		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	465	0.053734	1	0.3366	1	0.093072	1	0.43621	1	0.33565	1	0.89807	1	0.040032	1	0.33322	1	0.69359	1	0.34382	1	0.1246	1	0.71429	1
1q gain	0 (0%)	408	0.52145	1	0.51809	1	0.72753	1	0.56258	1	1.067e-05	0.00984	0.20851	1	0.36512	1	0.79794	1	0.63953	1	0.61931	1	0.20645	1	0.45684	1
2p gain	0 (0%)	440	5.2076e-09	4.91e-06	1.0256e-10	9.71e-08	0.61454	1	1.315e-05	0.0121	3.0193e-11	2.87e-08	3.1321e-11	2.97e-08	0.036288	1	0.43918	1	8.6968e-05	0.0791	0.0045651	1	0.42647	1	0.20857	1
2q gain	0 (0%)	466	1.5275e-06	0.00142	6.4768e-07	0.000606	0.64763	1	0.0025452	1	1.4267e-08	1.34e-05	1.9996e-06	0.00186	0.033757	1	0.32914	1	0.0018348	1	0.0044742	1	0.53464	1	0.48051	1
3p gain	0 (0%)	460	0.40688	1	0.11848	1	0.10243	1	0.61945	1	0.0010206	0.902	0.89293	1	0.20096	1	0.46426	1	0.63314	1	0.88875	1	0.7967	1	0.61775	1
3q gain	0 (0%)	361	0.9483	1	0.0013313	1	0.73548	1	0.28353	1	1.017e-09	9.62e-07	0.00325	1	0.44667	1	0.24824	1	0.35198	1	0.67807	1	0.38684	1	0.44891	1
4p gain	0 (0%)	538	0.88827	1	0.49936	1	0.0046954	1	0.68829	1	0.087611	1	0.051009	1	0.014865	1	0.45762	1	0.95282	1	0.57286	1	0.27219	1	0.28592	1
4q gain	0 (0%)	553	0.94848	1	0.80472	1	0.85314	1	0.93754	1	0.33214	1	0.021357	1	0.020772	1	0.25723	1	0.91311	1	0.58536	1	0.0038492	1	0.047904	1
5p gain	0 (0%)	422	0.64068	1	0.27625	1	0.68772	1	0.48487	1	2.0895e-07	0.000196	0.34823	1	0.59868	1	0.19569	1	0.54422	1	0.90517	1	0.07671	1	0.3	1
5q gain	0 (0%)	535	0.03651	1	0.11803	1	0.49887	1	0.356	1	0.59734	1	0.41645	1	0.15656	1	0.58048	1	0.31644	1	0.65844	1	0.038975	1	0.42186	1
6p gain	0 (0%)	448	0.49191	1	0.0041248	1	0.87307	1	0.021175	1	1.188e-06	0.00111	0.00023802	0.214	0.54553	1	0.74449	1	0.15364	1	0.61917	1	0.29139	1	0.14736	1
6q gain	0 (0%)	507	0.75052	1	0.007087	1	0.89614	1	0.039617	1	1.0128e-05	0.00936	6.5849e-05	0.0601	0.14014	1	0.85668	1	0.0031371	1	0.35442	1	0.9301	1	0.41641	1
7p gain	0 (0%)	444	0.21389	1	0.15083	1	0.045585	1	0.0084301	1	9.1916e-08	8.64e-05	1.0538e-06	0.000984	0.40729	1	0.15792	1	0.083643	1	0.10863	1	0.94436	1	0.37148	1
7q gain	0 (0%)	416	0.087673	1	0.30333	1	0.35304	1	0.35667	1	1.0491e-05	0.00968	0.00049973	0.447	0.26607	1	0.094383	1	0.17509	1	0.17344	1	0.24028	1	0.49218	1
8p gain	0 (0%)	483	0.35484	1	0.12471	1	0.97718	1	0.013128	1	0.26443	1	0.95555	1	0.82971	1	0.23221	1	0.54669	1	0.2315	1	0.57854	1	0.34549	1
