67
  CLUS_3            2                 59
D29V6, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            3                 55
  CLUS_2            2                 45
  CLUS_3            7                 42
  CLUS_4            1                 39
D29V7, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            3                 74
  CLUS_2            5                 97
  CLUS_3           10                101
  CLUS_4            2                 53
D29V8, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            7                100
  CLUS_2            4                 66
  CLUS_3            9                159
D29V9, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            9                124
  CLUS_2           10                156
  CLUS_3            2                 66
D29V10, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            5                108
  CLUS_2           14                167
  CLUS_3            2                 71

Clustering(30) Variable = 17p gain
D30V1, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                 43
  CLUS_2            3                 47
  CLUS_3            0                 30
  CLUS_4            1                 30
D30V2, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            1                 27
  CLUS_2            3                 51
  CLUS_3            0                 72
D30V3, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                143
  CLUS_2            9                120
  CLUS_3            2                123
D30V4, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                 98
  CLUS_2            3                 80
  CLUS_3            2                 67
D30V5, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            3                 57
  CLUS_2            0                 73
  CLUS_3            4                 57
D30V6, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            2                 56
  CLUS_2            3                 44
  CLUS_3            0                 49
  CLUS_4            2                 38
D30V7, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                 77
  CLUS_2            5                 97
  CLUS_3            2                109
  CLUS_4            1                 54
D30V8, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            5                102
  CLUS_2            2                 68
  CLUS_3            1                167
D30V9, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            1                132
  CLUS_2            3                163
  CLUS_3            6                 62
D30V10, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            1                112
  CLUS_2            3                178
  CLUS_3            6                 67

Clustering(31) Variable = 17q gain
D31V1, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            3                 40
  CLUS_2           13                 37
  CLUS_3            1                 29
  CLUS_4            6                 25
D31V2, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            2                 26
  CLUS_2           14                 40
  CLUS_3            7                 65
D31V3, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            3                140
  CLUS_2           29                100
  CLUS_3           12                113
D31V4, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            3                 95
  CLUS_2           15                 68
  CLUS_3            5                 64
D31V5, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            8                 52
  CLUS_2            9                 64
  CLUS_3            4                 57
D31V6, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            6                 52
  CLUS_2            5                 42
  CLUS_3            8                 41
  CLUS_4            2                 38
D31V7, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            2                 75
  CLUS_2           20                 82
  CLUS_3           11                100
  CLUS_4            3                 52
D31V8, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1           20                 87
  CLUS_2            6                 64
  CLUS_3           10                158
D31V9, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1           15                118
  CLUS_2           13                153
  CLUS_3           11                 57
D31V10, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1           10                103
  CLUS_2           15                166
  CLUS_3           14                 59

Clustering(32) Variable = 18p gain
D32V1, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            4                 39
  CLUS_2           18                 32
  CLUS_3            3                 27
  CLUS_4            3                 28
D32V2, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            2                 26
  CLUS_2           21                 33
  CLUS_3            5                 67
D32V3, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           14                129
  CLUS_2           42                 87
  CLUS_3           11                114
D32V4, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            9                 89
  CLUS_2           20                 63
  CLUS_3           10                 59
D32V5, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           15                 45
  CLUS_2            9                 64
  CLUS_3           10                 51
D32V6, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           11                 47
  CLUS_2           13                 34
  CLUS_3            7                 42
  CLUS_4            3                 37
D32V7, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           13                 64
  CLUS_2           26                 76
  CLUS_3           10                101
  CLUS_4            4                 51
D32V8, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           29                 78
  CLUS_2            5                 65
  CLUS_3           19                149
D32V9, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           24                109
  CLUS_2           26                140
  CLUS_3           16                 52
D32V10, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           24                 89
  CLUS_2           23                158
  CLUS_3           19                 54

Clustering(33) Variable = 18q gain
D33V1, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            3                 40
  CLUS_2           14                 36
  CLUS_3            1                 29
  CLUS_4            4                 27
D33V2, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            2                 26
  CLUS_2           16                 38
  CLUS_3            4                 68
D33V3, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            8                135
  CLUS_2           24                105
  CLUS_3           12                113
D33V4, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            5                 93
  CLUS_2           11                 72
  CLUS_3            5                 64
D33V5, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            9                 51
  CLUS_2            4                 69
  CLUS_3            8                 53
D33V6, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            7                 51
  CLUS_2           10                 37
  CLUS_3            3                 46
  CLUS_4            1                 39
D33V7, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            6                 71
  CLUS_2           18                 84
  CLUS_3           12                 99
  CLUS_4            0                 55
D33V8, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1           18                 89
  CLUS_2            9                 61
  CLUS_3            9                159
D33V9, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1           19                114
  CLUS_2           13                153
  CLUS_3           11                 57
D33V10, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1           19                 94
  CLUS_2           10                171
  CLUS_3           14                 59

Clustering(34) Variable = 19p gain
D34V1, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            3                 40
  CLUS_2            8                 42
  CLUS_3            0                 30
  CLUS_4            5                 26
D34V2, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            8                 46
  CLUS_3            4                 68
D34V3, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            6                137
  CLUS_2           28                101
  CLUS_3            6                119
D34V4, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            3                 95
  CLUS_2           14                 69
  CLUS_3            9                 60
D34V5, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           15                 45
  CLUS_2            2                 71
  CLUS_3            7                 54
D34V6, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           15                 43
  CLUS_2            4                 43
  CLUS_3            1                 48
  CLUS_4            4                 36
D34V7, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            2                 75
  CLUS_2           15                 87
  CLUS_3           14                 97
  CLUS_4            2                 53
D34V8, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           16                 91
  CLUS_2           10                 60
  CLUS_3            7                161
D34V9, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           13                120
  CLUS_2           13                153
  CLUS_3           13                 55
D34V10, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           11                102
  CLUS_2           15                166
  CLUS_3           13                 60

Clustering(35) Variable = 19q gain
D35V1, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            6                 37
  CLUS_2            8                 42
  CLUS_3            0                 30
  CLUS_4            6                 25
D35V2, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            8                 46
  CLUS_3            8                 64
D35V3, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           10                133
  CLUS_2           31                 98
  CLUS_3           17                108
D35V4, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           12                 86
  CLUS_2           16                 67
  CLUS_3           12                 57
D35V5, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           15                 45
  CLUS_2            7                 66
  CLUS_3           10                 51
D35V6, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           17                 41
  CLUS_2            5                 42
  CLUS_3            4                 45
  CLUS_4            6                 34
D35V7, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            4                 73
  CLUS_2           14                 88
  CLUS_3           23                 88
  CLUS_4            7                 48
D35V8, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           15                 92
  CLUS_2           18                 52
  CLUS_3           15                153
D35V9, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           19                114
  CLUS_2           24                142
  CLUS_3           12                 56
D35V10, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           17                 96
  CLUS_2           25                156
  CLUS_3           13                 60

Clustering(36) Variable = 20p gain
D36V1, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           13                 30
  CLUS_2           20                 30
  CLUS_3            5                 25
  CLUS_4            7                 24
D36V2, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            3                 25
  CLUS_2           20                 34
  CLUS_3           22                 50
D36V3, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           16                127
  CLUS_2           51                 78
  CLUS_3           42                 83
D36V4, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           17                 81
  CLUS_2           30                 53
  CLUS_3           18                 51
D36V5, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           17                 43
  CLUS_2           16                 57
  CLUS_3           16                 45
D36V6, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           12                 46
  CLUS_2           17                 30
  CLUS_3           13                 36
  CLUS_4            7                 33
D36V7, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           13                 64
  CLUS_2           34                 68
  CLUS_3           31                 80
  CLUS_4           15                 40
D36V8, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           33                 74
  CLUS_2           22                 48
  CLUS_3           38                130
D36V9, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           31                102
  CLUS_2           43                123
  CLUS_3           23                 45
D36V10, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           36                 77
  CLUS_2           35                146
  CLUS_3           26                 47

Clustering(37) Variable = 20q gain
D37V1, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           11                 32
  CLUS_2           12                 38
  CLUS_3            7                 23
  CLUS_4           11                 20
D37V2, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            9                 19
  CLUS_2           12                 42
  CLUS_3           20                 52
D37V3, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           12                131
  CLUS_2           36                 93
  CLUS_3           47                 78
D37V4, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           18                 80
  CLUS_2           18                 65
  CLUS_3           21                 48
D37V5, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           14                 46
  CLUS_2           17                 56
  CLUS_3           12                 49
D37V6, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           13                 45
  CLUS_2           11                 36
  CLUS_3           14                 35
  CLUS_4            5                 35
D37V7, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           13                 64
  CLUS_2           21                 81
  CLUS_3           36                 75
  CLUS_4           13                 42
D37V8, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           19                 88
  CLUS_2           24                 46
  CLUS_3           40                128
D37V9, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           32                101
  CLUS_2           38                128
  CLUS_3           14                 54
D37V10, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           33                 80
  CLUS_2           37                144
  CLUS_3           14                 59

