
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/410846/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/READ-TP/3132743/1.GDAC_clinicalDataPicker.Finished/READ-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=READ-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=READ-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=168, in cluster file=162, common to both=162
[1]  62 162
[1] "Amp Peak  1(1q21.3)"
[1] 3
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           114 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           114 
[1] "Amp Peak  2(1q32.2)"
[1] 3
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           114 
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           114 
[1] "Amp Peak  3(5q22.3)"
[1] 3
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                           19                           143 
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                           19                           143 
[1] "Amp Peak  4(6p21.1)"
[1] 3
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                           52                           110 
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                           52                           110 
[1] "Amp Peak  5(8p11.23)"
[1] 3
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                            52                            110 
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                            52                            110 
[1] "Amp Peak  6(8p11.21)"
[1] 3
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                            69                             93 
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                            69                             93 
[1] "Amp Peak  7(8q24.21)"
[1] 3
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                           107                             55 
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                           107                             55 
[1] "Amp Peak  8(10q22.2)"
[1] 3
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            151 
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            151 
[1] "Amp Peak  9(11p15.5)"
[1] 3
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                            43                            119 
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                            43                            119 
[1] "Amp Peak 10(11q13.3)"
[1] 3
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                            26                            136 
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                            26                            136 
[1] "Amp Peak 11(12p13.33)"
[1] 3
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             121 
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             121 
[1] "Amp Peak 12(12p12.1)"
[1] 3
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            122 
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            122 
[1] "Amp Peak 13(13q12.13)"
[1] 3
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                            121                              41 
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                            121                              41 
[1] "Amp Peak 14(13q12.2)"
[1] 3
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                           120                             42 
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                           120                             42 
[1] "Amp Peak 15(13q22.1)"
[1] 3
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                           117                             45 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                           117                             45 
[1] "Amp Peak 16(15q26.1)"
[1] 3
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                            15                            147 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                            15                            147 
[1] "Amp Peak 17(16p11.2)"
[1] 3
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                            45                            117 
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                            45                            117 
[1] "Amp Peak 18(17q12)"
[1] 3
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          43                          119 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          43                          119 
[1] "Amp Peak 19(17q24.1)"
[1] 3
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                            37                            125 
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                            37                            125 
[1] "Amp Peak 20(19p13.2)"
[1] 3
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                            32                            130 
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                            32                            130 
[1] "Amp Peak 21(20q11.21)"
[1] 3
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                            143                              19 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                            143                              19 
[1] "Amp Peak 22(20q11.23)"
[1] 3
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                            144                              18 
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                            144                              18 
[1] "Amp Peak 23(20q13.31)"
[1] 3
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                            145                              17 
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                            145                              17 
[1] "Amp Peak 24(Xp22.2)"
[1] 3
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                           33                           129 
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                           33                           129 
[1] "Amp Peak 25(Xq27.3)"
[1] 3
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                           38                           124 
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                           38                           124 
[1] "Del Peak  1(1p36.11)"
[1] 3
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            71                             91 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            71                             91 
[1] "Del Peak  2(1p33)"
[1] 3
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                         49                         113 
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                         49                         113 
[1] "Del Peak  3(1p13.2)"
[1] 3
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                           51                           111 
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                           51                           111 
[1] "Del Peak  4(2p12)"
[1] 3
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                         17                         145 
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                         17                         145 
[1] "Del Peak  5(3p14.2)"
[1] 3
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                           133 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                           133 
[1] "Del Peak  6(3q26.31)"
[1] 3
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                            17                            145 
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                            17                            145 
[1] "Del Peak  7(4p13)"
[1] 3
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                         58                         104 
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                         58                         104 
[1] "Del Peak  8(4q22.1)"
[1] 3
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                           72                            90 
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                           72                            90 
[1] "Del Peak  9(4q35.1)"
[1] 3
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            90 
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            90 
[1] "Del Peak 10(5q11.2)"
[1] 3
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                           49                           113 
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                           49                           113 
[1] "Del Peak 11(5q22.2)"
[1] 3
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                           55                           107 
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                           55                           107 
[1] "Del Peak 12(6p25.3)"
[1] 3
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           138 
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           138 
[1] "Del Peak 13(6q26)"
[1] 3
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         132 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         132 
[1] "Del Peak 14(7q31.1)"
[1] 3
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           158 
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           158 
[1] "Del Peak 15(8p23.2)"
[1] 3
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            62 
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            62 
[1] "Del Peak 16(8p11.21)"
[1] 3
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                            24                            138 
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                            24                            138 
[1] "Del Peak 17(10q21.1)"
[1] 3
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                            37                            125 
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                            37                            125 
[1] "Del Peak 18(10q25.2)"
[1] 3
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                            47                            115 
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                            47                            115 
[1] "Del Peak 19(11q22.3)"
[1] 3
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                            37                            125 
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                            37                            125 
[1] "Del Peak 20(12p13.1)"
[1] 3
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            129 
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            129 
[1] "Del Peak 21(12q21.33)"
[1] 3
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                             28                             134 
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                             28                             134 
[1] "Del Peak 22(14q11.2)"
[1] 3
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                            67                             95 
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                            67                             95 
[1] "Del Peak 23(14q31.1)"
[1] 3
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                            69                             93 
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                            69                             93 
[1] "Del Peak 24(15q22.33)"
[1] 3
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                             75                              87 
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                             75                              87 
[1] "Del Peak 25(16p13.3)"
[1] 3
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                            13                            149 
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                            13                            149 
[1] "Del Peak 26(16q23.1)"
[1] 3
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            139 
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            139 
[1] "Del Peak 27(17p12)"
[1] 3
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                         110                           52 
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                         110                           52 
[1] "Del Peak 28(17p11.2)"
[1] 3
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                           102                             60 
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                           102                             60 
[1] "Del Peak 29(17q25.3)"
[1] 3
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                            24                            138 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                            24                            138 
[1] "Del Peak 30(18q21.2)"
[1] 3
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                           143                             19 
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                           143                             19 
[1] "Del Peak 31(18q22.1)"
[1] 3
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                           138                             24 
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                           138                             24 
[1] "Del Peak 32(19p13.3)"
[1] 3
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                            38                            124 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                            38                            124 
[1] "Del Peak 33(20p12.1)"
[1] 3
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                            60                            102 
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                            60                            102 
[1] "Del Peak 34(20p12.1)"
[1] 3
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                            60                            102 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                            60                            102 
[1] "Del Peak 35(21q11.2)"
[1] 3
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                            70                             92 
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                            70                             92 
[1] "Del Peak 36(22q13.31)"
[1] 3
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                             66                              96 
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                             66                              96 
[1] "Del Peak 37(Xp22.33)"
[1] 3
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                            33                            129 
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                            33                            129 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 162 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
         594          482          358          323          412          581 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
         387          536          316          441          257          231 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3574 TCGA-AG-3575 TCGA-AG-3578 TCGA-AG-3580 
         193          223           NA           NA           NA           NA 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 TCGA-AG-3586 TCGA-AG-3587 
          31           31           61           NA           NA           31 
TCGA-AG-3591 TCGA-AG-3592 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 TCGA-AG-3599 
          NA           NA           NA           NA           NA           30 
TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 TCGA-AG-3609 
          NA           NA           NA           NA           NA           NA 
TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3725 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3728 
          NA           NA           NA           31           29           NA 
TCGA-AG-3731 TCGA-AG-3732 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3881 TCGA-AG-3882 
          31           NA           30           30           NA           NA 
TCGA-AG-3883 TCGA-AG-3885 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 TCGA-AG-3893 
          NA           NA           28           NA           31           30 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 TCGA-AG-3909 
          30           NA           NA           NA           NA           NA 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4015 
          31           31           NA           31           31           NA 
TCGA-AG-4021 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
          NA           30          637          423          183          789 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
         700          518          484          396           31           31 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
         365          365         2130         1946          334           NA 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
        1519           NA           NA         1884         1246         1156 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
          15           44           21           22          140           55 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6621 TCGA-CI-6622 TCGA-CI-6623 
         310          183          183           NA          211          285 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
         143          425         1825          243          334          335 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
         304          153          273          224          212          849 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
         212          608          180          121          152            8 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
        3635         1257         1741         3683          734         1566 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
         991           15           73          232            5           66 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
         250           14          121           20          210          216 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
         187          108          121           83          159          237 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6464 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
          84           62           NA          103           26           66 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
          12           31           20           21           16           33 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
          23           14           NA         1451           NA          636 
Variable 1:'AGE':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=92,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=24,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "HISTOLOGICAL.TYPE"                     
 [4] "PATHOLOGY.T"                           
 [5] "PATHOLOGY.N"                           
 [6] "PATHOLOGICSPREAD(M)"                   
 [7] "TUMOR.STAGE"                           
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "COMPLETENESS.OF.RESECTION"             
[10] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
30 50 50 25 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 162 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=47, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
  9  29 109  14 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
  9  29 109  14 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
  9  29 109  14 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
  9  29 109  14 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
83 45 32 
[1] "table(vv)"
vv
N0 N1 N2 
83 45 32 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 
83 45 32 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
83 45 32 
PATHOLOGICSPREAD(M), nv=4, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 30  50  50  25 
[1] "table(vv)"
vv
  I  II III  IV 
 30  50  50  25 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 30  50  50  25 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 30  50  50  25 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=21, binary=FALSE, numeric=TRUE

Clustering(1) Variable = Amp Peak  1(1q21.3)
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1Q21.3) CNV       33  5
  AMP PEAK  1(1Q21.3) WILD-TYPE 81  6
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           38                            87 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                            5                             6 
$`AMP PEAK  1(1Q21.3) CNV`
TCGA-AF-2687 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 
       19.53        13.55        19.10        14.50         7.59         7.33 
TCGA-AG-3587 TCGA-AG-3999 TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01N 
        1.02         1.02        23.01        17.03        13.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6643 
       70.03        63.98         1.94        38.93        38.01         0.69 
TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-6155 
        0.72        10.19         9.37         4.70        11.01         7.36 
TCGA-DC-6156 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EI-6506 TCGA-EI-6882 TCGA-EI-6884 
        6.97       121.08        24.13         7.63         3.55         2.73 
TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6810 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 
        5.23         2.76         0.39         0.69         0.76        18.25 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

$`AMP PEAK  1(1Q21.3) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       15.85        11.77        10.62        12.72        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 
        8.45         6.35         1.02         1.02         2.01         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.95         1.02         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A014 
        0.99        20.94        13.91         6.02        25.94        15.91 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
        1.02         1.02        12.00        10.98        51.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 
       61.94        40.96         0.49         1.45         4.60         1.81 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.02         6.02         6.94        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 TCGA-DC-6158 
       10.98         9.99         5.03         8.98        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
       19.99         5.92         3.98         5.00         0.26       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
       41.33        57.24        51.48        32.58         0.49         2.40 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        0.16         2.17         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6917 TCGA-EI-7004 
        6.90         7.10         6.15         3.98         7.79         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 
        3.39         0.85         2.17         1.02         0.66         0.53 
TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 
        1.08         0.46        47.70 

      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                         0.39                          0.16 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                       121.08                        119.51 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                         9.78                          5.03 
[1] "0.4 - 121.1 (9.8)" "0.2 - 119.5 (5.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-G5-6641 
      "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-G5-6641 
      "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-G5-6641 
      "AMP PEAK  1(1Q21.3) CNV" 
[1] "hr=" "1.5"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV         21   27
  AMP PEAK  1(1Q21.3) WILD-TYPE   53   61
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  FEMALE                      21                            53
  MALE                        27                            61
D1V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV         41    3
  AMP PEAK  1(1Q21.3) WILD-TYPE  102   10
                                clus
vv                               AMP PEAK  1(1Q21.3) CNV
  RECTAL ADENOCARCINOMA                               41
  RECTAL MUCINOUS ADENOCARCINOMA                       3
                                clus
vv                               AMP PEAK  1(1Q21.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    102
  RECTAL MUCINOUS ADENOCARCINOMA                            10
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  1(1Q21.3) CNV        3  8 28  8
  AMP PEAK  1(1Q21.3) WILD-TYPE  6 21 81  6
D1V5, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  T1                       3                             6
  T2                       8                            21
  T3                      28                            81
  T4                       8                             6
                               vv
clus                            N0 N1 N2
  AMP PEAK  1(1Q21.3) CNV       23 11 12
  AMP PEAK  1(1Q21.3) WILD-TYPE 60 34 20
D1V6, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  N0                      23                            60
  N1                      11                            34
  N2                      12                            20
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  1(1Q21.3) CNV       34  4   1  7
  AMP PEAK  1(1Q21.3) WILD-TYPE 89 18   1  6
D1V7, multiclass
     clus
vv    AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  M0                       34                            89
  M1                        4                            18
  M1A                       1                             1
  MX                        7                             6
                               vv
clus                             I II III IV
  AMP PEAK  1(1Q21.3) CNV        7 16  16  7
  AMP PEAK  1(1Q21.3) WILD-TYPE 23 34  34 18
D1V8, multiclass
     clus
vv    AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  I                         7                            23
  II                       16                            34
  III                      16                            34
  IV                        7                            18
D1V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV          4   44
  AMP PEAK  1(1Q21.3) WILD-TYPE    2  112
     clus
vv    AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                        4                             2
  YES                      44                           112
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  1(1Q21.3) CNV       33  1  3  0
  AMP PEAK  1(1Q21.3) WILD-TYPE 88  1  9  3
D1V10, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  R0                      33                            88
  R1                       1                             1
  R2                       3                             9
  RX                       0                             3
D1V11, continuous

Clustering(2) Variable = Amp Peak  2(1q32.2)
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q32.2) CNV       31  7
  AMP PEAK  2(1Q32.2) WILD-TYPE 83  4
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                           38                            87 
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                            7                             4 
$`AMP PEAK  2(1Q32.2) CNV`
TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3587 TCGA-AG-3999 
       13.55        14.50         7.59         7.33         1.02         1.02 
TCGA-AG-A00Y TCGA-AG-A015 TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A023 TCGA-AG-A026 
       23.01        13.02        12.00        70.03        51.98         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-BM-6198 
       38.93        38.01         0.49         0.69         0.72        10.19 
TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6156 TCGA-DY-A1DE 
        9.37         4.70        11.01         7.36         6.97       121.08 
TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 
       24.13        32.58         7.63         3.55         2.73         5.23 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6810 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 
        2.76         2.04         0.39         0.69         0.76        18.25 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

$`AMP PEAK  2(1Q32.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 
       19.53        15.85        11.77        10.62        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 
       17.62        10.39         8.45         6.35         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        2.01         0.99         1.02         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         0.99        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       25.94        17.03        15.91         1.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 
       63.98        10.98        49.94        61.94        40.96         1.45 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 
        4.60         1.81         6.02         6.02         6.94        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
       60.00         7.99        10.98         9.99         5.03         8.98 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
       27.91         6.97        19.99         5.92         3.98         5.00 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-EF-5830 
        0.26       119.51        41.33        57.24        51.48         0.49 
TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        2.40         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6917 
        0.66         6.90         7.10         6.15         3.98         7.79 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 
        3.39         0.85         2.17         1.02         0.66         0.53 
TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 
        1.08         0.46        47.70 

      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                         0.39                          0.16 
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                       121.08                        119.51 
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                         7.61                          6.02 
[1] "0.4 - 121.1 (7.6)" "0.2 - 119.5 (6.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-G5-6641 
      "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-G5-6641 
      "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-G5-6641 
      "AMP PEAK  2(1Q32.2) CNV" 
[1] "hr=" "3.2"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) CNV         22   26
  AMP PEAK  2(1Q32.2) WILD-TYPE   52   62
        clus
vv       AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  FEMALE                      22                            52
  MALE                        26                            62
D2V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) CNV         41    4
  AMP PEAK  2(1Q32.2) WILD-TYPE  102    9
                                clus
vv                               AMP PEAK  2(1Q32.2) CNV
  RECTAL ADENOCARCINOMA                               41
  RECTAL MUCINOUS ADENOCARCINOMA                       4
                                clus
vv                               AMP PEAK  2(1Q32.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    102
  RECTAL MUCINOUS ADENOCARCINOMA                             9
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  2(1Q32.2) CNV        3  8 27  9
  AMP PEAK  2(1Q32.2) WILD-TYPE  6 21 82  5
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  T1                       3                             6
  T2                       8                            21
  T3                      27                            82
  T4                       9                             5
                               vv
clus                            N0 N1 N2
  AMP PEAK  2(1Q32.2) CNV       21 12 13
  AMP PEAK  2(1Q32.2) WILD-TYPE 62 33 19
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  N0                      21                            62
  N1                      12                            33
  N2                      13                            19
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  2(1Q32.2) CNV       33  6   1  6
  AMP PEAK  2(1Q32.2) WILD-TYPE 90 16   1  7
D2V7, multiclass
     clus
vv    AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  M0                       33                            90
  M1                        6                            16
  M1A                       1                             1
  MX                        6                             7
                               vv
clus                             I II III IV
  AMP PEAK  2(1Q32.2) CNV        6 15  15  9
  AMP PEAK  2(1Q32.2) WILD-TYPE 24 35  35 16
D2V8, multiclass
     clus
vv    AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  I                         6                            24
  II                       15                            35
  III                      15                            35
  IV                        9                            16
D2V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) CNV          3   45
  AMP PEAK  2(1Q32.2) WILD-TYPE    3  111
     clus
vv    AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  NO                        3                             3
  YES                      45                           111
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  2(1Q32.2) CNV       32  1  3  0
  AMP PEAK  2(1Q32.2) WILD-TYPE 89  1  9  3
D2V10, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  R0                      32                            89
  R1                       1                             1
  R2                       3                             9
  RX                       0                             3
D2V11, continuous

Clustering(3) Variable = Amp Peak  3(5q22.3)
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(5Q22.3) CNV       16  0
  AMP PEAK  3(5Q22.3) WILD-TYPE 98 11
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                           16                           109 
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                            0                            11 
$`AMP PEAK  3(5Q22.3) CNV`
TCGA-AF-6655 TCGA-AG-4007 TCGA-AG-A014 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A032 
        6.35         1.02        15.91        12.00        12.00        38.01 
TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-DC-6683 TCGA-EI-6506 TCGA-EI-6514 
        0.49         0.69         0.72         5.00         7.63         7.10 
TCGA-EI-6883 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6811 
        3.98         2.76         3.39         1.02 

$`AMP PEAK  3(5Q22.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
        7.33         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.95         1.02         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y 
       17.03        13.02         1.02         1.02        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 
       40.96         1.45         4.60         1.81        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DC-6682 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        3.98         0.26       119.51        41.33        57.24       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 
       24.13        51.48        32.58         0.49         2.40         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        2.17         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 
        6.15         3.55         2.73         5.23         7.79         2.04 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        0.85         2.17         0.39         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.76         0.46        18.25        47.70        47.08 
TCGA-G5-6641 
       20.91 

      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                         0.49                          0.16 
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                        38.01                        121.08 
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                         4.49                          6.94 
[1] "0.5 - 38.0 (4.5)"  "0.2 - 121.1 (6.9)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" 
[1] "hr="     "2.8e+07"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) CNV          8   11
  AMP PEAK  3(5Q22.3) WILD-TYPE   66   77
        clus
vv       AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  FEMALE                       8                            66
  MALE                        11                            77
D3V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) CNV         19    0
  AMP PEAK  3(5Q22.3) WILD-TYPE  124   13
                                clus
vv                               AMP PEAK  3(5Q22.3) CNV
  RECTAL ADENOCARCINOMA                               19
  RECTAL MUCINOUS ADENOCARCINOMA                       0
                                clus
vv                               AMP PEAK  3(5Q22.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    124
  RECTAL MUCINOUS ADENOCARCINOMA                            13
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  3(5Q22.3) CNV        0  4 14  1
  AMP PEAK  3(5Q22.3) WILD-TYPE  9 25 95 13
D3V5, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  T1                       0                             9
  T2                       4                            25
  T3                      14                            95
  T4                       1                            13
                               vv
clus                            N0 N1 N2
  AMP PEAK  3(5Q22.3) CNV        8  6  4
  AMP PEAK  3(5Q22.3) WILD-TYPE 75 39 28
D3V6, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  N0                       8                            75
  N1                       6                            39
  N2                       4                            28
                               vv
clus                             M0  M1 M1A  MX
  AMP PEAK  3(5Q22.3) CNV        14   4   0   1
  AMP PEAK  3(5Q22.3) WILD-TYPE 109  18   2  12
D3V7, multiclass
     clus
vv    AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  M0                       14                           109
  M1                        4                            18
  M1A                       0                             2
  MX                        1                            12
                               vv
clus                             I II III IV
  AMP PEAK  3(5Q22.3) CNV        2  5   7  3
  AMP PEAK  3(5Q22.3) WILD-TYPE 28 45  43 22
D3V8, multiclass
     clus
vv    AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  I                         2                            28
  II                        5                            45
  III                       7                            43
  IV                        3                            22
D3V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) CNV          0   19
  AMP PEAK  3(5Q22.3) WILD-TYPE    6  137
     clus
vv    AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  NO                        0                             6
  YES                      19                           137
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  3(5Q22.3) CNV        14   0   2   0
  AMP PEAK  3(5Q22.3) WILD-TYPE 107   2  10   3
D3V10, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  R0                      14                           107
  R1                       0                             2
  R2                       2                            10
  RX                       0                             3
D3V11, continuous

Clustering(4) Variable = Amp Peak  4(6p21.1)
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(6P21.1) CNV       33  4
  AMP PEAK  4(6P21.1) WILD-TYPE 81  7
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                           37                            88 
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                            4                             7 
$`AMP PEAK  4(6P21.1) CNV`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 
       19.53        10.62        19.10        17.62        10.39        14.50 
TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 
        7.59         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01N TCGA-AH-6644 TCGA-BM-6198 
       13.02         1.02        12.00        12.00         0.72        10.19 
TCGA-CI-6619 TCGA-CI-6623 TCGA-DC-4745 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 
        6.02         9.37        10.98         5.03         8.98         6.97 
TCGA-DC-6157 TCGA-DC-6682 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EI-6506 
       27.91         3.98       121.08        24.13        51.48         7.63 
TCGA-EI-6511 TCGA-EI-6512 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 TCGA-G5-6233 
        3.98         0.66         3.39         2.17         0.39        18.25 
TCGA-G5-6641 
       20.91 

$`AMP PEAK  4(6P21.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-5654 TCGA-AF-6655 
       15.85        11.77        13.55        12.72         8.45         6.35 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        7.33         1.02         2.01         0.99         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.99         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01W 
       25.94        23.01        17.03        15.91         1.02        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       63.98        10.98        51.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
       61.94        40.96        38.01         0.49         1.45         0.69 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
        4.60         1.81         6.02         6.94         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6155 TCGA-DC-6158 
       60.00         7.99        11.01         9.99         7.36         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         5.00         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 
       57.24        32.58         0.49         2.40         0.16         2.17 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
        8.22         0.46         6.90         7.10         6.15         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        3.98         2.73         5.23         7.79         2.76         2.04 
TCGA-F5-6571 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.85         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.76         0.46        47.70        47.08 

      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                         0.39                          0.16 
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                       121.08                        119.51 
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                         8.98                          5.97 
[1] "0.4 - 121.1 (9.0)" "0.2 - 119.5 (6.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "AMP PEAK  4(6P21.1) CNV" 
[1] "hr=" "2.3"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) CNV         21   31
  AMP PEAK  4(6P21.1) WILD-TYPE   53   57
        clus
vv       AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  FEMALE                      21                            53
  MALE                        31                            57
D4V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) CNV         49    1
  AMP PEAK  4(6P21.1) WILD-TYPE   94   12
                                clus
vv                               AMP PEAK  4(6P21.1) CNV
  RECTAL ADENOCARCINOMA                               49
  RECTAL MUCINOUS ADENOCARCINOMA                       1
                                clus
vv                               AMP PEAK  4(6P21.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     94
  RECTAL MUCINOUS ADENOCARCINOMA                            12
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  4(6P21.1) CNV        4  6 37  5
  AMP PEAK  4(6P21.1) WILD-TYPE  5 23 72  9
D4V5, multiclass
    clus
vv   AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  T1                       4                             5
  T2                       6                            23
  T3                      37                            72
  T4                       5                             9
                               vv
clus                            N0 N1 N2
  AMP PEAK  4(6P21.1) CNV       18 17 16
  AMP PEAK  4(6P21.1) WILD-TYPE 65 28 16
D4V6, multiclass
    clus
vv   AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  N0                      18                            65
  N1                      17                            28
  N2                      16                            16
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  4(6P21.1) CNV       31 12   1  7
  AMP PEAK  4(6P21.1) WILD-TYPE 92 10   1  6
D4V7, multiclass
     clus
vv    AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  M0                       31                            92
  M1                       12                            10
  M1A                       1                             1
  MX                        7                             6
                               vv
clus                             I II III IV
  AMP PEAK  4(6P21.1) CNV        8 10  19 13
  AMP PEAK  4(6P21.1) WILD-TYPE 22 40  31 12
D4V8, multiclass
     clus
vv    AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  I                         8                            22
  II                       10                            40
  III                      19                            31
  IV                       13                            12
D4V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) CNV          4   48
  AMP PEAK  4(6P21.1) WILD-TYPE    2  108
     clus
vv    AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  NO                        4                             2
  YES                      48                           108
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  4(6P21.1) CNV       35  0  7  0
  AMP PEAK  4(6P21.1) WILD-TYPE 86  2  5  3
D4V10, multiclass
    clus
vv   AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  R0                      35                            86
  R1                       0                             2
  R2                       7                             5
  RX                       0                             3
D4V11, continuous

Clustering(5) Variable = Amp Peak  5(8p11.23)
D5V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  5(8P11.23) CNV       35  7
  AMP PEAK  5(8P11.23) WILD-TYPE 79  4
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                            42                             83 
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                             7                              4 
$`AMP PEAK  5(8P11.23) CNV`
TCGA-AF-3911 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3887 TCGA-AG-3893 
       17.62         6.35         7.33         1.02         0.92         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A014 TCGA-AG-A01N TCGA-AG-A023 
        1.02         1.02         0.99        15.91        12.00        51.98 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-CI-6619 TCGA-CI-6623 
       38.01         0.49         0.69         0.72         6.02         9.37 
TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        4.70        60.00         7.99         6.97        27.91         6.97 
TCGA-DC-6682 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
        3.98        41.33        57.24        24.13        51.48         0.49 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6883 TCGA-EI-6884 TCGA-F5-6465 
        8.22         3.98         7.10         3.98         2.73         3.39 
TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6572 
        2.17         1.02         0.69         0.46        18.25        47.08 

$`AMP PEAK  5(8P11.23) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AG-3581 
       12.72        10.39        14.50         8.45         7.59         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        2.01         1.02         0.99         1.02         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       13.02         1.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-CI-6622 
        1.45         4.60         1.81        10.19         6.02         6.94 
TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
       13.97        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6155 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
        7.36        19.99         5.92         5.00         0.26       119.51 
TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
      121.08        32.58         2.40         7.63         0.16         2.17 
TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6885 
        0.46         0.66         6.90         6.15         3.55         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 
        7.79         2.76         2.04         0.85         0.39         0.66 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6235 TCGA-G5-6641 
        0.53         1.08         0.76        47.70        20.91 

      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                          0.46                           0.16 
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                         60.00                         121.08 
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                         6.185                          6.900 
[1] "0.5 - 60.0 (6.2)"  "0.2 - 121.1 (6.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6641 
"AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6641 
"AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6641 
"AMP PEAK  5(8P11.23) WILD-TYPE" 
[1] "hr=" "2.8"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) CNV         18   34
  AMP PEAK  5(8P11.23) WILD-TYPE   56   54
        clus
vv       AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  FEMALE                       18                             56
  MALE                         34                             54
D5V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) CNV         50    2
  AMP PEAK  5(8P11.23) WILD-TYPE   93   11
                                clus
vv                               AMP PEAK  5(8P11.23) CNV
  RECTAL ADENOCARCINOMA                                50
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               AMP PEAK  5(8P11.23) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      93
  RECTAL MUCINOUS ADENOCARCINOMA                             11
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  5(8P11.23) CNV        1  7 36  7
  AMP PEAK  5(8P11.23) WILD-TYPE  8 22 73  7
D5V5, multiclass
    clus
vv   AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  T1                        1                              8
  T2                        7                             22
  T3                       36                             73
  T4                        7                              7
                                vv
clus                             N0 N1 N2
  AMP PEAK  5(8P11.23) CNV       24 13 13
  AMP PEAK  5(8P11.23) WILD-TYPE 59 32 19
D5V6, multiclass
    clus
vv   AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  N0                       24                             59
  N1                       13                             32
  N2                       13                             19
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  5(8P11.23) CNV       35 10   1  5
  AMP PEAK  5(8P11.23) WILD-TYPE 88 12   1  8
D5V7, multiclass
     clus
vv    AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  M0                        35                             88
  M1                        10                             12
  M1A                        1                              1
  MX                         5                              8
                                vv
clus                              I II III IV
  AMP PEAK  5(8P11.23) CNV        6 18  14 11
  AMP PEAK  5(8P11.23) WILD-TYPE 24 32  36 14
D5V8, multiclass
     clus
vv    AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  I                          6                             24
  II                        18                             32
  III                       14                             36
  IV                        11                             14
D5V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) CNV          2   50
  AMP PEAK  5(8P11.23) WILD-TYPE    4  106
     clus
vv    AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  NO                         2                              4
  YES                       50                            106
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  5(8P11.23) CNV       30  0  7  2
  AMP PEAK  5(8P11.23) WILD-TYPE 91  2  5  1
D5V10, multiclass
    clus
vv   AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  R0                       30                             91
  R1                        0                              2
  R2                        7                              5
  RX                        2                              1
D5V11, continuous

Clustering(6) Variable = Amp Peak  6(8p11.21)
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(8P11.21) CNV       45  8
  AMP PEAK  6(8P11.21) WILD-TYPE 69  3
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                            53                             72 
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                             8                              3 
$`AMP PEAK  6(8P11.21) CNV`
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3887 TCGA-AG-3999 TCGA-AG-4007 
        6.35         7.33         1.02         0.92         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N 
        0.99        23.01        15.91         1.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 
       63.98        51.98         1.94        38.93        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-CI-6619 TCGA-CI-6623 TCGA-CI-6624 
        1.45         0.69         0.72         6.02         9.37         4.70 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
       60.00         7.99         7.36         6.97        27.91         6.97 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        3.98         5.00       119.51        41.33        57.24       121.08 
TCGA-DY-A1DF TCGA-EF-5830 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6883 
       24.13         0.49         8.22         3.98         7.10         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6863 
        2.73         5.23         3.39         2.17         1.02         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

$`AMP PEAK  6(8P11.21) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 
       17.03        13.02        12.00        70.03        10.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 
       61.94        40.96         4.60         1.81        10.19         6.02 
TCGA-CI-6622 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
        6.94        13.97        10.98        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A1DG TCGA-DY-A1H8 
        8.98        19.99         5.92         0.26        51.48        32.58 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 
        2.40         7.63         0.16         2.17         0.46         0.66 
TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        6.90         6.15         3.55         7.79         2.76         2.04 
TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.85         0.39         0.66         0.69         0.53         1.08 

      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                          0.46                           0.16 
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                        121.08                          70.03 
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                         6.350                          6.525 
[1] "0.5 - 121.1 (6.3)" "0.2 - 70.0 (6.5)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK  6(8P11.21) CNV" 
[1] "hr=" "1.6"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) CNV         30   39
  AMP PEAK  6(8P11.21) WILD-TYPE   44   49
        clus
vv       AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  FEMALE                       30                             44
  MALE                         39                             49
D6V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) CNV         64    3
  AMP PEAK  6(8P11.21) WILD-TYPE   79   10
                                clus
vv                               AMP PEAK  6(8P11.21) CNV
  RECTAL ADENOCARCINOMA                                64
  RECTAL MUCINOUS ADENOCARCINOMA                        3
                                clus
vv                               AMP PEAK  6(8P11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      79
  RECTAL MUCINOUS ADENOCARCINOMA                             10
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  6(8P11.21) CNV        2 11 47  8
  AMP PEAK  6(8P11.21) WILD-TYPE  7 18 62  6
D6V5, multiclass
    clus
vv   AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  T1                        2                              7
  T2                       11                             18
  T3                       47                             62
  T4                        8                              6
                                vv
clus                             N0 N1 N2
  AMP PEAK  6(8P11.21) CNV       34 18 15
  AMP PEAK  6(8P11.21) WILD-TYPE 49 27 17
D6V6, multiclass
    clus
vv   AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  N0                       34                             49
  N1                       18                             27
  N2                       15                             17
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  6(8P11.21) CNV       47 13   1  7
  AMP PEAK  6(8P11.21) WILD-TYPE 76  9   1  6
D6V7, multiclass
     clus
vv    AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  M0                        47                             76
  M1                        13                              9
  M1A                        1                              1
  MX                         7                              6
                                vv
clus                              I II III IV
  AMP PEAK  6(8P11.21) CNV        8 25  18 14
  AMP PEAK  6(8P11.21) WILD-TYPE 22 25  32 11
D6V8, multiclass
     clus
vv    AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  I                          8                             22
  II                        25                             25
  III                       18                             32
  IV                        14                             11
D6V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) CNV          1   68
  AMP PEAK  6(8P11.21) WILD-TYPE    5   88
     clus
vv    AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  NO                         1                              5
  YES                       68                             88
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  6(8P11.21) CNV       41  2  9  2
  AMP PEAK  6(8P11.21) WILD-TYPE 80  0  3  1
D6V10, multiclass
    clus
vv   AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  R0                       41                             80
  R1                        2                              0
  R2                        9                              3
  RX                        2                              1
D6V11, continuous