8q gain	0 (0%)	365	0.18409	1	0.41747	1	0.12828	1	0.088278	1	0.0086994	1	0.97486	1	0.78613	1	0.12478	1	0.0038502	1	0.37985	1	0.81157	1	0.79525	1
9p gain	0 (0%)	508	0.032484	1	0.50541	1	0.27997	1	0.31866	1	0.004457	1	0.021708	1	0.17329	1	0.59634	1	0.89614	1	0.58663	1	0.15685	1	0.74769	1
9q gain	0 (0%)	542	0.39655	1	0.27531	1	0.10378	1	0.61874	1	0.072618	1	0.22411	1	0.61056	1	0.20794	1	0.8134	1	0.048399	1	0.82915	1	0.73823	1
10p gain	0 (0%)	437	0.010556	1	5.378e-05	0.0492	0.78333	1	0.0076321	1	2.9523e-09	2.79e-06	0.001235	1	0.2939	1	0.45435	1	0.012621	1	0.86548	1	0.50717	1	0.96254	1
10q gain	0 (0%)	501	0.0084956	1	0.0025424	1	0.95872	1	0.016563	1	0.013535	1	0.029735	1	0.28258	1	0.51093	1	0.079979	1	0.31168	1	0.38032	1	0.56963	1
11p gain	0 (0%)	529	0.24374	1	0.40399	1	0.2234	1	0.33989	1	0.042977	1	0.015956	1	0.022531	1	0.0044087	1	0.042674	1	0.28394	1	0.12078	1	0.18341	1
11q gain	0 (0%)	507	0.38261	1	0.77579	1	0.9401	1	0.012474	1	7.9231e-05	0.0722	0.00067865	0.605	0.36933	1	0.45147	1	0.57713	1	0.22077	1	0.28109	1	0.43587	1
12p gain	0 (0%)	361	7.5575e-05	0.0689	1.2699e-05	0.0117	0.30575	1	4.4576e-05	0.0408	4.2687e-13	4.07e-10	3.948e-09	3.73e-06	0.36228	1	0.82455	1	1.464e-05	0.0135	0.00033023	0.297	0.18326	1	0.19382	1
12q gain	0 (0%)	447	0.000834	0.741	5.6491e-06	0.00524	0.53326	1	0.0020373	1	1.221e-14	1.17e-11	9.486e-06	0.00877	0.0093259	1	0.6627	1	0.00073145	0.65	0.002353	1	0.1021	1	0.11896	1
13q gain	0 (0%)	528	0.016757	1	0.22145	1	0.88927	1	0.0017428	1	0.0058752	1	0.0002544	0.229	0.82864	1	0.33561	1	0.4509	1	0.94867	1	0.28906	1	0.61843	1
14q gain	0 (0%)	535	0.010969	1	0.052066	1	0.34817	1	0.054636	1	0.97456	1	0.18847	1	0.064406	1	0.0097759	1	0.27288	1	0.036228	1	0.46011	1	0.64157	1
15q gain	0 (0%)	544	0.38177	1	0.6402	1	0.33659	1	0.45908	1	0.26953	1	0.66214	1	0.16581	1	0.82401	1	1	1	1	1	0.63843	1	0.54036	1
16p gain	0 (0%)	538	0.036799	1	0.022368	1	0.91941	1	0.3552	1	0.14897	1	0.14781	1	0.67479	1	0.10145	1	1	1	1	1	0.9259	1	0.51254	1
16q gain	0 (0%)	553	0.018331	1	0.00096084	0.85	0.21931	1	0.49092	1	0.59746	1	0.041976	1	0.51217	1	0.12387	1	NA	NA	NA	NA	0.11882	1	0.26851	1
17p gain	0 (0%)	558	0.4335	1	0.12858	1	0.50862	1	0.27029	1	0.063978	1	0.43428	1	0.4141	1	0.79496	1	0.35173	1	0.63157	1	0.58019	1	0.36479	1
17q gain	0 (0%)	546	0.7286	1	0.2846	1	0.27071	1	0.24493	1	0.070509	1	0.33899	1	0.50852	1	0.92151	1	0.59097	1	0.68348	1	0.69524	1	0.46579	1