Clustering(38) Variable = 21q gain
D38V1, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            2                 41
  CLUS_2            4                 46
  CLUS_3            2                 28
  CLUS_4            2                 29
D38V2, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            3                 25
  CLUS_2            4                 50
  CLUS_3            3                 69
D38V3, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            8                135
  CLUS_2            6                123
  CLUS_3            5                120
D38V4, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            0                 98
  CLUS_2            3                 80
  CLUS_3            7                 62
D38V5, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            4                 56
  CLUS_2            2                 71
  CLUS_3            3                 58
D38V6, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            2                 56
  CLUS_2            3                 44
  CLUS_3            2                 47
  CLUS_4            2                 38
D38V7, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            5                 72
  CLUS_2            3                 99
  CLUS_3            6                105
  CLUS_4            3                 52
D38V8, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            3                104
  CLUS_2            4                 66
  CLUS_3           10                158
D38V9, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            7                126
  CLUS_2            6                160
  CLUS_3            4                 64
D38V10, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            5                108
  CLUS_2            6                175
  CLUS_3            6                 67

Clustering(39) Variable = 22q gain
D39V1, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           10                 33
  CLUS_2           21                 29
  CLUS_3            4                 26
  CLUS_4            3                 28
D39V2, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            3                 25
  CLUS_2           21                 33
  CLUS_3           14                 58
D39V3, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           12                131
  CLUS_2           49                 80
  CLUS_3           36                 89
D39V4, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           12                 86
  CLUS_2           28                 55
  CLUS_3           17                 52
D39V5, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           17                 43
  CLUS_2           12                 61
  CLUS_3           15                 46
D39V6, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           10                 48
  CLUS_2           19                 28
  CLUS_3            9                 40
  CLUS_4            6                 34
D39V7, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           17                 60
  CLUS_2           35                 67
  CLUS_3           21                 90
  CLUS_4            7                 48
D39V8, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           36                 71
  CLUS_2           13                 57
  CLUS_3           31                137
D39V9, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           30                103
  CLUS_2           42                124
  CLUS_3           21                 47
D39V10, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           36                 77
  CLUS_2           32                149
  CLUS_3           25                 48

Clustering(40) Variable = Xq gain
D40V1, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           2                41
  CLUS_2           1                49
  CLUS_3           0                30
  CLUS_4           1                30
D40V2, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           1                27
  CLUS_2           1                53
  CLUS_3           2                70
D40V3, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           1               142
  CLUS_2           3               126
  CLUS_3           7               118
D40V4, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                98
  CLUS_2           2                81
  CLUS_3           3                66
D40V5, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           3                57
  CLUS_2           1                72
  CLUS_3           1                60
D40V6, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           3                55
  CLUS_2           1                46
  CLUS_3           1                48
  CLUS_4           0                40
D40V7, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           1                76
  CLUS_2           2               100
  CLUS_3           4               107
  CLUS_4           1                54
D40V8, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           2               105
  CLUS_2           4                66
  CLUS_3           2               166
D40V9, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           3               130
  CLUS_2           7               159
  CLUS_3           0                68
D40V10, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           5               108
  CLUS_2           5               176
  CLUS_3           0                73

Clustering(41) Variable = 1p loss
D41V1, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           4                39
  CLUS_2          15                35
  CLUS_3           2                28
  CLUS_4           1                30
D41V2, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           2                26
  CLUS_2          16                38
  CLUS_3           4                68
D41V3, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           5               138
  CLUS_2          43                86
  CLUS_3          11               114
D41V4, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           3                95
  CLUS_2          24                59
  CLUS_3           9                60
D41V5, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          11                49
  CLUS_2           9                64
  CLUS_3          14                47
D41V6, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          11                47
  CLUS_2          13                34
  CLUS_3           3                46
  CLUS_4           7                33
D41V7, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           6                71
  CLUS_2          32                70
  CLUS_3           9               102
  CLUS_4           3                52
D41V8, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          32                75
  CLUS_2           6                64
  CLUS_3          12               156
D41V9, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          19               114
  CLUS_2          22               144
  CLUS_3          13                55
D41V10, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          17                96
  CLUS_2          19               162
  CLUS_3          18                55

Clustering(42) Variable = 1q loss
D42V1, multiclass
[1] "Remove cluster labels:" "1Q LOSS CNV"           
clus
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                2               152 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-21-1070 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1077        TCGA-21-1078        TCGA-21-1079        TCGA-21-1080 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1081        TCGA-21-1082        TCGA-21-1083        TCGA-22-0940 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4594        TCGA-22-4595        TCGA-22-4596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4589 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5240        TCGA-34-5241 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-39-5011        TCGA-39-5016        TCGA-39-5021 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5035        TCGA-39-5036        TCGA-39-5037 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-46-3765        TCGA-46-3766        TCGA-46-3767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-46-3768        TCGA-46-3769        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-60-2695        TCGA-60-2696 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-63-5131        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
D42V2, multiclass
[1] "Remove cluster labels:" "1Q LOSS CNV"           
clus
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
                2               152 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-21-1070 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1077        TCGA-21-1078        TCGA-21-1079        TCGA-21-1080 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1081        TCGA-21-1082        TCGA-21-1083        TCGA-22-0940 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4594        TCGA-22-4595        TCGA-22-4596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4589 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5240        TCGA-34-5241 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-39-5011        TCGA-39-5016        TCGA-39-5021 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5035        TCGA-39-5036        TCGA-39-5037 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-46-3765        TCGA-46-3766        TCGA-46-3767 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-46-3768        TCGA-46-3769        TCGA-51-4079        TCGA-51-4080 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-60-2695        TCGA-60-2696 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-63-5131        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
D42V3, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           1               142
  CLUS_2           3               126
  CLUS_3           5               120
D42V4, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           1                97
  CLUS_2           4                79
  CLUS_3           3                66
D42V5, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3                57
  CLUS_2           2                71
  CLUS_3           2                59
D42V6, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3                55
  CLUS_2           3                44
  CLUS_3           0                49
  CLUS_4           1                39
D42V7, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3                74
  CLUS_2           2               100
  CLUS_3           2               109
  CLUS_4           0                55
D42V8, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           2               105
  CLUS_2           1                69
  CLUS_3           4               164
D42V9, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3               130
  CLUS_2           5               161
  CLUS_3           1                67
D42V10, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           5               108
  CLUS_2           2               179
  CLUS_3           2                71