Clustering(7) Variable = Amp Peak  7(8q24.21)
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(8Q24.21) CNV       73  9
  AMP PEAK  7(8Q24.21) WILD-TYPE 41  2
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                            82                             43 
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                             9                              2 
$`AMP PEAK  7(8Q24.21) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       19.53        15.85        11.77        10.62        13.55        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 
       17.62        10.39         8.45         6.35         7.33         1.02 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3887 
        1.02         1.02         0.95         1.02         0.99         0.92 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A00H 
        1.02         1.02         1.02         1.02         0.99        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N 
       23.01        17.03        15.91         1.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       70.03        63.98        51.98         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-BM-6198 
       38.01         0.49         1.45         0.69         0.72        10.19 
TCGA-CI-6619 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        6.02         9.37         4.70        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
       11.01         5.03         8.98         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        6.97         3.98         5.00       119.51        41.33        57.24 
TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6511 
       24.13        32.58         0.49         2.40         8.22         3.98 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-F5-6465 
        6.90         7.10         3.98         2.73         5.23         3.39 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6814 TCGA-F5-6863 TCGA-F5-6864 
        2.17         0.39         1.02         0.53         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.70        47.08        20.91 

$`AMP PEAK  7(8Q24.21) WILD-TYPE`
TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3599 
       19.10        14.50         7.59         1.02         2.01         0.99 
TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02         0.99         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G 
        6.02        13.02        12.00        10.98        49.94        38.93 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-DC-5337 
        4.60         1.81         6.02         6.94        13.97         9.99 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EI-6506 
       19.99         5.92         0.26       121.08        51.48         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-6882 
        0.16         2.17         0.46         0.66         6.15         3.55 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6812 TCGA-F5-6813 
        7.79         2.76         2.04         0.85         0.66         0.69 
TCGA-F5-6861 
        1.08 

      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                          0.39                           0.16 
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                        119.51                         121.08 
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                         7.035                          5.920 
[1] "0.4 - 119.5 (7.0)" "0.2 - 121.1 (5.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK  7(8Q24.21) CNV" 
[1] "hr=" "1.4"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) CNV         48   59
  AMP PEAK  7(8Q24.21) WILD-TYPE   26   29
        clus
vv       AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  FEMALE                       48                             26
  MALE                         59                             29
D7V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) CNV         99    5
  AMP PEAK  7(8Q24.21) WILD-TYPE   44    8
                                clus
vv                               AMP PEAK  7(8Q24.21) CNV
  RECTAL ADENOCARCINOMA                                99
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               AMP PEAK  7(8Q24.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      44
  RECTAL MUCINOUS ADENOCARCINOMA                              8
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  7(8Q24.21) CNV        4 18 74 10
  AMP PEAK  7(8Q24.21) WILD-TYPE  5 11 35  4
D7V5, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  T1                        4                              5
  T2                       18                             11
  T3                       74                             35
  T4                       10                              4
                                vv
clus                             N0 N1 N2
  AMP PEAK  7(8Q24.21) CNV       54 28 23
  AMP PEAK  7(8Q24.21) WILD-TYPE 29 17  9
D7V6, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  N0                       54                             29
  N1                       28                             17
  N2                       23                              9
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  7(8Q24.21) CNV       78 17   1  9
  AMP PEAK  7(8Q24.21) WILD-TYPE 45  5   1  4
D7V7, multiclass
     clus
vv    AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  M0                        78                             45
  M1                        17                              5
  M1A                        1                              1
  MX                         9                              4
                                vv
clus                              I II III IV
  AMP PEAK  7(8Q24.21) CNV       16 37  31 16
  AMP PEAK  7(8Q24.21) WILD-TYPE 14 13  19  9
D7V8, multiclass
     clus
vv    AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  I                         16                             14
  II                        37                             13
  III                       31                             19
  IV                        16                              9
D7V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) CNV          5  102
  AMP PEAK  7(8Q24.21) WILD-TYPE    1   54
     clus
vv    AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  NO                         5                              1
  YES                      102                             54
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  7(8Q24.21) CNV       76  2 10  2
  AMP PEAK  7(8Q24.21) WILD-TYPE 45  0  2  1
D7V10, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  R0                       76                             45
  R1                        2                              0
  R2                       10                              2
  RX                        2                              1
D7V11, continuous

Clustering(8) Variable = Amp Peak  8(10q22.2)
D8V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  8(10Q22.2) CNV         9   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 105  11
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                             9                            116 
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                             0                             11 
$`AMP PEAK  8(10Q22.2) CNV`
TCGA-AF-2689 TCGA-AG-3587 TCGA-AG-3999 TCGA-AG-A014 TCGA-AG-A01W TCGA-AG-A020 
       15.85         1.02         1.02        15.91        70.03        10.98 
TCGA-BM-6198 TCGA-CI-6619 TCGA-DC-4745 
       10.19         6.02        10.98 

$`AMP PEAK  8(10Q22.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       17.62        10.39        14.50         8.45         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 
        7.33         1.02         1.02         2.01         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.95         1.02         0.99         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y 
       13.02         1.02         1.02        12.00        12.00        63.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       51.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.01         0.49         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        1.81         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
       60.00         7.99        11.01         9.99         5.03         8.98 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        3.98         5.00         0.26       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      121.08        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        7.63         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.66         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        2.73         5.23         7.79         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.53         1.08         0.76         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                          1.02                           0.16 
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                         70.03                         121.08 
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                        10.980                          6.085 
[1] "1.0 - 70.0 (11.0)" "0.2 - 121.1 (6.1)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" 
[1] "hr="     "7.7e+07"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) CNV          6    5
  AMP PEAK  8(10Q22.2) WILD-TYPE   68   83
        clus
vv       AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  FEMALE                        6                             68
  MALE                          5                             83
D8V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) CNV          9    1
  AMP PEAK  8(10Q22.2) WILD-TYPE  134   12
                                clus
vv                               AMP PEAK  8(10Q22.2) CNV
  RECTAL ADENOCARCINOMA                                 9
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               AMP PEAK  8(10Q22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     134
  RECTAL MUCINOUS ADENOCARCINOMA                             12
                                vv
clus                              T1  T2  T3  T4
  AMP PEAK  8(10Q22.2) CNV         0   2   9   0
  AMP PEAK  8(10Q22.2) WILD-TYPE   9  27 100  14
D8V5, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  T1                        0                              9
  T2                        2                             27
  T3                        9                            100
  T4                        0                             14
                                vv
clus                             N0 N1 N2
  AMP PEAK  8(10Q22.2) CNV        5  4  2
  AMP PEAK  8(10Q22.2) WILD-TYPE 78 41 30
D8V6, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  N0                        5                             78
  N1                        4                             41
  N2                        2                             30
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK  8(10Q22.2) CNV         8   2   0   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 115  20   2  13
D8V7, multiclass
     clus
vv    AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  M0                         8                            115
  M1                         2                             20
  M1A                        0                              2
  MX                         0                             13
                                vv
clus                              I II III IV
  AMP PEAK  8(10Q22.2) CNV        2  3   4  1
  AMP PEAK  8(10Q22.2) WILD-TYPE 28 47  46 24
D8V8, multiclass
     clus
vv    AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  I                          2                             28
  II                         3                             47
  III                        4                             46
  IV                         1                             24
D8V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) CNV          1   10
  AMP PEAK  8(10Q22.2) WILD-TYPE    5  146
     clus
vv    AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  NO                         1                              5
  YES                       10                            146
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK  8(10Q22.2) CNV         9   0   0   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 112   2  12   3
D8V10, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  R0                        9                            112
  R1                        0                              2
  R2                        0                             12
  RX                        0                              3
D8V11, continuous

Clustering(9) Variable = Amp Peak  9(11p15.5)
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(11P15.5) CNV       31  2
  AMP PEAK  9(11P15.5) WILD-TYPE 83  9
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                            33                             92 
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                             2                              9 
$`AMP PEAK  9(11P15.5) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 
       15.85        11.77        13.55        10.39         8.45         6.35 
TCGA-AF-6672 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-3894 TCGA-AG-4001 
        7.33         2.01         1.02         0.95         0.99         1.02 
TCGA-AG-4007 TCGA-AG-A01N TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6623 TCGA-CL-4957 
        1.02        12.00         4.60        10.19         9.37        13.97 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 TCGA-DC-6160 
       11.01         9.99         5.03         8.98        27.91        19.99 
TCGA-DY-A0XA TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6514 TCGA-F5-6810 
      119.51         0.49         2.40         7.63         7.10         0.39 
TCGA-F5-6811 TCGA-F5-6861 TCGA-G5-6233 
        1.02         1.08        18.25 

$`AMP PEAK  9(11P15.5) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       19.53        10.62        19.10        12.72        17.62        14.50 
TCGA-AF-6136 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 
        7.59         1.02         1.02         0.99         1.02         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 
        0.99         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       23.01        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
        1.94        38.93        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 
        1.45         0.69         0.72         1.81         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-6155 
        6.94         4.70        60.00         7.99        10.98         7.36 
TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.97         6.97         5.92         3.98         5.00         0.26 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
       41.33        57.24       121.08        24.13        51.48        32.58 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        0.16         2.17         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        6.90         6.15         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        7.79         2.76         2.04         3.39         0.85         2.17 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.66         0.69         0.53         0.76         0.46        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                          0.39                           0.16 
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                        119.51                         121.08 
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                          7.63                           6.02 
[1] "0.4 - 119.5 (7.6)" "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) CNV         20   23
  AMP PEAK  9(11P15.5) WILD-TYPE   54   65
        clus
vv       AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  FEMALE                       20                             54
  MALE                         23                             65
D9V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) CNV         41    1
  AMP PEAK  9(11P15.5) WILD-TYPE  102   12
                                clus
vv                               AMP PEAK  9(11P15.5) CNV
  RECTAL ADENOCARCINOMA                                41
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               AMP PEAK  9(11P15.5) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     102
  RECTAL MUCINOUS ADENOCARCINOMA                             12
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  9(11P15.5) CNV        3  8 28  4
  AMP PEAK  9(11P15.5) WILD-TYPE  6 21 81 10
D9V5, multiclass
    clus
vv   AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  T1                        3                              6
  T2                        8                             21
  T3                       28                             81
  T4                        4                             10
                                vv
clus                             N0 N1 N2
  AMP PEAK  9(11P15.5) CNV       27  8  8
  AMP PEAK  9(11P15.5) WILD-TYPE 56 37 24
D9V6, multiclass
    clus
vv   AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  N0                       27                             56
  N1                        8                             37
  N2                        8                             24
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  9(11P15.5) CNV       34  6   0  2
  AMP PEAK  9(11P15.5) WILD-TYPE 89 16   2 11
D9V7, multiclass
     clus
vv    AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  M0                        34                             89
  M1                         6                             16
  M1A                        0                              2
  MX                         2                             11
                                vv
clus                              I II III IV
  AMP PEAK  9(11P15.5) CNV        9 17   9  5
  AMP PEAK  9(11P15.5) WILD-TYPE 21 33  41 20
D9V8, multiclass
     clus
vv    AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  I                          9                             21
  II                        17                             33
  III                        9                             41
  IV                         5                             20
D9V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) CNV          2   41
  AMP PEAK  9(11P15.5) WILD-TYPE    4  115
     clus
vv    AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  NO                         2                              4
  YES                       41                            115
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  9(11P15.5) CNV       34  0  3  0
  AMP PEAK  9(11P15.5) WILD-TYPE 87  2  9  3
D9V10, multiclass
    clus
vv   AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  R0                       34                             87
  R1                        0                              2
  R2                        3                              9
  RX                        0                              3
D9V11, continuous

Clustering(10) Variable = Amp Peak 10(11q13.3)
D10V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 10(11Q13.3) CNV       20  1
  AMP PEAK 10(11Q13.3) WILD-TYPE 94 10
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                            21                            104 
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                             1                             10 
$`AMP PEAK 10(11Q13.3) CNV`
TCGA-AF-2690 TCGA-AF-3913 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A01N TCGA-AG-A01Y 
       11.77        10.39         1.02         1.02        12.00        63.98 
TCGA-AH-6897 TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 
        4.60         9.37         4.70        11.01         5.03         8.98 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DT-5265 TCGA-DY-A1DE TCGA-EI-6514 
        6.97        27.91         6.97         0.26       121.08         7.10 
TCGA-EI-6885 TCGA-F5-6810 TCGA-F5-6811 
        5.23         0.39         1.02 

$`AMP PEAK 10(11Q13.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        15.85        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.95         1.02         0.99         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 
       13.02         1.02         1.02        12.00        70.03        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       51.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6903 
       38.01         0.49         1.45         0.69         0.72         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5917 
       10.19         6.02         6.02         6.94        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6155 TCGA-DC-6160 TCGA-DC-6681 
        7.99        10.98         9.99         7.36        19.99         5.92 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF 
        3.98         5.00       119.51        41.33        57.24        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 
       51.48        32.58         0.49         2.40         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        2.17         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7002 
        6.15         3.55         3.98         2.73         7.79         2.76 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6813 
        2.04         3.39         0.85         2.17         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.53         1.08         0.76         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                          0.26                           0.16 
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                        121.08                         119.51 
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                         6.970                          6.085 
[1] "0.3 - 121.1 (7.0)" "0.2 - 119.5 (6.1)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" 
[1] "hr=" "2.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) CNV         12   14
  AMP PEAK 10(11Q13.3) WILD-TYPE   62   74
        clus
vv       AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  FEMALE                       12                             62
  MALE                         14                             74
D10V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) CNV         25    1
  AMP PEAK 10(11Q13.3) WILD-TYPE  118   12
                                clus
vv                               AMP PEAK 10(11Q13.3) CNV
  RECTAL ADENOCARCINOMA                                25
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               AMP PEAK 10(11Q13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     118
  RECTAL MUCINOUS ADENOCARCINOMA                             12
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 10(11Q13.3) CNV        1  7 15  3
  AMP PEAK 10(11Q13.3) WILD-TYPE  8 22 94 11
D10V5, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  T1                        1                              8
  T2                        7                             22
  T3                       15                             94
  T4                        3                             11
                                vv
clus                             N0 N1 N2
  AMP PEAK 10(11Q13.3) CNV       17  5  4
  AMP PEAK 10(11Q13.3) WILD-TYPE 66 40 28
D10V6, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  N0                       17                             66
  N1                        5                             40
  N2                        4                             28
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK 10(11Q13.3) CNV        19   5   1   1
  AMP PEAK 10(11Q13.3) WILD-TYPE 104  17   1  12
D10V7, multiclass
     clus
vv    AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  M0                        19                            104
  M1                         5                             17
  M1A                        1                              1
  MX                         1                             12
                                vv
clus                              I II III IV
  AMP PEAK 10(11Q13.3) CNV        7  9   3  5
  AMP PEAK 10(11Q13.3) WILD-TYPE 23 41  47 20
D10V8, multiclass
     clus
vv    AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  I                          7                             23
  II                         9                             41
  III                        3                             47
  IV                         5                             20
D10V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) CNV          0   26
  AMP PEAK 10(11Q13.3) WILD-TYPE    6  130
     clus
vv    AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  NO                         0                              6
  YES                       26                            130
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 10(11Q13.3) CNV        18   0   2   1
  AMP PEAK 10(11Q13.3) WILD-TYPE 103   2  10   2
D10V10, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  R0                       18                            103
  R1                        0                              2
  R2                        2                             10
  RX                        1                              2
D10V11, continuous

Clustering(11) Variable = Amp Peak 11(12p13.33)
D11V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 11(12P13.33) CNV       28  4
  AMP PEAK 11(12P13.33) WILD-TYPE 86  7
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                             32                              93 
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                              4                               7 
$`AMP PEAK 11(12P13.33) CNV`
TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 
       19.10        12.72        17.62        14.50         8.45         7.33 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3887 TCGA-AG-4001 TCGA-AG-4022 
        1.02         1.02         1.02         0.92         1.02         0.99 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A02G TCGA-AG-A02N TCGA-CI-6624 TCGA-CL-5917 
       15.91        13.02        38.93        61.94         4.70        60.00 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1H8 
        3.98         5.00         0.26       119.51        57.24        32.58 
TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6812 
        0.16         0.46         0.66         5.23         2.76         0.66 
TCGA-G5-6233 TCGA-G5-6641 
       18.25        20.91 

$`AMP PEAK 11(12P13.33) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3913 
       19.53        15.85        11.77        10.62        13.55        10.39 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 
        7.59         6.35         1.02         1.02         2.01         0.99 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.99         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       25.94        23.01        17.03         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
        1.94        40.96        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.72         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        6.94         9.37        13.97         7.99        10.98        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
        9.99         5.03         8.98         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DF 
        6.97        19.99         5.92        41.33       121.08        24.13 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
       51.48         0.49         2.40         7.63         2.17         8.22 
TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        3.98         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        2.73         7.79         2.04         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        0.39         1.02         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.46        47.70        47.08 

      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                           0.16                            0.39 
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                         119.51                          121.08 
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                           6.28                            6.35 
[1] "0.2 - 119.5 (6.3)" "0.4 - 121.1 (6.3)"
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6641 
      "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6641 
      "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6641 
      "AMP PEAK 11(12P13.33) CNV" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) CNV         17   24
  AMP PEAK 11(12P13.33) WILD-TYPE   57   64
        clus
vv       AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  FEMALE                        17                              57
  MALE                          24                              64
D11V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) CNV         33    5
  AMP PEAK 11(12P13.33) WILD-TYPE  110    8
                                clus
vv                               AMP PEAK 11(12P13.33) CNV
  RECTAL ADENOCARCINOMA                                 33
  RECTAL MUCINOUS ADENOCARCINOMA                         5
                                clus
vv                               AMP PEAK 11(12P13.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      110
  RECTAL MUCINOUS ADENOCARCINOMA                               8
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 11(12P13.33) CNV        2 11 25  3
  AMP PEAK 11(12P13.33) WILD-TYPE  7 18 84 11
D11V5, multiclass
    clus
vv   AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  T1                         2                               7
  T2                        11                              18
  T3                        25                              84
  T4                         3                              11
                                 vv
clus                              N0 N1 N2
  AMP PEAK 11(12P13.33) CNV       24  9  8
  AMP PEAK 11(12P13.33) WILD-TYPE 59 36 24
D11V6, multiclass
    clus
vv   AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  N0                        24                              59
  N1                         9                              36
  N2                         8                              24
                                 vv
clus                              M0 M1 M1A MX
  AMP PEAK 11(12P13.33) CNV       30  4   0  7
  AMP PEAK 11(12P13.33) WILD-TYPE 93 18   2  6
D11V7, multiclass
     clus
vv    AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  M0                         30                              93
  M1                          4                              18
  M1A                         0                               2
  MX                          7                               6
                                 vv
clus                               I II III IV
  AMP PEAK 11(12P13.33) CNV        9 15  10  7
  AMP PEAK 11(12P13.33) WILD-TYPE 21 35  40 18
D11V8, multiclass
     clus
vv    AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  I                           9                              21
  II                         15                              35
  III                        10                              40
  IV                          7                              18
D11V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) CNV          3   38
  AMP PEAK 11(12P13.33) WILD-TYPE    3  118
     clus
vv    AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  NO                          3                               3
  YES                        38                             118
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 11(12P13.33) CNV       28  0  3  2
  AMP PEAK 11(12P13.33) WILD-TYPE 93  2  9  1
D11V10, multiclass
    clus
vv   AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  R0                        28                              93
  R1                         0                               2
  R2                         3                               9
  RX                         2                               1
D11V11, continuous

Clustering(12) Variable = Amp Peak 12(12p12.1)
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(12P12.1) CNV       27  3
  AMP PEAK 12(12P12.1) WILD-TYPE 87  8
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                            30                             95 
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                             3                              8 
$`AMP PEAK 12(12P12.1) CNV`
TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 
       19.10        12.72        17.62        14.50         8.45         7.33 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3887 TCGA-AG-3999 TCGA-AG-4001 
        1.02         1.02         1.02         0.92         1.02         1.02 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A02G TCGA-AG-A02N TCGA-CI-6620 TCGA-CI-6624 
       15.91        13.02        38.93        61.94         6.02         4.70 
TCGA-CL-5917 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1H8 TCGA-EI-6507 
       60.00         3.98         5.00         0.26        32.58         0.16 
TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 TCGA-EI-7002 TCGA-G5-6233 TCGA-G5-6641 
        0.46         0.66         5.23         2.76        18.25        20.91 

$`AMP PEAK 12(12P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3913 
       19.53        15.85        11.77        10.62        13.55        10.39 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 
        7.59         6.35         1.02         1.02         2.01         0.99 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.99         1.02         0.99         0.99 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         0.99        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       25.94        23.01        17.03         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
        1.94        40.96        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6622 
        0.72         4.60         1.81        10.19         6.02         6.94 
TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
        9.37        13.97         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        5.03         8.98         7.36         6.97        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
       19.99         5.92       119.51        41.33        57.24       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 
       24.13        51.48         0.49         2.40         7.63         2.17 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
        8.22         3.98         6.90         7.10         6.15         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        3.98         2.73         7.79         2.04         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.17         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.76         0.46        47.70        47.08 

      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                          0.16                           0.39 
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                         61.94                         121.08 
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                         5.625                          6.900 
[1] "0.2 - 61.9 (5.6)"  "0.4 - 121.1 (6.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "AMP PEAK 12(12P12.1) CNV" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) CNV         17   23
  AMP PEAK 12(12P12.1) WILD-TYPE   57   65
        clus
vv       AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  FEMALE                       17                             57
  MALE                         23                             65
D12V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) CNV         32    5
  AMP PEAK 12(12P12.1) WILD-TYPE  111    8
                                clus
vv                               AMP PEAK 12(12P12.1) CNV
  RECTAL ADENOCARCINOMA                                32
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               AMP PEAK 12(12P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     111
  RECTAL MUCINOUS ADENOCARCINOMA                              8
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 12(12P12.1) CNV        2 11 24  3
  AMP PEAK 12(12P12.1) WILD-TYPE  7 18 85 11
D12V5, multiclass
    clus
vv   AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  T1                        2                              7
  T2                       11                             18
  T3                       24                             85
  T4                        3                             11
                                vv
clus                             N0 N1 N2
  AMP PEAK 12(12P12.1) CNV       21  9 10
  AMP PEAK 12(12P12.1) WILD-TYPE 62 36 22
D12V6, multiclass
    clus
vv   AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  N0                       21                             62
  N1                        9                             36
  N2                       10                             22
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 12(12P12.1) CNV       27  6   0  7
  AMP PEAK 12(12P12.1) WILD-TYPE 96 16   2  6
D12V7, multiclass
     clus
vv    AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  M0                        27                             96
  M1                         6                             16
  M1A                        0                              2
  MX                         7                              6
                                vv
clus                              I II III IV
  AMP PEAK 12(12P12.1) CNV        9 12  10  9
  AMP PEAK 12(12P12.1) WILD-TYPE 21 38  40 16
D12V8, multiclass
     clus
vv    AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  I                          9                             21
  II                        12                             38
  III                       10                             40
  IV                         9                             16
D12V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) CNV          3   37
  AMP PEAK 12(12P12.1) WILD-TYPE    3  119
     clus
vv    AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  NO                         3                              3
  YES                       37                            119
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 12(12P12.1) CNV       27  0  4  2
  AMP PEAK 12(12P12.1) WILD-TYPE 94  2  8  1
D12V10, multiclass
    clus
vv   AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  R0                       27                             94
  R1                        0                              2
  R2                        4                              8
  RX                        2                              1
D12V11, continuous

Clustering(13) Variable = Amp Peak 13(13q12.13)
D13V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 13(13Q12.13) CNV       86 11
  AMP PEAK 13(13Q12.13) WILD-TYPE 28  0
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                             97                              28 
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                             11                               0 
$`AMP PEAK 13(13Q12.13) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       15.85        11.77        10.62        13.55        19.10        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-3742 
        1.02         1.02         2.01         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02         0.99         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A023 TCGA-AG-A025 
       15.91        13.02         1.02        12.00        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
        1.94        38.93        38.01         0.49         0.69         0.72 
TCGA-AH-6897 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
        4.60         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        5.03         8.98         6.97        27.91         6.97        19.99 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        3.98         5.00       119.51        41.33        57.24       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       24.13        51.48        32.58         0.49         2.40         7.63 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        2.17         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 
        7.10         6.15         3.98         2.73         2.76         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.69         0.76         0.46        18.25        47.70        47.08 
TCGA-G5-6641 
       20.91 

$`AMP PEAK 13(13Q12.13) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3400 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3878 
       19.53        12.72         0.99         1.02         1.02         0.99 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W 
        1.02        20.94        13.91         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6903 
       63.98        10.98        61.94        40.96         1.45         1.81 
TCGA-BM-6198 TCGA-DC-6155 TCGA-DC-6681 TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 
       10.19         7.36         5.92         0.26         0.16         3.55 
TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
        5.23         7.79         0.53         1.08 

      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                           0.39                            0.16 
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                         121.08                           70.03 
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                          6.900                           5.575 
[1] "0.4 - 121.1 (6.9)" "0.2 - 70.0 (5.6)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 13(13Q12.13) CNV" 
[1] "hr="     "3.1e+08"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) CNV         54   67
  AMP PEAK 13(13Q12.13) WILD-TYPE   20   21
        clus
vv       AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  FEMALE                        54                              20
  MALE                          67                              21
D13V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) CNV        112    5
  AMP PEAK 13(13Q12.13) WILD-TYPE   31    8
                                clus
vv                               AMP PEAK 13(13Q12.13) CNV
  RECTAL ADENOCARCINOMA                                112
  RECTAL MUCINOUS ADENOCARCINOMA                         5
                                clus
vv                               AMP PEAK 13(13Q12.13) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       31
  RECTAL MUCINOUS ADENOCARCINOMA                               8
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 13(13Q12.13) CNV        7 19 80 14
  AMP PEAK 13(13Q12.13) WILD-TYPE  2 10 29  0
D13V5, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  T1                         7                               2
  T2                        19                              10
  T3                        80                              29
  T4                        14                               0
                                 vv
clus                              N0 N1 N2
  AMP PEAK 13(13Q12.13) CNV       54 37 28
  AMP PEAK 13(13Q12.13) WILD-TYPE 29  8  4
D13V6, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  N0                        54                              29
  N1                        37                               8
  N2                        28                               4
                                 vv
clus                              M0 M1 M1A MX
  AMP PEAK 13(13Q12.13) CNV       89 18   1 12
  AMP PEAK 13(13Q12.13) WILD-TYPE 34  4   1  1
D13V7, multiclass
     clus
vv    AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  M0                         89                              34
  M1                         18                               4
  M1A                         1                               1
  MX                         12                               1
                                 vv
clus                               I II III IV
  AMP PEAK 13(13Q12.13) CNV       21 33  41 20
  AMP PEAK 13(13Q12.13) WILD-TYPE  9 17   9  5
D13V8, multiclass
     clus
vv    AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  I                          21                               9
  II                         33                              17
  III                        41                               9
  IV                         20                               5
D13V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) CNV          3  118
  AMP PEAK 13(13Q12.13) WILD-TYPE    3   38
     clus
vv    AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  NO                          3                               3
  YES                       118                              38
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 13(13Q12.13) CNV       86  2  9  2
  AMP PEAK 13(13Q12.13) WILD-TYPE 35  0  3  1
D13V10, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  R0                        86                              35
  R1                         2                               0
  R2                         9                               3
  RX                         2                               1
D13V11, continuous

Clustering(14) Variable = Amp Peak 14(13q12.2)
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(13Q12.2) CNV       85 11
  AMP PEAK 14(13Q12.2) WILD-TYPE 29  0
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                            96                             29 
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                            11                              0 
$`AMP PEAK 14(13Q12.2) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       15.85        11.77        10.62        13.55        19.10        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 
       10.39        14.50         7.59         6.35         7.33         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3887 
        1.02         2.01         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
        0.99         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       13.02         1.02        12.00        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
       38.93        40.96        38.01         0.49         0.69         0.72 
TCGA-AH-6897 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        4.60         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 
        8.98         6.97        27.91         6.97        19.99         3.98 
TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF 
        5.00       119.51        41.33        57.24       121.08        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 
       51.48        32.58         0.49         2.40         7.63         2.17 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
        8.22         0.46         3.98         0.66         6.90         7.10 
TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        6.15         3.98         2.73         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        47.70        47.08        20.91 

$`AMP PEAK 14(13Q12.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3400 TCGA-AF-5654 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 
       19.53        12.72         8.45         0.99         1.02         1.02 
TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A01J TCGA-AG-A01N 
        0.99         1.02        20.94        13.91         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02N TCGA-AH-6547 TCGA-AH-6903 
       70.03        63.98        10.98        61.94         1.45         1.81 
TCGA-BM-6198 TCGA-CI-6620 TCGA-DC-6155 TCGA-DC-6681 TCGA-DT-5265 TCGA-EI-6507 
       10.19         6.02         7.36         5.92         0.26         0.16 
TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
        3.55         5.23         7.79         0.53         1.08 

      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                          0.39                           0.16 
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                        121.08                          70.03 
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                          6.92                           5.92 
[1] "0.4 - 121.1 (6.9)" "0.2 - 70.0 (5.9)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK 14(13Q12.2) CNV" 
[1] "hr="     "3.1e+08"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) CNV         52   68
  AMP PEAK 14(13Q12.2) WILD-TYPE   22   20
        clus
vv       AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  FEMALE                       52                             22
  MALE                         68                             20
D14V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) CNV        111    5
  AMP PEAK 14(13Q12.2) WILD-TYPE   32    8
                                clus
vv                               AMP PEAK 14(13Q12.2) CNV
  RECTAL ADENOCARCINOMA                               111
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               AMP PEAK 14(13Q12.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      32
  RECTAL MUCINOUS ADENOCARCINOMA                              8
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 14(13Q12.2) CNV        7 19 79 14
  AMP PEAK 14(13Q12.2) WILD-TYPE  2 10 30  0
D14V5, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  T1                        7                              2
  T2                       19                             10
  T3                       79                             30
  T4                       14                              0
                                vv
clus                             N0 N1 N2
  AMP PEAK 14(13Q12.2) CNV       54 36 28
  AMP PEAK 14(13Q12.2) WILD-TYPE 29  9  4
D14V6, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  N0                       54                             29
  N1                       36                              9
  N2                       28                              4
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 14(13Q12.2) CNV       89 17   1 12
  AMP PEAK 14(13Q12.2) WILD-TYPE 34  5   1  1
D14V7, multiclass
     clus
vv    AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  M0                        89                             34
  M1                        17                              5
  M1A                        1                              1
  MX                        12                              1
                                vv
clus                              I II III IV
  AMP PEAK 14(13Q12.2) CNV       21 33  41 19
  AMP PEAK 14(13Q12.2) WILD-TYPE  9 17   9  6
D14V8, multiclass
     clus
vv    AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  I                         21                              9
  II                        33                             17
  III                       41                              9
  IV                        19                              6
D14V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) CNV          3  117
  AMP PEAK 14(13Q12.2) WILD-TYPE    3   39
     clus
vv    AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  NO                         3                              3
  YES                      117                             39
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 14(13Q12.2) CNV       86  2  9  2
  AMP PEAK 14(13Q12.2) WILD-TYPE 35  0  3  1
D14V10, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  R0                       86                             35
  R1                        2                              0
  R2                        9                              3
  RX                        2                              1
D14V11, continuous

Clustering(15) Variable = Amp Peak 15(13q22.1)
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(13Q22.1) CNV       83 11
  AMP PEAK 15(13Q22.1) WILD-TYPE 31  0
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                            94                             31 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                            11                              0 
$`AMP PEAK 15(13Q22.1) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        10.39        14.50         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-3742 
        1.02         1.02         2.01         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 
        1.02         0.99         6.02        25.94        23.01        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 
       13.02         1.02        12.00        70.03        63.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 
       49.94         1.94        38.93        38.01         0.49         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
        0.72         4.60         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        5.03         8.98         6.97        27.91         6.97        19.99 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        3.98         5.00         0.26       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 
      121.08        24.13        51.48        32.58         0.49         7.63 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
        8.22         0.46         3.98         0.66         6.90         7.10 
TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 
        6.15         3.98         2.73         2.76         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 
        2.17         0.39         1.02         0.66         0.69         0.76 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.70        47.08        20.91 

$`AMP PEAK 15(13Q22.1) WILD-TYPE`
TCGA-AF-3400 TCGA-AF-5654 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3878 
       12.72         8.45         0.99         1.02         1.02         0.99 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01N 
        1.02        20.94        13.91        17.03         1.02        12.00 
TCGA-AG-A020 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6903 TCGA-BM-6198 
       10.98        61.94        40.96         1.45         1.81        10.19 
TCGA-CI-6620 TCGA-DC-6155 TCGA-DC-6681 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 
        6.02         7.36         5.92         2.40         0.16         2.17 
TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6814 TCGA-F5-6861 
        3.55         5.23         7.79         2.04         0.53         1.08 
TCGA-F5-6864 
        0.46 

      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                          0.26                           0.16 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                        121.08                          61.94 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                          6.97                           3.55 
[1] "0.3 - 121.1 (7.0)" "0.2 - 61.9 (3.5)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6641 
      "AMP PEAK 15(13Q22.1) CNV" 
[1] "hr="     "2.3e+08"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV         51   66
  AMP PEAK 15(13Q22.1) WILD-TYPE   23   22
        clus
vv       AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  FEMALE                       51                             23
  MALE                         66                             22
D15V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV        109    4
  AMP PEAK 15(13Q22.1) WILD-TYPE   34    9
                                clus
vv                               AMP PEAK 15(13Q22.1) CNV
  RECTAL ADENOCARCINOMA                               109
  RECTAL MUCINOUS ADENOCARCINOMA                        4
                                clus
vv                               AMP PEAK 15(13Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      34
  RECTAL MUCINOUS ADENOCARCINOMA                              9
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 15(13Q22.1) CNV        7 18 78 13
  AMP PEAK 15(13Q22.1) WILD-TYPE  2 11 31  1
D15V5, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  T1                        7                              2
  T2                       18                             11
  T3                       78                             31
  T4                       13                              1
                                vv
clus                             N0 N1 N2
  AMP PEAK 15(13Q22.1) CNV       54 35 26
  AMP PEAK 15(13Q22.1) WILD-TYPE 29 10  6
D15V6, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  N0                       54                             29
  N1                       35                             10
  N2                       26                              6
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 15(13Q22.1) CNV       87 16   1 12
  AMP PEAK 15(13Q22.1) WILD-TYPE 36  6   1  1
D15V7, multiclass
     clus
vv    AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  M0                        87                             36
  M1                        16                              6
  M1A                        1                              1
  MX                        12                              1
                                vv
clus                              I II III IV
  AMP PEAK 15(13Q22.1) CNV       20 34  40 17
  AMP PEAK 15(13Q22.1) WILD-TYPE 10 16  10  8
D15V8, multiclass
     clus
vv    AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  I                         20                             10
  II                        34                             16
  III                       40                             10
  IV                        17                              8
D15V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV          4  113
  AMP PEAK 15(13Q22.1) WILD-TYPE    2   43
     clus
vv    AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  NO                         4                              2
  YES                      113                             43
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 15(13Q22.1) CNV       83  2  8  3
  AMP PEAK 15(13Q22.1) WILD-TYPE 38  0  4  0
D15V10, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  R0                       83                             38
  R1                        2                              0
  R2                        8                              4
  RX                        3                              0
D15V11, continuous

