		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	0 (0%)	114	1	1	0.88206	1	0.00067608	0.401	0.96087	1	0.53079	1	0.17967	1	0.77566	1	0.01376	1	0.080473	1	0.6456	1
Amp Peak  2(1q32.2)	0 (0%)	114	0.68588	1	1	1	0.0091792	1	0.57906	1	0.18541	1	0.05346	1	0.91207	1	0.066687	1	0.10974	1	0.38951	1
Amp Peak  3(5q22.3)	0 (0%)	143	0.03046	1	0.44644	1	0.11811	1	0.28086	1	0.15943	1	0.44546	1	0.073772	1	0.21508	1	0.48523	1	0.6501	1
Amp Peak  4(6p21.1)	0 (0%)	110	0.03683	1	0.035711	1	0.0001122	0.0675	0.039744	1	0.91209	1	0.10028	1	0.73756	1	0.74663	1	0.16273	1	0.4132	1
Amp Peak  5(8p11.23)	0 (0%)	110	0.0018119	1	0.037719	1	2.5362e-08	1.55e-05	0.3084	1	0.37604	1	0.37587	1	0.66166	1	0.82329	1	0.056811	1	0.006683	1
Amp Peak  6(8p11.21)	0 (0%)	93	0.01029	1	0.020317	1	2.3766e-13	1.46e-10	0.25707	1	0.37063	1	0.49954	1	0.37725	1	0.93513	1	0.17278	1	0.084031	1
Amp Peak  7(8q24.21)	0 (0%)	55	0.030544	1	0.021382	1	1.6962e-09	1.04e-06	0.2315	1	0.6293	1	0.59046	1	0.44408	1	0.62717	1	0.56639	1	0.1442	1
Amp Peak  8(10q22.2)	0 (0%)	151	0.4254	1	0.87205	1	0.91222	1	1	1	1	1	0.69385	1	NA	NA	NA	NA	0.38713	1	0.28022	1
Amp Peak  9(11p15.5)	0 (0%)	119	0.41766	1	0.46815	1	0.02861	1	0.69599	1	0.6968	1	0.69589	1	0.0083486	1	0.0029467	1	0.090226	1	0.47006	1
Amp Peak 10(11q13.3)	0 (0%)	136	0.031197	1	0.053576	1	0.00056834	0.338	0.0078889	1	0.90643	1	0.86129	1	0.10531	1	0.66961	1	0.015119	1	0.13584	1
Amp Peak 11(12p13.33)	0 (0%)	121	0.47546	1	0.56647	1	0.038474	1	0.65368	1	0.11336	1	0.055766	1	0.45197	1	0.24127	1	0.59317	1	0.83975	1
Amp Peak 12(12p12.1)	0 (0%)	122	0.51098	1	0.78648	1	0.036007	1	0.44569	1	0.050265	1	0.027297	1	0.60471	1	0.19729	1	0.68075	1	0.42012	1
Amp Peak 13(13q12.13)	0 (0%)	41	0.57316	1	0.57507	1	3.0576e-05	0.0185	0.31669	1	0.42395	1	0.42668	1	0.011789	1	0.24069	1	0.012234	1	0.0084705	1
Amp Peak 14(13q12.2)	0 (0%)	42	0.42638	1	0.42096	1	4.8631e-06	0.00296	0.23963	1	0.73573	1	0.54848	1	0.032516	1	0.42338	1	0.073716	1	0.022669	1
Amp Peak 15(13q22.1)	0 (0%)	45	0.40588	1	0.22349	1	1.0215e-07	6.23e-05	0.051336	1	0.90663	1	0.13971	1	0.37232	1	0.41792	1	0.0071233	1	0.0030409	1
Amp Peak 16(15q26.1)	0 (0%)	147	0.15108	1	0.11953	1	0.3144	1	0.44097	1	0.10096	1	0.24402	1	0.18879	1	0.21508	1	0.50321	1	0.91887	1
Amp Peak 17(16p11.2)	0 (0%)	117	0.14808	1	0.071927	1	2.957e-05	0.0179	0.13983	1	0.30027	1	0.30573	1	0.38762	1	0.78928	1	0.17842	1	0.81575	1
Amp Peak 18(17q12)	0 (0%)	119	0.0055906	1	0.14599	1	0.00020043	0.12	0.53237	1	0.17627	1	0.89536	1	0.35616	1	0.14626	1	0.17128	1	0.89783	1
Amp Peak 19(17q24.1)	0 (0%)	125	0.21419	1	0.94276	1	0.0003305	0.198	0.1241	1	0.60834	1	0.62978	1	0.56855	1	0.2359	1	0.59889	1	0.66794	1
Amp Peak 20(19p13.2)	0 (0%)	130	0.044765	1	0.0088532	1	0.00059945	0.356	0.79833	1	0.38942	1	0.25859	1	0.15321	1	0.53132	1	0.64297	1	0.91553	1