Clustering(43) Variable = 2p loss
D43V1, multiclass
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                2               152 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-21-1070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1077        TCGA-21-1078        TCGA-21-1079        TCGA-21-1080 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1081        TCGA-21-1083        TCGA-22-0940        TCGA-22-0944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1000        TCGA-22-1002        TCGA-22-1005        TCGA-22-1011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1012        TCGA-22-1016        TCGA-22-1017        TCGA-22-4591 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4594        TCGA-22-4595        TCGA-22-4596        TCGA-22-4599 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4601        TCGA-22-4604        TCGA-22-4607        TCGA-22-4613 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4589        TCGA-34-2596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5240        TCGA-34-5241        TCGA-37-3783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3789        TCGA-37-3792        TCGA-37-4129        TCGA-37-4130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5021        TCGA-39-5029 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-46-3765        TCGA-46-3766 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-3767        TCGA-46-3768        TCGA-46-3769        TCGA-51-4079 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-51-4080        TCGA-51-4081        TCGA-60-2695        TCGA-60-2696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-5131        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
D43V2, multiclass
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                2               152 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-21-1070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1077        TCGA-21-1078        TCGA-21-1079        TCGA-21-1080 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1081        TCGA-21-1083        TCGA-22-0940        TCGA-22-0944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1000        TCGA-22-1002        TCGA-22-1005        TCGA-22-1011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1012        TCGA-22-1016        TCGA-22-1017        TCGA-22-4591 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4594        TCGA-22-4595        TCGA-22-4596        TCGA-22-4599 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4601        TCGA-22-4604        TCGA-22-4607        TCGA-22-4613 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4589        TCGA-34-2596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2600        TCGA-34-2604        TCGA-34-2605        TCGA-34-2608 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2609        TCGA-34-5240        TCGA-34-5241        TCGA-37-3783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3789        TCGA-37-3792        TCGA-37-4129        TCGA-37-4130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4132        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5011        TCGA-39-5016        TCGA-39-5021        TCGA-39-5029 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5037        TCGA-43-2576        TCGA-43-2578        TCGA-43-2581 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-46-3765        TCGA-46-3766 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-3767        TCGA-46-3768        TCGA-46-3769        TCGA-51-4079 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-51-4080        TCGA-51-4081        TCGA-60-2695        TCGA-60-2696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2706        TCGA-60-2707        TCGA-60-2708 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2710        TCGA-60-2711        TCGA-60-2712        TCGA-60-2713 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2714        TCGA-60-2715        TCGA-60-2716        TCGA-60-2719 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-5131        TCGA-66-2727        TCGA-66-2734        TCGA-66-2737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2753        TCGA-66-2754 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2755        TCGA-66-2756        TCGA-66-2757        TCGA-66-2758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2759        TCGA-66-2763        TCGA-66-2765        TCGA-66-2766 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2767        TCGA-66-2768        TCGA-66-2769        TCGA-66-2770 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2786        TCGA-66-2787        TCGA-66-2788 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2789        TCGA-66-2790        TCGA-66-2791        TCGA-66-2792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
D43V3, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           0               143
  CLUS_2           1               128
  CLUS_3           3               122
D43V4, multiclass
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                2               248 
       TCGA-18-3417        TCGA-18-4721        TCGA-18-5592        TCGA-18-5595 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5784        TCGA-21-5786 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5787        TCGA-22-4593        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4605        TCGA-22-4609        TCGA-22-4613        TCGA-22-5471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5472        TCGA-22-5473        TCGA-22-5474        TCGA-22-5477 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5478        TCGA-22-5479        TCGA-22-5480        TCGA-22-5481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5483        TCGA-22-5485        TCGA-22-5489 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5491        TCGA-22-5492        TCGA-33-4566        TCGA-33-4582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4583        TCGA-33-4586        TCGA-33-4587        TCGA-33-4589 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-6737        TCGA-33-6738        TCGA-34-5231        TCGA-34-5232 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-34-8454        TCGA-34-8455        TCGA-34-8456 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5011        TCGA-39-5016        TCGA-39-5019 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5021        TCGA-39-5022        TCGA-39-5024        TCGA-39-5027 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5028        TCGA-39-5029        TCGA-39-5030        TCGA-39-5031 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5034        TCGA-39-5035        TCGA-39-5036        TCGA-39-5037 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5039        TCGA-39-5040        TCGA-43-5668        TCGA-43-5670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6143        TCGA-43-6647        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6773        TCGA-43-7656        TCGA-43-7657        TCGA-43-7658 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8115        TCGA-43-8116        TCGA-43-8118        TCGA-46-6025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-52-7622        TCGA-52-7809        TCGA-52-7810 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7811        TCGA-52-7812        TCGA-56-5897        TCGA-56-5898 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-56-7221        TCGA-56-7222 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7223        TCGA-56-7579        TCGA-56-7580        TCGA-56-7582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7731        TCGA-56-7822        TCGA-56-8082 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8083        TCGA-56-8201        TCGA-56-8304        TCGA-56-8305 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8307        TCGA-56-8308        TCGA-56-8309        TCGA-56-8503 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8504        TCGA-56-8622        TCGA-56-8623        TCGA-56-8624 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8625        TCGA-56-8626        TCGA-56-8628        TCGA-56-8629 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8386        TCGA-58-8387        TCGA-58-8388        TCGA-58-8390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8391        TCGA-58-8392        TCGA-58-8393        TCGA-60-2697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2703        TCGA-60-2704        TCGA-60-2709        TCGA-63-5128 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-5131        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-7022        TCGA-63-7023        TCGA-68-7755        TCGA-68-7756 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-70-6722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-70-6723        TCGA-77-6842        TCGA-77-6843        TCGA-77-6844 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6845        TCGA-77-7138        TCGA-77-7139        TCGA-77-7140 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7141        TCGA-77-7142        TCGA-77-7335        TCGA-77-7337 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7338        TCGA-77-7463        TCGA-77-7465        TCGA-77-8007 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8008        TCGA-77-8009        TCGA-77-8128        TCGA-77-8130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8131        TCGA-77-8133        TCGA-77-8136        TCGA-77-8138 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8140        TCGA-77-8143        TCGA-77-8144 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8145        TCGA-77-8148        TCGA-77-8150        TCGA-77-8153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-79-5596        TCGA-85-6175 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-85-7950        TCGA-85-8048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8072        TCGA-85-8276        TCGA-85-8277        TCGA-85-8287 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8288        TCGA-85-8350        TCGA-85-8351        TCGA-85-8353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8584        TCGA-85-8664 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8666        TCGA-85-A4JC        TCGA-85-A4PA        TCGA-85-A4QR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-6837        TCGA-90-7766        TCGA-90-7767        TCGA-90-7769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE        TCGA-92-7340 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-7341        TCGA-92-8063        TCGA-92-8064        TCGA-92-8065 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-94-7033        TCGA-94-7557        TCGA-94-7943        TCGA-94-8035 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-94-8490        TCGA-94-8491        TCGA-94-A4VJ        TCGA-96-7544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-7545        TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-A4JL        TCGA-98-7454        TCGA-98-8020        TCGA-98-8021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8022        TCGA-98-8023        TCGA-L3-A4E7        TCGA-LA-A446 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
D43V5, multiclass
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                1               193 
       TCGA-18-4721        TCGA-18-5592        TCGA-18-5595        TCGA-21-1070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1083        TCGA-21-5782        TCGA-21-5784        TCGA-21-5786 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5787        TCGA-22-0940        TCGA-22-1000        TCGA-22-1011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4596        TCGA-22-4605        TCGA-22-4607 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4609        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4586 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2604        TCGA-34-2605        TCGA-34-2608        TCGA-34-2609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5231        TCGA-34-5232        TCGA-34-5234        TCGA-34-5236 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5239        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3789        TCGA-37-3792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5011        TCGA-39-5016        TCGA-39-5019 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5021        TCGA-39-5022        TCGA-39-5024        TCGA-39-5027 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5028        TCGA-39-5029        TCGA-39-5030        TCGA-39-5031 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5034        TCGA-39-5035        TCGA-39-5037        TCGA-39-5040 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-2578        TCGA-43-2581        TCGA-43-3394        TCGA-43-5668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7658        TCGA-46-6025        TCGA-46-6026 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7810        TCGA-52-7811        TCGA-52-7812        TCGA-56-5897 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7730        TCGA-60-2695        TCGA-60-2696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-5131        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-7022        TCGA-63-7023        TCGA-66-2727        TCGA-66-2737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2773        TCGA-66-2777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2788        TCGA-66-2790        TCGA-66-2791 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7756 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-77-6842        TCGA-77-6843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7139        TCGA-77-7141 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7142        TCGA-77-7335        TCGA-77-7337        TCGA-77-7338 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7463        TCGA-77-7465        TCGA-79-5596        TCGA-85-6175 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-85-7950        TCGA-90-6837 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-92-7340 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-94-7033        TCGA-94-7557        TCGA-94-7943        TCGA-96-7544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-7454 
"2P LOSS WILD-TYPE" 
D43V6, multiclass
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                1               193 
       TCGA-18-4721        TCGA-18-5592        TCGA-18-5595        TCGA-21-1070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1083        TCGA-21-5782        TCGA-21-5784        TCGA-21-5786 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5787        TCGA-22-0940        TCGA-22-1000        TCGA-22-1011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4596        TCGA-22-4605        TCGA-22-4607 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4609        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4532 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4586 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-34-2596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2604        TCGA-34-2605        TCGA-34-2608        TCGA-34-2609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5231        TCGA-34-5232        TCGA-34-5234        TCGA-34-5236 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5239        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3789        TCGA-37-3792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5011        TCGA-39-5016        TCGA-39-5019 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5021        TCGA-39-5022        TCGA-39-5024        TCGA-39-5027 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5028        TCGA-39-5029        TCGA-39-5030        TCGA-39-5031 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5034        TCGA-39-5035        TCGA-39-5037        TCGA-39-5040 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-2578        TCGA-43-2581        TCGA-43-3394        TCGA-43-5668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6770        TCGA-43-6771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7658        TCGA-46-6025        TCGA-46-6026 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7810        TCGA-52-7811        TCGA-52-7812        TCGA-56-5897 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7730        TCGA-60-2695        TCGA-60-2696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-5131        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-7022        TCGA-63-7023        TCGA-66-2727        TCGA-66-2737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2773        TCGA-66-2777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2788        TCGA-66-2790        TCGA-66-2791 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7756 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-77-6842        TCGA-77-6843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7139        TCGA-77-7141 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7142        TCGA-77-7335        TCGA-77-7337        TCGA-77-7338 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7463        TCGA-77-7465        TCGA-79-5596        TCGA-85-6175 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-85-7950        TCGA-90-6837 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-92-7340 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-94-7033        TCGA-94-7557        TCGA-94-7943        TCGA-96-7544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-7454 
"2P LOSS WILD-TYPE" 
D43V7, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1                76
  CLUS_2           1               101
  CLUS_3           1               110
  CLUS_4           1                54
D43V8, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1               106
  CLUS_2           1                69
  CLUS_3           2               166
D43V9, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1               132
  CLUS_2           1               165
  CLUS_3           1                67
D43V10, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           0               113
  CLUS_2           2               179
  CLUS_3           1                72