Clustering(16) Variable = Amp Peak 16(15q26.1)
D16V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 16(15Q26.1) CNV        11   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 103  10
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                            12                            113 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                             1                             10 
$`AMP PEAK 16(15Q26.1) CNV`
TCGA-AF-3400 TCGA-AG-3587 TCGA-AG-4001 TCGA-AG-A01W TCGA-AH-6643 TCGA-BM-6198 
       12.72         1.02         1.02        70.03         0.69        10.19 
TCGA-CI-6623 TCGA-CL-5918 TCGA-DY-A1DC TCGA-EI-7004 TCGA-F5-6863 TCGA-F5-6864 
        9.37         7.99        41.33         2.04         0.76         0.46 

$`AMP PEAK 16(15Q26.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       17.62        10.39        14.50         8.45         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 
        7.33         1.02         1.02         2.01         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.95         1.02         0.99         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       63.98        10.98        51.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 
       61.94        40.96        38.01         0.49         1.45         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 
        4.60         1.81         6.02         6.02         6.94         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       13.97        60.00        10.98        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        8.98         7.36         6.97        27.91         6.97        19.99 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DD 
        5.92         3.98         5.00         0.26       119.51        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      121.08        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        7.63         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.66         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 
        2.73         5.23         7.79         2.76         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.17         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        1.08        18.25        47.70        47.08        20.91 

      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                          0.46                           0.16 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                         70.03                         121.08 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                         5.015                          6.350 
[1] "0.5 - 70.0 (5.0)"  "0.2 - 121.1 (6.3)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) CNV         10    5
  AMP PEAK 16(15Q26.1) WILD-TYPE   64   83
        clus
vv       AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  FEMALE                       10                             64
  MALE                          5                             83
D16V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) CNV         13    2
  AMP PEAK 16(15Q26.1) WILD-TYPE  130   11
                                clus
vv                               AMP PEAK 16(15Q26.1) CNV
  RECTAL ADENOCARCINOMA                                13
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               AMP PEAK 16(15Q26.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     130
  RECTAL MUCINOUS ADENOCARCINOMA                             11
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 16(15Q26.1) CNV        1  1 10  3
  AMP PEAK 16(15Q26.1) WILD-TYPE  8 28 99 11
D16V5, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  T1                        1                              8
  T2                        1                             28
  T3                       10                             99
  T4                        3                             11
                                vv
clus                             N0 N1 N2
  AMP PEAK 16(15Q26.1) CNV        7  3  5
  AMP PEAK 16(15Q26.1) WILD-TYPE 76 42 27
D16V6, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  N0                        7                             76
  N1                        3                             42
  N2                        5                             27
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK 16(15Q26.1) CNV        13   0   0   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 110  22   2  12
D16V7, multiclass
     clus
vv    AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  M0                        13                            110
  M1                         0                             22
  M1A                        0                              2
  MX                         1                             12
                                vv
clus                              I II III IV
  AMP PEAK 16(15Q26.1) CNV        2  5   7  1
  AMP PEAK 16(15Q26.1) WILD-TYPE 28 45  43 24
D16V8, multiclass
     clus
vv    AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  I                          2                             28
  II                         5                             45
  III                        7                             43
  IV                         1                             24
D16V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) CNV          2   13
  AMP PEAK 16(15Q26.1) WILD-TYPE    4  143
     clus
vv    AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  NO                         2                              4
  YES                       13                            143
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 16(15Q26.1) CNV        12   0   0   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 109   2  12   2
D16V10, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  R0                       12                            109
  R1                        0                              2
  R2                        0                             12
  RX                        1                              2
D16V11, continuous

Clustering(17) Variable = Amp Peak 17(16p11.2)
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(16P11.2) CNV       32  4
  AMP PEAK 17(16P11.2) WILD-TYPE 82  7
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                            36                             89 
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                             4                              7 
$`AMP PEAK 17(16P11.2) CNV`
TCGA-AF-2689 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3582 
       15.85        17.62        10.39         7.59         6.35         1.02 
TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A014 
        1.02         1.02         1.02         1.02         0.99        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A02G TCGA-AG-A032 
       13.02         1.02        12.00        12.00        38.93        38.01 
TCGA-AH-6644 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 TCGA-DC-4749 TCGA-DC-5869 
        0.72         6.94         9.37        60.00        11.01         5.03 
TCGA-DC-6154 TCGA-DC-6683 TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6512 
        8.98         5.00        24.13        51.48         0.49         0.66 
TCGA-EI-6514 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6863 
        7.10         3.39         2.17         0.39         1.02         0.76 

$`AMP PEAK 17(16P11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 
       14.50         8.45         7.33         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         0.95         0.99         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        0.99         0.99         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01W 
        6.02        25.94        23.01        17.03         1.02        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N 
       63.98        10.98        51.98        49.94         1.94        61.94 
TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 
       40.96         0.49         1.45         0.69         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 
       10.19         6.02         6.02         4.70        13.97         7.99 
TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
       10.98         9.99         7.36         6.97        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         3.98         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 
       57.24       121.08        32.58         2.40         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 
        2.17         8.22         0.46         3.98         6.90         6.15 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 
        3.55         3.98         2.73         5.23         7.79         2.76 
TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        2.04         0.85         0.66         0.69         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                          0.39                           0.16 
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                         60.00                         121.08 
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                         6.645                          6.150 
[1] "0.4 - 60.0 (6.6)"  "0.2 - 121.1 (6.2)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" 
[1] "hr=" "2.3"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) CNV         20   25
  AMP PEAK 17(16P11.2) WILD-TYPE   54   63
        clus
vv       AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  FEMALE                       20                             54
  MALE                         25                             63
D17V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) CNV         45    0
  AMP PEAK 17(16P11.2) WILD-TYPE   98   13
                                clus
vv                               AMP PEAK 17(16P11.2) CNV
  RECTAL ADENOCARCINOMA                                45
  RECTAL MUCINOUS ADENOCARCINOMA                        0
                                clus
vv                               AMP PEAK 17(16P11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      98
  RECTAL MUCINOUS ADENOCARCINOMA                             13
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 17(16P11.2) CNV        2  8 29  6
  AMP PEAK 17(16P11.2) WILD-TYPE  7 21 80  8
D17V5, multiclass
    clus
vv   AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  T1                        2                              7
  T2                        8                             21
  T3                       29                             80
  T4                        6                              8
                                vv
clus                             N0 N1 N2
  AMP PEAK 17(16P11.2) CNV       18 17  9
  AMP PEAK 17(16P11.2) WILD-TYPE 65 28 23
D17V6, multiclass
    clus
vv   AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  N0                       18                             65
  N1                       17                             28
  N2                        9                             23
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 17(16P11.2) CNV       30 11   0  4
  AMP PEAK 17(16P11.2) WILD-TYPE 93 11   2  9
D17V7, multiclass
     clus
vv    AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  M0                        30                             93
  M1                        11                             11
  M1A                        0                              2
  MX                         4                              9
                                vv
clus                              I II III IV
  AMP PEAK 17(16P11.2) CNV        7 10  16  9
  AMP PEAK 17(16P11.2) WILD-TYPE 23 40  34 16
D17V8, multiclass
     clus
vv    AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  I                          7                             23
  II                        10                             40
  III                       16                             34
  IV                         9                             16
D17V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) CNV          2   43
  AMP PEAK 17(16P11.2) WILD-TYPE    4  113
     clus
vv    AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  NO                         2                              4
  YES                       43                            113
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 17(16P11.2) CNV       29  0  7  1
  AMP PEAK 17(16P11.2) WILD-TYPE 92  2  5  2
D17V10, multiclass
    clus
vv   AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  R0                       29                             92
  R1                        0                              2
  R2                        7                              5
  RX                        1                              2
D17V11, continuous

Clustering(18) Variable = Amp Peak 18(17q12)
D18V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 18(17Q12) CNV       29  2
  AMP PEAK 18(17Q12) WILD-TYPE 85  9
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          31                           94 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                           2                            9 
$`AMP PEAK 18(17Q12) CNV`
TCGA-AF-2690 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3742 TCGA-AG-4001 
       11.77         1.02         1.02         1.02         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01N TCGA-AG-A01Y 
        1.02         1.02        15.91         1.02        12.00        63.98 
TCGA-AG-A023 TCGA-AH-6643 TCGA-AH-6897 TCGA-CI-6619 TCGA-CI-6623 TCGA-DC-6154 
       51.98         0.69         4.60         6.02         9.37         8.98 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DG TCGA-EI-6509 TCGA-EI-6510 
        3.98         5.00         0.26        51.48         8.22         0.46 
TCGA-EI-6514 TCGA-EI-7002 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6864 TCGA-G5-6235 
        7.10         2.76         1.02         0.69         0.46        47.70 
TCGA-G5-6641 
       20.91 

$`AMP PEAK 18(17Q12) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        15.85        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       17.62        10.39        14.50         8.45         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        7.33         2.01         0.99         1.02         0.95         1.02 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 
       17.03        13.02         1.02        12.00        70.03        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 
        0.49         1.45         0.72         1.81        10.19         6.02 
TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        6.94         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
       11.01         9.99         5.03         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        6.97        19.99         5.92       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
      121.08        24.13        32.58         0.49         2.40         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 
        0.16         2.17         3.98         0.66         6.90         6.15 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 
        3.55         3.98         2.73         5.23         7.79         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 
        3.39         0.85         2.17         0.39         0.66         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6572 
        1.08         0.76        18.25        47.08 

      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                        0.26                         0.16 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                       63.98                       121.08 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                        3.98                         6.97 
[1] "0.3 - 64.0 (4.0)"  "0.2 - 121.1 (7.0)"
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3727                   TCGA-AG-3731 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3742                   TCGA-AG-3878 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4007                   TCGA-AG-4008 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A011                   TCGA-AG-A014 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AH-6644                   TCGA-AH-6897 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6619                   TCGA-CI-6620 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6622                   TCGA-CI-6623 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6156                   TCGA-DC-6157 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DC-6683                   TCGA-DT-5265 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5831                   TCGA-EI-6506 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6509                   TCGA-EI-6510 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6513                   TCGA-EI-6514 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6881                   TCGA-EI-6882 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6465                   TCGA-F5-6571 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6702                   TCGA-F5-6810 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6811                   TCGA-F5-6812 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6813                   TCGA-F5-6814 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6864                   TCGA-G5-6233 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6641 
      "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3727                   TCGA-AG-3731 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3742                   TCGA-AG-3878 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4007                   TCGA-AG-4008 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A011                   TCGA-AG-A014 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AH-6644                   TCGA-AH-6897 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6619                   TCGA-CI-6620 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6622                   TCGA-CI-6623 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6156                   TCGA-DC-6157 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DC-6683                   TCGA-DT-5265 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5831                   TCGA-EI-6506 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6509                   TCGA-EI-6510 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6513                   TCGA-EI-6514 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6881                   TCGA-EI-6882 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6465                   TCGA-F5-6571 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6702                   TCGA-F5-6810 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6811                   TCGA-F5-6812 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6813                   TCGA-F5-6814 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6864                   TCGA-G5-6233 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6641 
      "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3727                   TCGA-AG-3731 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3742                   TCGA-AG-3878 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4007                   TCGA-AG-4008 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A011                   TCGA-AG-A014 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AH-6644                   TCGA-AH-6897 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6619                   TCGA-CI-6620 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6622                   TCGA-CI-6623 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6156                   TCGA-DC-6157 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DC-6683                   TCGA-DT-5265 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5831                   TCGA-EI-6506 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6509                   TCGA-EI-6510 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6513                   TCGA-EI-6514 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6881                   TCGA-EI-6882 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6465                   TCGA-F5-6571 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6702                   TCGA-F5-6810 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6811                   TCGA-F5-6812 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6813                   TCGA-F5-6814 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6864                   TCGA-G5-6233 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-G5-6641 
      "AMP PEAK 18(17Q12) CNV" 
[1] "hr=" "1.4"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) CNV         16   27
  AMP PEAK 18(17Q12) WILD-TYPE   58   61
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  FEMALE                     16                           58
  MALE                       27                           61
D18V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) CNV         41    2
  AMP PEAK 18(17Q12) WILD-TYPE  102   11
                                clus
vv                               AMP PEAK 18(17Q12) CNV
  RECTAL ADENOCARCINOMA                              41
  RECTAL MUCINOUS ADENOCARCINOMA                      2
                                clus
vv                               AMP PEAK 18(17Q12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   102
  RECTAL MUCINOUS ADENOCARCINOMA                           11
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 18(17Q12) CNV        3  8 27  5
  AMP PEAK 18(17Q12) WILD-TYPE  6 21 82  9
D18V5, multiclass
    clus
vv   AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  T1                      3                            6
  T2                      8                           21
  T3                     27                           82
  T4                      5                            9
                              vv
clus                           N0 N1 N2
  AMP PEAK 18(17Q12) CNV       23  9 11
  AMP PEAK 18(17Q12) WILD-TYPE 60 36 21
D18V6, multiclass
    clus
vv   AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  N0                     23                           60
  N1                      9                           36
  N2                     11                           21
                              vv
clus                           M0 M1 M1A MX
  AMP PEAK 18(17Q12) CNV       30  9   0  4
  AMP PEAK 18(17Q12) WILD-TYPE 93 13   2  9
D18V7, multiclass
     clus
vv    AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  M0                      30                           93
  M1                       9                           13
  M1A                      0                            2
  MX                       4                            9
                              vv
clus                            I II III IV
  AMP PEAK 18(17Q12) CNV        8 13  11 10
  AMP PEAK 18(17Q12) WILD-TYPE 22 37  39 15
D18V8, multiclass
     clus
vv    AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  I                        8                           22
  II                      13                           37
  III                     11                           39
  IV                      10                           15
D18V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) CNV          0   43
  AMP PEAK 18(17Q12) WILD-TYPE    6  113
     clus
vv    AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  NO                       0                            6
  YES                     43                          113
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 18(17Q12) CNV       30  1  6  1
  AMP PEAK 18(17Q12) WILD-TYPE 91  1  6  2
D18V10, multiclass
    clus
vv   AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  R0                     30                           91
  R1                      1                            1
  R2                      6                            6
  RX                      1                            2
D18V11, continuous

Clustering(19) Variable = Amp Peak 19(17q24.1)
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(17Q24.1) CNV       26  2
  AMP PEAK 19(17Q24.1) WILD-TYPE 88  9
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                            28                             97 
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                             2                              9 
$`AMP PEAK 19(17Q24.1) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AG-3581 TCGA-AG-3587 TCGA-AG-4001 
       15.85        11.77        13.55         1.02         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01N TCGA-AG-A023 
        1.02         1.02        15.91         1.02        12.00        51.98 
TCGA-AH-6643 TCGA-AH-6897 TCGA-CI-6619 TCGA-DC-6154 TCGA-DC-6682 TCGA-DC-6683 
        0.69         4.60         6.02         8.98         3.98         5.00 
TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6510 TCGA-EI-6514 
      121.08        51.48         0.49         2.40         0.46         7.10 
TCGA-EI-7002 TCGA-F5-6811 TCGA-F5-6864 TCGA-G5-6235 
        2.76         1.02         0.46        47.70 

$`AMP PEAK 19(17Q24.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       19.53        10.62        19.10        12.72        17.62        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 
       14.50         8.45         7.59         6.35         7.33         1.02 
TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        2.01         0.99         1.02         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       17.03        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6903 TCGA-BM-6198 
       38.01         0.49         1.45         0.72         1.81        10.19 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 
        7.99        10.98        11.01         9.99         5.03         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 
        6.97        27.91         6.97        19.99         5.92         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EI-6506 
      119.51        41.33        57.24        24.13        32.58         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        0.16         2.17         8.22         3.98         0.66         6.90 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
        6.15         3.55         3.98         2.73         5.23         7.79 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 
        2.04         3.39         0.85         2.17         0.39         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6572 
        0.69         0.53         1.08         0.76        18.25        47.08 
TCGA-G5-6641 
       20.91 

      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                          0.46                           0.16 
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                        121.08                         119.51 
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                          4.29                           6.97 
[1] "0.5 - 121.1 (4.3)" "0.2 - 119.5 (7.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) CNV         17   20
  AMP PEAK 19(17Q24.1) WILD-TYPE   57   68
        clus
vv       AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  FEMALE                       17                             57
  MALE                         20                             68
D19V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) CNV         36    0
  AMP PEAK 19(17Q24.1) WILD-TYPE  107   13
                                clus
vv                               AMP PEAK 19(17Q24.1) CNV
  RECTAL ADENOCARCINOMA                                36
  RECTAL MUCINOUS ADENOCARCINOMA                        0
                                clus
vv                               AMP PEAK 19(17Q24.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     107
  RECTAL MUCINOUS ADENOCARCINOMA                             13
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 19(17Q24.1) CNV        0  7 25  5
  AMP PEAK 19(17Q24.1) WILD-TYPE  9 22 84  9
D19V5, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  T1                        0                              9
  T2                        7                             22
  T3                       25                             84
  T4                        5                              9
                                vv
clus                             N0 N1 N2
  AMP PEAK 19(17Q24.1) CNV       20  7 10
  AMP PEAK 19(17Q24.1) WILD-TYPE 63 38 22
D19V6, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  N0                       20                             63
  N1                        7                             38
  N2                       10                             22
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 19(17Q24.1) CNV       25  9   0  3
  AMP PEAK 19(17Q24.1) WILD-TYPE 98 13   2 10
D19V7, multiclass
     clus
vv    AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  M0                        25                             98
  M1                         9                             13
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                              I II III IV
  AMP PEAK 19(17Q24.1) CNV        5 13   8  9
  AMP PEAK 19(17Q24.1) WILD-TYPE 25 37  42 16
D19V8, multiclass
     clus
vv    AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  I                          5                             25
  II                        13                             37
  III                        8                             42
  IV                         9                             16
D19V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) CNV          0   37
  AMP PEAK 19(17Q24.1) WILD-TYPE    6  119
     clus
vv    AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  NO                         0                              6
  YES                       37                            119
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 19(17Q24.1) CNV       26  1  5  0
  AMP PEAK 19(17Q24.1) WILD-TYPE 95  1  7  3
D19V10, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  R0                       26                             95
  R1                        1                              1
  R2                        5                              7
  RX                        0                              3
D19V11, continuous

Clustering(20) Variable = Amp Peak 20(19p13.2)
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(19P13.2) CNV       21  4
  AMP PEAK 20(19P13.2) WILD-TYPE 93  7
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                            25                            100 
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                             4                              7 
$`AMP PEAK 20(19P13.2) CNV`
TCGA-AF-2690 TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3878 TCGA-AG-3999 TCGA-AG-4001 
       11.77        10.39         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A026 TCGA-AG-A032 
        1.02         0.99        12.00        12.00         1.94        38.01 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-6154 TCGA-DC-6157 TCGA-DY-A1DD TCGA-DY-A1DF 
       10.98        11.01         8.98        27.91        57.24        24.13 
TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6883 TCGA-EI-7002 
        0.49         7.63         0.66         7.10         3.98         2.76 
TCGA-F5-6863 
        0.76 

$`AMP PEAK 20(19P13.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        15.85        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01W 
       17.03        15.91        13.02         1.02         1.02        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        51.98        49.94        38.93        61.94 
TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       40.96         0.49         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        1.81        10.19         6.02         6.02         6.94         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-5337 TCGA-DC-5869 
        4.70        13.97        60.00         7.99         9.99         5.03 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 
        7.36         6.97         6.97        19.99         5.92         3.98 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DG 
        5.00         0.26       119.51        41.33       121.08        51.48 
TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
       32.58         2.40         0.16         2.17         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 
        3.98         6.90         6.15         3.55         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
        7.79         2.04         3.39         0.85         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 
        1.02         0.66         0.69         0.53         1.08         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.70        47.08        20.91 

      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                          0.49                           0.16 
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                         57.24                         121.08 
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                          7.10                           6.25 
[1] "0.5 - 57.2 (7.1)"  "0.2 - 121.1 (6.2)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" 
[1] "hr=" "3.8"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) CNV         16   16
  AMP PEAK 20(19P13.2) WILD-TYPE   58   72
        clus
vv       AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  FEMALE                       16                             58
  MALE                         16                             72
D20V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) CNV         32    0
  AMP PEAK 20(19P13.2) WILD-TYPE  111   13
                                clus
vv                               AMP PEAK 20(19P13.2) CNV
  RECTAL ADENOCARCINOMA                                32
  RECTAL MUCINOUS ADENOCARCINOMA                        0
                                clus
vv                               AMP PEAK 20(19P13.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     111
  RECTAL MUCINOUS ADENOCARCINOMA                             13
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 20(19P13.2) CNV        0  5 22  5
  AMP PEAK 20(19P13.2) WILD-TYPE  9 24 87  9
D20V5, multiclass
    clus
vv   AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  T1                        0                              9
  T2                        5                             24
  T3                       22                             87
  T4                        5                              9
                                vv
clus                             N0 N1 N2
  AMP PEAK 20(19P13.2) CNV       14 10  8
  AMP PEAK 20(19P13.2) WILD-TYPE 69 35 24
D20V6, multiclass
    clus
vv   AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  N0                       14                             69
  N1                       10                             35
  N2                        8                             24
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 20(19P13.2) CNV       25  6   0  1
  AMP PEAK 20(19P13.2) WILD-TYPE 98 16   2 12
D20V7, multiclass
     clus
vv    AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  M0                        25                             98
  M1                         6                             16
  M1A                        0                              2
  MX                         1                             12
                                vv
clus                              I II III IV
  AMP PEAK 20(19P13.2) CNV        4  9  12  5
  AMP PEAK 20(19P13.2) WILD-TYPE 26 41  38 20
D20V8, multiclass
     clus
vv    AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  I                          4                             26
  II                         9                             41
  III                       12                             38
  IV                         5                             20
D20V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) CNV          0   32
  AMP PEAK 20(19P13.2) WILD-TYPE    6  124
     clus
vv    AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  NO                         0                              6
  YES                       32                            124
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 20(19P13.2) CNV       25  1  3  0
  AMP PEAK 20(19P13.2) WILD-TYPE 96  1  9  3
D20V10, multiclass
    clus
vv   AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  R0                       25                             96
  R1                        1                              1
  R2                        3                              9
  RX                        0                              3
D20V11, continuous

Clustering(21) Variable = Amp Peak 21(20q11.21)
D21V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 21(20Q11.21) CNV       102  11
  AMP PEAK 21(20Q11.21) WILD-TYPE  12   0
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                            113                              12 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                             11                               0 
$`AMP PEAK 21(20Q11.21) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        19.10        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.95         1.02         0.99         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.02         1.02         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        51.98         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.01         0.49         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
        1.81        10.19         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        5.03         8.98         7.36         6.97        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         3.98         5.00       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       57.24       121.08        24.13        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        2.40         7.63         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 
        0.66         6.90         7.10         6.15         3.98         2.73 
TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
        5.23         2.76         3.39         0.85         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        1.02         0.66         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

$`AMP PEAK 21(20Q11.21) WILD-TYPE`
TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 TCGA-AG-A02N 
       13.55        12.72         1.02        20.94        49.94        61.94 
TCGA-CI-6620 TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7004 
        6.02         0.26         0.16         3.55         7.79         2.04 

      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                           0.39                            0.16 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                         121.08                           61.94 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                          6.350                           6.905 
[1] "0.4 - 121.1 (6.3)" "0.2 - 61.9 (6.9)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 21(20Q11.21) CNV" 
[1] "hr="     "2.2e+08"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) CNV         65   78
  AMP PEAK 21(20Q11.21) WILD-TYPE    9   10
        clus
vv       AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  FEMALE                        65                               9
  MALE                          78                              10
D21V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) CNV        132    7
  AMP PEAK 21(20Q11.21) WILD-TYPE   11    6
                                clus
vv                               AMP PEAK 21(20Q11.21) CNV
  RECTAL ADENOCARCINOMA                                132
  RECTAL MUCINOUS ADENOCARCINOMA                         7
                                clus
vv                               AMP PEAK 21(20Q11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       11
  RECTAL MUCINOUS ADENOCARCINOMA                               6
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 21(20Q11.21) CNV        7 27 95 13
  AMP PEAK 21(20Q11.21) WILD-TYPE  2  2 14  1
D21V5, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  T1                         7                               2
  T2                        27                               2
  T3                        95                              14
  T4                        13                               1
                                 vv
clus                              N0 N1 N2
  AMP PEAK 21(20Q11.21) CNV       69 43 29
  AMP PEAK 21(20Q11.21) WILD-TYPE 14  2  3
D21V6, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  N0                        69                              14
  N1                        43                               2
  N2                        29                               3
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 21(20Q11.21) CNV       106  20   2  13
  AMP PEAK 21(20Q11.21) WILD-TYPE  17   2   0   0
D21V7, multiclass
     clus
vv    AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  M0                        106                              17
  M1                         20                               2
  M1A                         2                               0
  MX                         13                               0
                                 vv
clus                               I II III IV
  AMP PEAK 21(20Q11.21) CNV       26 40  48 22
  AMP PEAK 21(20Q11.21) WILD-TYPE  4 10   2  3
D21V8, multiclass
     clus
vv    AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  I                          26                               4
  II                         40                              10
  III                        48                               2
  IV                         22                               3
D21V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) CNV          5  138
  AMP PEAK 21(20Q11.21) WILD-TYPE    1   18
     clus
vv    AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  NO                          5                               1
  YES                       138                              18
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 21(20Q11.21) CNV       106   2  11   2
  AMP PEAK 21(20Q11.21) WILD-TYPE  15   0   1   1
D21V10, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  R0                       106                              15
  R1                         2                               0
  R2                        11                               1
  RX                         2                               1
D21V11, continuous

Clustering(22) Variable = Amp Peak 22(20q11.23)
D22V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 22(20Q11.23) CNV       103  11
  AMP PEAK 22(20Q11.23) WILD-TYPE  11   0
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                            114                              11 
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                             11                               0 
$`AMP PEAK 22(20Q11.23) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        19.10        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.95         1.02         0.99         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.02         1.02         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        51.98         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.01         0.49         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        1.81        10.19         6.02         6.02         6.94         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        4.70        13.97        60.00         7.99        10.98        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
        9.99         5.03         8.98         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA 
        6.97        19.99         5.92         3.98         5.00       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
       41.33        57.24       121.08        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        0.49         2.40         7.63         2.17         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 
        3.98         0.66         6.90         7.10         6.15         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        2.73         5.23         2.76         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        47.70        47.08        20.91 

$`AMP PEAK 22(20Q11.23) WILD-TYPE`
TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 TCGA-AG-A02N 
       13.55        12.72         1.02        20.94        49.94        61.94 
TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7004 
        0.26         0.16         3.55         7.79         2.04 

      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                           0.39                            0.16 
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                         121.08                           61.94 
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                           6.25                            7.79 
[1] "0.4 - 121.1 (6.2)" "0.2 - 61.9 (7.8)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 22(20Q11.23) CNV" 
[1] "hr="     "2.2e+08"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) CNV         66   78
  AMP PEAK 22(20Q11.23) WILD-TYPE    8   10
        clus
vv       AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  FEMALE                        66                               8
  MALE                          78                              10
D22V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) CNV        133    7
  AMP PEAK 22(20Q11.23) WILD-TYPE   10    6
                                clus
vv                               AMP PEAK 22(20Q11.23) CNV
  RECTAL ADENOCARCINOMA                                133
  RECTAL MUCINOUS ADENOCARCINOMA                         7
                                clus
vv                               AMP PEAK 22(20Q11.23) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       10
  RECTAL MUCINOUS ADENOCARCINOMA                               6
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 22(20Q11.23) CNV        7 27 96 13
  AMP PEAK 22(20Q11.23) WILD-TYPE  2  2 13  1
D22V5, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  T1                         7                               2
  T2                        27                               2
  T3                        96                              13
  T4                        13                               1
                                 vv
clus                              N0 N1 N2
  AMP PEAK 22(20Q11.23) CNV       69 44 29
  AMP PEAK 22(20Q11.23) WILD-TYPE 14  1  3
D22V6, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  N0                        69                              14
  N1                        44                               1
  N2                        29                               3
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 22(20Q11.23) CNV       106  21   2  13
  AMP PEAK 22(20Q11.23) WILD-TYPE  17   1   0   0
D22V7, multiclass
     clus
vv    AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  M0                        106                              17
  M1                         21                               1
  M1A                         2                               0
  MX                         13                               0
                                 vv
clus                               I II III IV
  AMP PEAK 22(20Q11.23) CNV       26 40  48 23
  AMP PEAK 22(20Q11.23) WILD-TYPE  4 10   2  2
D22V8, multiclass
     clus
vv    AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  I                          26                               4
  II                         40                              10
  III                        48                               2
  IV                         23                               2
D22V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) CNV          5  139
  AMP PEAK 22(20Q11.23) WILD-TYPE    1   17
     clus
vv    AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  NO                          5                               1
  YES                       139                              17
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 22(20Q11.23) CNV       106   2  11   2
  AMP PEAK 22(20Q11.23) WILD-TYPE  15   0   1   1
D22V10, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  R0                       106                              15
  R1                         2                               0
  R2                        11                               1
  RX                         2                               1
D22V11, continuous

Clustering(23) Variable = Amp Peak 23(20q13.31)
D23V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 23(20Q13.31) CNV       104  11
  AMP PEAK 23(20Q13.31) WILD-TYPE  10   0
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                            115                              10 
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                             11                               0 
$`AMP PEAK 23(20Q13.31) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       17.62        10.39        14.50         8.45         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
        7.33         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.95         1.02         0.99         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        0.99        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        51.98         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 
       40.96        38.01         0.49         1.45         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        4.60         1.81        10.19         6.02         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       11.01         9.99         5.03         8.98         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
       27.91         6.97        19.99         5.92         3.98         5.00 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      119.51        41.33        57.24       121.08        24.13        51.48 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
       32.58         0.49         2.40         7.63         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
        0.46         3.98         0.66         6.90         7.10         6.15 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 
        3.98         2.73         5.23         2.76         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.17         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.76         0.46        18.25        47.70        47.08 
TCGA-G5-6641 
       20.91 

$`AMP PEAK 23(20Q13.31) WILD-TYPE`
TCGA-AF-3400 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 TCGA-AG-A02N TCGA-DT-5265 
       12.72         1.02        20.94        49.94        61.94         0.26 
TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7004 
        0.16         3.55         7.79         2.04 

      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                           0.39                            0.16 
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                         121.08                           61.94 
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                           6.35                            5.67 
[1] "0.4 - 121.1 (6.3)" "0.2 - 61.9 (5.7)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3726 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3727                      TCGA-AG-3731 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6903                      TCGA-BM-6198 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6622                      TCGA-CI-6623 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6861                      TCGA-F5-6863 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6641 
      "AMP PEAK 23(20Q13.31) CNV" 
[1] "hr="     "2.2e+08"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) CNV         67   78
  AMP PEAK 23(20Q13.31) WILD-TYPE    7   10
        clus
vv       AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  FEMALE                        67                               7
  MALE                          78                              10
D23V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) CNV        133    7
  AMP PEAK 23(20Q13.31) WILD-TYPE   10    6
                                clus
vv                               AMP PEAK 23(20Q13.31) CNV
  RECTAL ADENOCARCINOMA                                133
  RECTAL MUCINOUS ADENOCARCINOMA                         7
                                clus
vv                               AMP PEAK 23(20Q13.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       10
  RECTAL MUCINOUS ADENOCARCINOMA                               6
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 23(20Q13.31) CNV        7 27 97 13
  AMP PEAK 23(20Q13.31) WILD-TYPE  2  2 12  1
D23V5, multiclass
    clus
vv   AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  T1                         7                               2
  T2                        27                               2
  T3                        97                              12
  T4                        13                               1
                                 vv
clus                              N0 N1 N2
  AMP PEAK 23(20Q13.31) CNV       70 44 29
  AMP PEAK 23(20Q13.31) WILD-TYPE 13  1  3
D23V6, multiclass
    clus
vv   AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  N0                        70                              13
  N1                        44                               1
  N2                        29                               3
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 23(20Q13.31) CNV       107  21   2  13
  AMP PEAK 23(20Q13.31) WILD-TYPE  16   1   0   0
D23V7, multiclass
     clus
vv    AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  M0                        107                              16
  M1                         21                               1
  M1A                         2                               0
  MX                         13                               0
                                 vv
clus                               I II III IV
  AMP PEAK 23(20Q13.31) CNV       26 41  48 23
  AMP PEAK 23(20Q13.31) WILD-TYPE  4  9   2  2
D23V8, multiclass
     clus
vv    AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  I                          26                               4
  II                         41                               9
  III                        48                               2
  IV                         23                               2
D23V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) CNV          5  140
  AMP PEAK 23(20Q13.31) WILD-TYPE    1   16
     clus
vv    AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  NO                          5                               1
  YES                       140                              16
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 23(20Q13.31) CNV       107   2  11   2
  AMP PEAK 23(20Q13.31) WILD-TYPE  14   0   1   1
D23V10, multiclass
    clus
vv   AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  R0                       107                              14
  R1                         2                               0
  R2                        11                               1
  RX                         2                               1
D23V11, continuous