18p gain	0 (0%)	495	0.0072538	1	0.0011948	1	0.85151	1	0.15672	1	0.0014729	1	8.2246e-05	0.0748	0.0028287	1	0.073145	1	0.52655	1	0.61144	1	0.27146	1	0.58921	1
18q gain	0 (0%)	528	0.24954	1	0.61487	1	0.53139	1	0.56478	1	0.041953	1	0.021344	1	0.20572	1	0.45416	1	0.61417	1	0.43977	1	0.13648	1	0.79183	1
19p gain	0 (0%)	470	0.023836	1	0.020788	1	0.66379	1	0.19156	1	1.9503e-08	1.84e-05	0.00068256	0.607	0.015067	1	0.23515	1	0.74126	1	0.82177	1	0.67697	1	0.3114	1
19q gain	0 (0%)	477	0.022589	1	0.04697	1	0.62351	1	0.15994	1	6.8452e-07	0.00064	0.00036445	0.327	0.024237	1	0.26626	1	0.5578	1	0.52494	1	0.32769	1	0.21699	1
20p gain	0 (0%)	335	0.0017407	1	5.2601e-07	0.000493	0.20654	1	4.0831e-06	0.00379	3.867e-15	3.7e-12	4.0958e-12	3.9e-09	0.32174	1	0.57179	1	0.0037546	1	0.14405	1	0.56911	1	1	1
20q gain	0 (0%)	296	1.9449e-05	0.0178	3.3497e-13	3.2e-10	0.49653	1	1.6007e-06	0.00149	3.3043e-20	3.17e-17	9.6484e-17	9.23e-14	0.45641	1	0.17546	1	0.0032992	1	0.3947	1	0.35065	1	0.87726	1
21q gain	0 (0%)	499	0.6664	1	0.032214	1	0.98582	1	0.90641	1	7.0682e-06	0.00655	0.00018618	0.168	0.2896	1	0.25904	1	0.37056	1	0.17061	1	0.23062	1	0.68336	1
22q gain	0 (0%)	560	0.37902	1	0.83325	1	0.69186	1	0.64053	1	0.20458	1	0.83952	1	0.60354	1	0.70144	1	0.83266	1	1	1	0.043254	1	0.47395	1
Xq gain	0 (0%)	535	0.19353	1	0.026133	1	0.94929	1	0.60331	1	0.013886	1	0.10472	1	0.090381	1	0.32809	1	0.39338	1	0.4998	1	0.20333	1	0.76711	1
1p loss	0 (0%)	534	0.0044312	1	0.011222	1	0.28424	1	0.49019	1	0.77922	1	0.21819	1	0.50324	1	0.51377	1	0.73621	1	0.36082	1	1	1	1	1
1q loss	0 (0%)	547	0.01796	1	0.0042763	1	0.0041224	1	0.34687	1	0.33664	1	0.49735	1	0.64762	1	0.18907	1	0.79644	1	0.096428	1	0.3288	1	0.84338	1
2p loss	0 (0%)	543	0.76101	1	0.87146	1	0.90496	1	0.18135	1	0.57155	1	0.38326	1	0.33212	1	0.58514	1	0.17823	1	0.29035	1	0.83336	1	0.22889	1
2q loss	0 (0%)	539	0.78853	1	0.53048	1	0.81572	1	0.085826	1	0.53022	1	0.139	1	0.28727	1	0.66814	1	0.54632	1	0.24334	1	0.67592	1	0.10933	1
3p loss	0 (0%)	508	0.059245	1	0.012124	1	0.92473	1	0.04757	1	0.0046852	1	0.11825	1	0.86993	1	0.24993	1	0.018136	1	0.45827	1	0.19387	1	0.534	1
3q loss	0 (0%)	546	0.23936	1	0.086622	1	0.96379	1	0.18181	1	0.19779	1	0.19765	1	0.59221	1	0.60643	1	0.080309	1	0.27615	1	0.48902	1	0.68426	1
4p loss	0 (0%)	307	0.098908	1	0.080089	1	0.5163	1	0.023611	1	0.031235	1	0.88869	1	0.15459	1	0.17682	1	0.15212	1	0.29226	1	0.034353	1	0.010381	1