Clustering(44) Variable = 2q loss
D44V1, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           2                41
  CLUS_2           1                49
  CLUS_3           0                30
  CLUS_4           2                29
D44V2, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                27
  CLUS_2           2                52
  CLUS_3           2                70
D44V3, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           0               143
  CLUS_2           5               124
  CLUS_3           6               119
D44V4, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                97
  CLUS_2           1                82
  CLUS_3           4                65
D44V5, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           2                58
  CLUS_2           1                72
  CLUS_3           2                59
D44V6, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           3                55
  CLUS_2           1                46
  CLUS_3           1                48
  CLUS_4           0                40
D44V7, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           2                75
  CLUS_2           2               100
  CLUS_3           6               105
  CLUS_4           0                55
D44V8, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           3               104
  CLUS_2           4                66
  CLUS_3           3               165
D44V9, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           6               127
  CLUS_2           2               164
  CLUS_3           1                67
D44V10, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1               112
  CLUS_2           6               175
  CLUS_3           2                71

Clustering(45) Variable = 3p loss
D45V1, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          21                22
  CLUS_2          24                26
  CLUS_3           6                24
  CLUS_4          13                18
D45V2, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          10                18
  CLUS_2          26                28
  CLUS_3          28                44
D45V3, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          35               108
  CLUS_2          63                66
  CLUS_3          63                62
D45V4, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          23                75
  CLUS_2          41                42
  CLUS_3          36                33
D45V5, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          27                33
  CLUS_2          30                43
  CLUS_3          21                40
D45V6, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          29                29
  CLUS_2          19                28
  CLUS_3          17                32
  CLUS_4          13                27
D45V7, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          31                46
  CLUS_2          50                52
  CLUS_3          47                64
  CLUS_4          20                35
D45V8, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          53                54
  CLUS_2          36                34
  CLUS_3          59               109
D45V9, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          53                80
  CLUS_2          66               100
  CLUS_3          29                39
D45V10, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          42                71
  CLUS_2          73               108
  CLUS_3          33                40

Clustering(46) Variable = 3q loss
D46V1, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           1                42
  CLUS_2           6                44
  CLUS_3           4                26
  CLUS_4           3                28
D46V2, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           3                25
  CLUS_2           6                48
  CLUS_3           5                67
D46V3, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           4               139
  CLUS_2          13               116
  CLUS_3           9               116
D46V4, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           2                96
  CLUS_2           7                76
  CLUS_3           2                67
D46V5, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           3                57
  CLUS_2           6                67
  CLUS_3           3                58
D46V6, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           4                54
  CLUS_2           3                44
  CLUS_3           3                46
  CLUS_4           2                38
D46V7, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           4                73
  CLUS_2          10                92
  CLUS_3           8               103
  CLUS_4           3                52
D46V8, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1          12                95
  CLUS_2           5                65
  CLUS_3           8               160
D46V9, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1          11               122
  CLUS_2          10               156
  CLUS_3           3                65
D46V10, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           7               106
  CLUS_2          12               169
  CLUS_3           5                68

Clustering(47) Variable = 4p loss
D47V1, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          21                22
  CLUS_2          27                23
  CLUS_3           9                21
  CLUS_4          12                19
D47V2, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          11                17
  CLUS_2          32                22
  CLUS_3          26                46
D47V3, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          35               108
  CLUS_2          81                48
  CLUS_3          48                77
D47V4, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          17                81
  CLUS_2          46                37
  CLUS_3          34                35
D47V5, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          34                26
  CLUS_2          26                47
  CLUS_3          28                33
D47V6, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          29                29
  CLUS_2          25                22
  CLUS_3          19                30
  CLUS_4          15                25
D47V7, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          31                46
  CLUS_2          55                47
  CLUS_3          42                69
  CLUS_4          17                38
D47V8, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          58                49
  CLUS_2          28                42
  CLUS_3          59               109
D47V9, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          63                70
  CLUS_2          62               104
  CLUS_3          26                42
D47V10, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          53                60
  CLUS_2          66               115
  CLUS_3          32                41

Clustering(48) Variable = 4q loss
D48V1, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          13                30
  CLUS_2          27                23
  CLUS_3           6                24
  CLUS_4          15                16
D48V2, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          12                16
  CLUS_2          31                23
  CLUS_3          18                54
D48V3, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          28               115
  CLUS_2          76                53
  CLUS_3          39                86
D48V4, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          15                83
  CLUS_2          40                43
  CLUS_3          29                40
D48V5, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          32                28
  CLUS_2          20                53
  CLUS_3          22                39
D48V6, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          28                30
  CLUS_2          20                27
  CLUS_3          14                35
  CLUS_4          12                28
D48V7, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          17                60
  CLUS_2          55                47
  CLUS_3          39                72
  CLUS_4          14                41
D48V8, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          55                52
  CLUS_2          28                42
  CLUS_3          42               126
D48V9, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          54                79
  CLUS_2          51               115
  CLUS_3          25                43
D48V10, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          46                67
  CLUS_2          52               129
  CLUS_3          32                41

Clustering(49) Variable = 5p loss
D49V1, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           1                42
  CLUS_2           4                46
  CLUS_3           0                30
  CLUS_4           4                27
D49V2, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           2                26
  CLUS_2           5                49
  CLUS_3           2                70
D49V3, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           3               140
  CLUS_2          10               119
  CLUS_3          11               114
D49V4, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           3                95
  CLUS_2           4                79
  CLUS_3           7                62
D49V5, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           7                53
  CLUS_2           3                70
  CLUS_3           3                58
D49V6, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           3                55
  CLUS_2           6                41
  CLUS_3           1                48
  CLUS_4           3                37
D49V7, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           3                74
  CLUS_2           6                96
  CLUS_3           7               104
  CLUS_4           4                51
D49V8, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           6               101
  CLUS_2           4                66
  CLUS_3          10               158
D49V9, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           7               126
  CLUS_2          10               156
  CLUS_3           5                63
D49V10, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           6               107
  CLUS_2          11               170
  CLUS_3           5                68

Clustering(50) Variable = 5q loss
D50V1, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          16                27
  CLUS_2          20                30
  CLUS_3           6                24
  CLUS_4          13                18
D50V2, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          10                18
  CLUS_2          24                30
  CLUS_3          21                51
D50V3, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          24               119
  CLUS_2          62                67
  CLUS_3          60                65
D50V4, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          15                83
  CLUS_2          35                48
  CLUS_3          41                28
D50V5, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          26                34
  CLUS_2          18                55
  CLUS_3          24                37
D50V6, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          19                39
  CLUS_2          21                26
  CLUS_3          11                38
  CLUS_4          17                23
D50V7, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          27                50
  CLUS_2          46                56
  CLUS_3          41                70
  CLUS_4          13                42
D50V8, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          46                61
  CLUS_2          24                46
  CLUS_3          57               111
D50V9, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          43                90
  CLUS_2          60               106
  CLUS_3          30                38
D50V10, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          44                69
  CLUS_2          54               127
  CLUS_3          35                38

Clustering(51) Variable = 6p loss
D51V1, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           1                42
  CLUS_2           8                42
  CLUS_3           1                29
  CLUS_4           2                29
D51V2, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           1                27
  CLUS_2           9                45
  CLUS_3           2                70
D51V3, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           5               138
  CLUS_2          23               106
  CLUS_3           7               118
D51V4, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           4                94
  CLUS_2          15                68
  CLUS_3           6                63
D51V5, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           9                51
  CLUS_2           6                67
  CLUS_3           2                59
D51V6, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          10                48
  CLUS_2           1                46
  CLUS_3           2                47
  CLUS_4           4                36
D51V7, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           5                72
  CLUS_2          20                82
  CLUS_3           7               104
  CLUS_4           2                53
D51V8, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          21                86
  CLUS_2           6                64
  CLUS_3           7               161
D51V9, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          10               123
  CLUS_2          14               152
  CLUS_3           6                62
D51V10, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           8               105
  CLUS_2          15               166
  CLUS_3           7                66