Clustering(24) Variable = Amp Peak 24(Xp22.2)
D24V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 24(XP22.2) CNV       22  3
  AMP PEAK 24(XP22.2) WILD-TYPE 92  8
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                           25                           100 
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                            3                             8 
$`AMP PEAK 24(XP22.2) CNV`
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3999 TCGA-AG-4022 TCGA-AG-A014 
       10.39         8.45         6.35         1.02         0.99        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A02N TCGA-AG-A032 
       13.02         1.02        12.00        63.98        61.94        38.01 
TCGA-AH-6644 TCGA-AH-6897 TCGA-DC-4745 TCGA-DC-6154 TCGA-DT-5265 TCGA-DY-A1DC 
        0.72         4.60        10.98         8.98         0.26        41.33 
TCGA-DY-A1H8 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6863 
       32.58         0.46         0.66         5.23         2.76         0.76 
TCGA-G5-6235 
       47.70 

$`AMP PEAK 24(XP22.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3581 
       12.72        17.62        14.50         7.59         7.33         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.99         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01L 
        6.02        25.94        23.01        17.03         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        10.98        51.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6903 TCGA-BM-6198 
       40.96         0.49         1.45         0.69         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 
       60.00         7.99        11.01         9.99         5.03         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 
        6.97        27.91         6.97        19.99         5.92         3.98 
TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
        5.00       119.51        57.24       121.08        24.13        51.48 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
        0.49         2.40         7.63         0.16         2.17         8.22 
TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        3.98         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        2.73         7.79         2.04         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.08        20.91 

      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                         0.26                          0.16 
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                        63.98                        121.08 
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                        8.450                         6.085 
[1] "0.3 - 64.0 (8.4)"  "0.2 - 121.1 (6.1)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
D24V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) CNV         20   13
  AMP PEAK 24(XP22.2) WILD-TYPE   54   75
        clus
vv       AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  FEMALE                      20                            54
  MALE                        13                            75
D24V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) CNV         32    1
  AMP PEAK 24(XP22.2) WILD-TYPE  111   12
                                clus
vv                               AMP PEAK 24(XP22.2) CNV
  RECTAL ADENOCARCINOMA                               32
  RECTAL MUCINOUS ADENOCARCINOMA                       1
                                clus
vv                               AMP PEAK 24(XP22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    111
  RECTAL MUCINOUS ADENOCARCINOMA                            12
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 24(XP22.2) CNV        1  8 21  3
  AMP PEAK 24(XP22.2) WILD-TYPE  8 21 88 11
D24V5, multiclass
    clus
vv   AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  T1                       1                             8
  T2                       8                            21
  T3                      21                            88
  T4                       3                            11
                               vv
clus                            N0 N1 N2
  AMP PEAK 24(XP22.2) CNV       15 11  6
  AMP PEAK 24(XP22.2) WILD-TYPE 68 34 26
D24V6, multiclass
    clus
vv   AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  N0                      15                            68
  N1                      11                            34
  N2                       6                            26
                               vv
clus                             M0  M1 M1A  MX
  AMP PEAK 24(XP22.2) CNV        23   7   0   3
  AMP PEAK 24(XP22.2) WILD-TYPE 100  15   2  10
D24V7, multiclass
     clus
vv    AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  M0                       23                           100
  M1                        7                            15
  M1A                       0                             2
  MX                        3                            10
                               vv
clus                             I II III IV
  AMP PEAK 24(XP22.2) CNV        5  8  11  7
  AMP PEAK 24(XP22.2) WILD-TYPE 25 42  39 18
D24V8, multiclass
     clus
vv    AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  I                         5                            25
  II                        8                            42
  III                      11                            39
  IV                        7                            18
D24V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) CNV          0   33
  AMP PEAK 24(XP22.2) WILD-TYPE    6  123
     clus
vv    AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  NO                        0                             6
  YES                      33                           123
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 24(XP22.2) CNV       24  1  4  1
  AMP PEAK 24(XP22.2) WILD-TYPE 97  1  8  2
D24V10, multiclass
    clus
vv   AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  R0                      24                            97
  R1                       1                             1
  R2                       4                             8
  RX                       1                             2
D24V11, continuous

Clustering(25) Variable = Amp Peak 25(Xq27.3)
D25V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 25(XQ27.3) CNV       25  2
  AMP PEAK 25(XQ27.3) WILD-TYPE 89  9
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                           27                            98 
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                            2                             9 
$`AMP PEAK 25(XQ27.3) CNV`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AG-3587 TCGA-AG-3726 
       13.55        19.10        10.39         8.45         1.02         1.02 
TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A014 TCGA-AG-A015 
        0.99         1.02         1.02         0.99        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6644 TCGA-CI-6623 TCGA-CL-5917 
        1.02        40.96        38.01         0.72         9.37        60.00 
TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6156 TCGA-DY-A1DD TCGA-DY-A1DE TCGA-EI-6885 
       10.98         8.98         6.97        57.24       121.08         5.23 
TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6863 
        3.39         0.39         0.76 

$`AMP PEAK 25(XQ27.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        12.72        17.62 
TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 
       14.50         7.59         6.35         7.33         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        2.01         0.99         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 
        0.92         1.02         0.99         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J 
       13.91         6.02        25.94        23.01        17.03         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AH-6544 TCGA-AH-6547 
       49.94         1.94        38.93        61.94         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.69         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 
        6.94         4.70        13.97         7.99        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        5.03         7.36        27.91         6.97        19.99         5.92 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DF 
        3.98         5.00         0.26       119.51        41.33        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 
       51.48        32.58         0.49         2.40         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        2.17         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 
        7.10         6.15         3.55         3.98         2.73         7.79 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 
        2.76         2.04         0.85         2.17         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.69         0.53         1.08         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                         0.39                          0.16 
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                       121.08                        119.51 
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                        8.450                         6.085 
[1] "0.4 - 121.1 (8.4)" "0.2 - 119.5 (6.1)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.8"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) CNV         20   18
  AMP PEAK 25(XQ27.3) WILD-TYPE   54   70
        clus
vv       AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  FEMALE                      20                            54
  MALE                        18                            70
D25V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) CNV         34    1
  AMP PEAK 25(XQ27.3) WILD-TYPE  109   12
                                clus
vv                               AMP PEAK 25(XQ27.3) CNV
  RECTAL ADENOCARCINOMA                               34
  RECTAL MUCINOUS ADENOCARCINOMA                       1
                                clus
vv                               AMP PEAK 25(XQ27.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    109
  RECTAL MUCINOUS ADENOCARCINOMA                            12
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 25(XQ27.3) CNV        2  7 23  6
  AMP PEAK 25(XQ27.3) WILD-TYPE  7 22 86  8
D25V5, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  T1                       2                             7
  T2                       7                            22
  T3                      23                            86
  T4                       6                             8
                               vv
clus                            N0 N1 N2
  AMP PEAK 25(XQ27.3) CNV       18 10  9
  AMP PEAK 25(XQ27.3) WILD-TYPE 65 35 23
D25V6, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  N0                      18                            65
  N1                      10                            35
  N2                       9                            23
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK 25(XQ27.3) CNV       28  6   1  3
  AMP PEAK 25(XQ27.3) WILD-TYPE 95 16   1 10
D25V7, multiclass
     clus
vv    AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  M0                       28                            95
  M1                        6                            16
  M1A                       1                             1
  MX                        3                            10
                               vv
clus                             I II III IV
  AMP PEAK 25(XQ27.3) CNV        9  9  12  6
  AMP PEAK 25(XQ27.3) WILD-TYPE 21 41  38 19
D25V8, multiclass
     clus
vv    AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  I                         9                            21
  II                        9                            41
  III                      12                            38
  IV                        6                            19
D25V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) CNV          0   38
  AMP PEAK 25(XQ27.3) WILD-TYPE    6  118
     clus
vv    AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  NO                        0                             6
  YES                      38                           118
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 25(XQ27.3) CNV       27  0  4  1
  AMP PEAK 25(XQ27.3) WILD-TYPE 94  2  8  2
D25V10, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  R0                      27                            94
  R1                       0                             2
  R2                       4                             8
  RX                       1                             2
D25V11, continuous

Clustering(26) Variable = Del Peak  1(1p36.11)
D26V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.11) CNV       49  6
  DEL PEAK  1(1P36.11) WILD-TYPE 65  5
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            55                             70 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                             6                              5 
$`DEL PEAK  1(1P36.11) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 
       19.53        11.77        10.62        13.55        19.10        10.39 
TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 
       14.50         7.59         1.02         2.01         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3887 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H 
        1.02         0.92         1.02         1.02        13.91        25.94 
TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A026 
       23.01        12.00        70.03        63.98        51.98         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6622 
       38.93        38.01         0.49         0.69        10.19         6.94 
TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
        4.70        11.01         5.03         8.98         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DE 
       27.91        19.99         5.92         5.00       119.51       121.08 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6511 TCGA-EI-7002 
       32.58         0.49         2.40         7.63         3.98         2.76 
TCGA-EI-7004 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6864 TCGA-G5-6572 
        2.04         2.17         1.02         0.69         0.46        47.08 
TCGA-G5-6641 
       20.91 

$`DEL PEAK  1(1P36.11) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 
       15.85        12.72        17.62         8.45         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         0.99        20.94 
TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
        6.02        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 
       12.00        10.98        49.94        61.94        40.96         1.45 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6623 
        0.72         4.60         1.81         6.02         6.02         9.37 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6158 
       13.97        60.00         7.99        10.98         9.99         6.97 
TCGA-DC-6682 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG 
        3.98         0.26        41.33        57.24        24.13        51.48 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 
        0.16         2.17         8.22         0.46         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        7.10         6.15         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 
        7.79         3.39         0.85         0.39         0.66         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 
        1.08         0.76        18.25        47.70 

      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                        121.08                          61.94 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                          7.59                           6.02 
[1] "0.5 - 121.1 (7.6)" "0.2 - 61.9 (6.0)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK  1(1P36.11) CNV" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV         31   40
  DEL PEAK  1(1P36.11) WILD-TYPE   43   48
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                       31                             43
  MALE                         40                             48
D26V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV         60    7
  DEL PEAK  1(1P36.11) WILD-TYPE   83    6
                                clus
vv                               DEL PEAK  1(1P36.11) CNV
  RECTAL ADENOCARCINOMA                                60
  RECTAL MUCINOUS ADENOCARCINOMA                        7
                                clus
vv                               DEL PEAK  1(1P36.11) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      83
  RECTAL MUCINOUS ADENOCARCINOMA                              6
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  1(1P36.11) CNV        2 13 45 10
  DEL PEAK  1(1P36.11) WILD-TYPE  7 16 64  4
D26V5, multiclass
    clus
vv   DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  T1                        2                              7
  T2                       13                             16
  T3                       45                             64
  T4                       10                              4
                                vv
clus                             N0 N1 N2
  DEL PEAK  1(1P36.11) CNV       31 22 17
  DEL PEAK  1(1P36.11) WILD-TYPE 52 23 15
D26V6, multiclass
    clus
vv   DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  N0                       31                             52
  N1                       22                             23
  N2                       17                             15
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK  1(1P36.11) CNV       51 11   2  5
  DEL PEAK  1(1P36.11) WILD-TYPE 72 11   0  8
D26V7, multiclass
     clus
vv    DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  M0                        51                             72
  M1                        11                             11
  M1A                        2                              0
  MX                         5                              8
                                vv
clus                              I II III IV
  DEL PEAK  1(1P36.11) CNV       11 20  23 13
  DEL PEAK  1(1P36.11) WILD-TYPE 19 30  27 12
D26V8, multiclass
     clus
vv    DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  I                         11                             19
  II                        20                             30
  III                       23                             27
  IV                        13                             12
D26V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV          3   68
  DEL PEAK  1(1P36.11) WILD-TYPE    3   88
     clus
vv    DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  NO                         3                              3
  YES                       68                             88
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK  1(1P36.11) CNV       51  1  7  0
  DEL PEAK  1(1P36.11) WILD-TYPE 70  1  5  3
D26V10, multiclass
    clus
vv   DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  R0                       51                             70
  R1                        1                              1
  R2                        7                              5
  RX                        0                              3
D26V11, continuous

Clustering(27) Variable = Del Peak  2(1p33)
D27V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  2(1P33) CNV       36  3
  DEL PEAK  2(1P33) WILD-TYPE 78  8
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                         39                          86 
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                          3                           8 
$`DEL PEAK  2(1P33) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 
       19.53        11.77        13.55        14.50         7.59         1.02 
TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L 
        1.02         1.02         1.02        25.94        23.01        12.00 
TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 
       70.03         1.94        38.93        38.01         0.49         0.69 
TCGA-BM-6198 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 
       10.19         9.37         4.70        13.97        10.98        11.01 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6160 TCGA-DY-A0XA TCGA-DY-A1DE 
        5.03         7.36        27.91        19.99       119.51       121.08 
TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6511 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6702 
        0.49         7.63         3.98         5.23         2.76         2.17 
TCGA-F5-6811 TCGA-F5-6813 TCGA-G5-6572 
        1.02         0.69        47.08 

$`DEL PEAK  2(1P33) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       15.85        10.62        19.10        12.72        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 
        8.45         6.35         7.33         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        0.99         1.02         0.95         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       20.94        13.91         6.02        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
        1.02         1.02        12.00        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 
       49.94        61.94        40.96         1.45         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-5917 TCGA-CL-5918 
        1.81         6.02         6.02         6.94        60.00         7.99 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 
        9.99         8.98         6.97         6.97         5.92         3.98 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG 
        5.00         0.26        41.33        57.24        24.13        51.48 
TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
       32.58         2.40         0.16         2.17         8.22         0.46 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.66         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
        2.73         7.79         2.04         3.39         0.85         0.39 
TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        0.66         0.53         1.08         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6641 
       47.70        20.91 

      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                       0.49                        0.16 
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                     121.08                       63.98 
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                       9.37                        6.02 
[1] "0.5 - 121.1 (9.4)" "0.2 - 64.0 (6.0)" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CI-6624                  TCGA-CL-4957 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-G5-6641 
"DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CI-6624                  TCGA-CL-4957 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-G5-6641 
"DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CI-6624                  TCGA-CL-4957 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-G5-6641 
"DEL PEAK  2(1P33) WILD-TYPE" 
[1] "hr=" "1.5"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) CNV         22   27
  DEL PEAK  2(1P33) WILD-TYPE   52   61
        clus
vv       DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  FEMALE                    22                          52
  MALE                      27                          61
D27V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) CNV         45    1
  DEL PEAK  2(1P33) WILD-TYPE   98   12
                                clus
vv                               DEL PEAK  2(1P33) CNV
  RECTAL ADENOCARCINOMA                             45
  RECTAL MUCINOUS ADENOCARCINOMA                     1
                                clus
vv                               DEL PEAK  2(1P33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   98
  RECTAL MUCINOUS ADENOCARCINOMA                          12
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  2(1P33) CNV        1  7 36  4
  DEL PEAK  2(1P33) WILD-TYPE  8 22 73 10
D27V5, multiclass
    clus
vv   DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  T1                     1                           8
  T2                     7                          22
  T3                    36                          73
  T4                     4                          10
                             vv
clus                          N0 N1 N2
  DEL PEAK  2(1P33) CNV       22 18  8
  DEL PEAK  2(1P33) WILD-TYPE 61 27 24
D27V6, multiclass
    clus
vv   DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  N0                    22                          61
  N1                    18                          27
  N2                     8                          24
                             vv
clus                          M0 M1 M1A MX
  DEL PEAK  2(1P33) CNV       36  8   0  3
  DEL PEAK  2(1P33) WILD-TYPE 87 14   2 10
D27V7, multiclass
     clus
vv    DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  M0                     36                          87
  M1                      8                          14
  M1A                     0                           2
  MX                      3                          10
                             vv
clus                           I II III IV
  DEL PEAK  2(1P33) CNV        6 16  16  8
  DEL PEAK  2(1P33) WILD-TYPE 24 34  34 17
D27V8, multiclass
     clus
vv    DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  I                       6                          24
  II                     16                          34
  III                    16                          34
  IV                      8                          17
D27V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) CNV          3   46
  DEL PEAK  2(1P33) WILD-TYPE    3  110
     clus
vv    DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  NO                      3                           3
  YES                    46                         110
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  2(1P33) CNV       33  1  4  0
  DEL PEAK  2(1P33) WILD-TYPE 88  1  8  3
D27V10, multiclass
    clus
vv   DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  R0                    33                          88
  R1                     1                           1
  R2                     4                           8
  RX                     0                           3
D27V11, continuous

Clustering(28) Variable = Del Peak  3(1p13.2)
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(1P13.2) CNV       37  4
  DEL PEAK  3(1P13.2) WILD-TYPE 77  7
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                           41                            84 
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                            4                             7 
$`DEL PEAK  3(1P13.2) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 
       19.53        11.77        13.55        14.50         7.59         1.02 
TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L 
        1.02         1.02         1.02        25.94        23.01        12.00 
TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-BM-6198 
       70.03         1.94        38.01         0.49         0.69        10.19 
TCGA-CI-6623 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6160 
        9.37        11.01         5.03         7.36        27.91        19.99 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DE TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6509 
      119.51        41.33       121.08         0.49         7.63         8.22 
TCGA-EI-6511 TCGA-EI-6883 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6702 TCGA-F5-6811 
        3.98         3.98         5.23         2.76         2.17         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6572 
        0.66         0.69         0.76        18.25        47.08 

$`DEL PEAK  3(1P13.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       15.85        10.62        19.10        12.72        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 
        8.45         6.35         7.33         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        0.99         1.02         0.95         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       20.94        13.91         6.02        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
        1.02         1.02        12.00        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 
       49.94        38.93        61.94        40.96         1.45         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 
        4.60         1.81         6.02         6.02         6.94         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 
       13.97        60.00         7.99        10.98         9.99         8.98 
TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.97         6.97         5.92         3.98         5.00         0.26 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6507 
       57.24        24.13        51.48        32.58         2.40         0.16 
TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
        2.17         0.46         0.66         6.90         7.10         6.15 
TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        3.55         2.73         7.79         2.04         3.39         0.85 
TCGA-F5-6810 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6641 
        0.39         0.53         1.08         0.46        47.70        20.91 

      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                         0.49                          0.16 
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                       121.08                         63.98 
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                         7.63                          6.02 
[1] "0.5 - 121.1 (7.6)" "0.2 - 64.0 (6.0)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-G5-6641 
"DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-G5-6641 
"DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-G5-6641 
"DEL PEAK  3(1P13.2) WILD-TYPE" 
[1] "hr=" "1"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) CNV         22   29
  DEL PEAK  3(1P13.2) WILD-TYPE   52   59
        clus
vv       DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  FEMALE                      22                            52
  MALE                        29                            59
D28V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) CNV         46    2
  DEL PEAK  3(1P13.2) WILD-TYPE   97   11
                                clus
vv                               DEL PEAK  3(1P13.2) CNV
  RECTAL ADENOCARCINOMA                               46
  RECTAL MUCINOUS ADENOCARCINOMA                       2
                                clus
vv                               DEL PEAK  3(1P13.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     97
  RECTAL MUCINOUS ADENOCARCINOMA                            11
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  3(1P13.2) CNV        1  5 39  5
  DEL PEAK  3(1P13.2) WILD-TYPE  8 24 70  9
D28V5, multiclass
    clus
vv   DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  T1                       1                             8
  T2                       5                            24
  T3                      39                            70
  T4                       5                             9
                               vv
clus                            N0 N1 N2
  DEL PEAK  3(1P13.2) CNV       24 15 11
  DEL PEAK  3(1P13.2) WILD-TYPE 59 30 21
D28V6, multiclass
    clus
vv   DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  N0                      24                            59
  N1                      15                            30
  N2                      11                            21
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  3(1P13.2) CNV       39  8   0  2
  DEL PEAK  3(1P13.2) WILD-TYPE 84 14   2 11
D28V7, multiclass
     clus
vv    DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  M0                       39                            84
  M1                        8                            14
  M1A                       0                             2
  MX                        2                            11
                               vv
clus                             I II III IV
  DEL PEAK  3(1P13.2) CNV        5 20  15  8
  DEL PEAK  3(1P13.2) WILD-TYPE 25 30  35 17
D28V8, multiclass
     clus
vv    DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  I                         5                            25
  II                       20                            30
  III                      15                            35
  IV                        8                            17
D28V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) CNV          3   48
  DEL PEAK  3(1P13.2) WILD-TYPE    3  108
     clus
vv    DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  NO                        3                             3
  YES                      48                           108
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  3(1P13.2) CNV       37  1  4  0
  DEL PEAK  3(1P13.2) WILD-TYPE 84  1  8  3
D28V10, multiclass
    clus
vv   DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  R0                      37                            84
  R1                       1                             1
  R2                       4                             8
  RX                       0                             3
D28V11, continuous

Clustering(29) Variable = Del Peak  4(2p12)
D29V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  4(2P12) CNV        11   0
  DEL PEAK  4(2P12) WILD-TYPE 103  11
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                         11                         114 
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                          0                          11 
$`DEL PEAK  4(2P12) CNV`
TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A00H TCGA-AG-A02X 
        7.59         1.02         1.02         1.02        25.94        40.96 
TCGA-DC-6156 TCGA-DC-6682 TCGA-EF-5831 TCGA-EI-6508 TCGA-F5-6571 
        6.97         3.98         2.40         2.17         0.85 

$`DEL PEAK  4(2P12) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6655 
       12.72        17.62        10.39        14.50         8.45         6.35 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        7.33         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.95         1.02         0.99         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.01         0.49         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        1.81        10.19         6.02         6.02         6.94         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        4.70        13.97        60.00         7.99        10.98        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 
        9.99         5.03         8.98         7.36        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         5.00         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       57.24       121.08        24.13        51.48        32.58         0.49 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        7.63         0.16         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        6.90         7.10         6.15         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 
        5.23         7.79         2.76         2.04         3.39         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        47.70        47.08        20.91 

      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                       0.85                        0.16 
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                      40.96                      121.08 
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                       2.40                        6.92 
[1] "0.8 - 41.0 (2.4)"  "0.2 - 121.1 (6.9)"
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" 
[1] "hr="     "2.7e+07"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) CNV          7   10
  DEL PEAK  4(2P12) WILD-TYPE   67   78
        clus
vv       DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  FEMALE                     7                          67
  MALE                      10                          78
D29V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) CNV         15    1
  DEL PEAK  4(2P12) WILD-TYPE  128   12
                                clus
vv                               DEL PEAK  4(2P12) CNV
  RECTAL ADENOCARCINOMA                             15
  RECTAL MUCINOUS ADENOCARCINOMA                     1
                                clus
vv                               DEL PEAK  4(2P12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                  128
  RECTAL MUCINOUS ADENOCARCINOMA                          12
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  4(2P12) CNV        0  1 15  1
  DEL PEAK  4(2P12) WILD-TYPE  9 28 94 13
D29V5, multiclass
    clus
vv   DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  T1                     0                           9
  T2                     1                          28
  T3                    15                          94
  T4                     1                          13
                             vv
clus                          N0 N1 N2
  DEL PEAK  4(2P12) CNV       10  3  4
  DEL PEAK  4(2P12) WILD-TYPE 73 42 28
D29V6, multiclass
    clus
vv   DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  N0                    10                          73
  N1                     3                          42
  N2                     4                          28
                             vv
clus                           M0  M1 M1A  MX
  DEL PEAK  4(2P12) CNV        14   1   1   1
  DEL PEAK  4(2P12) WILD-TYPE 109  21   1  12
D29V7, multiclass
     clus
vv    DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  M0                     14                         109
  M1                      1                          21
  M1A                     1                           1
  MX                      1                          12
                             vv
clus                           I II III IV
  DEL PEAK  4(2P12) CNV        1  9   5  2
  DEL PEAK  4(2P12) WILD-TYPE 29 41  45 23
D29V8, multiclass
     clus
vv    DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  I                       1                          29
  II                      9                          41
  III                     5                          45
  IV                      2                          23
D29V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) CNV          1   16
  DEL PEAK  4(2P12) WILD-TYPE    5  140
     clus
vv    DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  NO                      1                           5
  YES                    16                         140
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK  4(2P12) CNV        14   0   1   0
  DEL PEAK  4(2P12) WILD-TYPE 107   2  11   3
D29V10, multiclass
    clus
vv   DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  R0                    14                         107
  R1                     0                           2
  R2                     1                          11
  RX                     0                           3
D29V11, continuous

Clustering(30) Variable = Del Peak  5(3p14.2)
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(3P14.2) CNV       20  2
  DEL PEAK  5(3P14.2) WILD-TYPE 94  9
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           22                           103 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                            2                             9 
$`DEL PEAK  5(3P14.2) CNV`
TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-3581 TCGA-AG-3583 
       10.62        19.10        12.72        14.50         1.02         2.01 
TCGA-AG-3731 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A02G TCGA-AH-6544 
        1.02         1.02         1.02         6.02        38.93         0.49 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-DC-5337 TCGA-DC-6158 TCGA-DC-6682 
       10.19         6.02         9.37         9.99         6.97         3.98 
TCGA-DT-5265 TCGA-EI-6508 TCGA-F5-6810 TCGA-G5-6233 
        0.26         2.17         0.39        18.25 

$`DEL PEAK  5(3P14.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3911 TCGA-AF-3913 
       19.53        15.85        11.77        13.55        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3587 
        8.45         7.59         6.35         7.33         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        0.99         1.02         0.95         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4022 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       20.94        13.91        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.02         1.02         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N 
       63.98        10.98        51.98        49.94         1.94        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       40.96        38.01         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        1.81         6.02         6.94         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
        7.99        10.98        11.01         5.03         8.98         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA 
        6.97        27.91        19.99         5.92         5.00       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
       41.33        57.24       121.08        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 
        0.49         2.40         7.63         0.16         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
        3.98         0.66         6.90         7.10         6.15         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        3.98         2.73         5.23         7.79         2.76         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        3.39         0.85         2.17         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76         0.46        47.70        47.08 
TCGA-G5-6641 
       20.91 

      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                         0.26                          0.16 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                        38.93                        121.08 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                         6.02                          6.90 
[1] "0.3 - 38.9 (6.0)"  "0.2 - 121.1 (6.9)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK  5(3P14.2) CNV"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK  5(3P14.2) CNV"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK  5(3P14.2) CNV"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" 
[1] "hr=" "4.8"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) CNV          7   22
  DEL PEAK  5(3P14.2) WILD-TYPE   67   66
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  FEMALE                       7                            67
  MALE                        22                            66
D30V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) CNV         23    3
  DEL PEAK  5(3P14.2) WILD-TYPE  120   10
                                clus
vv                               DEL PEAK  5(3P14.2) CNV
  RECTAL ADENOCARCINOMA                               23
  RECTAL MUCINOUS ADENOCARCINOMA                       3
                                clus
vv                               DEL PEAK  5(3P14.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    120
  RECTAL MUCINOUS ADENOCARCINOMA                            10
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  5(3P14.2) CNV        4  6 17  2
  DEL PEAK  5(3P14.2) WILD-TYPE  5 23 92 12
D30V5, multiclass
    clus
vv   DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  T1                       4                             5
  T2                       6                            23
  T3                      17                            92
  T4                       2                            12
                               vv
clus                            N0 N1 N2
  DEL PEAK  5(3P14.2) CNV       16  8  5
  DEL PEAK  5(3P14.2) WILD-TYPE 67 37 27
D30V6, multiclass
    clus
vv   DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  N0                      16                            67
  N1                       8                            37
  N2                       5                            27
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK  5(3P14.2) CNV        19   7   0   2
  DEL PEAK  5(3P14.2) WILD-TYPE 104  15   2  11
D30V7, multiclass
     clus
vv    DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  M0                       19                           104
  M1                        7                            15
  M1A                       0                             2
  MX                        2                            11
                               vv
clus                             I II III IV
  DEL PEAK  5(3P14.2) CNV        9  8   4  7
  DEL PEAK  5(3P14.2) WILD-TYPE 21 42  46 18
D30V8, multiclass
     clus
vv    DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  I                         9                            21
  II                        8                            42
  III                       4                            46
  IV                        7                            18
D30V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) CNV          2   27
  DEL PEAK  5(3P14.2) WILD-TYPE    4  129
     clus
vv    DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  NO                        2                             4
  YES                      27                           129
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  5(3P14.2) CNV        18   0   5   1
  DEL PEAK  5(3P14.2) WILD-TYPE 103   2   7   2
D30V10, multiclass
    clus
vv   DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  R0                      18                           103
  R1                       0                             2
  R2                       5                             7
  RX                       1                             2
D30V11, continuous

Clustering(31) Variable = Del Peak  6(3q26.31)
D31V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  6(3Q26.31) CNV        12   3
  DEL PEAK  6(3Q26.31) WILD-TYPE 102   8
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                            15                            110 
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                             3                              8 
$`DEL PEAK  6(3Q26.31) CNV`
TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-3583 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 
       12.72        14.50         2.01         0.99         1.02         1.02 
TCGA-AG-A026 TCGA-AG-A02G TCGA-BM-6198 TCGA-CI-6619 TCGA-DC-6682 TCGA-DT-5265 
        1.94        38.93        10.19         6.02         3.98         0.26 
TCGA-EI-6507 TCGA-EI-7002 TCGA-G5-6233 
        0.16         2.76        18.25 

$`DEL PEAK  6(3Q26.31) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        10.39         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         1.02         0.99         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.99         0.99         0.92         1.02         0.99 
TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         0.99        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98        49.94        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 
        1.45         0.69         0.72         4.60         1.81         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
       10.98        11.01         9.99         5.03         8.98         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 
        6.97        27.91         6.97        19.99         5.92         5.00 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      119.51        41.33        57.24       121.08        24.13        51.48 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
       32.58         0.49         2.40         7.63         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
        0.46         3.98         0.66         6.90         7.10         6.15 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 
        3.55         3.98         2.73         5.23         7.79         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.69         0.53         1.08         0.76         0.46        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                          0.16                           0.39 
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                         38.93                         121.08 
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                         2.760                          6.955 
[1] "0.2 - 38.9 (2.8)"  "0.4 - 121.1 (7.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" 
[1] "hr=" "13" 
D31V2, continuous
D31V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) CNV          2   15
  DEL PEAK  6(3Q26.31) WILD-TYPE   72   73
        clus
vv       DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  FEMALE                        2                             72
  MALE                         15                             73
D31V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) CNV         12    4
  DEL PEAK  6(3Q26.31) WILD-TYPE  131    9
                                clus
vv                               DEL PEAK  6(3Q26.31) CNV
  RECTAL ADENOCARCINOMA                                12
  RECTAL MUCINOUS ADENOCARCINOMA                        4
                                clus
vv                               DEL PEAK  6(3Q26.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     131
  RECTAL MUCINOUS ADENOCARCINOMA                              9
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  6(3Q26.31) CNV        0  1 13  3
  DEL PEAK  6(3Q26.31) WILD-TYPE  9 28 96 11
D31V5, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  T1                        0                              9
  T2                        1                             28
  T3                       13                             96
  T4                        3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK  6(3Q26.31) CNV        8  4  5
  DEL PEAK  6(3Q26.31) WILD-TYPE 75 41 27
D31V6, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  N0                        8                             75
  N1                        4                             41
  N2                        5                             27
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK  6(3Q26.31) CNV        10   5   0   1
  DEL PEAK  6(3Q26.31) WILD-TYPE 113  17   2  12
D31V7, multiclass
     clus
vv    DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  M0                        10                            113
  M1                         5                             17
  M1A                        0                              2
  MX                         1                             12
                                vv
clus                              I II III IV
  DEL PEAK  6(3Q26.31) CNV        0  9   2  6
  DEL PEAK  6(3Q26.31) WILD-TYPE 30 41  48 19
D31V8, multiclass
     clus
vv    DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  I                          0                             30
  II                         9                             41
  III                        2                             48
  IV                         6                             19
D31V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) CNV          2   15
  DEL PEAK  6(3Q26.31) WILD-TYPE    4  141
     clus
vv    DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  NO                         2                              4
  YES                       15                            141
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK  6(3Q26.31) CNV        11   1   3   1
  DEL PEAK  6(3Q26.31) WILD-TYPE 110   1   9   2
D31V10, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  R0                       11                            110
  R1                        1                              1
  R2                        3                              9
  RX                        1                              2
D31V11, continuous

Clustering(32) Variable = Del Peak  7(4p13)
D32V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  7(4P13) CNV       40  2
  DEL PEAK  7(4P13) WILD-TYPE 74  9
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                         42                          83 
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                          2                           9 
$`DEL PEAK  7(4P13) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       19.53        11.77        10.62        12.72        17.62        14.50 
TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3731 TCGA-AG-3893 TCGA-AG-3999 
        7.59         7.33         1.02         1.02         0.99         1.02 
TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W 
        1.02        13.91        25.94        23.01        12.00        70.03 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
       38.93        40.96         0.69        10.19         6.02         6.02 
TCGA-DC-5869 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DY-A0XA 
        5.03         6.97        27.91         6.97        19.99       119.51 
TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 
      121.08        32.58         2.40         3.98         6.90         6.15 
TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6813 TCGA-G5-6641 
        2.76         0.85         2.17         0.39         0.69        20.91 

$`DEL PEAK  7(4P13) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 
       15.85        13.55        19.10        10.39         8.45         6.35 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4007 
        0.99         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 
        1.02         0.99        20.94         6.02        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02         1.02        12.00        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 
       51.98        49.94         1.94        61.94        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 TCGA-CI-6623 
        1.45         0.72         4.60         1.81         6.94         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        4.70        13.97        60.00         7.99        10.98        11.01 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
        9.99         8.98         7.36         5.92         3.98         5.00 
TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
        0.26        41.33        57.24        24.13        51.48         0.49 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 
        7.63         0.16         2.17         8.22         0.46         0.66 
TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
        7.10         3.55         3.98         2.73         5.23         7.79 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 
        2.04         3.39         1.02         0.66         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.76         0.46        18.25        47.70        47.08 