Amp Peak 21(20q11.21)	0 (0%)	19	0.063237	1	0.029395	1	0.0011551	0.683	0.023665	1	0.19393	1	0.076606	1	0.55197	1	0.2711	1	0.028261	1	0.091641	1
Amp Peak 22(20q11.23)	0 (0%)	18	0.063237	1	0.029395	1	0.0025676	1	0.056143	1	0.19393	1	0.076606	1	0.55197	1	0.2711	1	0.050441	1	0.069719	1
Amp Peak 23(20q13.31)	0 (0%)	17	0.050688	1	0.026909	1	0.0054418	1	0.056143	1	0.19393	1	0.076606	1	0.55197	1	0.2711	1	0.072829	1	0.10856	1
Amp Peak 24(Xp22.2)	0 (0%)	129	0.037896	1	0.10931	1	0.64385	1	0.50541	1	0.79486	1	0.65986	1	0.99131	1	1	1	0.77535	1	0.95503	1
Amp Peak 25(Xq27.3)	0 (0%)	124	0.14874	1	0.45823	1	0.025243	1	0.072221	1	0.58622	1	0.182	1	0.25226	1	0.70188	1	0.56022	1	0.44199	1
Del Peak  1(1p36.11)	0 (0%)	91	0.45041	1	0.30069	1	0.42909	1	0.25589	1	0.80307	1	0.80129	1	0.56893	1	1	1	0.46685	1	0.75544	1
Del Peak  2(1p33)	0 (0%)	113	0.78985	1	0.23877	1	0.0019569	1	0.21694	1	0.8802	1	0.24652	1	0.66084	1	1	1	0.36878	1	0.18664	1
Del Peak  3(1p13.2)	0 (0%)	111	0.74028	1	0.48348	1	0.00017777	0.107	0.63136	1	0.54399	1	0.73917	1	0.1805	1	0.49979	1	0.40427	1	0.10357	1
Del Peak  4(2p12)	0 (0%)	145	0.29521	1	0.32057	1	0.062324	1	0.40862	1	0.34371	1	0.17064	1	0.65501	1	1	1	0.37004	1	0.62042	1
Del Peak  5(3p14.2)	0 (0%)	133	0.59065	1	0.79609	1	0.60562	1	1	1	0.21748	1	0.69444	1	0.2683	1	0.31862	1	0.83154	1	1	1
Del Peak  6(3q26.31)	0 (0%)	145	1	1	0.9087	1	0.60366	1	1	1	0.74646	1	0.70317	1	0.24215	1	1	1	0.098052	1	0.93302	1
Del Peak  7(4p13)	0 (0%)	104	0.85959	1	0.6641	1	0.00089499	0.53	0.083728	1	0.78722	1	0.31314	1	0.50256	1	0.29255	1	0.97511	1	0.06163	1
Del Peak  8(4q22.1)	0 (0%)	90	0.82493	1	0.43603	1	9.6487e-05	0.0582	0.29666	1	0.70221	1	0.71142	1	0.024565	1	0.055589	1	0.91702	1	0.081595	1
Del Peak  9(4q35.1)	0 (0%)	90	0.4282	1	0.60683	1	0.0005371	0.32	0.13459	1	0.50566	1	0.68762	1	0.45231	1	0.038005	1	0.43129	1	0.036917	1
Del Peak 10(5q11.2)	0 (0%)	113	0.20498	1	0.082547	1	0.10232	1	0.0021355	1	0.94014	1	0.24027	1	0.11674	1	0.93039	1	0.45773	1	0.037837	1
Del Peak 11(5q22.2)	0 (0%)	107	0.36995	1	0.16486	1	0.084382	1	0.3084	1	0.68363	1	0.98735	1	0.468	1	0.67475	1	0.65959	1	0.1914	1
Del Peak 12(6p25.3)	0 (0%)	138	1	1	1	1	0.6483	1	0.022219	1	0.65447	1	0.98801	1	0.68001	1	0.55372	1	0.69002	1	0.56801	1
Del Peak 13(6q26)	0 (0%)	132	0.19905	1	0.058369	1	0.15883	1	0.67919	1	0.099334	1	0.34296	1	0.89011	1	0.64772	1	0.077132	1	0.064496	1
Del Peak 14(7q31.1)	0 (0%)	158	NA	NA	NA	NA	0.31082	1	NA	NA	1	1	0.45888	1	NA	NA	NA	NA	0.74868	1	1	1
Del Peak 15(8p23.2)	0 (0%)	62	0.13619	1	0.092848	1	6.4006e-06	0.00388	0.27339	1	1	1	0.58239	1	0.028941	1	0.23037	1	0.64291	1	0.86294	1
Del Peak 16(8p11.21)	0 (0%)	138	0.1747	1	0.42199	1	0.13977	1	0.20359	1	0.11167	1	0.56022	1	0.40796	1	0.42343	1	0.07528	1	0.11678	1