Clustering(52) Variable = 6q loss
D52V1, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           3                40
  CLUS_2           9                41
  CLUS_3           1                29
  CLUS_4           2                29
D52V2, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           2                26
  CLUS_2          10                44
  CLUS_3           3                69
D52V3, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           8               135
  CLUS_2          21               108
  CLUS_3          11               114
D52V4, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           6                92
  CLUS_2          14                69
  CLUS_3           9                60
D52V5, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          11                49
  CLUS_2           5                68
  CLUS_3           5                56
D52V6, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          11                47
  CLUS_2           4                43
  CLUS_3           3                46
  CLUS_4           3                37
D52V7, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           6                71
  CLUS_2          17                85
  CLUS_3           8               103
  CLUS_4           4                51
D52V8, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          17                90
  CLUS_2           7                63
  CLUS_3          11               157
D52V9, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          13               120
  CLUS_2          16               150
  CLUS_3           6                62
D52V10, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           8               105
  CLUS_2          20               161
  CLUS_3           7                66

Clustering(53) Variable = 7p loss
D53V1, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           3                40
  CLUS_2           4                46
  CLUS_3           0                30
  CLUS_4           3                28
D53V2, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           2                26
  CLUS_2           4                50
  CLUS_3           4                68
D53V3, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           2               141
  CLUS_2           7               122
  CLUS_3          14               111
D53V4, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           1                97
  CLUS_2           8                75
  CLUS_3           6                63
D53V5, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           5                55
  CLUS_2           4                69
  CLUS_3           2                59
D53V6, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           2                56
  CLUS_2           5                42
  CLUS_3           4                45
  CLUS_4           0                40
D53V7, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           3                74
  CLUS_2           6                96
  CLUS_3           9               102
  CLUS_4           4                51
D53V8, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           5               102
  CLUS_2           5                65
  CLUS_3          12               156
D53V9, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1          12               121
  CLUS_2           7               159
  CLUS_3           3                65
D53V10, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           5               108
  CLUS_2          13               168
  CLUS_3           4                69

Clustering(54) Variable = 7q loss
D54V1, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           3                40
  CLUS_2           1                49
  CLUS_3           0                30
  CLUS_4           1                30
D54V2, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           1                27
  CLUS_2           1                53
  CLUS_3           3                69
D54V3, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           3               140
  CLUS_2           2               127
  CLUS_3           8               117
D54V4, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           1                97
  CLUS_2           4                79
  CLUS_3           2                67
D54V5, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           2                58
  CLUS_2           2                71
  CLUS_3           2                59
D54V6, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           2                56
  CLUS_2           2                45
  CLUS_3           2                47
  CLUS_4           0                40
D54V7, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           4                73
  CLUS_2           0               102
  CLUS_3           6               105
  CLUS_4           2                53
D54V8, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           0               107
  CLUS_2           4                66
  CLUS_3           8               160
D54V9, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           6               127
  CLUS_2           5               161
  CLUS_3           0                68
D54V10, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           1               112
  CLUS_2           9               172
  CLUS_3           1                72

Clustering(55) Variable = 8p loss
D55V1, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          13                30
  CLUS_2          13                37
  CLUS_3           4                26
  CLUS_4           9                22
D55V2, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           9                19
  CLUS_2          14                40
  CLUS_3          16                56
D55V3, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          23               120
  CLUS_2          34                95
  CLUS_3          60                65
D55V4, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          16                82
  CLUS_2          31                52
  CLUS_3          27                42
D55V5, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          22                38
  CLUS_2          21                52
  CLUS_3          12                49
D55V6, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          18                40
  CLUS_2          11                36
  CLUS_3          15                34
  CLUS_4          11                29
D55V7, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          24                53
  CLUS_2          31                71
  CLUS_3          33                78
  CLUS_4          11                44
D55V8, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          35                72
  CLUS_2          23                47
  CLUS_3          41               127
D55V9, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          39                94
  CLUS_2          56               110
  CLUS_3          17                51
D55V10, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          38                75
  CLUS_2          54               127
  CLUS_3          20                53

Clustering(56) Variable = 8q loss
D56V1, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           0                43
  CLUS_2           1                49
  CLUS_3           0                30
  CLUS_4           2                29
D56V2, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           2                26
  CLUS_2           1                53
  CLUS_3           0                72
D56V3, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           1               142
  CLUS_2           3               126
  CLUS_3           8               117
D56V4, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           0                98
  CLUS_2           5                78
  CLUS_3           3                66
D56V5, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           5                55
  CLUS_2           1                72
  CLUS_3           1                60
D56V6, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           4                54
  CLUS_2           2                45
  CLUS_3           0                49
  CLUS_4           1                39
D56V7, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           1                76
  CLUS_2           3                99
  CLUS_3           5               106
  CLUS_4           0                55
D56V8, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           2               105
  CLUS_2           6                64
  CLUS_3           1               167
D56V9, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           3               130
  CLUS_2           6               160
  CLUS_3           3                65
D56V10, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           2               111
  CLUS_2           7               174
  CLUS_3           3                70

Clustering(57) Variable = 9p loss
D57V1, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          25                18
  CLUS_2          21                29
  CLUS_3           9                21
  CLUS_4          13                18
D57V2, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          11                17
  CLUS_2          23                31
  CLUS_3          34                38
D57V3, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          28               115
  CLUS_2          49                80
  CLUS_3          87                38
D57V4, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          20                78
  CLUS_2          34                49
  CLUS_3          45                24
D57V5, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          25                35
  CLUS_2          30                43
  CLUS_3          26                35
D57V6, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          21                37
  CLUS_2          24                23
  CLUS_3          20                29
  CLUS_4          16                24
D57V7, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          34                43
  CLUS_2          37                65
  CLUS_3          52                59
  CLUS_4          19                36
D57V8, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          37                70
  CLUS_2          33                37
  CLUS_3          72                96
D57V9, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          58                75
  CLUS_2          70                96
  CLUS_3          23                45
D57V10, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          52                61
  CLUS_2          72               109
  CLUS_3          27                46

Clustering(58) Variable = 9q loss
D58V1, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          19                24
  CLUS_2           6                44
  CLUS_3           8                22
  CLUS_4          11                20
D58V2, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          10                18
  CLUS_2           7                47
  CLUS_3          27                45
D58V3, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          20               123
  CLUS_2          18               111
  CLUS_3          65                60
D58V4, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          17                81
  CLUS_2          13                70
  CLUS_3          32                37
D58V5, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          16                44
  CLUS_2          20                53
  CLUS_3          16                45
D58V6, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          13                45
  CLUS_2          15                32
  CLUS_3          16                33
  CLUS_4           8                32
D58V7, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          22                55
  CLUS_2          10                92
  CLUS_3          41                70
  CLUS_4          15                40
D58V8, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          11                96
  CLUS_2          26                44
  CLUS_3          51               117
D58V9, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          35                98
  CLUS_2          48               118
  CLUS_3          10                58
D58V10, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          38                75
  CLUS_2          45               136
  CLUS_3          10                63

Clustering(59) Variable = 10p loss
D59V1, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            8                 35
  CLUS_2           15                 35
  CLUS_3            2                 28
  CLUS_4            9                 22
D59V2, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            5                 23
  CLUS_2           17                 37
  CLUS_3           12                 60
D59V3, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            8                135
  CLUS_2           44                 85
  CLUS_3           35                 90
D59V4, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            8                 90
  CLUS_2           32                 51
  CLUS_3           15                 54
D59V5, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           12                 48
  CLUS_2           14                 59
  CLUS_3           12                 49
D59V6, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2           15                 32
  CLUS_3            7                 42
  CLUS_4            6                 34
D59V7, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           14                 63
  CLUS_2           37                 65
  CLUS_3           20                 91
  CLUS_4            6                 49
D59V8, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           38                 69
  CLUS_2           16                 54
  CLUS_3           23                145
D59V9, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           25                108
  CLUS_2           32                134
  CLUS_3           22                 46
D59V10, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           26                 87
  CLUS_2           26                155
  CLUS_3           27                 46

Clustering(60) Variable = 10q loss
D60V1, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            6                 37
  CLUS_2           18                 32
  CLUS_3            2                 28
  CLUS_4            6                 25
D60V2, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            5                 23
  CLUS_2           21                 33
  CLUS_3            6                 66
D60V3, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            7                136
  CLUS_2           49                 80
  CLUS_3           35                 90
D60V4, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           10                 88
  CLUS_2           31                 52
  CLUS_3           17                 52
D60V5, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           15                 45
  CLUS_2           10                 63
  CLUS_3           11                 50
D60V6, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2           15                 32
  CLUS_3            3                 46
  CLUS_4            8                 32
D60V7, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           11                 66
  CLUS_2           38                 64
  CLUS_3           23                 88
  CLUS_4            6                 49
D60V8, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           40                 67
  CLUS_2           17                 53
  CLUS_3           21                147
D60V9, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           22                111
  CLUS_2           38                128
  CLUS_3           25                 43
D60V10, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           26                 87
  CLUS_2           30                151
  CLUS_3           29                 44