      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                       0.39                        0.16 
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                     121.08                       63.98 
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                       7.46                        5.00 
[1] "0.4 - 121.1 (7.5)" "0.2 - 64.0 (5.0)" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6619                  TCGA-CI-6620 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6158                  TCGA-DC-6160 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6702                  TCGA-F5-6810 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6641 
      "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6619                  TCGA-CI-6620 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6158                  TCGA-DC-6160 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6702                  TCGA-F5-6810 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6641 
      "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-4007                  TCGA-AG-4008 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A011                  TCGA-AG-A014 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AH-6644                  TCGA-AH-6897 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6619                  TCGA-CI-6620 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6158                  TCGA-DC-6160 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6702                  TCGA-F5-6810 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6641 
      "DEL PEAK  7(4P13) CNV" 
[1] "hr=" "2.6"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) CNV         21   37
  DEL PEAK  7(4P13) WILD-TYPE   53   51
        clus
vv       DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  FEMALE                    21                          53
  MALE                      37                          51
D32V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) CNV         53    3
  DEL PEAK  7(4P13) WILD-TYPE   90   10
                                clus
vv                               DEL PEAK  7(4P13) CNV
  RECTAL ADENOCARCINOMA                             53
  RECTAL MUCINOUS ADENOCARCINOMA                     3
                                clus
vv                               DEL PEAK  7(4P13) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   90
  RECTAL MUCINOUS ADENOCARCINOMA                          10
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  7(4P13) CNV        2 10 42  4
  DEL PEAK  7(4P13) WILD-TYPE  7 19 67 10
D32V5, multiclass
    clus
vv   DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  T1                     2                           7
  T2                    10                          19
  T3                    42                          67
  T4                     4                          10
                             vv
clus                          N0 N1 N2
  DEL PEAK  7(4P13) CNV       26 20 12
  DEL PEAK  7(4P13) WILD-TYPE 57 25 20
D32V6, multiclass
    clus
vv   DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  N0                    26                          57
  N1                    20                          25
  N2                    12                          20
                             vv
clus                          M0 M1 M1A MX
  DEL PEAK  7(4P13) CNV       43  8   1  5
  DEL PEAK  7(4P13) WILD-TYPE 80 14   1  8
D32V7, multiclass
     clus
vv    DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  M0                     43                          80
  M1                      8                          14
  M1A                     1                           1
  MX                      5                           8
                             vv
clus                           I II III IV
  DEL PEAK  7(4P13) CNV        9 17  20 11
  DEL PEAK  7(4P13) WILD-TYPE 21 33  30 14
D32V8, multiclass
     clus
vv    DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  I                       9                          21
  II                     17                          33
  III                    20                          30
  IV                     11                          14
D32V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) CNV          6   52
  DEL PEAK  7(4P13) WILD-TYPE    0  104
     clus
vv    DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  NO                      6                           0
  YES                    52                         104
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  7(4P13) CNV       46  0  3  0
  DEL PEAK  7(4P13) WILD-TYPE 75  2  9  3
D32V10, multiclass
    clus
vv   DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  R0                    46                          75
  R1                     0                           2
  R2                     3                           9
  RX                     0                           3
D32V11, continuous

Clustering(33) Variable = Del Peak  8(4q22.1)
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(4Q22.1) CNV       52  2
  DEL PEAK  8(4Q22.1) WILD-TYPE 62  9
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                           54                            71 
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                            2                             9 
$`DEL PEAK  8(4Q22.1) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3999 TCGA-AG-4001 
       17.62        14.50         7.59         1.02         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02X TCGA-AH-6544 
       12.00        70.03        63.98         1.94        40.96         0.49 
TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6624 TCGA-DC-4749 
        0.69        10.19         6.02         6.02         4.70        11.01 
TCGA-DC-5869 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 
        5.03         6.97        27.91         6.97        19.99         3.98 
TCGA-DY-A0XA TCGA-DY-A1DE TCGA-EF-5831 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6511 
      119.51       121.08         2.40         2.17         8.22         3.98 
TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6702 
        6.90         6.15         2.76         2.04         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-G5-6233 TCGA-G5-6641 
        0.39         1.02         0.66         0.69        18.25        20.91 

$`DEL PEAK  8(4Q22.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 
       15.85        10.39         8.45         6.35         7.33         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        2.01         1.02         0.99         1.02         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        0.99        20.94        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G 
        1.02        12.00        10.98        51.98        49.94        38.93 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       61.94        38.01         1.45         0.72         4.60         1.81 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        6.94         9.37        13.97        60.00         7.99        10.98 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 
        9.99         8.98         7.36         5.92         5.00         0.26 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       41.33        57.24        24.13        51.48        32.58         0.49 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 
        7.63         0.16         0.46         0.66         7.10         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6814 
        3.98         2.73         5.23         7.79         3.39         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.76         0.46        47.70        47.08 

      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                         0.39                          0.16 
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                       121.08                         61.94 
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                        6.935                         5.920 
[1] "0.4 - 121.1 (6.9)" "0.2 - 61.9 (5.9)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK  8(4Q22.1) CNV" 
[1] "hr=" "3.3"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) CNV         28   44
  DEL PEAK  8(4Q22.1) WILD-TYPE   46   44
        clus
vv       DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  FEMALE                      28                            46
  MALE                        44                            44
D33V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) CNV         64    4
  DEL PEAK  8(4Q22.1) WILD-TYPE   79    9
                                clus
vv                               DEL PEAK  8(4Q22.1) CNV
  RECTAL ADENOCARCINOMA                               64
  RECTAL MUCINOUS ADENOCARCINOMA                       4
                                clus
vv                               DEL PEAK  8(4Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     79
  RECTAL MUCINOUS ADENOCARCINOMA                             9
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  8(4Q22.1) CNV        2 10 53  7
  DEL PEAK  8(4Q22.1) WILD-TYPE  7 19 56  7
D33V5, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  T1                       2                             7
  T2                      10                            19
  T3                      53                            56
  T4                       7                             7
                               vv
clus                            N0 N1 N2
  DEL PEAK  8(4Q22.1) CNV       35 21 16
  DEL PEAK  8(4Q22.1) WILD-TYPE 48 24 16
D33V6, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  N0                      35                            48
  N1                      21                            24
  N2                      16                            16
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  8(4Q22.1) CNV       56  8   1  6
  DEL PEAK  8(4Q22.1) WILD-TYPE 67 14   1  7
D33V7, multiclass
     clus
vv    DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  M0                       56                            67
  M1                        8                            14
  M1A                       1                             1
  MX                        6                             7
                               vv
clus                             I II III IV
  DEL PEAK  8(4Q22.1) CNV       11 25  24 10
  DEL PEAK  8(4Q22.1) WILD-TYPE 19 25  26 15
D33V8, multiclass
     clus
vv    DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  I                        11                            19
  II                       25                            25
  III                      24                            26
  IV                       10                            15
D33V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) CNV          5   67
  DEL PEAK  8(4Q22.1) WILD-TYPE    1   89
     clus
vv    DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  NO                        5                             1
  YES                      67                            89
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  8(4Q22.1) CNV       56  1  3  0
  DEL PEAK  8(4Q22.1) WILD-TYPE 65  1  9  3
D33V10, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  R0                      56                            65
  R1                       1                             1
  R2                       3                             9
  RX                       0                             3
D33V11, continuous

Clustering(34) Variable = Del Peak  9(4q35.1)
D34V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(4Q35.1) CNV       49  3
  DEL PEAK  9(4Q35.1) WILD-TYPE 65  8
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                           52                            73 
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                            3                             8 
$`DEL PEAK  9(4Q35.1) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3587 
       17.62        10.39        14.50         7.59         1.02         1.02 
TCGA-AG-3742 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y 
        0.99         1.02         1.02        13.91        25.94        23.01 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 
       12.00        70.03        63.98        40.96         0.49         0.69 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-5869 
       10.19         6.02         6.02         4.70        11.01         5.03 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DY-A0XA TCGA-DY-A1DE 
        6.97        27.91         6.97        19.99       119.51       121.08 
TCGA-DY-A1DF TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 
       24.13         2.40         8.22         3.98         6.90         6.15 
TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        2.76         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6814 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6641 
        0.53         0.46        18.25        20.91 

$`DEL PEAK  9(4Q35.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3583 
       15.85         8.45         6.35         7.33         1.02         2.01 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 
        0.99         1.02         0.95         1.02         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       20.94         6.02        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        10.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 
       38.93        61.94        38.01         1.45         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        1.81         6.94         9.37        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6681 TCGA-DC-6682 
       10.98         9.99         8.98         7.36         5.92         3.98 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 
        5.00         0.26        41.33        57.24        51.48        32.58 
TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 
        0.49         7.63         0.16         2.17         0.46         0.66 
TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
        7.10         3.55         3.98         2.73         5.23         7.79 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6235 
        2.04         3.39         0.69         1.08         0.76        47.70 
TCGA-G5-6572 
       47.08 

      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                         0.39                          0.16 
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                       121.08                         61.94 
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                        7.905                         5.000 
[1] "0.4 - 121.1 (7.9)" "0.2 - 61.9 (5.0)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK  9(4Q35.1) CNV" 
[1] "hr=" "2"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) CNV         30   42
  DEL PEAK  9(4Q35.1) WILD-TYPE   44   46
        clus
vv       DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  FEMALE                      30                            44
  MALE                        42                            46
D34V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) CNV         65    3
  DEL PEAK  9(4Q35.1) WILD-TYPE   78   10
                                clus
vv                               DEL PEAK  9(4Q35.1) CNV
  RECTAL ADENOCARCINOMA                               65
  RECTAL MUCINOUS ADENOCARCINOMA                       3
                                clus
vv                               DEL PEAK  9(4Q35.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     78
  RECTAL MUCINOUS ADENOCARCINOMA                            10
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  9(4Q35.1) CNV        3 12 53  4
  DEL PEAK  9(4Q35.1) WILD-TYPE  6 17 56 10
D34V5, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  T1                       3                             6
  T2                      12                            17
  T3                      53                            56
  T4                       4                            10
                               vv
clus                            N0 N1 N2
  DEL PEAK  9(4Q35.1) CNV       35 20 17
  DEL PEAK  9(4Q35.1) WILD-TYPE 48 25 15
D34V6, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  N0                      35                            48
  N1                      20                            25
  N2                      17                            15
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  9(4Q35.1) CNV       55  9   1  6
  DEL PEAK  9(4Q35.1) WILD-TYPE 68 13   1  7
D34V7, multiclass
     clus
vv    DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  M0                       55                            68
  M1                        9                            13
  M1A                       1                             1
  MX                        6                             7
                               vv
clus                             I II III IV
  DEL PEAK  9(4Q35.1) CNV       13 23  24  9
  DEL PEAK  9(4Q35.1) WILD-TYPE 17 27  26 16
D34V8, multiclass
     clus
vv    DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  I                        13                            17
  II                       23                            27
  III                      24                            26
  IV                        9                            16
D34V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) CNV          5   67
  DEL PEAK  9(4Q35.1) WILD-TYPE    1   89
     clus
vv    DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  NO                        5                             1
  YES                      67                            89
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  9(4Q35.1) CNV       56  0  3  0
  DEL PEAK  9(4Q35.1) WILD-TYPE 65  2  9  3
D34V10, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  R0                      56                            65
  R1                       0                             2
  R2                       3                             9
  RX                       0                             3
D34V11, continuous

Clustering(35) Variable = Del Peak 10(5q11.2)
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(5Q11.2) CNV       33  5
  DEL PEAK 10(5Q11.2) WILD-TYPE 81  6
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                           38                            87 
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                            5                             6 
$`DEL PEAK 10(5Q11.2) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 
       19.53        11.77        10.62        17.62        10.39         7.59 
TCGA-AF-6672 TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A00Y 
        7.33         1.02         1.02         1.02         1.02        23.01 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-BM-6198 
       70.03        63.98         1.94        38.93        40.96        10.19 
TCGA-CI-6620 TCGA-CL-5918 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
        6.02         7.99         5.03         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EI-6506 
        6.97       119.51        57.24       121.08        51.48         7.63 
TCGA-EI-6881 TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 
        6.15         5.23         2.76         2.04         3.39         2.17 
TCGA-F5-6811 TCGA-G5-6641 
        1.02        20.91 

$`DEL PEAK 10(5Q11.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-5654 
       15.85        13.55        19.10        12.72        14.50         8.45 
TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
        6.35         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.95         0.99         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        0.99         0.99         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
        1.02        12.00        12.00        10.98        51.98        49.94 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 
       61.94        38.01         0.49         1.45         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
        4.60         1.81         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6154 
       13.97        60.00        10.98        11.01         9.99         8.98 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC 
       19.99         5.92         3.98         5.00         0.26        41.33 
TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 
       24.13        32.58         0.49         2.40         0.16         2.17 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
        8.22         0.46         3.98         0.66         6.90         7.10 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-F5-6571 TCGA-F5-6810 
        3.55         3.98         2.73         7.79         0.85         0.39 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
       18.25        47.70        47.08 

      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                         1.02                          0.16 
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                       121.08                         61.94 
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                         7.61                          4.70 
[1] "1.0 - 121.1 (7.6)" "0.2 - 61.9 (4.7)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK 10(5Q11.2) CNV" 
[1] "hr=" "1.3"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) CNV         26   23
  DEL PEAK 10(5Q11.2) WILD-TYPE   48   65
        clus
vv       DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  FEMALE                      26                            48
  MALE                        23                            65
D35V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) CNV         46    2
  DEL PEAK 10(5Q11.2) WILD-TYPE   97   11
                                clus
vv                               DEL PEAK 10(5Q11.2) CNV
  RECTAL ADENOCARCINOMA                               46
  RECTAL MUCINOUS ADENOCARCINOMA                       2
                                clus
vv                               DEL PEAK 10(5Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     97
  RECTAL MUCINOUS ADENOCARCINOMA                            11
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 10(5Q11.2) CNV        2  8 35  4
  DEL PEAK 10(5Q11.2) WILD-TYPE  7 21 74 10
D35V5, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  T1                       2                             7
  T2                       8                            21
  T3                      35                            74
  T4                       4                            10
                               vv
clus                            N0 N1 N2
  DEL PEAK 10(5Q11.2) CNV       24 15 10
  DEL PEAK 10(5Q11.2) WILD-TYPE 59 30 22
D35V6, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  N0                      24                            59
  N1                      15                            30
  N2                      10                            22
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 10(5Q11.2) CNV       33  9   1  5
  DEL PEAK 10(5Q11.2) WILD-TYPE 90 13   1  8
D35V7, multiclass
     clus
vv    DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  M0                       33                            90
  M1                        9                            13
  M1A                       1                             1
  MX                        5                             8
                               vv
clus                             I II III IV
  DEL PEAK 10(5Q11.2) CNV        7 17  12 11
  DEL PEAK 10(5Q11.2) WILD-TYPE 23 33  38 14
D35V8, multiclass
     clus
vv    DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  I                         7                            23
  II                       17                            33
  III                      12                            38
  IV                       11                            14
D35V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) CNV          5   44
  DEL PEAK 10(5Q11.2) WILD-TYPE    1  112
     clus
vv    DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  NO                        5                             1
  YES                      44                           112
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 10(5Q11.2) CNV       34  1  3  1
  DEL PEAK 10(5Q11.2) WILD-TYPE 87  1  9  2
D35V10, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  R0                      34                            87
  R1                       1                             1
  R2                       3                             9
  RX                       1                             2
D35V11, continuous

Clustering(36) Variable = Del Peak 11(5q22.2)
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(5Q22.2) CNV       34  6
  DEL PEAK 11(5Q22.2) WILD-TYPE 80  5
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                           40                            85 
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                            6                             5 
$`DEL PEAK 11(5Q22.2) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 
       19.53        11.77        10.62        17.62        10.39         7.59 
TCGA-AF-6672 TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A00C 
        7.33         1.02         1.02         1.02         1.02         6.02 
TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G 
       23.01        12.00        70.03        63.98         1.94        38.93 
TCGA-AG-A02X TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-CL-5918 TCGA-DC-5869 
       40.96         1.81        10.19         6.02         7.99         5.03 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DY-A0XA 
        7.36         6.97        27.91         6.97         3.98       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 
       41.33        57.24        51.48         7.63         0.16         0.46 
TCGA-EI-6513 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6864 
        6.90         6.15         2.17         0.46 

$`DEL PEAK 11(5Q22.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-5654 
       15.85        13.55        19.10        12.72        14.50         8.45 
TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
        6.35         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.95         0.99         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        0.99         0.99         1.02         0.99        20.94        13.91 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       25.94        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A032 
       12.00        10.98        51.98        49.94        61.94        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-CI-6619 
        0.49         1.45         0.69         0.72         4.60         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4745 
        6.94         9.37         4.70        13.97        60.00        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 
       11.01         9.99         8.98        19.99         5.92         5.00 
TCGA-DT-5265 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
        0.26       121.08        24.13        32.58         0.49         2.40 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 
        2.17         8.22         3.98         0.66         7.10         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        3.98         2.73         5.23         7.79         2.76         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        3.39         0.85         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76        18.25        47.70        47.08 
TCGA-G5-6641 
       20.91 

      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                         0.16                          0.26 
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                       119.51                        121.08 
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                        7.475                         4.700 
[1] "0.2 - 119.5 (7.5)" "0.3 - 121.1 (4.7)"
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6507                    TCGA-EI-6508 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) CNV         28   27
  DEL PEAK 11(5Q22.2) WILD-TYPE   46   61
        clus
vv       DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  FEMALE                      28                            46
  MALE                        27                            61
D36V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) CNV         52    2
  DEL PEAK 11(5Q22.2) WILD-TYPE   91   11
                                clus
vv                               DEL PEAK 11(5Q22.2) CNV
  RECTAL ADENOCARCINOMA                               52
  RECTAL MUCINOUS ADENOCARCINOMA                       2
                                clus
vv                               DEL PEAK 11(5Q22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     91
  RECTAL MUCINOUS ADENOCARCINOMA                            11
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 11(5Q22.2) CNV        1  9 40  5
  DEL PEAK 11(5Q22.2) WILD-TYPE  8 20 69  9
D36V5, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  T1                       1                             8
  T2                       9                            20
  T3                      40                            69
  T4                       5                             9
                               vv
clus                            N0 N1 N2
  DEL PEAK 11(5Q22.2) CNV       26 19 10
  DEL PEAK 11(5Q22.2) WILD-TYPE 57 26 22
D36V6, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  N0                      26                            57
  N1                      19                            26
  N2                      10                            22
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 11(5Q22.2) CNV       41  7   1  5
  DEL PEAK 11(5Q22.2) WILD-TYPE 82 15   1  8
D36V7, multiclass
     clus
vv    DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  M0                       41                            82
  M1                        7                            15
  M1A                       1                             1
  MX                        5                             8
                               vv
clus                             I II III IV
  DEL PEAK 11(5Q22.2) CNV        7 18  19  9
  DEL PEAK 11(5Q22.2) WILD-TYPE 23 32  31 16
D36V8, multiclass
     clus
vv    DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  I                         7                            23
  II                       18                            32
  III                      19                            31
  IV                        9                            16
D36V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) CNV          5   50
  DEL PEAK 11(5Q22.2) WILD-TYPE    1  106
     clus
vv    DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  NO                        5                             1
  YES                      50                           106
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 11(5Q22.2) CNV       40  1  4  1
  DEL PEAK 11(5Q22.2) WILD-TYPE 81  1  8  2
D36V10, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  R0                      40                            81
  R1                       1                             1
  R2                       4                             8
  RX                       1                             2
D36V11, continuous

Clustering(37) Variable = Del Peak 12(6p25.3)
D37V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 12(6P25.3) CNV        14   1
  DEL PEAK 12(6P25.3) WILD-TYPE 100  10
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                           15                           110 
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                            1                            10 
$`DEL PEAK 12(6P25.3) CNV`
TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-4001 
       11.77        13.55        19.10        12.72        14.50         1.02 
TCGA-AG-A008 TCGA-AG-A011 TCGA-BM-6198 TCGA-DC-4745 TCGA-DC-6682 TCGA-DT-5265 
       13.91        17.03        10.19        10.98         3.98         0.26 
TCGA-DY-A1DF TCGA-EI-6511 TCGA-EI-6883 
       24.13         3.98         3.98 

$`DEL PEAK 12(6P25.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 
       19.53        15.85        10.62        17.62        10.39         8.45 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
        7.59         6.35         7.33         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        1.02         0.99         1.02         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         0.99        20.94         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       23.01        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
        1.94        38.93        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 
        1.45         0.69         0.72         4.60         1.81         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
        7.99        11.01         9.99         5.03         8.98         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 
        6.97        27.91         6.97        19.99         5.92         5.00 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 
      119.51        41.33        57.24       121.08        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
        0.49         2.40         7.63         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
        0.46         0.66         6.90         7.10         6.15         3.55 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        2.73         5.23         7.79         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.53         1.08         0.76         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                         0.26                          0.16 
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                        24.13                        121.08 
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                        11.77                          6.02 
[1] "0.3 - 24.1 (11.8)" "0.2 - 121.1 (6.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 12(6P25.3) CNV"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 12(6P25.3) CNV"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 12(6P25.3) CNV"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" 
[1] "hr=" "2.6"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) CNV         10   14
  DEL PEAK 12(6P25.3) WILD-TYPE   64   74
        clus
vv       DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  FEMALE                      10                            64
  MALE                        14                            74
D37V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) CNV         18    3
  DEL PEAK 12(6P25.3) WILD-TYPE  125   10
                                clus
vv                               DEL PEAK 12(6P25.3) CNV
  RECTAL ADENOCARCINOMA                               18
  RECTAL MUCINOUS ADENOCARCINOMA                       3
                                clus
vv                               DEL PEAK 12(6P25.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    125
  RECTAL MUCINOUS ADENOCARCINOMA                            10
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 12(6P25.3) CNV        0  2 21  1
  DEL PEAK 12(6P25.3) WILD-TYPE  9 27 88 13
D37V5, multiclass
    clus
vv   DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  T1                       0                             9
  T2                       2                            27
  T3                      21                            88
  T4                       1                            13
                               vv
clus                            N0 N1 N2
  DEL PEAK 12(6P25.3) CNV       15  4  5
  DEL PEAK 12(6P25.3) WILD-TYPE 68 41 27
D37V6, multiclass
    clus
vv   DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  N0                      15                            68
  N1                       4                            41
  N2                       5                            27
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK 12(6P25.3) CNV        18   2   0   3
  DEL PEAK 12(6P25.3) WILD-TYPE 105  20   2  10
D37V7, multiclass
     clus
vv    DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  M0                       18                           105
  M1                        2                            20
  M1A                       0                             2
  MX                        3                            10
                               vv
clus                             I II III IV
  DEL PEAK 12(6P25.3) CNV        2 13   5  3
  DEL PEAK 12(6P25.3) WILD-TYPE 28 37  45 22
D37V8, multiclass
     clus
vv    DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  I                         2                            28
  II                       13                            37
  III                       5                            45
  IV                        3                            22
D37V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) CNV          2   22
  DEL PEAK 12(6P25.3) WILD-TYPE    4  134
     clus
vv    DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  NO                        2                             4
  YES                      22                           134
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 12(6P25.3) CNV        18   0   2   1
  DEL PEAK 12(6P25.3) WILD-TYPE 103   2  10   2
D37V10, multiclass
    clus
vv   DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  R0                      18                           103
  R1                       0                             2
  R2                       2                            10
  RX                       1                             2
D37V11, continuous

Clustering(38) Variable = Del Peak 13(6q26)
D38V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 13(6Q26) CNV       17  1
  DEL PEAK 13(6Q26) WILD-TYPE 97 10
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                         18                         107 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                          1                          10 
$`DEL PEAK 13(6Q26) CNV`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 
       11.77        10.62        13.55        19.10        12.72        17.62 
TCGA-AG-3587 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A011 TCGA-AH-6544 TCGA-AH-6644 
        1.02         1.02        13.91        17.03         0.49         0.72 
TCGA-CI-6623 TCGA-DC-6682 TCGA-DT-5265 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6641 
        9.37         3.98         0.26         0.76        18.25        20.91 

$`DEL PEAK 13(6Q26) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       19.53        15.85        10.39        14.50         8.45         7.59 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 
        6.35         7.33         1.02         1.02         2.01         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.95         1.02         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 
        0.99        20.94         6.02        25.94        23.01        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.02         1.02         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       63.98        10.98        51.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 
       61.94        40.96        38.01         1.45         0.69         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 
        1.81        10.19         6.02         6.02         6.94         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        5.03         8.98         7.36         6.97        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
       19.99         5.92         5.00       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      121.08        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        7.63         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.66         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        2.73         5.23         7.79         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.46        47.70        47.08 

      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                       0.26                        0.16 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                      20.91                      121.08 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                     11.195                       6.020 
[1] "0.3 - 20.9 (11.2)" "0.2 - 121.1 (6.0)"
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6641 
      "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6641 
      "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3581                  TCGA-AG-3582 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3583                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-3599                  TCGA-AG-3726 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3727                  TCGA-AG-3731 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3742                  TCGA-AG-3878 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3999                  TCGA-AG-4001 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4007                  TCGA-AG-4008 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4022                  TCGA-AG-A002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A008                  TCGA-AG-A00C 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00H                  TCGA-AG-A00Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A011                  TCGA-AG-A014 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A015                  TCGA-AG-A016 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01J                  TCGA-AG-A01L 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01N                  TCGA-AG-A01W 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01Y                  TCGA-AG-A020 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A023                  TCGA-AG-A025 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A026                  TCGA-AG-A02G 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02N                  TCGA-AG-A02X 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A032                  TCGA-AH-6544 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AH-6547                  TCGA-AH-6643 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6644                  TCGA-AH-6897 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6903                  TCGA-BM-6198 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6619                  TCGA-CI-6620 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6622                  TCGA-CI-6623 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-CI-6624                  TCGA-CL-4957 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5917                  TCGA-CL-5918 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4745                  TCGA-DC-4749 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5337                  TCGA-DC-5869 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6154                  TCGA-DC-6155 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6156                  TCGA-DC-6157 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6158                  TCGA-DC-6160 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6681                  TCGA-DC-6682 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-DC-6683                  TCGA-DT-5265 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-DY-A0XA                  TCGA-DY-A1DC 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DD                  TCGA-DY-A1DE 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DF                  TCGA-DY-A1DG 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1H8                  TCGA-EF-5830 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5831                  TCGA-EI-6506 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6507                  TCGA-EI-6508 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6509                  TCGA-EI-6510 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6511                  TCGA-EI-6512 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6513                  TCGA-EI-6514 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6881                  TCGA-EI-6882 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6883                  TCGA-EI-6884 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6885                  TCGA-EI-6917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7002                  TCGA-EI-7004 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6465                  TCGA-F5-6571 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6702                  TCGA-F5-6810 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6811                  TCGA-F5-6812 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6813                  TCGA-F5-6814 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6861                  TCGA-F5-6863 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-F5-6864                  TCGA-G5-6233 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-G5-6235                  TCGA-G5-6572 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6641 
      "DEL PEAK 13(6Q26) CNV" 
[1] "hr=" "2.7"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) CNV         10   20
  DEL PEAK 13(6Q26) WILD-TYPE   64   68
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  FEMALE                    10                          64
  MALE                      20                          68
D38V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) CNV         22    6
  DEL PEAK 13(6Q26) WILD-TYPE  121    7
                                clus
vv                               DEL PEAK 13(6Q26) CNV
  RECTAL ADENOCARCINOMA                             22
  RECTAL MUCINOUS ADENOCARCINOMA                     6
                                clus
vv                               DEL PEAK 13(6Q26) WILD-TYPE
  RECTAL ADENOCARCINOMA                                  121
  RECTAL MUCINOUS ADENOCARCINOMA                           7
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 13(6Q26) CNV        3  3 21  3
  DEL PEAK 13(6Q26) WILD-TYPE  6 26 88 11
D38V5, multiclass
    clus
vv   DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  T1                     3                           6
  T2                     3                          26
  T3                    21                          88
  T4                     3                          11
                             vv
clus                          N0 N1 N2
  DEL PEAK 13(6Q26) CNV       16  4  9
  DEL PEAK 13(6Q26) WILD-TYPE 67 41 23
D38V6, multiclass
    clus
vv   DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  N0                    16                          67
  N1                     4                          41
  N2                     9                          23
                             vv
clus                           M0  M1 M1A  MX
  DEL PEAK 13(6Q26) CNV        22   4   0   4
  DEL PEAK 13(6Q26) WILD-TYPE 101  18   2   9
D38V7, multiclass
     clus
vv    DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  M0                     22                         101
  M1                      4                          18
  M1A                     0                           2
  MX                      4                           9
                             vv
clus                           I II III IV
  DEL PEAK 13(6Q26) CNV        5 12   7  3
  DEL PEAK 13(6Q26) WILD-TYPE 25 38  43 22
D38V8, multiclass
     clus
vv    DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  I                       5                          25
  II                     12                          38
  III                     7                          43
  IV                      3                          22
D38V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) CNV          2   28
  DEL PEAK 13(6Q26) WILD-TYPE    4  128
     clus
vv    DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  NO                      2                           4
  YES                    28                         128
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK 13(6Q26) CNV        21   0   3   1
  DEL PEAK 13(6Q26) WILD-TYPE 100   2   9   2
D38V10, multiclass
    clus
vv   DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  R0                    21                         100
  R1                     0                           2
  R2                     3                           9
  RX                     1                           2
D38V11, continuous

Clustering(39) Variable = Del Peak 14(7q31.1)
D39V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 14(7Q31.1) CNV         2   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 112  11
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                           123 
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            0                            11 
$`DEL PEAK 14(7Q31.1) CNV`
TCGA-AG-A008 TCGA-DC-6682 
       13.91         3.98 

$`DEL PEAK 14(7Q31.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
        6.35         7.33         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         1.02         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         0.99        20.94         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       23.01        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
       10.19         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        5.03         8.98         7.36         6.97        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         5.00         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       57.24       121.08        24.13        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        2.40         7.63         0.16         2.17         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
        3.98         0.66         6.90         7.10         6.15         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        3.98         2.73         5.23         7.79         2.76         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        0.69         0.53         1.08         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       47.70        47.08        20.91 

      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                         3.98                          0.16 
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                        13.91                        121.08 
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                        8.945                         6.350 
[1] "4.0 - 13.9 (8.9)"  "0.2 - 121.1 (6.3)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK 14(7Q31.1) CNV" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 14(7Q31.1) WILD-TYPE"       "DEL PEAK 14(7Q31.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK 14(7Q31.1) CNV" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 14(7Q31.1) WILD-TYPE"       "DEL PEAK 14(7Q31.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
      "DEL PEAK 14(7Q31.1) CNV" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 14(7Q31.1) WILD-TYPE"       "DEL PEAK 14(7Q31.1) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
[1] "Remove cluster labels:"  "DEL PEAK 14(7Q31.1) CNV"
clus
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                           123 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3727                    TCGA-AG-3731 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4007                    TCGA-AG-4008 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6683                    TCGA-DT-5265 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5831                    TCGA-EI-6506 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6885                    TCGA-EI-6917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6702                    TCGA-F5-6810 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6813                    TCGA-F5-6814 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6864                    TCGA-G5-6233 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" 
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) CNV          2    2
  DEL PEAK 14(7Q31.1) WILD-TYPE   72   86
        clus
vv       DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  FEMALE                       2                            72
  MALE                         2                            86
D39V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) CNV          3    1
  DEL PEAK 14(7Q31.1) WILD-TYPE  140   12
                                clus
vv                               DEL PEAK 14(7Q31.1) CNV
  RECTAL ADENOCARCINOMA                                3
  RECTAL MUCINOUS ADENOCARCINOMA                       1
                                clus
vv                               DEL PEAK 14(7Q31.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    140
  RECTAL MUCINOUS ADENOCARCINOMA                            12
                               vv
clus                             T1  T2  T3  T4
  DEL PEAK 14(7Q31.1) CNV         0   1   3   0
  DEL PEAK 14(7Q31.1) WILD-TYPE   9  28 106  14
D39V5, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  T1                       0                             9
  T2                       1                            28
  T3                       3                           106
  T4                       0                            14
                               vv
clus                            N0 N1 N2
  DEL PEAK 14(7Q31.1) CNV        3  0  1
  DEL PEAK 14(7Q31.1) WILD-TYPE 80 45 31
D39V6, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  N0                       3                            80
  N1                       0                            45
  N2                       1                            31
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK 14(7Q31.1) CNV         4   0   0   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 119  22   2  13
D39V7, multiclass
     clus
vv    DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  M0                        4                           119
  M1                        0                            22
  M1A                       0                             2
  MX                        0                            13
                               vv
clus                             I II III IV
  DEL PEAK 14(7Q31.1) CNV        1  2   1  0
  DEL PEAK 14(7Q31.1) WILD-TYPE 29 48  49 25
D39V8, multiclass
     clus
vv    DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  I                         1                            29
  II                        2                            48
  III                       1                            49
  IV                        0                            25
D39V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) CNV          0    4
  DEL PEAK 14(7Q31.1) WILD-TYPE    6  152
     clus
vv    DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  NO                        0                             6
  YES                       4                           152
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 14(7Q31.1) CNV         4   0   0   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 117   2  12   3
D39V10, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  R0                       4                           117
  R1                       0                             2
  R2                       0                            12
  RX                       0                             3
D39V11, continuous

Clustering(40) Variable = Del Peak 15(8p23.2)
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(8P23.2) CNV       68  7
  DEL PEAK 15(8P23.2) WILD-TYPE 46  4
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                           75                            50 
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                            7                             4 
$`DEL PEAK 15(8P23.2) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       12.72        17.62        10.39         7.59         6.35         7.33 
TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3893 
        1.02         1.02         1.02         0.95         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00H 
        1.02         1.02         1.02         1.02        20.94        25.94 
TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       23.01        15.91         1.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        51.98         1.94        38.93 
TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6624 TCGA-CL-4957 
       40.96         1.45         0.72        10.19         4.70        13.97 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 
       60.00        10.98        11.01         5.03         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
       27.91         6.97         3.98         5.00         0.26       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6511 
       41.33        57.24       121.08         0.49         2.40         3.98 
TCGA-EI-6513 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 
        6.90         3.98         2.73         5.23         2.76         2.04 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 
        0.85         2.17         0.39         0.66         0.69         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6641 
        0.46        18.25        20.91 