4q loss	0 (0%)	267	0.048907	1	0.020958	1	0.26936	1	0.014675	1	0.010102	1	0.76285	1	0.28585	1	0.092452	1	0.46976	1	0.03565	1	0.047057	1	0.00025273	0.227
5p loss	0 (0%)	484	0.37793	1	0.088016	1	0.18841	1	0.16226	1	0.012893	1	0.0046986	1	0.20395	1	0.15561	1	0.00040668	0.364	0.56173	1	0.91868	1	0.69874	1
5q loss	0 (0%)	397	0.00014435	0.131	2.2205e-05	0.0203	0.65511	1	0.0013784	1	0.00017345	0.157	1.6998e-07	0.00016	0.0084335	1	0.060411	1	0.00066396	0.592	0.28447	1	0.5329	1	0.59495	1
6p loss	0 (0%)	443	0.92286	1	0.052387	1	0.71601	1	0.79378	1	0.19037	1	0.051061	1	0.21208	1	0.40748	1	0.47979	1	0.79656	1	0.18022	1	1	1
6q loss	0 (0%)	371	0.96008	1	0.02382	1	0.82934	1	0.84428	1	0.079046	1	0.020217	1	0.098587	1	0.65295	1	0.12425	1	0.19354	1	0.21101	1	0.8119	1
7p loss	0 (0%)	478	0.61378	1	0.24622	1	0.18447	1	0.30391	1	0.074611	1	0.14622	1	0.38224	1	0.76663	1	0.94356	1	0.034714	1	0.025898	1	0.71828	1
7q loss	0 (0%)	521	0.33653	1	0.85539	1	0.43114	1	0.65245	1	0.26734	1	0.026685	1	0.34938	1	0.7556	1	0.57884	1	0.21966	1	0.053667	1	0.83667	1
8p loss	0 (0%)	334	0.75569	1	0.57144	1	0.45352	1	0.8599	1	0.0015057	1	0.07438	1	0.19909	1	0.3505	1	0.34002	1	0.91397	1	0.47139	1	0.19113	1
8q loss	0 (0%)	506	0.069699	1	0.034965	1	0.20143	1	0.36886	1	0.0020727	1	0.067527	1	0.076626	1	0.48452	1	0.039285	1	0.04403	1	0.78856	1	0.38041	1
9p loss	0 (0%)	357	0.00058515	0.523	0.0045562	1	0.73673	1	0.060265	1	0.029692	1	0.0010339	0.913	0.67382	1	0.97575	1	0.56685	1	0.13376	1	0.040209	1	0.3305	1
9q loss	0 (0%)	329	0.0013298	1	0.000371	0.332	0.14181	1	0.0065078	1	1.5109e-11	1.44e-08	0.0023216	1	0.653	1	0.88138	1	0.0027623	1	0.21167	1	0.10882	1	0.030881	1
10p loss	0 (0%)	502	0.43601	1	0.6233	1	0.3277	1	0.80588	1	0.89459	1	0.69472	1	0.19336	1	0.20523	1	0.96423	1	0.6594	1	0.1094	1	0.61294	1
10q loss	0 (0%)	479	0.6422	1	0.38031	1	0.099402	1	0.79852	1	0.1176	1	0.59135	1	0.25929	1	0.22741	1	0.76289	1	0.26	1	0.29786	1	0.21837	1
11p loss	0 (0%)	423	0.0060894	1	0.0052393	1	0.096389	1	0.26223	1	0.081567	1	0.0080164	1	0.55809	1	0.13329	1	0.021253	1	0.68689	1	0.78732	1	0.80869	1
11q loss	0 (0%)	461	0.13491	1	0.3915	1	0.013464	1	0.25784	1	0.18677	1	0.10287	1	0.82182	1	0.079117	1	0.073346	1	0.79656	1	0.29526	1	0.13697	1
12p loss	0 (0%)	518	0.29389	1	0.089145	1	1	1	0.11972	1	0.0081152	1	0.24182	1	0.97102	1	0.059675	1	0.29621	1	0.43977	1	0.59089	1	0.27694	1
12q loss	0 (0%)	493	0.19206	1	0.0019896	1	0.38899	1	0.27697	1	0.0027435	1	0.09417	1	0.83859	1	0.26609	1	0.14854	1	0.016182	1	0.42131	1	0.33484	1