Clustering(61) Variable = 11p loss
D61V1, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           11                 32
  CLUS_2            3                 47
  CLUS_3            1                 29
  CLUS_4            5                 26
D61V2, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            6                 22
  CLUS_2            4                 50
  CLUS_3           10                 62
D61V3, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            9                134
  CLUS_2           20                109
  CLUS_3           30                 95
D61V4, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            7                 91
  CLUS_2           14                 69
  CLUS_3           18                 51
D61V5, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           12                 48
  CLUS_2           10                 63
  CLUS_3            4                 57
D61V6, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           12                 46
  CLUS_2            3                 44
  CLUS_3            9                 40
  CLUS_4            2                 38
D61V7, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           13                 64
  CLUS_2           11                 91
  CLUS_3           25                 86
  CLUS_4            4                 51
D61V8, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           15                 92
  CLUS_2           16                 54
  CLUS_3           22                146
D61V9, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           23                110
  CLUS_2           27                139
  CLUS_3            6                 62
D61V10, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           17                 96
  CLUS_2           31                150
  CLUS_3            8                 65

Clustering(62) Variable = 11q loss
D62V1, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            3                 40
  CLUS_2            3                 47
  CLUS_3            0                 30
  CLUS_4            3                 28
D62V2, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            3                 25
  CLUS_2            3                 51
  CLUS_3            3                 69
D62V3, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            2                141
  CLUS_2           20                109
  CLUS_3           20                105
D62V4, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            5                 93
  CLUS_2           10                 73
  CLUS_3           14                 55
D62V5, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            6                 54
  CLUS_2            3                 70
  CLUS_3            1                 60
D62V6, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            3                 55
  CLUS_2            4                 43
  CLUS_3            3                 46
  CLUS_4            0                 40
D62V7, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            4                 73
  CLUS_2           10                 92
  CLUS_3           17                 94
  CLUS_4            1                 54
D62V8, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1           11                 96
  CLUS_2           11                 59
  CLUS_3           10                158
D62V9, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            8                125
  CLUS_2           25                141
  CLUS_3            7                 61
D62V10, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1           18                 95
  CLUS_2           16                165
  CLUS_3            6                 67

Clustering(63) Variable = 12p loss
D63V1, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 2                152 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1017         TCGA-22-4591 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4594         TCGA-22-4595         TCGA-22-4596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-33-4532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4589 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-37-3783 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-39-5011         TCGA-39-5016 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5029         TCGA-39-5030 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-43-2576         TCGA-43-2578 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2581         TCGA-43-3394         TCGA-43-3920 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-3765         TCGA-46-3766         TCGA-46-3767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-3769         TCGA-51-4079 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-56-1622 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2695         TCGA-60-2696         TCGA-60-2698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2706         TCGA-60-2707         TCGA-60-2708 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-5128         TCGA-63-5131         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
D63V2, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 2                152 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1017         TCGA-22-4591 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4594         TCGA-22-4595         TCGA-22-4596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-33-4532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4589 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5240         TCGA-34-5241         TCGA-37-3783 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-39-5011         TCGA-39-5016 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5029         TCGA-39-5030 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5037         TCGA-43-2576         TCGA-43-2578 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2581         TCGA-43-3394         TCGA-43-3920 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-3765         TCGA-46-3766         TCGA-46-3767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-3768         TCGA-46-3769         TCGA-51-4079 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-56-1622 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2695         TCGA-60-2696         TCGA-60-2698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2706         TCGA-60-2707         TCGA-60-2708 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-5128         TCGA-63-5131         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
D63V3, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            3                140
  CLUS_2            0                129
  CLUS_3            4                121
D63V4, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                 97
  CLUS_2            1                 82
  CLUS_3            2                 67
D63V5, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 1                193 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1078 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1082         TCGA-21-1083         TCGA-21-5782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5784         TCGA-21-5786         TCGA-21-5787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-1000         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4596         TCGA-22-4605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-5471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5482         TCGA-22-5483 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5485         TCGA-22-5489         TCGA-22-5491 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5492         TCGA-33-4532         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2604         TCGA-34-2605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5241         TCGA-34-5927 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-5819 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5037         TCGA-39-5040 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-5668         TCGA-43-5670         TCGA-43-6143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-7656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7658         TCGA-46-6025         TCGA-46-6026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7730         TCGA-60-2695         TCGA-60-2696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2708 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2709         TCGA-60-2710         TCGA-60-2711 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2724         TCGA-60-2725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-6202         TCGA-63-7020         TCGA-63-7021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-7022         TCGA-63-7023         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2737         TCGA-66-2758         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2781         TCGA-66-2782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2790         TCGA-66-2791         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-70-6722         TCGA-70-6723         TCGA-77-6842 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7141         TCGA-77-7142 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7335         TCGA-77-7337         TCGA-77-7338 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7463         TCGA-77-7465         TCGA-79-5596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6175         TCGA-85-6560         TCGA-85-6561 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6798         TCGA-85-7696         TCGA-85-7697 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7698         TCGA-85-7699         TCGA-85-7710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7843         TCGA-85-7844         TCGA-85-7950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-94-7033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7557         TCGA-94-7943         TCGA-96-7544 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-7454 
"12P LOSS WILD-TYPE" 
D63V6, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 1                193 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1078 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1082         TCGA-21-1083         TCGA-21-5782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5784         TCGA-21-5786         TCGA-21-5787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-1000         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4596         TCGA-22-4605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-5471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5482         TCGA-22-5483 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5485         TCGA-22-5489         TCGA-22-5491 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5492         TCGA-33-4532         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2604         TCGA-34-2605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5241         TCGA-34-5927 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-5819 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5037         TCGA-39-5040 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-5668         TCGA-43-5670         TCGA-43-6143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-7656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7658         TCGA-46-6025         TCGA-46-6026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7730         TCGA-60-2695         TCGA-60-2696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2708 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2709         TCGA-60-2710         TCGA-60-2711 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2724         TCGA-60-2725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-6202         TCGA-63-7020         TCGA-63-7021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-7022         TCGA-63-7023         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2737         TCGA-66-2758         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2781         TCGA-66-2782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2790         TCGA-66-2791         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-70-6722         TCGA-70-6723         TCGA-77-6842 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7141         TCGA-77-7142 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7335         TCGA-77-7337         TCGA-77-7338 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7463         TCGA-77-7465         TCGA-79-5596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6175         TCGA-85-6560         TCGA-85-6561 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6798         TCGA-85-7696         TCGA-85-7697 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7698         TCGA-85-7699         TCGA-85-7710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7843         TCGA-85-7844         TCGA-85-7950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-94-7033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7557         TCGA-94-7943         TCGA-96-7544 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-7454 
"12P LOSS WILD-TYPE" 
D63V7, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                 76
  CLUS_2            0                102
  CLUS_3            3                108
  CLUS_4            0                 55
D63V8, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                106
  CLUS_2            2                 68
  CLUS_3            1                167
D63V9, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                132
  CLUS_2            4                162
  CLUS_3            0                 68
D63V10, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            2                111
  CLUS_2            3                178
  CLUS_3            0                 73

Clustering(64) Variable = 12q loss
D64V1, multiclass
[1] "Remove cluster labels:" "12Q LOSS CNV"          
clus
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 1                153 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4594         TCGA-22-4595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4607         TCGA-22-4613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5240         TCGA-34-5241 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-39-5011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5021         TCGA-39-5029 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5034         TCGA-39-5035 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-43-2576 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-46-3765         TCGA-46-3766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-3767         TCGA-46-3768         TCGA-46-3769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2706         TCGA-60-2707 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2710         TCGA-60-2711 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2716         TCGA-60-2719 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
D64V2, multiclass
[1] "Remove cluster labels:" "12Q LOSS CNV"          
clus
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 1                153 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4594         TCGA-22-4595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4607         TCGA-22-4613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5240         TCGA-34-5241 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-39-5011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5021         TCGA-39-5029 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5034         TCGA-39-5035 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-43-2576 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-46-3765         TCGA-46-3766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-3767         TCGA-46-3768         TCGA-46-3769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2706         TCGA-60-2707 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2710         TCGA-60-2711 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2716         TCGA-60-2719 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
D64V3, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            2                141
  CLUS_2            2                127
  CLUS_3            5                120
D64V4, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                 97
  CLUS_2            3                 80
  CLUS_3            3                 66
D64V5, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                 59
  CLUS_2            0                 73
  CLUS_3            2                 59
D64V6, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                 57
  CLUS_2            2                 45
  CLUS_3            0                 49
  CLUS_4            0                 40
D64V7, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                 76
  CLUS_2            2                100
  CLUS_3            2                109
  CLUS_4            0                 55
D64V8, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            3                104
  CLUS_2            2                 68
  CLUS_3            0                168
D64V9, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                132
  CLUS_2            6                160
  CLUS_3            1                 67
D64V10, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            2                111
  CLUS_2            3                178
  CLUS_3            3                 70