$`DEL PEAK 15(8P23.2) WILD-TYPE`
TCGA-AF-4110 TCGA-AF-5654 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3731 
       14.50         8.45         1.02         2.01         0.99         1.02 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4022 TCGA-AG-A008 
        0.99         0.92         1.02         0.99         0.99        13.91 
TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A032 
        6.02        17.03        13.02        49.94        61.94        38.01 
TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 
        0.49         0.69         4.60         1.81         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5918 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6160 
        6.94         9.37         7.99         9.99         8.98        19.99 
TCGA-DC-6681 TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 
        5.92        24.13        51.48        32.58         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6881 
        2.17         8.22         0.46         0.66         7.10         6.15 
TCGA-EI-6882 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6811 TCGA-F5-6814 TCGA-F5-6861 
        3.55         7.79         3.39         1.02         0.53         1.08 
TCGA-G5-6235 TCGA-G5-6572 
       47.70        47.08 

      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                         0.26                          0.16 
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                       121.08                         61.94 
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                         6.97                          6.02 
[1] "0.3 - 121.1 (7.0)" "0.2 - 61.9 (6.0)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3727                    TCGA-AG-3731 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A023                    TCGA-AG-A025 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-5917                    TCGA-CL-5918 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3727                    TCGA-AG-3731 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A023                    TCGA-AG-A025 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-5917                    TCGA-CL-5918 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3581                    TCGA-AG-3582 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3583                    TCGA-AG-3587 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3726 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3727                    TCGA-AG-3731 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3742                    TCGA-AG-3878 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3999                    TCGA-AG-4001 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4007                    TCGA-AG-4008 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4022                    TCGA-AG-A002 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A008                    TCGA-AG-A00C 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A023                    TCGA-AG-A025 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-5917                    TCGA-CL-5918 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6156                    TCGA-DC-6157 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6158                    TCGA-DC-6160 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6682 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6683                    TCGA-DT-5265 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A0XA                    TCGA-DY-A1DC 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DD                    TCGA-DY-A1DE 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DF                    TCGA-DY-A1DG 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1H8                    TCGA-EF-5830 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EF-5831                    TCGA-EI-6506 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6507                    TCGA-EI-6508 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6509                    TCGA-EI-6510 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6511                    TCGA-EI-6512 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6513                    TCGA-EI-6514 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6881                    TCGA-EI-6882 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6883                    TCGA-EI-6884 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6885                    TCGA-EI-6917 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-7002                    TCGA-EI-7004 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6465                    TCGA-F5-6571 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6702                    TCGA-F5-6810 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6811                    TCGA-F5-6812 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6813                    TCGA-F5-6814 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6861                    TCGA-F5-6863 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6864                    TCGA-G5-6233 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-G5-6235                    TCGA-G5-6572 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6641 
      "DEL PEAK 15(8P23.2) CNV" 
[1] "hr=" "1.3"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) CNV         45   55
  DEL PEAK 15(8P23.2) WILD-TYPE   29   33
        clus
vv       DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  FEMALE                      45                            29
  MALE                        55                            33
D40V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) CNV         89    7
  DEL PEAK 15(8P23.2) WILD-TYPE   54    6
                                clus
vv                               DEL PEAK 15(8P23.2) CNV
  RECTAL ADENOCARCINOMA                               89
  RECTAL MUCINOUS ADENOCARCINOMA                       7
                                clus
vv                               DEL PEAK 15(8P23.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     54
  RECTAL MUCINOUS ADENOCARCINOMA                             6
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 15(8P23.2) CNV        3 18 68 11
  DEL PEAK 15(8P23.2) WILD-TYPE  6 11 41  3
D40V5, multiclass
    clus
vv   DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  T1                       3                             6
  T2                      18                            11
  T3                      68                            41
  T4                      11                             3
                               vv
clus                            N0 N1 N2
  DEL PEAK 15(8P23.2) CNV       48 29 22
  DEL PEAK 15(8P23.2) WILD-TYPE 35 16 10
D40V6, multiclass
    clus
vv   DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  N0                      48                            35
  N1                      29                            16
  N2                      22                            10
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 15(8P23.2) CNV       74 15   1  9
  DEL PEAK 15(8P23.2) WILD-TYPE 49  7   1  4
D40V7, multiclass
     clus
vv    DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  M0                       74                            49
  M1                       15                             7
  M1A                       1                             1
  MX                        9                             4
                               vv
clus                             I II III IV
  DEL PEAK 15(8P23.2) CNV       16 31  32 16
  DEL PEAK 15(8P23.2) WILD-TYPE 14 19  18  9
D40V8, multiclass
     clus
vv    DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  I                        16                            14
  II                       31                            19
  III                      32                            18
  IV                       16                             9
D40V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) CNV          6   94
  DEL PEAK 15(8P23.2) WILD-TYPE    0   62
     clus
vv    DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  NO                        6                             0
  YES                      94                            62
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 15(8P23.2) CNV       73  1 10  2
  DEL PEAK 15(8P23.2) WILD-TYPE 48  1  2  1
D40V10, multiclass
    clus
vv   DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  R0                      73                            48
  R1                       1                             1
  R2                      10                             2
  RX                       2                             1
D40V11, continuous

Clustering(41) Variable = Del Peak 16(8p11.21)
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(8P11.21) CNV       15  2
  DEL PEAK 16(8P11.21) WILD-TYPE 99  9
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                            17                            108 
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                             2                              9 
$`DEL PEAK 16(8P11.21) CNV`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3582 TCGA-AG-3726 TCGA-AG-3742 
       15.85        13.55        12.72         1.02         1.02         0.99 
TCGA-AG-4008 TCGA-AG-A011 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-BM-6198 
        1.02        17.03        12.00        70.03        38.93        10.19 
TCGA-DC-5869 TCGA-DC-6156 TCGA-DY-A1DG TCGA-EI-7002 TCGA-F5-6810 
        5.03         6.97        51.48         2.76         0.39 

$`DEL PEAK 16(8P11.21) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 
       19.53        11.77        10.62        19.10        17.62        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 
       14.50         8.45         7.59         6.35         7.33         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3878 
        2.01         1.02         0.99         0.95         1.02         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N 
       23.01        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N 
       63.98        10.98        51.98        49.94         1.94        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 
       40.96        38.01         0.49         1.45         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        4.60         1.81         6.02         6.02         6.94         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        4.70        13.97        60.00         7.99        10.98        11.01 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        9.99         8.98         7.36        27.91         6.97        19.99 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
        5.92         3.98         5.00         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
       57.24       121.08        24.13        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        7.63         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.66         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        2.73         5.23         7.79         2.04         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        2.17         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        47.70        47.08        20.91 

      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                        10.190                          6.085 
[1] "0.4 - 70.0 (10.2)" "0.2 - 121.1 (6.1)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) CNV          9   15
  DEL PEAK 16(8P11.21) WILD-TYPE   65   73
        clus
vv       DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  FEMALE                        9                             65
  MALE                         15                             73
D41V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) CNV         20    2
  DEL PEAK 16(8P11.21) WILD-TYPE  123   11
                                clus
vv                               DEL PEAK 16(8P11.21) CNV
  RECTAL ADENOCARCINOMA                                20
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 16(8P11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     123
  RECTAL MUCINOUS ADENOCARCINOMA                             11
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 16(8P11.21) CNV        1  3 19  1
  DEL PEAK 16(8P11.21) WILD-TYPE  8 26 90 13
D41V5, multiclass
    clus
vv   DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  T1                        1                              8
  T2                        3                             26
  T3                       19                             90
  T4                        1                             13
                                vv
clus                             N0 N1 N2
  DEL PEAK 16(8P11.21) CNV       12  8  4
  DEL PEAK 16(8P11.21) WILD-TYPE 71 37 28
D41V6, multiclass
    clus
vv   DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  N0                       12                             71
  N1                        8                             37
  N2                        4                             28
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 16(8P11.21) CNV        15   6   1   1
  DEL PEAK 16(8P11.21) WILD-TYPE 108  16   1  12
D41V7, multiclass
     clus
vv    DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  M0                        15                            108
  M1                         6                             16
  M1A                        1                              1
  MX                         1                             12
                                vv
clus                              I II III IV
  DEL PEAK 16(8P11.21) CNV        3  9   5  6
  DEL PEAK 16(8P11.21) WILD-TYPE 27 41  45 19
D41V8, multiclass
     clus
vv    DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  I                          3                             27
  II                         9                             41
  III                        5                             45
  IV                         6                             19
D41V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) CNV          2   22
  DEL PEAK 16(8P11.21) WILD-TYPE    4  134
     clus
vv    DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  NO                         2                              4
  YES                       22                            134
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 16(8P11.21) CNV        18   0   3   0
  DEL PEAK 16(8P11.21) WILD-TYPE 103   2   9   3
D41V10, multiclass
    clus
vv   DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  R0                       18                            103
  R1                        0                              2
  R2                        3                              9
  RX                        0                              3
D41V11, continuous

Clustering(42) Variable = Del Peak 17(10q21.1)
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(10Q21.1) CNV       28  1
  DEL PEAK 17(10Q21.1) WILD-TYPE 86 10
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                            29                             96 
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                             1                             10 
$`DEL PEAK 17(10Q21.1) CNV`
TCGA-AF-2687 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3587 
       19.53        13.55        12.72         7.59         7.33         1.02 
TCGA-AG-3887 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L 
        0.92        13.91         6.02        25.94        23.01        12.00 
TCGA-AG-A026 TCGA-AG-A02X TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-6155 
        1.94        40.96         6.94         4.70        13.97         7.36 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DE TCGA-EI-6509 
       27.91         6.97         3.98         5.00       121.08         8.22 
TCGA-EI-6514 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
        7.10         6.15         2.17         0.46        20.91 

$`DEL PEAK 17(10Q21.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 
       15.85        11.77        10.62        19.10        17.62        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       14.50         8.45         6.35         1.02         1.02         2.01 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         1.02         0.95         1.02         0.99         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        1.02         0.99        20.94        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 
       51.98        49.94        38.93        61.94        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6623 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        6.02         6.02         9.37        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 
       11.01         9.99         5.03         8.98         6.97        19.99 
TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF 
        5.92         0.26       119.51        41.33        57.24        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 
       51.48        32.58         0.49         2.40         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 
        2.17         0.46         3.98         0.66         6.90         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        3.98         2.73         5.23         7.79         2.76         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        3.39         0.85         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76        18.25        47.70        47.08 

      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                          7.36                           5.13 
[1] "0.5 - 121.1 (7.4)" "0.2 - 119.5 (5.1)"
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 17(10Q21.1) CNV" 
[1] "hr=" "2"  
D42V2, continuous
D42V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) CNV         15   22
  DEL PEAK 17(10Q21.1) WILD-TYPE   59   66
        clus
vv       DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  FEMALE                       15                             59
  MALE                         22                             66
D42V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) CNV         31    5
  DEL PEAK 17(10Q21.1) WILD-TYPE  112    8
                                clus
vv                               DEL PEAK 17(10Q21.1) CNV
  RECTAL ADENOCARCINOMA                                31
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               DEL PEAK 17(10Q21.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     112
  RECTAL MUCINOUS ADENOCARCINOMA                              8
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 17(10Q21.1) CNV        1  8 25  3
  DEL PEAK 17(10Q21.1) WILD-TYPE  8 21 84 11
D42V5, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  T1                        1                              8
  T2                        8                             21
  T3                       25                             84
  T4                        3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK 17(10Q21.1) CNV       21 11  5
  DEL PEAK 17(10Q21.1) WILD-TYPE 62 34 27
D42V6, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  N0                       21                             62
  N1                       11                             34
  N2                        5                             27
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 17(10Q21.1) CNV       33  1   0  3
  DEL PEAK 17(10Q21.1) WILD-TYPE 90 21   2 10
D42V7, multiclass
     clus
vv    DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  M0                        33                             90
  M1                         1                             21
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                              I II III IV
  DEL PEAK 17(10Q21.1) CNV        7 14  14  2
  DEL PEAK 17(10Q21.1) WILD-TYPE 23 36  36 23
D42V8, multiclass
     clus
vv    DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  I                          7                             23
  II                        14                             36
  III                       14                             36
  IV                         2                             23
D42V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) CNV          4   33
  DEL PEAK 17(10Q21.1) WILD-TYPE    2  123
     clus
vv    DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  NO                         4                              2
  YES                       33                            123
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 17(10Q21.1) CNV       30  1  0  0
  DEL PEAK 17(10Q21.1) WILD-TYPE 91  1 12  3
D42V10, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  R0                       30                             91
  R1                        1                              1
  R2                        0                             12
  RX                        0                              3
D42V11, continuous

Clustering(43) Variable = Del Peak 18(10q25.2)
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(10Q25.2) CNV       33  2
  DEL PEAK 18(10Q25.2) WILD-TYPE 81  9
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                            35                             90 
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                             2                              9 
$`DEL PEAK 18(10Q25.2) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-6136 TCGA-AF-6672 
       19.53        15.85        13.55        12.72         7.59         7.33 
TCGA-AG-3887 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A01L 
        0.92         1.02        13.91        25.94        17.03        12.00 
TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A02X TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6624 
       70.03        10.98        40.96         4.60        10.19         4.70 
TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DE 
        7.36        27.91        19.99         3.98         5.00       121.08 
TCGA-DY-A1DF TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-7002 
       24.13         2.40         8.22         7.10         6.15         2.76 
TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6864 TCGA-G5-6572 TCGA-G5-6641 
        2.17         0.66         0.46        47.08        20.91 

$`DEL PEAK 18(10Q25.2) WILD-TYPE`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 
       11.77        10.62        19.10        17.62        10.39        14.50 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
        8.45         6.35         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         1.02         0.95         1.02         0.99         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 
        0.99        20.94         6.02        23.01        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A025 
        1.02         1.02        12.00        63.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
        1.94        38.93        61.94        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        0.69         0.72         1.81         6.02         6.02         6.94 
TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        9.37        13.97        60.00         7.99        10.98        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 
        9.99         5.03         8.98         6.97         6.97         5.92 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 
        0.26       119.51        41.33        57.24        51.48        32.58 
TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6511 
        0.49         7.63         0.16         2.17         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        0.66         6.90         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 
        7.79         2.04         3.39         0.85         0.39         1.02 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 
        0.69         0.53         1.08         0.76        18.25        47.70 

      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                         10.19                           5.13 
[1] "0.5 - 121.1 (10.2)" "0.2 - 119.5 (5.1)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 18(10Q25.2) CNV" 
[1] "hr=" "1.9"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) CNV         22   25
  DEL PEAK 18(10Q25.2) WILD-TYPE   52   63
        clus
vv       DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  FEMALE                       22                             52
  MALE                         25                             63
D43V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) CNV         38    7
  DEL PEAK 18(10Q25.2) WILD-TYPE  105    6
                                clus
vv                               DEL PEAK 18(10Q25.2) CNV
  RECTAL ADENOCARCINOMA                                38
  RECTAL MUCINOUS ADENOCARCINOMA                        7
                                clus
vv                               DEL PEAK 18(10Q25.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     105
  RECTAL MUCINOUS ADENOCARCINOMA                              6
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 18(10Q25.2) CNV        1  8 36  1
  DEL PEAK 18(10Q25.2) WILD-TYPE  8 21 73 13
D43V5, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  T1                        1                              8
  T2                        8                             21
  T3                       36                             73
  T4                        1                             13
                                vv
clus                             N0 N1 N2
  DEL PEAK 18(10Q25.2) CNV       24 12 10
  DEL PEAK 18(10Q25.2) WILD-TYPE 59 33 22
D43V6, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  N0                       24                             59
  N1                       12                             33
  N2                       10                             22
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 18(10Q25.2) CNV       38  4   0  3
  DEL PEAK 18(10Q25.2) WILD-TYPE 85 18   2 10
D43V7, multiclass
     clus
vv    DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  M0                        38                             85
  M1                         4                             18
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                              I II III IV
  DEL PEAK 18(10Q25.2) CNV        7 17  17  4
  DEL PEAK 18(10Q25.2) WILD-TYPE 23 33  33 21
D43V8, multiclass
     clus
vv    DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  I                          7                             23
  II                        17                             33
  III                       17                             33
  IV                         4                             21
D43V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) CNV          5   42
  DEL PEAK 18(10Q25.2) WILD-TYPE    1  114
     clus
vv    DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  NO                         5                              1
  YES                       42                            114
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 18(10Q25.2) CNV       39  0  1  0
  DEL PEAK 18(10Q25.2) WILD-TYPE 82  2 11  3
D43V10, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  R0                       39                             82
  R1                        0                              2
  R2                        1                             11
  RX                        0                              3
D43V11, continuous

Clustering(44) Variable = Del Peak 19(11q22.3)
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(11Q22.3) CNV       28  1
  DEL PEAK 19(11Q22.3) WILD-TYPE 86 10
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                            29                             96 
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                             1                             10 
$`DEL PEAK 19(11Q22.3) CNV`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 
       10.62        13.55        19.10        14.50         7.59         7.33 
TCGA-AG-3581 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-A008 TCGA-AG-A01L TCGA-AG-A01W 
        1.02         1.02         0.95        13.91        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
       63.98        10.98        40.96         0.49         0.69         0.72 
TCGA-BM-6198 TCGA-CL-4957 TCGA-DC-6155 TCGA-DC-6158 TCGA-DC-6160 TCGA-DT-5265 
       10.19        13.97         7.36         6.97        19.99         0.26 
TCGA-DY-A1DF TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6881 TCGA-EI-7004 
       24.13         2.17         8.22         6.15         2.04 

$`DEL PEAK 19(11Q22.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       19.53        15.85        11.77        12.72        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 
        8.45         6.35         1.02         2.01         0.99         1.02 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.99         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       20.94         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A023 TCGA-AG-A025 
       13.02         1.02         1.02        12.00        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6897 
        1.94        38.93        61.94        38.01         1.45         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
        1.81         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
        8.98         6.97        27.91         5.92         3.98         5.00 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 
      119.51        41.33        57.24       121.08        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6511 
        0.49         2.40         7.63         0.16         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        0.66         6.90         7.10         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        5.23         7.79         2.76         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        47.70        47.08        20.91 

      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                         8.220                          5.575 
[1] "0.3 - 70.0 (8.2)"  "0.2 - 121.1 (5.6)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" 
[1] "hr=" "2.8"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) CNV         18   19
  DEL PEAK 19(11Q22.3) WILD-TYPE   56   69
        clus
vv       DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  FEMALE                       18                             56
  MALE                         19                             69
D44V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) CNV         27    6
  DEL PEAK 19(11Q22.3) WILD-TYPE  116    7
                                clus
vv                               DEL PEAK 19(11Q22.3) CNV
  RECTAL ADENOCARCINOMA                                27
  RECTAL MUCINOUS ADENOCARCINOMA                        6
                                clus
vv                               DEL PEAK 19(11Q22.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     116
  RECTAL MUCINOUS ADENOCARCINOMA                              7
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 19(11Q22.3) CNV        1  9 24  3
  DEL PEAK 19(11Q22.3) WILD-TYPE  8 20 85 11
D44V5, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  T1                        1                              8
  T2                        9                             20
  T3                       24                             85
  T4                        3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK 19(11Q22.3) CNV       18 11  7
  DEL PEAK 19(11Q22.3) WILD-TYPE 65 34 25
D44V6, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  N0                       18                             65
  N1                       11                             34
  N2                        7                             25
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 19(11Q22.3) CNV       30  1   0  5
  DEL PEAK 19(11Q22.3) WILD-TYPE 93 21   2  8
D44V7, multiclass
     clus
vv    DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  M0                        30                             93
  M1                         1                             21
  M1A                        0                              2
  MX                         5                              8
                                vv
clus                              I II III IV
  DEL PEAK 19(11Q22.3) CNV        9  9  14  3
  DEL PEAK 19(11Q22.3) WILD-TYPE 21 41  36 22
D44V8, multiclass
     clus
vv    DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  I                          9                             21
  II                         9                             41
  III                       14                             36
  IV                         3                             22
D44V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) CNV          3   34
  DEL PEAK 19(11Q22.3) WILD-TYPE    3  122
     clus
vv    DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  NO                         3                              3
  YES                       34                            122
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 19(11Q22.3) CNV       28  0  0  1
  DEL PEAK 19(11Q22.3) WILD-TYPE 93  2 12  2
D44V10, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  R0                       28                             93
  R1                        0                              2
  R2                        0                             12
  RX                        1                              2
D44V11, continuous

Clustering(45) Variable = Del Peak 20(12p13.1)
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(12P13.1) CNV       21  4
  DEL PEAK 20(12P13.1) WILD-TYPE 93  7
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                            25                            100 
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                             4                              7 
$`DEL PEAK 20(12P13.1) CNV`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 
       10.62        13.55        19.10        10.39        14.50         7.59 
TCGA-AF-6655 TCGA-AG-3731 TCGA-AG-A00C TCGA-AG-A01W TCGA-AG-A026 TCGA-AH-6544 
        6.35         1.02         6.02        70.03         1.94         0.49 
TCGA-CI-6620 TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6158 TCGA-DY-A1DF TCGA-DY-A1DG 
        6.02        11.01         7.36         6.97        24.13        51.48 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6812 
        2.17         8.22         7.10         6.15         2.17         0.66 
TCGA-G5-6641 
       20.91 

$`DEL PEAK 20(12P13.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-5654 
       19.53        15.85        11.77        12.72        17.62         8.45 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
        7.33         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.95         0.99         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        0.99        20.94        13.91        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        51.98        49.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       40.96        38.01         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
        1.81        10.19         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 
       13.97        60.00         7.99        10.98         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 
        8.98         6.97        27.91        19.99         5.92         3.98 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        5.00         0.26       119.51        41.33        57.24       121.08 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 
       32.58         0.49         2.40         7.63         0.16         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        3.98         0.66         6.90         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        5.23         7.79         2.76         2.04         3.39         0.85 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        0.39         1.02         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.46        18.25        47.70        47.08 

      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                          0.49                           0.16 
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                          7.36                           5.13 
[1] "0.5 - 70.0 (7.4)"  "0.2 - 121.1 (5.1)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 20(12P13.1) CNV" 
[1] "hr=" "2.8"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) CNV         16   17
  DEL PEAK 20(12P13.1) WILD-TYPE   58   71
        clus
vv       DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  FEMALE                       16                             58
  MALE                         17                             71
D45V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) CNV         29    1
  DEL PEAK 20(12P13.1) WILD-TYPE  114   12
                                clus
vv                               DEL PEAK 20(12P13.1) CNV
  RECTAL ADENOCARCINOMA                                29
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               DEL PEAK 20(12P13.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     114
  RECTAL MUCINOUS ADENOCARCINOMA                             12
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 20(12P13.1) CNV        2  5 24  2
  DEL PEAK 20(12P13.1) WILD-TYPE  7 24 85 12
D45V5, multiclass
    clus
vv   DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  T1                        2                              7
  T2                        5                             24
  T3                       24                             85
  T4                        2                             12
                                vv
clus                             N0 N1 N2
  DEL PEAK 20(12P13.1) CNV       14 14  5
  DEL PEAK 20(12P13.1) WILD-TYPE 69 31 27
D45V6, multiclass
    clus
vv   DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  N0                       14                             69
  N1                       14                             31
  N2                        5                             27
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 20(12P13.1) CNV        22   7   0   4
  DEL PEAK 20(12P13.1) WILD-TYPE 101  15   2   9
D45V7, multiclass
     clus
vv    DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  M0                        22                            101
  M1                         7                             15
  M1A                        0                              2
  MX                         4                              9
                                vv
clus                              I II III IV
  DEL PEAK 20(12P13.1) CNV        4 10  11  6
  DEL PEAK 20(12P13.1) WILD-TYPE 26 40  39 19
D45V8, multiclass
     clus
vv    DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  I                          4                             26
  II                        10                             40
  III                       11                             39
  IV                         6                             19
D45V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) CNV          1   32
  DEL PEAK 20(12P13.1) WILD-TYPE    5  124
     clus
vv    DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  NO                         1                              5
  YES                       32                            124
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 20(12P13.1) CNV       24  1  2  0
  DEL PEAK 20(12P13.1) WILD-TYPE 97  1 10  3
D45V10, multiclass
    clus
vv   DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  R0                       24                             97
  R1                        1                              1
  R2                        2                             10
  RX                        0                              3
D45V11, continuous

Clustering(46) Variable = Del Peak 21(12q21.33)
D46V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 21(12Q21.33) CNV       18  2
  DEL PEAK 21(12Q21.33) WILD-TYPE 96  9
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                             20                             105 
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                              2                               9 
$`DEL PEAK 21(12Q21.33) CNV`
TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-4001 TCGA-AG-A00Y 
       10.62        12.72        14.50         7.59         1.02        23.01 
TCGA-AG-A014 TCGA-AG-A032 TCGA-AH-6544 TCGA-DC-6155 TCGA-DC-6158 TCGA-DY-A1DE 
       15.91        38.01         0.49         7.36         6.97       121.08 
TCGA-DY-A1DF TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-F5-6702 
       24.13         8.22         7.10         6.15         3.98         2.17 
TCGA-F5-6812 TCGA-G5-6233 
        0.66        18.25 

$`DEL PEAK 21(12Q21.33) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       19.53        15.85        11.77        13.55        19.10        17.62 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 
       10.39         8.45         6.35         7.33         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        2.01         1.02         0.99         1.02         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
        6.02        25.94        17.03        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 
       49.94         1.94        38.93        61.94        40.96         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 
        0.69         0.72         4.60         1.81        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
        6.97        27.91        19.99         5.92         3.98         5.00 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 
        0.26       119.51        41.33        57.24        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
        0.49         2.40         7.63         0.16         2.17         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 
        3.98         0.66         6.90         3.55         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
        7.79         2.76         2.04         3.39         0.85         0.39 
TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        1.02         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       47.70        47.08        20.91 

      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                           0.49                            0.16 
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                         121.08                          119.51 
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                          7.905                           5.920 
[1] "0.5 - 121.1 (7.9)" "0.2 - 119.5 (5.9)"
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6683                      TCGA-DT-5265 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6683                      TCGA-DT-5265 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3583                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6619                      TCGA-CI-6620 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6683                      TCGA-DT-5265 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" 
[1] "hr=" "1.5"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) CNV         13   15
  DEL PEAK 21(12Q21.33) WILD-TYPE   61   73
        clus
vv       DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  FEMALE                        13                              61
  MALE                          15                              73
D46V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) CNV         26    1
  DEL PEAK 21(12Q21.33) WILD-TYPE  117   12
                                clus
vv                               DEL PEAK 21(12Q21.33) CNV
  RECTAL ADENOCARCINOMA                                 26
  RECTAL MUCINOUS ADENOCARCINOMA                         1
                                clus
vv                               DEL PEAK 21(12Q21.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      117
  RECTAL MUCINOUS ADENOCARCINOMA                              12
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 21(12Q21.33) CNV        1  4 22  1
  DEL PEAK 21(12Q21.33) WILD-TYPE  8 25 87 13
D46V5, multiclass
    clus
vv   DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  T1                         1                               8
  T2                         4                              25
  T3                        22                              87
  T4                         1                              13
                                 vv
clus                              N0 N1 N2
  DEL PEAK 21(12Q21.33) CNV       16  7  5
  DEL PEAK 21(12Q21.33) WILD-TYPE 67 38 27
D46V6, multiclass
    clus
vv   DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  N0                        16                              67
  N1                         7                              38
  N2                         5                              27
                                 vv
clus                              M0 M1 M1A MX
  DEL PEAK 21(12Q21.33) CNV       24  2   0  2
  DEL PEAK 21(12Q21.33) WILD-TYPE 99 20   2 11
D46V7, multiclass
     clus
vv    DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  M0                         24                              99
  M1                          2                              20
  M1A                         0                               2
  MX                          2                              11
                                 vv
clus                               I II III IV
  DEL PEAK 21(12Q21.33) CNV        4 13   8  2
  DEL PEAK 21(12Q21.33) WILD-TYPE 26 37  42 23
D46V8, multiclass
     clus
vv    DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  I                           4                              26
  II                         13                              37
  III                         8                              42
  IV                          2                              23
D46V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) CNV          2   26
  DEL PEAK 21(12Q21.33) WILD-TYPE    4  130
     clus
vv    DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  NO                          2                               4
  YES                        26                             130
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 21(12Q21.33) CNV       24  0  0  0
  DEL PEAK 21(12Q21.33) WILD-TYPE 97  2 12  3
D46V10, multiclass
    clus
vv   DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  R0                        24                              97
  R1                         0                               2
  R2                         0                              12
  RX                         0                               3
D46V11, continuous

Clustering(47) Variable = Del Peak 22(14q11.2)
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(14Q11.2) CNV       48  5
  DEL PEAK 22(14Q11.2) WILD-TYPE 66  6
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                            53                             72 
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                             5                              6 
$`DEL PEAK 22(14Q11.2) CNV`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-6672 
       15.85        13.55        19.10        12.72        17.62         7.33 
TCGA-AG-3581 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 
        1.02         0.95         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A026 TCGA-AG-A02G 
        1.02         6.02        25.94        23.01         1.94        38.93 
TCGA-AG-A032 TCGA-AH-6544 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6623 
       38.01         0.49        10.19         6.02         6.02         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 
        4.70        13.97         7.99        11.01         5.03         7.36 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DE TCGA-DY-A1DF 
       27.91         6.97         3.98         5.00       121.08        24.13 
TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6513 TCGA-EI-6514 
       51.48         7.63         2.17         8.22         6.90         7.10 
TCGA-EI-6881 TCGA-EI-6884 TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 
        6.15         2.73         2.76         0.85         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6641 
        0.66         0.76        18.25        47.70        20.91 

$`DEL PEAK 22(14Q11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 
       19.53        11.77        10.62        10.39        14.50         8.45 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
        7.59         6.35         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 
        1.02         1.02         0.99         0.92         1.02         0.99 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A014 
        1.02         0.99        20.94        13.91        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.02         1.02         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98        51.98        49.94        61.94        40.96 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 
        1.45         0.69         0.72         4.60         1.81         6.94 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 
       60.00        10.98         9.99         8.98         6.97        19.99 
TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1H8 
        5.92         0.26       119.51        41.33        57.24        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        0.49         2.40         0.16         0.46         3.98         0.66 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
        3.55         3.98         5.23         7.79         2.04         3.39 
TCGA-F5-6702 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6572 
        2.17         0.69         0.53         1.08         0.46        47.08 

      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                         6.970                          5.575 
[1] "0.4 - 121.1 (7.0)" "0.2 - 119.5 (5.6)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 22(14Q11.2) CNV" 
[1] "hr=" "2.1"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) CNV         28   39
  DEL PEAK 22(14Q11.2) WILD-TYPE   46   49
        clus
vv       DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  FEMALE                       28                             46
  MALE                         39                             49
D47V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) CNV         63    2
  DEL PEAK 22(14Q11.2) WILD-TYPE   80   11
                                clus
vv                               DEL PEAK 22(14Q11.2) CNV
  RECTAL ADENOCARCINOMA                                63
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 22(14Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      80
  RECTAL MUCINOUS ADENOCARCINOMA                             11
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 22(14Q11.2) CNV        3 11 49  4
  DEL PEAK 22(14Q11.2) WILD-TYPE  6 18 60 10
D47V5, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  T1                        3                              6
  T2                       11                             18
  T3                       49                             60
  T4                        4                             10
                                vv
clus                             N0 N1 N2
  DEL PEAK 22(14Q11.2) CNV       33 23 11
  DEL PEAK 22(14Q11.2) WILD-TYPE 50 22 21
D47V6, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  N0                       33                             50
  N1                       23                             22
  N2                       11                             21
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 22(14Q11.2) CNV       52  8   0  6
  DEL PEAK 22(14Q11.2) WILD-TYPE 71 14   2  7
D47V7, multiclass
     clus
vv    DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  M0                        52                             71
  M1                         8                             14
  M1A                        0                              2
  MX                         6                              7
                                vv
clus                              I II III IV
  DEL PEAK 22(14Q11.2) CNV       11 23  24  7
  DEL PEAK 22(14Q11.2) WILD-TYPE 19 27  26 18
D47V8, multiclass
     clus
vv    DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  I                         11                             19
  II                        23                             27
  III                       24                             26
  IV                         7                             18
D47V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) CNV          4   63
  DEL PEAK 22(14Q11.2) WILD-TYPE    2   93
     clus
vv    DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  NO                         4                              2
  YES                       63                             93
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 22(14Q11.2) CNV       49  2  2  1
  DEL PEAK 22(14Q11.2) WILD-TYPE 72  0 10  2
D47V10, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  R0                       49                             72
  R1                        2                              0
  R2                        2                             10
  RX                        1                              2
D47V11, continuous

Clustering(48) Variable = Del Peak 23(14q31.1)
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(14Q31.1) CNV       50  5
  DEL PEAK 23(14Q31.1) WILD-TYPE 64  6
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                            55                             70 
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                             5                              6 
$`DEL PEAK 23(14Q31.1) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3911 TCGA-AG-3582 TCGA-AG-3587 
       15.85        11.77        13.55        17.62         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3893 TCGA-AG-4001 
        0.99         0.95         1.02         0.99         0.99         1.02 
TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01W TCGA-AG-A026 
        1.02         6.02        25.94        23.01        70.03         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
       38.93        38.01         0.49        10.19         6.02         6.02 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        9.37         4.70        13.97         7.99        10.98        11.01 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 
        5.03         7.36        27.91         6.97         3.98         5.00 
TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6509 TCGA-EI-6513 
       41.33       121.08        51.48         7.63         8.22         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-F5-6571 
        7.10         6.15         3.98         2.73         2.76         0.85 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 
        0.39         1.02         0.66         0.76        18.25        47.70 
TCGA-G5-6641 
       20.91 