Del Peak 17(10q21.1)	0 (0%)	125	0.16699	1	0.27248	1	0.071628	1	0.43152	1	0.059525	1	0.023689	1	0.1832	1	0.61953	1	0.74738	1	0.89178	1
Del Peak 18(10q25.2)	0 (0%)	115	0.50802	1	0.84287	1	0.80633	1	0.59634	1	0.4555	1	0.20327	1	0.12902	1	0.92805	1	0.70326	1	0.74207	1
Del Peak 19(11q22.3)	0 (0%)	125	0.0014303	0.844	0.010346	1	0.001497	0.882	0.039195	1	0.82573	1	0.055675	1	0.019827	1	0.00048902	0.292	0.4437	1	0.6167	1
Del Peak 20(12p13.1)	0 (0%)	129	1	1	0.65544	1	0.65679	1	0.28534	1	0.53485	1	0.31093	1	0.39086	1	0.0066599	1	0.28732	1	0.22381	1
Del Peak 21(12q21.33)	0 (0%)	134	0.72447	1	0.92316	1	0.020619	1	0.69449	1	0.60629	1	0.77513	1	0.38314	1	0.042172	1	0.46703	1	0.24691	1
Del Peak 22(14q11.2)	0 (0%)	95	0.90674	1	0.33501	1	0.0034551	1	0.9308	1	0.80307	1	0.88786	1	0.39515	1	0.39026	1	0.085815	1	0.14089	1
Del Peak 23(14q31.1)	0 (0%)	93	0.90674	1	0.37254	1	0.011517	1	1	1	0.63308	1	0.31637	1	0.26127	1	0.44245	1	0.16147	1	0.19973	1
Del Peak 24(15q22.33)	0 (0%)	87	0.62397	1	0.42081	1	0.000218	0.131	0.69785	1	0.19355	1	0.21454	1	0.25979	1	0.50982	1	0.38355	1	0.77689	1
Del Peak 25(16p13.3)	0 (0%)	149	0.78128	1	0.60877	1	0.5352	1	0.0203	1	0.72489	1	0.66699	1	0.74652	1	1	1	0.23706	1	0.31657	1
Del Peak 26(16q23.1)	0 (0%)	139	0.10553	1	0.10227	1	0.087296	1	0.13473	1	0.58873	1	0.7112	1	0.44041	1	1	1	0.61937	1	0.1031	1
Del Peak 27(17p12)	0 (0%)	52	0.11937	1	0.35566	1	0.029947	1	0.32872	1	0.5205	1	0.75599	1	0.20569	1	0.031426	1	0.86955	1	0.4458	1
Del Peak 28(17p11.2)	0 (0%)	60	0.23734	1	0.55961	1	0.049408	1	0.59307	1	0.91881	1	0.37914	1	0.058227	1	0.069566	1	0.99854	1	0.9146	1
Del Peak 29(17q25.3)	0 (0%)	138	0.60749	1	0.5361	1	0.19208	1	0.0055794	1	0.45669	1	0.17116	1	0.048254	1	0.014985	1	0.35237	1	0.15531	1
Del Peak 30(18q21.2)	0 (0%)	19	0.13555	1	0.094774	1	5.1796e-06	0.00314	0.11257	1	1	1	0.57316	1	0.12027	1	0.42343	1	0.43297	1	0.23061	1
Del Peak 31(18q22.1)	0 (0%)	24	0.069683	1	0.049017	1	2.382e-07	0.000145	0.030939	1	0.77648	1	0.48393	1	0.0053782	1	0.47536	1	0.80517	1	0.49327	1
Del Peak 32(19p13.3)	0 (0%)	124	0.2121	1	0.63651	1	0.067096	1	0.046983	1	0.89267	1	0.95762	1	0.40872	1	0.019103	1	0.49243	1	0.012546	1
Del Peak 33(20p12.1)	0 (0%)	102	0.59134	1	0.90865	1	0.036074	1	0.78748	1	0.53976	1	0.28001	1	0.23266	1	0.93039	1	0.04741	1	0.23436	1
Del Peak 34(20p12.1)	0 (0%)	102	0.59134	1	0.90865	1	0.036074	1	0.78748	1	0.53976	1	0.28001	1	0.23266	1	0.93039	1	0.04741	1	0.23436	1
Del Peak 35(21q11.2)	0 (0%)	92	0.41406	1	0.30174	1	0.30436	1	0.83715	1	0.92386	1	0.40997	1	0.55027	1	0.93744	1	0.052038	1	0.46549	1
Del Peak 36(22q13.31)	0 (0%)	96	1	1	0.86224	1	0.22235	1	0.83466	1	0.53236	1	0.46181	1	0.26396	1	0.19409	1	0.0061925	1	0.33691	1
Del Peak 37(Xp22.33)	0 (0%)	129	0.93804	1	0.82755	1	0.26577	1	0.0027507	1	0.72435	1	0.80143	1	0.90994	1	1	1	0.64257	1	0.81867	1