Clustering(65) Variable = 13q loss
D65V1, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           20                 23
  CLUS_2           20                 30
  CLUS_3            7                 23
  CLUS_4           13                 18
D65V2, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           10                 18
  CLUS_2           24                 30
  CLUS_3           26                 46
D65V3, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           31                112
  CLUS_2           45                 84
  CLUS_3           70                 55
D65V4, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           21                 77
  CLUS_2           34                 49
  CLUS_3           35                 34
D65V5, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           28                 32
  CLUS_2           22                 51
  CLUS_3           22                 39
D65V6, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           25                 33
  CLUS_2           19                 28
  CLUS_3           14                 35
  CLUS_4           14                 26
D65V7, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           25                 52
  CLUS_2           42                 60
  CLUS_3           40                 71
  CLUS_4           23                 32
D65V8, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           44                 63
  CLUS_2           27                 43
  CLUS_3           59                109
D65V9, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           52                 81
  CLUS_2           61                105
  CLUS_3           24                 44
D65V10, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           51                 62
  CLUS_2           61                120
  CLUS_3           25                 48

Clustering(66) Variable = 14q loss
D66V1, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            1                 42
  CLUS_2           11                 39
  CLUS_3            3                 27
  CLUS_4           11                 20
D66V2, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            6                 22
  CLUS_2           14                 40
  CLUS_3            6                 66
D66V3, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           13                130
  CLUS_2           29                100
  CLUS_3           28                 97
D66V4, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           11                 87
  CLUS_2           16                 67
  CLUS_3           20                 49
D66V5, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           18                 42
  CLUS_2            9                 64
  CLUS_3           12                 49
D66V6, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           16                 42
  CLUS_2           13                 34
  CLUS_3            5                 44
  CLUS_4            5                 35
D66V7, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            3                 74
  CLUS_2           22                 80
  CLUS_3           33                 78
  CLUS_4            3                 52
D66V8, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           23                 84
  CLUS_2           26                 44
  CLUS_3           12                156
D66V9, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           23                110
  CLUS_2           25                141
  CLUS_3           15                 53
D66V10, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           19                 94
  CLUS_2           27                154
  CLUS_3           17                 56

Clustering(67) Variable = 15q loss
D67V1, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            6                 37
  CLUS_2            8                 42
  CLUS_3            4                 26
  CLUS_4            7                 24
D67V2, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            8                 20
  CLUS_2            9                 45
  CLUS_3            8                 64
D67V3, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           11                132
  CLUS_2           14                115
  CLUS_3           19                106
D67V4, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            5                 93
  CLUS_2            3                 80
  CLUS_3           13                 56
D67V5, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           14                 46
  CLUS_2            5                 68
  CLUS_3            4                 57
D67V6, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           13                 45
  CLUS_2            7                 40
  CLUS_3            3                 46
  CLUS_4            0                 40
D67V7, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            7                 70
  CLUS_2            9                 93
  CLUS_3           17                 94
  CLUS_4            5                 50
D67V8, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            8                 99
  CLUS_2           15                 55
  CLUS_3           15                153
D67V9, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           20                113
  CLUS_2           16                150
  CLUS_3            5                 63
D67V10, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           13                100
  CLUS_2           23                158
  CLUS_3            5                 68

Clustering(68) Variable = 16p loss
D68V1, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            4                 39
  CLUS_2            9                 41
  CLUS_3            2                 28
  CLUS_4            6                 25
D68V2, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            2                 26
  CLUS_2           10                 44
  CLUS_3            9                 63
D68V3, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            7                136
  CLUS_2           24                105
  CLUS_3           29                 96
D68V4, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           10                 88
  CLUS_2           12                 71
  CLUS_3           18                 51
D68V5, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           13                 47
  CLUS_2           10                 63
  CLUS_3            8                 53
D68V6, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           12                 46
  CLUS_2            9                 38
  CLUS_3            7                 42
  CLUS_4            3                 37
D68V7, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            8                 69
  CLUS_2           19                 83
  CLUS_3           22                 89
  CLUS_4            4                 51
D68V8, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           18                 89
  CLUS_2           15                 55
  CLUS_3           20                148
D68V9, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           20                113
  CLUS_2           27                139
  CLUS_3            8                 60
D68V10, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           24                 89
  CLUS_2           22                159
  CLUS_3            9                 64

Clustering(69) Variable = 16q loss
D69V1, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            9                 34
  CLUS_2           11                 39
  CLUS_3            1                 29
  CLUS_4            8                 23
D69V2, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            3                 25
  CLUS_2           14                 40
  CLUS_3           12                 60
D69V3, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           15                128
  CLUS_2           30                 99
  CLUS_3           35                 90
D69V4, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           15                 83
  CLUS_2           11                 72
  CLUS_3           23                 46
D69V5, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           16                 44
  CLUS_2           10                 63
  CLUS_3           11                 50
D69V6, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           13                 45
  CLUS_2           13                 34
  CLUS_3            5                 44
  CLUS_4            6                 34
D69V7, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           11                 66
  CLUS_2           21                 81
  CLUS_3           29                 82
  CLUS_4            6                 49
D69V8, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           22                 85
  CLUS_2           22                 48
  CLUS_3           23                145
D69V9, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           27                106
  CLUS_2           33                133
  CLUS_3           12                 56
D69V10, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           33                 80
  CLUS_2           25                156
  CLUS_3           14                 59

Clustering(70) Variable = 17p loss
D70V1, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           22                 21
  CLUS_2           16                 34
  CLUS_3            9                 21
  CLUS_4            8                 23
D70V2, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           10                 18
  CLUS_2           19                 35
  CLUS_3           26                 46
D70V3, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           39                104
  CLUS_2           41                 88
  CLUS_3           65                 60
D70V4, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           23                 75
  CLUS_2           26                 57
  CLUS_3           38                 31
D70V5, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           29                 31
  CLUS_2           20                 53
  CLUS_3           15                 46
D70V6, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           26                 32
  CLUS_2           16                 31
  CLUS_3           14                 35
  CLUS_4            8                 32
D70V7, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           30                 47
  CLUS_2           28                 74
  CLUS_3           45                 66
  CLUS_4           19                 36
D70V8, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           33                 74
  CLUS_2           31                 39
  CLUS_3           58                110
D70V9, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           56                 77
  CLUS_2           63                103
  CLUS_3           20                 48
D70V10, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           41                 72
  CLUS_2           75                106
  CLUS_3           23                 50

Clustering(71) Variable = 17q loss
D71V1, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            4                 39
  CLUS_2            1                 49
  CLUS_3            3                 27
  CLUS_4            1                 30
D71V2, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            2                 26
  CLUS_2            1                 53
  CLUS_3            6                 66
D71V3, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1           11                132
  CLUS_2            3                126
  CLUS_3           11                114
D71V4, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            6                 92
  CLUS_2            1                 82
  CLUS_3           10                 59
D71V5, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            4                 56
  CLUS_2            5                 68
  CLUS_3            1                 60
D71V6, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            4                 54
  CLUS_2            2                 45
  CLUS_3            2                 47
  CLUS_4            2                 38
D71V7, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            3                 74
  CLUS_2            2                100
  CLUS_3            9                102
  CLUS_4            7                 48
D71V8, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            2                105
  CLUS_2            4                 66
  CLUS_3           15                153
D71V9, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            8                125
  CLUS_2           11                155
  CLUS_3            6                 62
D71V10, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            6                107
  CLUS_2           13                168
  CLUS_3            6                 67

Clustering(72) Variable = 18p loss
D72V1, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            4                 39
  CLUS_2            8                 42
  CLUS_3            5                 25
  CLUS_4            2                 29
D72V2, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            4                 24
  CLUS_2            8                 46
  CLUS_3            7                 65
D72V3, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            9                134
  CLUS_2           11                118
  CLUS_3           23                102
D72V4, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            6                 92
  CLUS_2            5                 78
  CLUS_3           11                 58
D72V5, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            7                 53
  CLUS_2            3                 70
  CLUS_3            7                 54
D72V6, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            5                 53
  CLUS_2            5                 42
  CLUS_3            3                 46
  CLUS_4            4                 36
D72V7, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            7                 70
  CLUS_2            8                 94
  CLUS_3           12                 99
  CLUS_4           10                 45
D72V8, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            7                100
  CLUS_2            9                 61
  CLUS_3           21                147
D72V9, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           16                117
  CLUS_2           19                147
  CLUS_3            5                 63
D72V10, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           12                101
  CLUS_2           23                158
  CLUS_3            5                 68