$`DEL PEAK 23(14Q31.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3913 TCGA-AF-4110 
       19.53        10.62        19.10        12.72        10.39        14.50 
TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3583 
        8.45         7.59         6.35         7.33         1.02         2.01 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 
        1.02         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A014 
        1.02         0.99        20.94        13.91        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y 
       13.02         1.02         1.02        12.00        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 
       10.98        51.98        49.94        61.94        40.96         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 TCGA-CL-5917 
        0.69         0.72         4.60         1.81         6.94        60.00 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 
        9.99         8.98         6.97        19.99         5.92         0.26 
TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      119.51        57.24        24.13        32.58         0.49         2.40 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6882 
        0.16         2.17         0.46         3.98         0.66         3.55 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6813 
        5.23         7.79         2.04         3.39         2.17         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6572 
        0.53         1.08         0.46        47.08 

      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                         6.900                          6.135 
[1] "0.4 - 121.1 (6.9)" "0.2 - 119.5 (6.1)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 23(14Q31.1) CNV" 
[1] "hr=" "1.4"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) CNV         28   41
  DEL PEAK 23(14Q31.1) WILD-TYPE   46   47
        clus
vv       DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  FEMALE                       28                             46
  MALE                         41                             47
D48V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) CNV         65    1
  DEL PEAK 23(14Q31.1) WILD-TYPE   78   12
                                clus
vv                               DEL PEAK 23(14Q31.1) CNV
  RECTAL ADENOCARCINOMA                                65
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               DEL PEAK 23(14Q31.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      78
  RECTAL MUCINOUS ADENOCARCINOMA                             12
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 23(14Q31.1) CNV        3 10 53  3
  DEL PEAK 23(14Q31.1) WILD-TYPE  6 19 56 11
D48V5, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  T1                        3                              6
  T2                       10                             19
  T3                       53                             56
  T4                        3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK 23(14Q31.1) CNV       35 25  9
  DEL PEAK 23(14Q31.1) WILD-TYPE 48 20 23
D48V6, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  N0                       35                             48
  N1                       25                             20
  N2                        9                             23
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 23(14Q31.1) CNV       54 10   0  4
  DEL PEAK 23(14Q31.1) WILD-TYPE 69 12   2  9
D48V7, multiclass
     clus
vv    DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  M0                        54                             69
  M1                        10                             12
  M1A                        0                              2
  MX                         4                              9
                                vv
clus                              I II III IV
  DEL PEAK 23(14Q31.1) CNV       10 26  22  8
  DEL PEAK 23(14Q31.1) WILD-TYPE 20 24  28 17
D48V8, multiclass
     clus
vv    DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  I                         10                             20
  II                        26                             24
  III                       22                             28
  IV                         8                             17
D48V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) CNV          2   67
  DEL PEAK 23(14Q31.1) WILD-TYPE    4   89
     clus
vv    DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  NO                         2                              4
  YES                       67                             89
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 23(14Q31.1) CNV       50  2  4  1
  DEL PEAK 23(14Q31.1) WILD-TYPE 71  0  8  2
D48V10, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  R0                       50                             71
  R1                        2                              0
  R2                        4                              8
  RX                        1                              2
D48V11, continuous

Clustering(49) Variable = Del Peak 24(15q22.33)
D49V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 24(15Q22.33) CNV       51  6
  DEL PEAK 24(15Q22.33) WILD-TYPE 63  5
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                             57                              68 
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                              6                               5 
$`DEL PEAK 24(15Q22.33) CNV`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       19.53        10.62        13.55        12.72        17.62        14.50 
TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3742 TCGA-AG-3893 TCGA-AG-3999 
        7.33         1.02         2.01         0.99         0.99         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J 
        1.02        13.91        25.94        23.01        17.03         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       12.00        70.03        38.93        40.96        38.01         0.49 
TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-CL-5918 TCGA-DC-4745 
        0.69        10.19         6.02         9.37         7.99        10.98 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DC 
        5.03         7.36        27.91         3.98         5.00        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       57.24       121.08        24.13        51.48         0.49         2.40 
TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        3.98         7.10         6.15         3.98         2.73         5.23 
TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        2.76         0.85         2.17         1.02         0.66         0.69 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6641 
        0.46        18.25        20.91 

$`DEL PEAK 24(15Q22.33) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 
       15.85        11.77        19.10        10.39         8.45         7.59 
TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        6.35         1.02         1.02         0.99         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4001 
        1.02         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A014 TCGA-AG-A015 
        1.02         0.99        20.94         6.02        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
        1.02        12.00        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02N TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        1.94        61.94         1.45         0.72         4.60         1.81 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4749 
        6.02         6.94         4.70        13.97        60.00        11.01 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        9.99         8.98         6.97         6.97        19.99         5.92 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
        0.26       119.51        32.58         7.63         0.16         2.17 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6917 
        8.22         0.46         0.66         6.90         3.55         7.79 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        2.04         3.39         0.39         0.53         1.08         0.76 
TCGA-G5-6235 TCGA-G5-6572 
       47.70        47.08 

      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                           0.46                            0.16 
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                         121.08                          119.51 
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                           7.33                            6.02 
[1] "0.5 - 121.1 (7.3)" "0.2 - 119.5 (6.0)"
                     TCGA-AF-2687                      TCGA-AF-2689 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6641 
      "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6641 
      "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3742                      TCGA-AG-3878 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6644                      TCGA-AH-6897 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6624                      TCGA-CL-4957 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6158                      TCGA-DC-6160 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6885                      TCGA-EI-6917 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6811                      TCGA-F5-6812 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6864                      TCGA-G5-6233 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6641 
      "DEL PEAK 24(15Q22.33) CNV" 
[1] "hr=" "1.4"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) CNV         31   44
  DEL PEAK 24(15Q22.33) WILD-TYPE   43   44
        clus
vv       DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  FEMALE                        31                              43
  MALE                          44                              44
D49V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) CNV         66    6
  DEL PEAK 24(15Q22.33) WILD-TYPE   77    7
                                clus
vv                               DEL PEAK 24(15Q22.33) CNV
  RECTAL ADENOCARCINOMA                                 66
  RECTAL MUCINOUS ADENOCARCINOMA                         6
                                clus
vv                               DEL PEAK 24(15Q22.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       77
  RECTAL MUCINOUS ADENOCARCINOMA                               7
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 24(15Q22.33) CNV        4  7 60  4
  DEL PEAK 24(15Q22.33) WILD-TYPE  5 22 49 10
D49V5, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  T1                         4                               5
  T2                         7                              22
  T3                        60                              49
  T4                         4                              10
                                 vv
clus                              N0 N1 N2
  DEL PEAK 24(15Q22.33) CNV       34 25 16
  DEL PEAK 24(15Q22.33) WILD-TYPE 49 20 16
D49V6, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  N0                        34                              49
  N1                        25                              20
  N2                        16                              16
                                 vv
clus                              M0 M1 M1A MX
  DEL PEAK 24(15Q22.33) CNV       57 11   0  6
  DEL PEAK 24(15Q22.33) WILD-TYPE 66 11   2  7
D49V7, multiclass
     clus
vv    DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  M0                         57                              66
  M1                         11                              11
  M1A                         0                               2
  MX                          6                               7
                                 vv
clus                               I II III IV
  DEL PEAK 24(15Q22.33) CNV        8 27  27 12
  DEL PEAK 24(15Q22.33) WILD-TYPE 22 23  23 13
D49V8, multiclass
     clus
vv    DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  I                           8                              22
  II                         27                              23
  III                        27                              23
  IV                         12                              13
D49V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) CNV          5   70
  DEL PEAK 24(15Q22.33) WILD-TYPE    1   86
     clus
vv    DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  NO                          5                               1
  YES                        70                              86
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 24(15Q22.33) CNV       57  0  4  1
  DEL PEAK 24(15Q22.33) WILD-TYPE 64  2  8  2
D49V10, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  R0                        57                              64
  R1                         0                               2
  R2                         4                               8
  RX                         1                               2
D49V11, continuous

Clustering(50) Variable = Del Peak 25(16p13.3)
D50V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 25(16P13.3) CNV         5   2
  DEL PEAK 25(16P13.3) WILD-TYPE 109   9
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                             7                            118 
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                             2                              9 
$`DEL PEAK 25(16P13.3) CNV`
TCGA-AG-3726 TCGA-AG-A02G TCGA-DC-6682 TCGA-EI-6882 TCGA-F5-6811 TCGA-F5-6814 
        1.02        38.93         3.98         3.55         1.02         0.53 
TCGA-G5-6233 
       18.25 

$`DEL PEAK 25(16P13.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
        6.35         7.33         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        0.99         0.95         1.02         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       23.01        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       49.94         1.94        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        8.98         7.36         6.97        27.91         6.97        19.99 
TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        5.92         5.00         0.26       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      121.08        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        7.63         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 
        0.66         6.90         7.10         6.15         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        5.23         7.79         2.76         2.04         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 
        2.17         0.39         0.66         0.69         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        47.70        47.08        20.91 

      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                          0.53                           0.16 
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                         38.93                         121.08 
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                          3.55                           6.92 
[1] "0.5 - 38.9 (3.5)"  "0.2 - 121.1 (6.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" 
[1] "hr=" "8.4"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) CNV          6    7
  DEL PEAK 25(16P13.3) WILD-TYPE   68   81
        clus
vv       DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  FEMALE                        6                             68
  MALE                          7                             81
D50V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) CNV         10    2
  DEL PEAK 25(16P13.3) WILD-TYPE  133   11
                                clus
vv                               DEL PEAK 25(16P13.3) CNV
  RECTAL ADENOCARCINOMA                                10
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 25(16P13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     133
  RECTAL MUCINOUS ADENOCARCINOMA                             11
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 25(16P13.3) CNV        0  3 10  0
  DEL PEAK 25(16P13.3) WILD-TYPE  9 26 99 14
D50V5, multiclass
    clus
vv   DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  T1                        0                              9
  T2                        3                             26
  T3                       10                             99
  T4                        0                             14
                                vv
clus                             N0 N1 N2
  DEL PEAK 25(16P13.3) CNV        8  1  4
  DEL PEAK 25(16P13.3) WILD-TYPE 75 44 28
D50V6, multiclass
    clus
vv   DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  N0                        8                             75
  N1                        1                             44
  N2                        4                             28
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 25(16P13.3) CNV        11   2   0   0
  DEL PEAK 25(16P13.3) WILD-TYPE 112  20   2  13
D50V7, multiclass
     clus
vv    DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  M0                        11                            112
  M1                         2                             20
  M1A                        0                              2
  MX                         0                             13
                                vv
clus                              I II III IV
  DEL PEAK 25(16P13.3) CNV        1  8   2  2
  DEL PEAK 25(16P13.3) WILD-TYPE 29 42  48 23
D50V8, multiclass
     clus
vv    DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  I                          1                             29
  II                         8                             42
  III                        2                             48
  IV                         2                             23
D50V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) CNV          0   13
  DEL PEAK 25(16P13.3) WILD-TYPE    6  143
     clus
vv    DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  NO                         0                              6
  YES                       13                            143
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 25(16P13.3) CNV        10   0   1   0
  DEL PEAK 25(16P13.3) WILD-TYPE 111   2  11   3
D50V10, multiclass
    clus
vv   DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  R0                       10                            111
  R1                        0                              2
  R2                        1                             11
  RX                        0                              3
D50V11, continuous

Clustering(51) Variable = Del Peak 26(16q23.1)
D51V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 26(16Q23.1) CNV        12   1
  DEL PEAK 26(16Q23.1) WILD-TYPE 102  10
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                            13                            112 
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                             1                             10 
$`DEL PEAK 26(16Q23.1) CNV`
TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3726 TCGA-AH-6544 TCGA-AH-6644 TCGA-DC-6682 
        7.33         1.02         1.02         0.49         0.72         3.98 
TCGA-DY-A1DE TCGA-EI-6883 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6811 TCGA-F5-6814 
      121.08         3.98         2.76         2.04         1.02         0.53 
TCGA-G5-6233 
       18.25 

$`DEL PEAK 26(16Q23.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 
        6.35         1.02         2.01         1.02         0.99         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.99         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       70.03        63.98        10.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 
       38.93        61.94        40.96        38.01         1.45         0.69 
TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        4.60         1.81        10.19         6.02         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       11.01         9.99         5.03         8.98         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 
       27.91         6.97        19.99         5.92         5.00         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
      119.51        41.33        57.24        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
        0.49         2.40         7.63         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
        0.46         3.98         0.66         6.90         7.10         6.15 
TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6571 
        3.55         2.73         5.23         7.79         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 
        2.17         0.39         0.66         0.69         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        47.70        47.08        20.91 

      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                          0.49                           0.16 
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                          2.04                           6.97 
[1] "0.5 - 121.1 (2.0)" "0.2 - 119.5 (7.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 26(16Q23.1) CNV"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 26(16Q23.1) CNV"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 26(16Q23.1) CNV"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) CNV         11   12
  DEL PEAK 26(16Q23.1) WILD-TYPE   63   76
        clus
vv       DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  FEMALE                       11                             63
  MALE                         12                             76
D51V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) CNV         20    2
  DEL PEAK 26(16Q23.1) WILD-TYPE  123   11
                                clus
vv                               DEL PEAK 26(16Q23.1) CNV
  RECTAL ADENOCARCINOMA                                20
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 26(16Q23.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     123
  RECTAL MUCINOUS ADENOCARCINOMA                             11
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 26(16Q23.1) CNV        0  4 16  3
  DEL PEAK 26(16Q23.1) WILD-TYPE  9 25 93 11
D51V5, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  T1                        0                              9
  T2                        4                             25
  T3                       16                             93
  T4                        3                             11
                                vv
clus                             N0 N1 N2
  DEL PEAK 26(16Q23.1) CNV       11  2  9
  DEL PEAK 26(16Q23.1) WILD-TYPE 72 43 23
D51V6, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  N0                       11                             72
  N1                        2                             43
  N2                        9                             23
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 26(16Q23.1) CNV        17   4   0   2
  DEL PEAK 26(16Q23.1) WILD-TYPE 106  18   2  11
D51V7, multiclass
     clus
vv    DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  M0                        17                            106
  M1                         4                             18
  M1A                        0                              2
  MX                         2                             11
                                vv
clus                              I II III IV
  DEL PEAK 26(16Q23.1) CNV        3  9   4  5
  DEL PEAK 26(16Q23.1) WILD-TYPE 27 41  46 20
D51V8, multiclass
     clus
vv    DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  I                          3                             27
  II                         9                             41
  III                        4                             46
  IV                         5                             20
D51V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) CNV          1   22
  DEL PEAK 26(16Q23.1) WILD-TYPE    5  134
     clus
vv    DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  NO                         1                              5
  YES                       22                            134
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 26(16Q23.1) CNV        16   0   1   0
  DEL PEAK 26(16Q23.1) WILD-TYPE 105   2  11   3
D51V10, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  R0                       16                            105
  R1                        0                              2
  R2                        1                             11
  RX                        0                              3
D51V11, continuous

Clustering(52) Variable = Del Peak 27(17p12)
D52V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 27(17P12) CNV       77  6
  DEL PEAK 27(17P12) WILD-TYPE 37  5
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                          83                           42 
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                           6                            5 
$`DEL PEAK 27(17P12) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       15.85        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 
       17.62        14.50         7.59         6.35         1.02         1.02 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3893 
        1.02         1.02         0.95         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L 
       25.94        23.01        17.03        15.91         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02X 
       12.00        70.03        63.98        51.98         1.94        40.96 
TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6619 
        0.49         0.69         0.72         4.60        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-6155 
        6.02         6.94        13.97         7.99        11.01         7.36 
TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.97         6.97        19.99         3.98         5.00         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      119.51        41.33        57.24       121.08        24.13        51.48 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 
        0.49         2.40         2.17         8.22         0.46         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 
        6.90         7.10         6.15         3.98         2.73         2.76 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 
        2.04         3.39         0.85         2.17         0.39         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.69         0.53         0.76         0.46        47.70 

$`DEL PEAK 27(17P12) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6672 TCGA-AG-3583 TCGA-AG-3599 
       19.53        10.39         8.45         7.33         2.01         0.99 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4022 TCGA-AG-A002 
        0.99         0.92         1.02         0.99         0.99        20.94 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       13.02         1.02        10.98        49.94        38.93        61.94 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6903 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 
       38.01         1.45         1.81         9.37         4.70        60.00 
TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 TCGA-DC-6681 
       10.98         9.99         5.03         8.98        27.91         5.92 
TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6511 TCGA-EI-6882 TCGA-EI-6885 
       32.58         7.63         0.16         3.98         3.55         5.23 
TCGA-EI-6917 TCGA-F5-6811 TCGA-F5-6861 TCGA-G5-6233 TCGA-G5-6572 TCGA-G5-6641 
        7.79         1.02         1.08        18.25        47.08        20.91 

      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                        0.26                         0.16 
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                      121.08                        61.94 
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                        6.02                         7.71 
[1] "0.3 - 121.1 (6.0)" "0.2 - 61.9 (7.7)" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2692                   TCGA-AF-2693 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3400                   TCGA-AF-3911 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-6655                   TCGA-AF-6672 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3727                   TCGA-AG-3731 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3742                   TCGA-AG-3878 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4007                   TCGA-AG-4008 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A011                   TCGA-AG-A014 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6644                   TCGA-AH-6897 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6619                   TCGA-CI-6620 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6622                   TCGA-CI-6623 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6156                   TCGA-DC-6157 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6683                   TCGA-DT-5265 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EF-5831                   TCGA-EI-6506 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6509                   TCGA-EI-6510 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6513                   TCGA-EI-6514 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6881                   TCGA-EI-6882 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6465                   TCGA-F5-6571 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6702                   TCGA-F5-6810 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6811                   TCGA-F5-6812 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6813                   TCGA-F5-6814 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6864                   TCGA-G5-6233 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2692                   TCGA-AF-2693 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3400                   TCGA-AF-3911 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-6655                   TCGA-AF-6672 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3727                   TCGA-AG-3731 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3742                   TCGA-AG-3878 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4007                   TCGA-AG-4008 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A011                   TCGA-AG-A014 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6644                   TCGA-AH-6897 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6619                   TCGA-CI-6620 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6622                   TCGA-CI-6623 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6156                   TCGA-DC-6157 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6683                   TCGA-DT-5265 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EF-5831                   TCGA-EI-6506 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6509                   TCGA-EI-6510 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6513                   TCGA-EI-6514 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6881                   TCGA-EI-6882 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6465                   TCGA-F5-6571 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6702                   TCGA-F5-6810 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6811                   TCGA-F5-6812 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6813                   TCGA-F5-6814 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6864                   TCGA-G5-6233 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2692                   TCGA-AF-2693 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3400                   TCGA-AF-3911 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-6655                   TCGA-AF-6672 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3581                   TCGA-AG-3582 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3583                   TCGA-AG-3587 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3726 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3727                   TCGA-AG-3731 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3742                   TCGA-AG-3878 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3999                   TCGA-AG-4001 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4007                   TCGA-AG-4008 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4022                   TCGA-AG-A002 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A008                   TCGA-AG-A00C 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00H                   TCGA-AG-A00Y 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A011                   TCGA-AG-A014 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A015                   TCGA-AG-A016 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A01J                   TCGA-AG-A01L 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01N                   TCGA-AG-A01W 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01Y                   TCGA-AG-A020 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A023                   TCGA-AG-A025 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A026                   TCGA-AG-A02G 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02N                   TCGA-AG-A02X 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A032                   TCGA-AH-6544 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6547                   TCGA-AH-6643 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6644                   TCGA-AH-6897 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6903                   TCGA-BM-6198 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6619                   TCGA-CI-6620 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6622                   TCGA-CI-6623 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CI-6624                   TCGA-CL-4957 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CL-5917                   TCGA-CL-5918 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-4745                   TCGA-DC-4749 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-5337                   TCGA-DC-5869 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6154                   TCGA-DC-6155 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6156                   TCGA-DC-6157 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6158                   TCGA-DC-6160 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6681                   TCGA-DC-6682 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6683                   TCGA-DT-5265 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A0XA                   TCGA-DY-A1DC 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DD                   TCGA-DY-A1DE 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DF                   TCGA-DY-A1DG 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1H8                   TCGA-EF-5830 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EF-5831                   TCGA-EI-6506 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6507                   TCGA-EI-6508 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6509                   TCGA-EI-6510 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6511                   TCGA-EI-6512 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6513                   TCGA-EI-6514 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6881                   TCGA-EI-6882 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6883                   TCGA-EI-6884 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6885                   TCGA-EI-6917 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-7002                   TCGA-EI-7004 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6465                   TCGA-F5-6571 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6702                   TCGA-F5-6810 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6811                   TCGA-F5-6812 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6813                   TCGA-F5-6814 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6861                   TCGA-F5-6863 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6864                   TCGA-G5-6233 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6235                   TCGA-G5-6572 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" 
[1] "hr=" "1.7"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) CNV         51   59
  DEL PEAK 27(17P12) WILD-TYPE   23   29
        clus
vv       DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  FEMALE                     51                           23
  MALE                       59                           29
D52V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) CNV         99    6
  DEL PEAK 27(17P12) WILD-TYPE   44    7
                                clus
vv                               DEL PEAK 27(17P12) CNV
  RECTAL ADENOCARCINOMA                              99
  RECTAL MUCINOUS ADENOCARCINOMA                      6
                                clus
vv                               DEL PEAK 27(17P12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    44
  RECTAL MUCINOUS ADENOCARCINOMA                            7
                              vv
clus                           T1 T2 T3 T4
  DEL PEAK 27(17P12) CNV        2 19 77 12
  DEL PEAK 27(17P12) WILD-TYPE  7 10 32  2
D52V5, multiclass
    clus
vv   DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  T1                      2                            7
  T2                     19                           10
  T3                     77                           32
  T4                     12                            2
                              vv
clus                           N0 N1 N2
  DEL PEAK 27(17P12) CNV       56 30 23
  DEL PEAK 27(17P12) WILD-TYPE 27 15  9
D52V6, multiclass
    clus
vv   DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  N0                     56                           27
  N1                     30                           15
  N2                     23                            9
                              vv
clus                           M0 M1 M1A MX
  DEL PEAK 27(17P12) CNV       83 16   1  9
  DEL PEAK 27(17P12) WILD-TYPE 40  6   1  4
D52V7, multiclass
     clus
vv    DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  M0                      83                           40
  M1                      16                            6
  M1A                      1                            1
  MX                       9                            4
                              vv
clus                            I II III IV
  DEL PEAK 27(17P12) CNV       16 38  34 18
  DEL PEAK 27(17P12) WILD-TYPE 14 12  16  7
D52V8, multiclass
     clus
vv    DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  I                       16                           14
  II                      38                           12
  III                     34                           16
  IV                      18                            7
D52V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) CNV          4  106
  DEL PEAK 27(17P12) WILD-TYPE    2   50
     clus
vv    DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  NO                       4                            2
  YES                    106                           50
                              vv
clus                           R0 R1 R2 RX
  DEL PEAK 27(17P12) CNV       80  2  9  2
  DEL PEAK 27(17P12) WILD-TYPE 41  0  3  1
D52V10, multiclass
    clus
vv   DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  R0                     80                           41
  R1                      2                            0
  R2                      9                            3
  RX                      2                            1
D52V11, continuous

Clustering(53) Variable = Del Peak 28(17p11.2)
D53V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(17P11.2) CNV       69  6
  DEL PEAK 28(17P11.2) WILD-TYPE 45  5
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                            75                             50 
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                             6                              5 
$`DEL PEAK 28(17P11.2) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       15.85        11.77        10.62        13.55        19.10        17.62 
TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 
       14.50         7.59         6.35         1.02         1.02         1.02 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3893 TCGA-AG-3999 
        1.02         0.95         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y 
       23.01        17.03        15.91        12.00        12.00        63.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6897 
       51.98         1.94        40.96         0.49         0.69         4.60 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5918 
       10.19         6.02         6.02         6.94        13.97         7.99 
TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6683 TCGA-DT-5265 
       11.01         7.36         6.97        19.99         5.00         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      119.51        41.33        57.24       121.08        24.13        51.48 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 
        0.49         2.40         2.17         8.22         0.46         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 
        6.90         7.10         6.15         3.98         2.73         2.76 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6814 
        2.04         3.39         0.85         2.17         0.66         0.53 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.76         0.46        47.70 

$`DEL PEAK 28(17P11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3400 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6672 TCGA-AG-3583 
       19.53        12.72        10.39         8.45         7.33         2.01 
TCGA-AG-3599 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4022 
        0.99         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-A002 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A020 
       20.94        13.02         1.02         1.02        70.03        10.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6644 
       49.94        38.93        61.94        38.01         1.45         0.72 
TCGA-AH-6903 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-5337 
        1.81         9.37         4.70        60.00        10.98         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DC-6682 
        5.03         8.98         6.97        27.91         5.92         3.98 
TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6511 TCGA-EI-6882 TCGA-EI-6885 
       32.58         7.63         0.16         3.98         3.55         5.23 
TCGA-EI-6917 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6861 TCGA-G5-6233 
        7.79         0.39         1.02         0.69         1.08        18.25 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                        121.08                          70.03 
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                          6.15                           7.15 
[1] "0.3 - 121.1 (6.2)" "0.2 - 70.0 (7.2)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) CNV         49   53
  DEL PEAK 28(17P11.2) WILD-TYPE   25   35
        clus
vv       DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  FEMALE                       49                             25
  MALE                         53                             35
D53V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) CNV         92    5
  DEL PEAK 28(17P11.2) WILD-TYPE   51    8
                                clus
vv                               DEL PEAK 28(17P11.2) CNV
  RECTAL ADENOCARCINOMA                                92
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               DEL PEAK 28(17P11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      51
  RECTAL MUCINOUS ADENOCARCINOMA                              8
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 28(17P11.2) CNV        2 19 71 10
  DEL PEAK 28(17P11.2) WILD-TYPE  7 10 38  4
D53V5, multiclass
    clus
vv   DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  T1                        2                              7
  T2                       19                             10
  T3                       71                             38
  T4                       10                              4
                                vv
clus                             N0 N1 N2
  DEL PEAK 28(17P11.2) CNV       51 31 20
  DEL PEAK 28(17P11.2) WILD-TYPE 32 14 12
D53V6, multiclass
    clus
vv   DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  N0                       51                             32
  N1                       31                             14
  N2                       20                             12
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 28(17P11.2) CNV       78 15   0  8
  DEL PEAK 28(17P11.2) WILD-TYPE 45  7   2  5
D53V7, multiclass
     clus
vv    DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  M0                        78                             45
  M1                        15                              7
  M1A                        0                              2
  MX                         8                              5
                                vv
clus                              I II III IV
  DEL PEAK 28(17P11.2) CNV       16 33  34 16
  DEL PEAK 28(17P11.2) WILD-TYPE 14 17  16  9
D53V8, multiclass
     clus
vv    DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  I                         16                             14
  II                        33                             17
  III                       34                             16
  IV                        16                              9
D53V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) CNV          3   99
  DEL PEAK 28(17P11.2) WILD-TYPE    3   57
     clus
vv    DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  NO                         3                              3
  YES                       99                             57
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 28(17P11.2) CNV       74  2  8  2
  DEL PEAK 28(17P11.2) WILD-TYPE 47  0  4  1
D53V10, multiclass
    clus
vv   DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  R0                       74                             47
  R1                        2                              0
  R2                        8                              4
  RX                        2                              1
D53V11, continuous

Clustering(54) Variable = Del Peak 29(17q25.3)
D54V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(17Q25.3) CNV       18  2
  DEL PEAK 29(17Q25.3) WILD-TYPE 96  9
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                            20                            105 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                             2                              9 
$`DEL PEAK 29(17Q25.3) CNV`
TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3581 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A01L 
       14.50         7.59         1.02        13.91        25.94        12.00 
TCGA-AG-A026 TCGA-AG-A02X TCGA-AH-6643 TCGA-BM-6198 TCGA-DC-4749 TCGA-DC-6155 
        1.94        40.96         0.69        10.19        11.01         7.36 
TCGA-DC-6158 TCGA-DT-5265 TCGA-DY-A1DF TCGA-EF-5831 TCGA-EI-6508 TCGA-EI-6881 
        6.97         0.26        24.13         2.40         2.17         6.15 
TCGA-F5-6812 TCGA-F5-6814 
        0.66         0.53 

$`DEL PEAK 29(17Q25.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 
       12.72        17.62        10.39         8.45         6.35         7.33 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.99         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       20.94         6.02        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 
       51.98        49.94        38.93        61.94        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 
        1.45         0.72         4.60         1.81         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 
       10.98         9.99         5.03         8.98         6.97        27.91 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         3.98         5.00       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 
       57.24       121.08        51.48        32.58         0.49         7.63 
TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        0.16         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
        7.10         3.55         3.98         2.73         5.23         7.79 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
        2.76         2.04         3.39         0.85         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        1.02         0.69         1.08         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       47.70        47.08        20.91 

      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                         40.96                         121.08 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                         7.165                          6.020 
[1] "0.3 - 41.0 (7.2)"  "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" 
[1] "hr=" "3.8"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) CNV          7   17
  DEL PEAK 29(17Q25.3) WILD-TYPE   67   71
        clus
vv       DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  FEMALE                        7                             67
  MALE                         17                             71
D54V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) CNV         21    2
  DEL PEAK 29(17Q25.3) WILD-TYPE  122   11
                                clus
vv                               DEL PEAK 29(17Q25.3) CNV
  RECTAL ADENOCARCINOMA                                21
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 29(17Q25.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     122
  RECTAL MUCINOUS ADENOCARCINOMA                             11
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 29(17Q25.3) CNV        0  7 15  2
  DEL PEAK 29(17Q25.3) WILD-TYPE  9 22 94 12
D54V5, multiclass
    clus
vv   DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  T1                        0                              9
  T2                        7                             22
  T3                       15                             94
  T4                        2                             12
                                vv
clus                             N0 N1 N2
  DEL PEAK 29(17Q25.3) CNV       14  6  4
  DEL PEAK 29(17Q25.3) WILD-TYPE 69 39 28
D54V6, multiclass
    clus
vv   DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  N0                       14                             69
  N1                        6                             39
  N2                        4                             28
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 29(17Q25.3) CNV        21   0   0   2
  DEL PEAK 29(17Q25.3) WILD-TYPE 102  22   2  11
D54V7, multiclass
     clus
vv    DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  M0                        21                            102
  M1                         0                             22
  M1A                        0                              2
  MX                         2                             11
                                vv
clus                              I II III IV
  DEL PEAK 29(17Q25.3) CNV        5  9   9  1
  DEL PEAK 29(17Q25.3) WILD-TYPE 25 41  41 24
D54V8, multiclass
     clus
vv    DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  I                          5                             25
  II                         9                             41
  III                        9                             41
  IV                         1                             24
D54V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) CNV          2   22
  DEL PEAK 29(17Q25.3) WILD-TYPE    4  134
     clus
vv    DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  NO                         2                              4
  YES                       22                            134
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 29(17Q25.3) CNV        20   1   0   1
  DEL PEAK 29(17Q25.3) WILD-TYPE 101   1  12   2
D54V10, multiclass
    clus
vv   DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  R0                       20                            101
  R1                        1                              1
  R2                        0                             12
  RX                        1                              2
D54V11, continuous

Clustering(55) Variable = Del Peak 30(18q21.2)
D55V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 30(18Q21.2) CNV       99 10
  DEL PEAK 30(18Q21.2) WILD-TYPE 15  1
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                           109                             16 
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                            10                              1 
$`DEL PEAK 30(18Q21.2) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 
       12.72        17.62        10.39        14.50         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 
        7.33         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3999 
        0.95         1.02         0.99         0.92         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J 
       25.94        23.01        17.03        15.91         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 
        1.94        38.93        40.96        38.01         0.49         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.72         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
       10.98        11.01         9.99         5.03         8.98         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 
        6.97        27.91         6.97        19.99         5.92         3.98 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        5.00         0.26       119.51        41.33        57.24       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 
       24.13        51.48         0.49         2.40         7.63         2.17 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
        8.22         0.46         3.98         0.66         6.90         7.10 
TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 
        6.15         3.98         2.73         5.23         2.76         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.69         0.76         0.46        18.25        47.70        47.08 
TCGA-G5-6641 
       20.91 

$`DEL PEAK 30(18Q21.2) WILD-TYPE`
TCGA-AF-5654 TCGA-AG-3599 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        8.45         0.99         0.99         1.02         0.99        20.94 
TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AH-6547 TCGA-DY-A1H8 TCGA-EI-6507 
       13.02        49.94        61.94         1.45        32.58         0.16 
TCGA-EI-6882 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
        3.55         7.79         0.53         1.08 

      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                        121.08                          61.94 
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                           6.9                            2.5 
[1] "0.3 - 121.1 (6.9)" "0.2 - 61.9 (2.5)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 30(18Q21.2) CNV" 
[1] "hr=" "1.6"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) CNV         65   78
  DEL PEAK 30(18Q21.2) WILD-TYPE    9   10
        clus
vv       DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  FEMALE                       65                              9
  MALE                         78                             10
D55V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) CNV        126   12
  DEL PEAK 30(18Q21.2) WILD-TYPE   17    1
                                clus
vv                               DEL PEAK 30(18Q21.2) CNV
  RECTAL ADENOCARCINOMA                               126
  RECTAL MUCINOUS ADENOCARCINOMA                       12
                                clus
vv                               DEL PEAK 30(18Q21.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      17
  RECTAL MUCINOUS ADENOCARCINOMA                              1
                                vv
clus                              T1  T2  T3  T4
  DEL PEAK 30(18Q21.2) CNV         5  23 101  13
  DEL PEAK 30(18Q21.2) WILD-TYPE   4   6   8   1
D55V5, multiclass
    clus
vv   DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  T1                        5                              4
  T2                       23                              6
  T3                      101                              8
  T4                       13                              1
                                vv
clus                             N0 N1 N2
  DEL PEAK 30(18Q21.2) CNV       68 43 30
  DEL PEAK 30(18Q21.2) WILD-TYPE 15  2  2
D55V6, multiclass
    clus
vv   DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  N0                       68                             15
  N1                       43                              2
  N2                       30                              2
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 30(18Q21.2) CNV       105  22   2  12
  DEL PEAK 30(18Q21.2) WILD-TYPE  18   0   0   1
D55V7, multiclass
     clus
vv    DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  M0                       105                             18
  M1                        22                              0
  M1A                        2                              0
  MX                        12                              1
                                vv
clus                              I II III IV
  DEL PEAK 30(18Q21.2) CNV       22 45  45 25
  DEL PEAK 30(18Q21.2) WILD-TYPE  8  5   5  0
D55V8, multiclass
     clus
vv    DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  I                         22                              8
  II                        45                              5
  III                       45                              5
  IV                        25                              0
D55V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) CNV          6  137
  DEL PEAK 30(18Q21.2) WILD-TYPE    0   19
     clus
vv    DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  NO                         6                              0
  YES                      137                             19
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 30(18Q21.2) CNV       104   2  12   3
  DEL PEAK 30(18Q21.2) WILD-TYPE  17   0   0   0
D55V10, multiclass
    clus
vv   DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  R0                      104                             17
  R1                        2                              0
  R2                       12                              0
  RX                        3                              0
D55V11, continuous