13q loss	0 (0%)	307	0.12033	1	0.74033	1	0.90684	1	0.068734	1	0.00085663	0.76	1.2613e-06	0.00118	0.0029906	1	0.0043609	1	0.29707	1	0.98503	1	0.41785	1	0.89627	1
14q loss	0 (0%)	405	0.084244	1	0.15991	1	0.87522	1	0.91732	1	0.00011814	0.107	0.025628	1	0.96636	1	0.47856	1	0.045438	1	0.55716	1	0.4301	1	0.35573	1
15q loss	0 (0%)	349	0.0034623	1	0.0087178	1	0.0009143	0.81	0.0034965	1	7.1736e-11	6.8e-08	0.00018489	0.167	0.88355	1	0.88461	1	0.024465	1	0.44881	1	0.0063776	1	0.37541	1
16p loss	0 (0%)	298	0.91165	1	0.96935	1	0.19619	1	0.67708	1	0.027512	1	0.10491	1	0.96419	1	0.9312	1	0.35305	1	0.6109	1	0.27125	1	0.56098	1
16q loss	0 (0%)	209	0.91766	1	0.88697	1	0.040993	1	0.36236	1	0.02634	1	0.088619	1	0.73291	1	0.97296	1	0.49213	1	0.81181	1	0.2686	1	0.082632	1
17p loss	0 (0%)	140	0.18795	1	0.040644	1	0.89112	1	0.54515	1	0.2429	1	0.046266	1	0.52534	1	0.17806	1	0.29504	1	0.11924	1	0.33909	1	0.41755	1
17q loss	0 (0%)	237	0.010961	1	0.004494	1	0.024557	1	0.66305	1	0.59676	1	0.18552	1	0.18766	1	0.12744	1	0.12763	1	0.10867	1	0.0073363	1	0.28762	1
18p loss	0 (0%)	382	0.76652	1	0.93189	1	0.33033	1	0.41337	1	0.21552	1	0.012772	1	0.94108	1	0.23955	1	0.01799	1	0.20641	1	0.88053	1	0.91722	1
18q loss	0 (0%)	333	0.2018	1	0.75345	1	0.69971	1	0.60843	1	0.84525	1	0.45334	1	0.96308	1	0.13963	1	0.0028468	1	0.10282	1	0.66878	1	0.46685	1
19p loss	0 (0%)	424	0.53158	1	0.80858	1	0.15174	1	0.22455	1	0.17896	1	0.09958	1	0.027013	1	0.1077	1	0.4664	1	0.71031	1	0.90746	1	0.77834	1
19q loss	0 (0%)	424	0.12581	1	0.44841	1	0.31453	1	0.29572	1	0.27754	1	0.72276	1	0.070625	1	0.36267	1	1	1	0.87081	1	0.20091	1	0.31323	1
20p loss	0 (0%)	531	0.30354	1	0.52881	1	0.62489	1	0.3615	1	0.17171	1	0.09624	1	0.65678	1	0.44681	1	0.020756	1	0.075894	1	0.011573	1	0.89061	1
20q loss	0 (0%)	547	0.71663	1	0.18782	1	0.2757	1	0.73726	1	0.51769	1	0.73652	1	0.35183	1	0.26939	1	0.2454	1	0.6249	1	0.24834	1	1	1
21q loss	0 (0%)	418	0.34275	1	0.24828	1	0.31	1	0.063403	1	0.7934	1	0.051503	1	0.28555	1	0.38666	1	0.46045	1	0.56346	1	0.4644	1	0.96584	1
22q loss	0 (0%)	182	0.00012018	0.109	1.8045e-05	0.0166	0.055997	1	0.036336	1	0.0001765	0.16	0.0095015	1	0.039487	1	0.10113	1	0.080624	1	0.19052	1	0.0027861	1	0.38953	1
Xq loss	0 (0%)	468	0.07954	1	0.16145	1	0.036319	1	0.1501	1	0.085128	1	0.3158	1	1	1	0.46578	1	0.29467	1	0.82155	1	0.97526	1	0.38371	1