Clustering(73) Variable = 18q loss
D73V1, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           11                 32
  CLUS_2           11                 39
  CLUS_3            7                 23
  CLUS_4            3                 28
D73V2, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            5                 23
  CLUS_2           11                 43
  CLUS_3           16                 56
D73V3, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           15                128
  CLUS_2           26                103
  CLUS_3           35                 90
D73V4, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           13                 85
  CLUS_2           15                 68
  CLUS_3           15                 54
D73V5, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           15                 45
  CLUS_2           15                 58
  CLUS_3            8                 53
D73V6, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2            9                 38
  CLUS_3           12                 37
  CLUS_4            7                 33
D73V7, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           15                 62
  CLUS_2           19                 83
  CLUS_3           18                 93
  CLUS_4           16                 39
D73V8, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           18                 89
  CLUS_2            7                 63
  CLUS_3           43                125
D73V9, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           29                104
  CLUS_2           33                133
  CLUS_3            9                 59
D73V10, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           21                 92
  CLUS_2           40                141
  CLUS_3           10                 63

Clustering(74) Variable = 19p loss
D74V1, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            5                 38
  CLUS_2            3                 47
  CLUS_3            5                 25
  CLUS_4           10                 21
D74V2, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            9                 19
  CLUS_2            4                 50
  CLUS_3           10                 62
D74V3, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           18                125
  CLUS_2           13                116
  CLUS_3           34                 91
D74V4, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           13                 85
  CLUS_2           13                 70
  CLUS_3           18                 51
D74V5, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           11                 49
  CLUS_2           12                 61
  CLUS_3            8                 53
D74V6, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           11                 47
  CLUS_2            7                 40
  CLUS_3            8                 41
  CLUS_4            5                 35
D74V7, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            9                 68
  CLUS_2            8                 94
  CLUS_3           26                 85
  CLUS_4           14                 41
D74V8, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           10                 97
  CLUS_2           18                 52
  CLUS_3           29                139
D74V9, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           24                109
  CLUS_2           34                132
  CLUS_3            2                 66
D74V10, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           27                 86
  CLUS_2           29                152
  CLUS_3            4                 69

Clustering(75) Variable = 19q loss
D75V1, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            3                 40
  CLUS_2            4                 46
  CLUS_3            4                 26
  CLUS_4            5                 26
D75V2, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            5                 23
  CLUS_2            6                 48
  CLUS_3            5                 67
D75V3, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           11                132
  CLUS_2           16                113
  CLUS_3           16                109
D75V4, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            5                 93
  CLUS_2           10                 73
  CLUS_3           11                 58
D75V5, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           11                 49
  CLUS_2            5                 68
  CLUS_3            3                 58
D75V6, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2            5                 42
  CLUS_3            2                 47
  CLUS_4            2                 38
D75V7, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            9                 68
  CLUS_2           11                 91
  CLUS_3           12                 99
  CLUS_4            6                 49
D75V8, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           12                 95
  CLUS_2            8                 62
  CLUS_3           18                150
D75V9, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           14                119
  CLUS_2           23                143
  CLUS_3            3                 65
D75V10, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           13                100
  CLUS_2           22                159
  CLUS_3            5                 68

Clustering(76) Variable = 20p loss
D76V1, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            1                 42
  CLUS_2            2                 48
  CLUS_3            2                 28
  CLUS_4            4                 27
D76V2, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            5                 23
  CLUS_2            2                 52
  CLUS_3            2                 70
D76V3, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            6                137
  CLUS_2            2                127
  CLUS_3            9                116
D76V4, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            2                 96
  CLUS_2            2                 81
  CLUS_3            5                 64
D76V5, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            8                 52
  CLUS_2            2                 71
  CLUS_3            2                 59
D76V6, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            5                 53
  CLUS_2            4                 43
  CLUS_3            2                 47
  CLUS_4            1                 39
D76V7, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            5                 72
  CLUS_2            3                 99
  CLUS_3            7                104
  CLUS_4            2                 53
D76V8, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            3                104
  CLUS_2            4                 66
  CLUS_3           10                158
D76V9, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            9                124
  CLUS_2            5                161
  CLUS_3            3                 65
D76V10, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            3                110
  CLUS_2           11                170
  CLUS_3            3                 70

Clustering(77) Variable = 20q loss
D77V1, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            1                 42
  CLUS_2            7                 43
  CLUS_3            0                 30
  CLUS_4            1                 30
D77V2, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            1                 27
  CLUS_2            7                 47
  CLUS_3            1                 71
D77V3, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            5                138
  CLUS_2           13                116
  CLUS_3            4                121
D77V4, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            2                 96
  CLUS_2            8                 75
  CLUS_3            4                 65
D77V5, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            6                 54
  CLUS_2            1                 72
  CLUS_3            3                 58
D77V6, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            4                 54
  CLUS_2            4                 43
  CLUS_3            1                 48
  CLUS_4            1                 39
D77V7, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            3                 74
  CLUS_2           14                 88
  CLUS_3            4                107
  CLUS_4            0                 55
D77V8, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1           14                 93
  CLUS_2            3                 67
  CLUS_3            4                164
D77V9, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            7                126
  CLUS_2            9                157
  CLUS_3            6                 62
D77V10, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            7                106
  CLUS_2            9                172
  CLUS_3            6                 67

Clustering(78) Variable = 21q loss
D78V1, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           18                 25
  CLUS_2           24                 26
  CLUS_3            5                 25
  CLUS_4            9                 22
D78V2, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            8                 20
  CLUS_2           28                 26
  CLUS_3           20                 52
D78V3, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           17                126
  CLUS_2           57                 72
  CLUS_3           48                 77
D78V4, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           10                 88
  CLUS_2           32                 51
  CLUS_3           28                 41
D78V5, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           22                 38
  CLUS_2           20                 53
  CLUS_3           15                 46
D78V6, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           19                 39
  CLUS_2           17                 30
  CLUS_3           14                 35
  CLUS_4            7                 33
D78V7, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           20                 57
  CLUS_2           43                 59
  CLUS_3           32                 79
  CLUS_4           10                 45
D78V8, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           44                 63
  CLUS_2           20                 50
  CLUS_3           41                127
D78V9, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           50                 83
  CLUS_2           45                121
  CLUS_3           18                 50
D78V10, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           42                 71
  CLUS_2           50                131
  CLUS_3           21                 52

Clustering(79) Variable = 22q loss
D79V1, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            6                 37
  CLUS_2            2                 48
  CLUS_3            2                 28
  CLUS_4            7                 24
D79V2, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            6                 22
  CLUS_2            4                 50
  CLUS_3            7                 65
D79V3, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           16                127
  CLUS_2            9                120
  CLUS_3           13                112
D79V4, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            9                 89
  CLUS_2            5                 78
  CLUS_3            8                 61
D79V5, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            8                 52
  CLUS_2            8                 65
  CLUS_3            4                 57
D79V6, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2            3                 44
  CLUS_3            5                 44
  CLUS_4            2                 38
D79V7, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            7                 70
  CLUS_2            7                 95
  CLUS_3           13                 98
  CLUS_4            4                 51
D79V8, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            8                 99
  CLUS_2           11                 59
  CLUS_3           12                156
D79V9, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           13                120
  CLUS_2           17                149
  CLUS_3            1                 67
D79V10, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           13                100
  CLUS_2           16                165
  CLUS_3            2                 71

Clustering(80) Variable = Xq loss
D80V1, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           2                41
  CLUS_2           2                48
  CLUS_3           0                30
  CLUS_4           2                29
D80V2, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           1                27
  CLUS_2           2                52
  CLUS_3           3                69
D80V3, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           5               138
  CLUS_2           3               126
  CLUS_3           7               118
D80V4, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           3                95
  CLUS_2           3                80
  CLUS_3           3                66
D80V5, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           3                57
  CLUS_2           1                72
  CLUS_3           4                57
D80V6, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           0                58
  CLUS_2           7                40
  CLUS_3           1                48
  CLUS_4           0                40
D80V7, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           2                75
  CLUS_2           3                99
  CLUS_3           7               104
  CLUS_4           2                53
D80V8, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           3               104
  CLUS_2           5                65
  CLUS_3           6               162
D80V9, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           8               125
  CLUS_2           6               160
  CLUS_3           0                68
D80V10, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           6               107
  CLUS_2           7               174
  CLUS_3           1                72
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