Clustering(56) Variable = Del Peak 31(18q22.1)
D56V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 31(18Q22.1) CNV       96 10
  DEL PEAK 31(18Q22.1) WILD-TYPE 18  1
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                           106                             19 
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                            10                              1 
$`DEL PEAK 31(18Q22.1) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 
       12.72        17.62        10.39        14.50         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 
        7.33         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 
        0.95         0.99         0.92         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         0.99        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       23.01        17.03        15.91         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        51.98         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
       38.93        40.96        38.01         0.49         0.69         0.72 
TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        4.60        10.19         6.02         6.02         6.94         9.37 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
        4.70        13.97        60.00         7.99        10.98        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
        9.99         5.03         8.98         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA 
        6.97        19.99         5.92         3.98         5.00       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
       41.33        57.24       121.08        24.13        51.48         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        2.40         7.63         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 
        0.66         6.90         7.10         6.15         3.98         2.73 
TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        5.23         2.76         2.04         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 
        0.39         1.02         0.66         0.69         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.70        47.08        20.91 

$`DEL PEAK 31(18Q22.1) WILD-TYPE`
TCGA-AF-5654 TCGA-AG-3599 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3894 
        8.45         0.99         1.02         0.99         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AH-6547 TCGA-AH-6903 
       20.94        13.02        49.94        61.94         1.45         1.81 
TCGA-DT-5265 TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 TCGA-F5-6814 
        0.26        32.58         0.16         3.55         7.79         0.53 
TCGA-F5-6861 
        1.08 

      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                        121.08                          61.94 
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                         6.955                          1.450 
[1] "0.4 - 121.1 (7.0)" "0.2 - 61.9 (1.4)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A011                     TCGA-AG-A014 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6641 
      "DEL PEAK 31(18Q22.1) CNV" 
[1] "hr=" "1.6"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) CNV         64   74
  DEL PEAK 31(18Q22.1) WILD-TYPE   10   14
        clus
vv       DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  FEMALE                       64                             10
  MALE                         74                             14
D56V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) CNV        124   10
  DEL PEAK 31(18Q22.1) WILD-TYPE   19    3
                                clus
vv                               DEL PEAK 31(18Q22.1) CNV
  RECTAL ADENOCARCINOMA                               124
  RECTAL MUCINOUS ADENOCARCINOMA                       10
                                clus
vv                               DEL PEAK 31(18Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      19
  RECTAL MUCINOUS ADENOCARCINOMA                              3
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 31(18Q22.1) CNV        5 23 96 13
  DEL PEAK 31(18Q22.1) WILD-TYPE  4  6 13  1
D56V5, multiclass
    clus
vv   DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  T1                        5                              4
  T2                       23                              6
  T3                       96                             13
  T4                       13                              1
                                vv
clus                             N0 N1 N2
  DEL PEAK 31(18Q22.1) CNV       67 40 29
  DEL PEAK 31(18Q22.1) WILD-TYPE 16  5  3
D56V6, multiclass
    clus
vv   DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  N0                       67                             16
  N1                       40                              5
  N2                       29                              3
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 31(18Q22.1) CNV       102  21   2  11
  DEL PEAK 31(18Q22.1) WILD-TYPE  21   1   0   2
D56V7, multiclass
     clus
vv    DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  M0                       102                             21
  M1                        21                              1
  M1A                        2                              0
  MX                        11                              2
                                vv
clus                              I II III IV
  DEL PEAK 31(18Q22.1) CNV       22 44  42 24
  DEL PEAK 31(18Q22.1) WILD-TYPE  8  6   8  1
D56V8, multiclass
     clus
vv    DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  I                         22                              8
  II                        44                              6
  III                       42                              8
  IV                        24                              1
D56V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) CNV          6  132
  DEL PEAK 31(18Q22.1) WILD-TYPE    0   24
     clus
vv    DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  NO                         6                              0
  YES                      132                             24
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 31(18Q22.1) CNV       102   2  11   2
  DEL PEAK 31(18Q22.1) WILD-TYPE  19   0   1   1
D56V10, multiclass
    clus
vv   DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  R0                      102                             19
  R1                        2                              0
  R2                       11                              1
  RX                        2                              1
D56V11, continuous

Clustering(57) Variable = Del Peak 32(19p13.3)
D57V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 32(19P13.3) CNV       27  3
  DEL PEAK 32(19P13.3) WILD-TYPE 87  8
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                            30                             95 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                             3                              8 
$`DEL PEAK 32(19P13.3) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-4110 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3893 
       19.53        15.85        14.50         1.02         1.02         0.99 
TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01Y TCGA-AG-A020 TCGA-CI-6619 
        1.02        15.91         1.02        63.98        10.98         6.02 
TCGA-CI-6620 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 
        6.02         4.70        13.97        11.01         5.03         7.36 
TCGA-DC-6158 TCGA-DT-5265 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EI-6509 
        6.97         0.26       121.08        24.13        51.48         8.22 
TCGA-EI-6513 TCGA-EI-6885 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-G5-6233 
        6.90         5.23         0.85         2.17         0.39        18.25 

$`DEL PEAK 32(19P13.3) WILD-TYPE`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 
       11.77        10.62        13.55        19.10        12.72        17.62 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 
       10.39         8.45         7.59         6.35         7.33         1.02 
TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        2.01         0.99         1.02         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       23.01        17.03        13.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 
       40.96        38.01         0.49         1.45         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 
        4.60         1.81        10.19         6.94         9.37        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 
        7.99        10.98         9.99         8.98         6.97        27.91 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         3.98         5.00       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 
       57.24        32.58         0.49         2.40         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6881 
        2.17         0.46         3.98         0.66         7.10         6.15 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        3.55         3.98         2.73         7.79         2.76         2.04 
TCGA-F5-6465 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        3.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        47.70        47.08        20.91 

      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                         6.935                          6.150 
[1] "0.3 - 121.1 (6.9)" "0.2 - 119.5 (6.2)"
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" 
[1] "hr=" "1.2"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) CNV         17   21
  DEL PEAK 32(19P13.3) WILD-TYPE   57   67
        clus
vv       DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  FEMALE                       17                             57
  MALE                         21                             67
D57V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) CNV         34    2
  DEL PEAK 32(19P13.3) WILD-TYPE  109   11
                                clus
vv                               DEL PEAK 32(19P13.3) CNV
  RECTAL ADENOCARCINOMA                                34
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 32(19P13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     109
  RECTAL MUCINOUS ADENOCARCINOMA                             11
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 32(19P13.3) CNV        0  7 29  2
  DEL PEAK 32(19P13.3) WILD-TYPE  9 22 80 12
D57V5, multiclass
    clus
vv   DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  T1                        0                              9
  T2                        7                             22
  T3                       29                             80
  T4                        2                             12
                                vv
clus                             N0 N1 N2
  DEL PEAK 32(19P13.3) CNV       17 13  8
  DEL PEAK 32(19P13.3) WILD-TYPE 66 32 24
D57V6, multiclass
    clus
vv   DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  N0                       17                             66
  N1                       13                             32
  N2                        8                             24
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 32(19P13.3) CNV       29  8   0  1
  DEL PEAK 32(19P13.3) WILD-TYPE 94 14   2 12
D57V7, multiclass
     clus
vv    DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  M0                        29                             94
  M1                         8                             14
  M1A                        0                              2
  MX                         1                             12
                                vv
clus                              I II III IV
  DEL PEAK 32(19P13.3) CNV        6 12  11  8
  DEL PEAK 32(19P13.3) WILD-TYPE 24 38  39 17
D57V8, multiclass
     clus
vv    DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  I                          6                             24
  II                        12                             38
  III                       11                             39
  IV                         8                             17
D57V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) CNV          1   37
  DEL PEAK 32(19P13.3) WILD-TYPE    5  119
     clus
vv    DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  NO                         1                              5
  YES                       37                            119
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 32(19P13.3) CNV       26  0  3  1
  DEL PEAK 32(19P13.3) WILD-TYPE 95  2  9  2
D57V10, multiclass
    clus
vv   DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  R0                       26                             95
  R1                        0                              2
  R2                        3                              9
  RX                        1                              2
D57V11, continuous

Clustering(58) Variable = Del Peak 33(20p12.1)
D58V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 33(20P12.1) CNV       38  7
  DEL PEAK 33(20P12.1) WILD-TYPE 76  4
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                            45                             80 
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                             7                              4 
$`DEL PEAK 33(20P12.1) CNV`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3726 
       15.85        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A008 
        0.95         0.99         1.02         1.02         0.99        13.91 
TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
       15.91         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AH-6547 TCGA-AH-6643 TCGA-CI-6624 TCGA-CL-5917 
        1.94        38.93         1.45         0.69         4.70        60.00 
TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 
       10.98         8.98         6.97        19.99         3.98         5.00 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6511 
       41.33        57.24        24.13        32.58         2.40         3.98 
TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7004 TCGA-F5-6571 
        0.66         6.15         3.98         2.73         2.04         0.85 
TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
        2.17         0.46        20.91 

$`DEL PEAK 33(20P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         1.02         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C 
        0.99         0.99         1.02         1.02        20.94         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 
       25.94        23.01        17.03        13.02         1.02        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98        49.94        61.94        40.96        38.01         0.49 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.72         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 
        6.94         9.37        13.97         7.99        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DT-5265 
        5.03         7.36         6.97        27.91         5.92         0.26 
TCGA-DY-A0XA TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 
      119.51       121.08        51.48         0.49         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 
        2.17         8.22         0.46         6.90         7.10         3.55 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6811 
        5.23         7.79         2.76         3.39         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 
        0.66         0.69         0.53         1.08         0.76        18.25 
TCGA-G5-6235 TCGA-G5-6572 
       47.70        47.08 

      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                         3.980                          7.035 
[1] "0.5 - 70.0 (4.0)"  "0.2 - 121.1 (7.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 33(20P12.1) CNV" 
[1] "hr=" "2.5"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) CNV         31   29
  DEL PEAK 33(20P12.1) WILD-TYPE   43   59
        clus
vv       DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  FEMALE                       31                             43
  MALE                         29                             59
D58V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) CNV         55    5
  DEL PEAK 33(20P12.1) WILD-TYPE   88    8
                                clus
vv                               DEL PEAK 33(20P12.1) CNV
  RECTAL ADENOCARCINOMA                                55
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               DEL PEAK 33(20P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      88
  RECTAL MUCINOUS ADENOCARCINOMA                              8
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 33(20P12.1) CNV        2 11 42  5
  DEL PEAK 33(20P12.1) WILD-TYPE  7 18 67  9
D58V5, multiclass
    clus
vv   DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  T1                        2                              7
  T2                       11                             18
  T3                       42                             67
  T4                        5                              9
                                vv
clus                             N0 N1 N2
  DEL PEAK 33(20P12.1) CNV       30 17 13
  DEL PEAK 33(20P12.1) WILD-TYPE 53 28 19
D58V6, multiclass
    clus
vv   DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  N0                       30                             53
  N1                       17                             28
  N2                       13                             19
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 33(20P12.1) CNV       47 10   0  3
  DEL PEAK 33(20P12.1) WILD-TYPE 76 12   2 10
D58V7, multiclass
     clus
vv    DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  M0                        47                             76
  M1                        10                             12
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                              I II III IV
  DEL PEAK 33(20P12.1) CNV        9 19  20  9
  DEL PEAK 33(20P12.1) WILD-TYPE 21 31  30 16
D58V8, multiclass
     clus
vv    DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  I                          9                             21
  II                        19                             31
  III                       20                             30
  IV                         9                             16
D58V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) CNV          0   60
  DEL PEAK 33(20P12.1) WILD-TYPE    6   96
     clus
vv    DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  NO                         0                              6
  YES                       60                             96
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 33(20P12.1) CNV       45  1  7  1
  DEL PEAK 33(20P12.1) WILD-TYPE 76  1  5  2
D58V10, multiclass
    clus
vv   DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  R0                       45                             76
  R1                        1                              1
  R2                        7                              5
  RX                        1                              2
D58V11, continuous

Clustering(59) Variable = Del Peak 34(20p12.1)
D59V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 34(20P12.1) CNV       38  7
  DEL PEAK 34(20P12.1) WILD-TYPE 76  4
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                            45                             80 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                             7                              4 
$`DEL PEAK 34(20P12.1) CNV`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3726 
       15.85        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A008 
        0.95         0.99         1.02         1.02         0.99        13.91 
TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
       15.91         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AH-6547 TCGA-AH-6643 TCGA-CI-6624 TCGA-CL-5917 
        1.94        38.93         1.45         0.69         4.70        60.00 
TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 
       10.98         8.98         6.97        19.99         3.98         5.00 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6511 
       41.33        57.24        24.13        32.58         2.40         3.98 
TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7004 TCGA-F5-6571 
        0.66         6.15         3.98         2.73         2.04         0.85 
TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
        2.17         0.46        20.91 

$`DEL PEAK 34(20P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         1.02         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C 
        0.99         0.99         1.02         1.02        20.94         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 
       25.94        23.01        17.03        13.02         1.02        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98        49.94        61.94        40.96        38.01         0.49 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.72         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 
        6.94         9.37        13.97         7.99        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DT-5265 
        5.03         7.36         6.97        27.91         5.92         0.26 
TCGA-DY-A0XA TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 
      119.51       121.08        51.48         0.49         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 
        2.17         8.22         0.46         6.90         7.10         3.55 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6811 
        5.23         7.79         2.76         3.39         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 
        0.66         0.69         0.53         1.08         0.76        18.25 
TCGA-G5-6235 TCGA-G5-6572 
       47.70        47.08 

      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                         3.980                          7.035 
[1] "0.5 - 70.0 (4.0)"  "0.2 - 121.1 (7.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3727                     TCGA-AG-3731 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6547                     TCGA-AH-6643 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 34(20P12.1) CNV" 
[1] "hr=" "2.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) CNV         31   29
  DEL PEAK 34(20P12.1) WILD-TYPE   43   59
        clus
vv       DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  FEMALE                       31                             43
  MALE                         29                             59
D59V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) CNV         55    5
  DEL PEAK 34(20P12.1) WILD-TYPE   88    8
                                clus
vv                               DEL PEAK 34(20P12.1) CNV
  RECTAL ADENOCARCINOMA                                55
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               DEL PEAK 34(20P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      88
  RECTAL MUCINOUS ADENOCARCINOMA                              8
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 34(20P12.1) CNV        2 11 42  5
  DEL PEAK 34(20P12.1) WILD-TYPE  7 18 67  9
D59V5, multiclass
    clus
vv   DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  T1                        2                              7
  T2                       11                             18
  T3                       42                             67
  T4                        5                              9
                                vv
clus                             N0 N1 N2
  DEL PEAK 34(20P12.1) CNV       30 17 13
  DEL PEAK 34(20P12.1) WILD-TYPE 53 28 19
D59V6, multiclass
    clus
vv   DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  N0                       30                             53
  N1                       17                             28
  N2                       13                             19
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 34(20P12.1) CNV       47 10   0  3
  DEL PEAK 34(20P12.1) WILD-TYPE 76 12   2 10
D59V7, multiclass
     clus
vv    DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  M0                        47                             76
  M1                        10                             12
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                              I II III IV
  DEL PEAK 34(20P12.1) CNV        9 19  20  9
  DEL PEAK 34(20P12.1) WILD-TYPE 21 31  30 16
D59V8, multiclass
     clus
vv    DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  I                          9                             21
  II                        19                             31
  III                       20                             30
  IV                         9                             16
D59V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) CNV          0   60
  DEL PEAK 34(20P12.1) WILD-TYPE    6   96
     clus
vv    DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  NO                         0                              6
  YES                       60                             96
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 34(20P12.1) CNV       45  1  7  1
  DEL PEAK 34(20P12.1) WILD-TYPE 76  1  5  2
D59V10, multiclass
    clus
vv   DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  R0                       45                             76
  R1                        1                              1
  R2                        7                              5
  RX                        1                              2
D59V11, continuous

Clustering(60) Variable = Del Peak 35(21q11.2)
D60V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 35(21Q11.2) CNV       49  6
  DEL PEAK 35(21Q11.2) WILD-TYPE 65  5
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                            55                             70 
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                             6                              5 
$`DEL PEAK 35(21Q11.2) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 
       19.53        15.85        11.77        19.10        14.50         7.59 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3599 
        6.35         7.33         1.02         1.02         1.02         0.99 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6544 
       10.98         1.94        38.93        61.94        40.96         0.49 
TCGA-AH-6643 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-6155 TCGA-DC-6157 
        0.69         4.70        13.97        10.98         7.36        27.91 
TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DG 
        6.97         3.98         5.00       119.51        57.24        51.48 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6511 
       32.58         0.49         2.40         7.63         2.17         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 
        0.66         6.90         6.15         2.76         2.04         0.85 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6863 TCGA-G5-6233 
        0.39         1.02         0.66         0.53         0.76        18.25 
TCGA-G5-6641 
       20.91 

$`DEL PEAK 35(21Q11.2) WILD-TYPE`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 
       10.62        13.55        12.72        17.62        10.39         8.45 
TCGA-AG-3583 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        2.01         1.02         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A023 
       17.03        15.91        13.02         1.02         1.02        51.98 
TCGA-AG-A025 TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       49.94        38.01         1.45         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 
       10.19         6.02         6.02         6.94         9.37        60.00 
TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 
        7.99        11.01         9.99         5.03         8.98         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DF 
       19.99         5.92         0.26        41.33       121.08        24.13 
TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 
        0.16         8.22         0.46         7.10         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6813 
        2.73         5.23         7.79         3.39         2.17         0.69 
TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.46        47.70        47.08 

      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                        119.51                         121.08 
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                          6.90                           6.02 
[1] "0.4 - 119.5 (6.9)" "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3581                     TCGA-AG-3582 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3726 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-4007                     TCGA-AG-4008 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6624                     TCGA-CL-4957 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-CL-5917                     TCGA-CL-5918 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6158                     TCGA-DC-6160 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6683                     TCGA-DT-5265 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EF-5831                     TCGA-EI-6506 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6513                     TCGA-EI-6514 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6465                     TCGA-F5-6571 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6641 
      "DEL PEAK 35(21Q11.2) CNV" 
[1] "hr=" "1"  
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) CNV         30   40
  DEL PEAK 35(21Q11.2) WILD-TYPE   44   48
        clus
vv       DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  FEMALE                       30                             44
  MALE                         40                             48
D60V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) CNV         63    3
  DEL PEAK 35(21Q11.2) WILD-TYPE   80   10
                                clus
vv                               DEL PEAK 35(21Q11.2) CNV
  RECTAL ADENOCARCINOMA                                63
  RECTAL MUCINOUS ADENOCARCINOMA                        3
                                clus
vv                               DEL PEAK 35(21Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      80
  RECTAL MUCINOUS ADENOCARCINOMA                             10
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 35(21Q11.2) CNV        1 16 47  6
  DEL PEAK 35(21Q11.2) WILD-TYPE  8 13 62  8
D60V5, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  T1                        1                              8
  T2                       16                             13
  T3                       47                             62
  T4                        6                              8
                                vv
clus                             N0 N1 N2
  DEL PEAK 35(21Q11.2) CNV       33 24 13
  DEL PEAK 35(21Q11.2) WILD-TYPE 50 21 19
D60V6, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  N0                       33                             50
  N1                       24                             21
  N2                       13                             19
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 35(21Q11.2) CNV       55  9   0  6
  DEL PEAK 35(21Q11.2) WILD-TYPE 68 13   2  7
D60V7, multiclass
     clus
vv    DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  M0                        55                             68
  M1                         9                             13
  M1A                        0                              2
  MX                         6                              7
                                vv
clus                              I II III IV
  DEL PEAK 35(21Q11.2) CNV       10 23  24 10
  DEL PEAK 35(21Q11.2) WILD-TYPE 20 27  26 15
D60V8, multiclass
     clus
vv    DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  I                         10                             20
  II                        23                             27
  III                       24                             26
  IV                        10                             15
D60V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) CNV          3   67
  DEL PEAK 35(21Q11.2) WILD-TYPE    3   89
     clus
vv    DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  NO                         3                              3
  YES                       67                             89
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 35(21Q11.2) CNV       52  1  4  0
  DEL PEAK 35(21Q11.2) WILD-TYPE 69  1  8  3
D60V10, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  R0                       52                             69
  R1                        1                              1
  R2                        4                              8
  RX                        0                              3
D60V11, continuous

Clustering(61) Variable = Del Peak 36(22q13.31)
D61V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 36(22Q13.31) CNV       42  6
  DEL PEAK 36(22Q13.31) WILD-TYPE 72  5
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                             48                              77 
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                              6                               5 
$`DEL PEAK 36(22Q13.31) CNV`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3581 
       13.55        19.10        14.50         7.59         7.33         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H 
        1.02         2.01         1.02         1.02         1.02        25.94 
TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       23.01        12.00        10.98         1.94        38.93        40.96 
TCGA-AH-6544 TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6624 TCGA-CL-4957 
        0.49         0.72        10.19         6.02         4.70        13.97 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6158 TCGA-DC-6160 
       10.98        11.01         5.03         7.36         6.97        19.99 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 
        3.98         5.00        41.33       121.08        51.48        32.58 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-7002 
        2.40         7.63         2.17         0.66         6.15         2.76 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6641 
        2.17         0.39         0.66         0.76        18.25        20.91 

$`DEL PEAK 36(22Q13.31) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        12.72        17.62 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
       10.39         8.45         6.35         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.95         0.99         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
        6.02        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N 
       12.00        70.03        63.98        51.98        49.94        61.94 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 
       38.01         1.45         0.69         4.60         1.81         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-5337 TCGA-DC-6154 
        6.94         9.37        60.00         7.99         9.99         8.98 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DD 
        6.97        27.91         5.92         0.26       119.51        57.24 
TCGA-DY-A1DF TCGA-EF-5830 TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
       24.13         0.49         0.16         8.22         0.46         3.98 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        6.90         7.10         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6811 TCGA-F5-6813 
        7.79         2.04         3.39         0.85         1.02         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.46        47.70        47.08 

      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                           0.39                            0.16 
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                         121.08                          119.51 
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                           7.15                            6.02 
[1] "0.4 - 121.1 (7.2)" "0.2 - 119.5 (6.0)"
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6641 
      "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6641 
      "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3581                      TCGA-AG-3582 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3583                      TCGA-AG-3587 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3726 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3727                      TCGA-AG-3731 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3742                      TCGA-AG-3878 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3999                      TCGA-AG-4001 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-4007                      TCGA-AG-4008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4022                      TCGA-AG-A002 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A008                      TCGA-AG-A00C 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00H                      TCGA-AG-A00Y 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A011                      TCGA-AG-A014 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A015                      TCGA-AG-A016 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01J                      TCGA-AG-A01L 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A01N                      TCGA-AG-A01W 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01Y                      TCGA-AG-A020 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A023                      TCGA-AG-A025 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A026                      TCGA-AG-A02G 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A02N                      TCGA-AG-A02X 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A032                      TCGA-AH-6544 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AH-6547                      TCGA-AH-6643 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6644                      TCGA-AH-6897 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6903                      TCGA-BM-6198 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CI-6619                      TCGA-CI-6620 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6622                      TCGA-CI-6623 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6624                      TCGA-CL-4957 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CL-5917                      TCGA-CL-5918 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-4745                      TCGA-DC-4749 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-5337                      TCGA-DC-5869 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6154                      TCGA-DC-6155 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6156                      TCGA-DC-6157 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6158                      TCGA-DC-6160 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6681                      TCGA-DC-6682 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6683                      TCGA-DT-5265 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A0XA                      TCGA-DY-A1DC 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1DD                      TCGA-DY-A1DE 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1DF                      TCGA-DY-A1DG 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DY-A1H8                      TCGA-EF-5830 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EF-5831                      TCGA-EI-6506 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6507                      TCGA-EI-6508 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6509                      TCGA-EI-6510 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6511                      TCGA-EI-6512 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6513                      TCGA-EI-6514 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6881                      TCGA-EI-6882 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6883                      TCGA-EI-6884 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6885                      TCGA-EI-6917 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-7002                      TCGA-EI-7004 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6465                      TCGA-F5-6571 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6702                      TCGA-F5-6810 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6811                      TCGA-F5-6812 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6813                      TCGA-F5-6814 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6861                      TCGA-F5-6863 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6864                      TCGA-G5-6233 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-G5-6235                      TCGA-G5-6572 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6641 
      "DEL PEAK 36(22Q13.31) CNV" 
[1] "hr=" "3.2"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) CNV         27   39
  DEL PEAK 36(22Q13.31) WILD-TYPE   47   49
        clus
vv       DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  FEMALE                        27                              47
  MALE                          39                              49
D61V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) CNV         59    4
  DEL PEAK 36(22Q13.31) WILD-TYPE   84    9
                                clus
vv                               DEL PEAK 36(22Q13.31) CNV
  RECTAL ADENOCARCINOMA                                 59
  RECTAL MUCINOUS ADENOCARCINOMA                         4
                                clus
vv                               DEL PEAK 36(22Q13.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       84
  RECTAL MUCINOUS ADENOCARCINOMA                               9
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 36(22Q13.31) CNV        1 12 48  5
  DEL PEAK 36(22Q13.31) WILD-TYPE  8 17 61  9
D61V5, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  T1                         1                               8
  T2                        12                              17
  T3                        48                              61
  T4                         5                               9
                                 vv
clus                              N0 N1 N2
  DEL PEAK 36(22Q13.31) CNV       27 27 11
  DEL PEAK 36(22Q13.31) WILD-TYPE 56 18 21
D61V6, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  N0                        27                              56
  N1                        27                              18
  N2                        11                              21
                                 vv
clus                              M0 M1 M1A MX
  DEL PEAK 36(22Q13.31) CNV       46 12   0  7
  DEL PEAK 36(22Q13.31) WILD-TYPE 77 10   2  6
D61V7, multiclass
     clus
vv    DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  M0                         46                              77
  M1                         12                              10
  M1A                         0                               2
  MX                          7                               6
                                 vv
clus                               I II III IV
  DEL PEAK 36(22Q13.31) CNV        9 19  23 13
  DEL PEAK 36(22Q13.31) WILD-TYPE 21 31  27 12
D61V8, multiclass
     clus
vv    DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  I                           9                              21
  II                         19                              31
  III                        23                              27
  IV                         13                              12
D61V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) CNV          3   63
  DEL PEAK 36(22Q13.31) WILD-TYPE    3   93
     clus
vv    DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  NO                          3                               3
  YES                        63                              93
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 36(22Q13.31) CNV       45  1  7  0
  DEL PEAK 36(22Q13.31) WILD-TYPE 76  1  5  3
D61V10, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  R0                        45                              76
  R1                         1                               1
  R2                         7                               5
  RX                         0                               3
D61V11, continuous

Clustering(62) Variable = Del Peak 37(Xp22.33)
D62V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 37(XP22.33) CNV       21  2
  DEL PEAK 37(XP22.33) WILD-TYPE 93  9
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                            23                            102 
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                             2                              9 
$`DEL PEAK 37(XP22.33) CNV`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AG-3893 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A00C 
       13.55        19.10         0.99         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6544 TCGA-BM-6198 TCGA-CI-6623 
       25.94        38.93        40.96         0.49        10.19         9.37 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6160 TCGA-DY-A1DE 
       60.00        10.98         7.36         6.97        19.99       121.08 
TCGA-DY-A1H8 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
       32.58         2.76         3.39         0.85         0.39 

$`DEL PEAK 37(XP22.33) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        12.72        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.95         1.02         0.99         0.99         0.92         1.02 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       23.01        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 
       49.94         1.94        61.94        38.01         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        0.72         4.60         1.81         6.02         6.02         6.94 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
        4.70        13.97         7.99        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
        8.98        27.91         6.97         5.92         3.98         5.00 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG 
        0.26       119.51        41.33        57.24        24.13        51.48 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
        0.49         2.40         7.63         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
        0.46         3.98         0.66         6.90         7.10         6.15 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 
        3.55         3.98         2.73         5.23         7.79         2.04 
TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        2.17         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        47.70        47.08        20.91 

      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                         10.19                           5.97 
[1] "0.4 - 121.1 (10.2)" "0.2 - 119.5 (6.0)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3581                     TCGA-AG-3582 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3583                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3726 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3727                     TCGA-AG-3731 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3742                     TCGA-AG-3878 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3999                     TCGA-AG-4001 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4007                     TCGA-AG-4008 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4022                     TCGA-AG-A002 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A008                     TCGA-AG-A00C 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00H                     TCGA-AG-A00Y 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A011                     TCGA-AG-A014 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A015                     TCGA-AG-A016 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01J                     TCGA-AG-A01L 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01N                     TCGA-AG-A01W 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01Y                     TCGA-AG-A020 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A023                     TCGA-AG-A025 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A026                     TCGA-AG-A02G 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A02N                     TCGA-AG-A02X 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A032                     TCGA-AH-6544 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AH-6547                     TCGA-AH-6643 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6644                     TCGA-AH-6897 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6903                     TCGA-BM-6198 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CI-6619                     TCGA-CI-6620 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6622                     TCGA-CI-6623 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CI-6624                     TCGA-CL-4957 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-5917                     TCGA-CL-5918 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-4745                     TCGA-DC-4749 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5337                     TCGA-DC-5869 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6154                     TCGA-DC-6155 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6156                     TCGA-DC-6157 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6158                     TCGA-DC-6160 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6681                     TCGA-DC-6682 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6683                     TCGA-DT-5265 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A0XA                     TCGA-DY-A1DC 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DD                     TCGA-DY-A1DE 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DY-A1DF                     TCGA-DY-A1DG 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1H8                     TCGA-EF-5830 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EF-5831                     TCGA-EI-6506 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6507                     TCGA-EI-6508 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6509                     TCGA-EI-6510 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6511                     TCGA-EI-6512 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6513                     TCGA-EI-6514 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6881                     TCGA-EI-6882 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6883                     TCGA-EI-6884 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6885                     TCGA-EI-6917 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-7002                     TCGA-EI-7004 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6465                     TCGA-F5-6571 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6702                     TCGA-F5-6810 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6811                     TCGA-F5-6812 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6813                     TCGA-F5-6814 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6861                     TCGA-F5-6863 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6864                     TCGA-G5-6233 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6235                     TCGA-G5-6572 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" 
[1] "hr=" "1.5"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) CNV         16   17
  DEL PEAK 37(XP22.33) WILD-TYPE   58   71
        clus
vv       DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  FEMALE                       16                             58
  MALE                         17                             71
D62V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) CNV         27    3
  DEL PEAK 37(XP22.33) WILD-TYPE  116   10
                                clus
vv                               DEL PEAK 37(XP22.33) CNV
  RECTAL ADENOCARCINOMA                                27
  RECTAL MUCINOUS ADENOCARCINOMA                        3
                                clus
vv                               DEL PEAK 37(XP22.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     116
  RECTAL MUCINOUS ADENOCARCINOMA                             10
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 37(XP22.33) CNV        1  8 22  2
  DEL PEAK 37(XP22.33) WILD-TYPE  8 21 87 12
D62V5, multiclass
    clus
vv   DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  T1                        1                              8
  T2                        8                             21
  T3                       22                             87
  T4                        2                             12
                                vv
clus                             N0 N1 N2
  DEL PEAK 37(XP22.33) CNV       18  8  7
  DEL PEAK 37(XP22.33) WILD-TYPE 65 37 25
D62V6, multiclass
    clus
vv   DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  N0                       18                             65
  N1                        8                             37
  N2                        7                             25
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 37(XP22.33) CNV       24  5   1  2
  DEL PEAK 37(XP22.33) WILD-TYPE 99 17   1 11
D62V7, multiclass
     clus
vv    DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  M0                        24                             99
  M1                         5                             17
  M1A                        1                              1
  MX                         2                             11
                                vv
clus                              I II III IV
  DEL PEAK 37(XP22.33) CNV        6 12   9  5
  DEL PEAK 37(XP22.33) WILD-TYPE 24 38  41 20
D62V8, multiclass
     clus
vv    DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  I                          6                             24
  II                        12                             38
  III                        9                             41
  IV                         5                             20
D62V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) CNV          1   32
  DEL PEAK 37(XP22.33) WILD-TYPE    5  124
     clus
vv    DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  NO                         1                              5
  YES                       32                            124
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 37(XP22.33) CNV       23  0  3  1
  DEL PEAK 37(XP22.33) WILD-TYPE 98  2  9  2
D62V10, multiclass
    clus
vv   DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  R0                       23                             98
  R1                        0                              2
  R2                        3                              9
  RX                        1                              2
D62V11, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
                           "PATHOLOGY.T" 
                                      V6 
                           "PATHOLOGY.N" 
                                      V7 
                   "PATHOLOGICSPREAD(M)" 
                                      V8 
                           "TUMOR.STAGE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V10 
             "COMPLETENESS.OF.RESECTION" 
                                     V11 
                 "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
