
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/410852/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD-TP/3132759/1.GDAC_clinicalDataPicker.Finished/STAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=STAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=STAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=181, in cluster file=306, common to both=180
[1]  75 180
[1] "Amp Peak  1(1p36.22)"
[1] 3
      AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE 
                            26                            154 
      AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE 
                            26                            154 
[1] "Amp Peak  2(1q21.3)"
[1] 3
      AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE 
                           60                           120 
      AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE 
                           60                           120 
[1] "Amp Peak  3(1q42.3)"
[1] 3
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           61                           119 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           61                           119 
[1] "Amp Peak  4(3q27.1)"
[1] 3
      AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE 
                           58                           122 
      AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE 
                           58                           122 
[1] "Amp Peak  5(5p13.1)"
[1] 3
      AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE 
                           54                           126 
      AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE 
                           54                           126 
[1] "Amp Peak  6(6p21.1)"
[1] 3
      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                           53                           127 
      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                           53                           127 
[1] "Amp Peak  7(6q12)"
[1] 3
      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                         40                         140 
      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                         40                         140 
[1] "Amp Peak  8(6q21)"
[1] 3
      AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE 
                         33                         147 
      AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE 
                         33                         147 
[1] "Amp Peak  9(7p22.3)"
[1] 3
      AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE 
                           92                            88 
      AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE 
                           92                            88 
[1] "Amp Peak 10(7p11.2)"
[1] 3
      AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE 
                           85                            95 
      AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE 
                           85                            95 
[1] "Amp Peak 11(7q21.2)"
[1] 3
      AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE 
                           86                            94 
      AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE 
                           86                            94 
[1] "Amp Peak 12(8p23.1)"
[1] 3
      AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE 
                           70                           110 
      AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE 
                           70                           110 
[1] "Amp Peak 13(8q24.21)"
[1] 3
      AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE 
                           124                             56 
      AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE 
                           124                             56 
[1] "Amp Peak 14(9p24.1)"
[1] 3
      AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE 
                           30                           150 
      AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE 
                           30                           150 
[1] "Amp Peak 15(9q34.3)"
[1] 3
      AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE 
                           46                           134 
      AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE 
                           46                           134 
[1] "Amp Peak 16(10q22.2)"
[1] 3
      AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE 
                            34                            146 
      AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE 
                            34                            146 
[1] "Amp Peak 17(10q26.13)"
[1] 3
      AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE 
                             43                             137 
      AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE 
                             43                             137 
[1] "Amp Peak 18(11p13)"
[1] 3
      AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE 
                          35                          145 
      AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE 
                          35                          145 
[1] "Amp Peak 19(11q13.3)"
[1] 3
      AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE 
                            37                            143 
      AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE 
                            37                            143 
[1] "Amp Peak 20(12p12.1)"
[1] 3
      AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE 
                            44                            136 
      AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE 
                            44                            136 
[1] "Amp Peak 21(12q15)"
[1] 3
      AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE 
                          44                          136 
      AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE 
                          44                          136 
[1] "Amp Peak 22(13q12.3)"
[1] 3
      AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE 
                            71                            109 
      AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE 
                            71                            109 
[1] "Amp Peak 23(13q22.1)"
[1] 3
      AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE 
                            77                            103 
      AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE 
                            77                            103 
[1] "Amp Peak 24(15q26.1)"
[1] 3
      AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE 
                            46                            134 
      AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE 
                            46                            134 
[1] "Amp Peak 25(17q12)"
[1] 3
      AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE 
                          56                          124 
      AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE 
                          56                          124 
[1] "Amp Peak 26(18q11.2)"
[1] 3
      AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE 
                            57                            123 
      AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE 
                            57                            123 
[1] "Amp Peak 27(19q12)"
[1] 3
      AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE 
                          54                          126 
      AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE 
                          54                          126 
[1] "Amp Peak 28(20q13.2)"
[1] 3
      AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE 
                           121                             59 
      AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE 
                           121                             59 
[1] "Amp Peak 29(Xq27.3)"
[1] 3
      AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE 
                           37                           143 
      AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE 
                           37                           143 
[1] "Del Peak  1(1p36.11)"
[1] 3
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            46                            134 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            46                            134 
[1] "Del Peak  2(1p13.2)"
[1] 3
      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                           34                           146 
      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                           34                           146 
[1] "Del Peak  3(1q44)"
[1] 3
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                         12                         168 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                         12                         168 
[1] "Del Peak  4(2q32.1)"
[1] 3
      DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE 
                           21                           159 
      DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE 
                           21                           159 
[1] "Del Peak  5(2q37.2)"
[1] 3
      DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE 
                           25                           155 
      DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE 
                           25                           155 
[1] "Del Peak  6(3p26.1)"
[1] 3
      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                           54                           126 
      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                           54                           126 
[1] "Del Peak  7(3p14.2)"
[1] 3
      DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE 
                           64                           116 
      DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE 
                           64                           116 
[1] "Del Peak  8(3q26.31)"
[1] 3
      DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE 
                            20                            160 
      DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE 
                            20                            160 
[1] "Del Peak  9(4p16.3)"
[1] 3
      DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE 
                           63                           117 
      DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE 
                           63                           117 
[1] "Del Peak 10(4q22.1)"
[1] 3
      DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE 
                           75                           105 
      DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE 
                           75                           105 
[1] "Del Peak 11(4q34.3)"
[1] 3
      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                           73                           107 
      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                           73                           107 
[1] "Del Peak 12(5q11.2)"
[1] 3
      DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE 
                           56                           124 
      DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE 
                           56                           124 
[1] "Del Peak 13(5q23.2)"
[1] 3
      DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE 
                           47                           133 
      DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE 
                           47                           133 
[1] "Del Peak 14(6p25.3)"
[1] 3
      DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE 
                           41                           139 
      DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE 
                           41                           139 
[1] "Del Peak 15(6q26)"
[1] 3
      DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE 
                         43                         137 
      DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE 
                         43                         137 
[1] "Del Peak 16(7q31.1)"
[1] 3
      DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE 
                           21                           159 
      DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE 
                           21                           159 
[1] "Del Peak 17(7q36.3)"
[1] 3
      DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE 
                           33                           147 
      DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE 
                           33                           147 
[1] "Del Peak 18(8p23.2)"
[1] 3
      DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE 
                           52                           128 
      DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE 
                           52                           128 
[1] "Del Peak 19(9p23)"
[1] 3
      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                         76                         104 
      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                         76                         104 
[1] "Del Peak 20(9p21.3)"
[1] 3
      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                           71                           109 
      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                           71                           109 
[1] "Del Peak 21(9q21.11)"
[1] 3
      DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE 
                            40                            140 
      DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE 
                            40                            140 
[1] "Del Peak 22(10p15.1)"
[1] 3
      DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE 
                            24                            156 
      DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE 
                            24                            156 
[1] "Del Peak 23(10q22.3)"
[1] 3
      DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE 
                            28                            152 
      DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE 
                            28                            152 
[1] "Del Peak 24(10q23.31)"
[1] 3
      DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE 
                             42                             138 
      DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE 
                             42                             138 
[1] "Del Peak 25(11p15.4)"
[1] 3
      DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE 
                            42                            138 
      DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE 
                            42                            138 
[1] "Del Peak 26(11q23.2)"
[1] 3
      DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE 
                            44                            136 
      DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE 
                            44                            136 
[1] "Del Peak 27(12p13.31)"
[1] 3
      DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE 
                             29                             151 
      DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE 
                             29                             151 
[1] "Del Peak 28(13q12.11)"
[1] 3
      DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE 
                             28                             152 
      DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE 
                             28                             152 
[1] "Del Peak 29(14q21.1)"
[1] 3
      DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE 
                            43                            137 
      DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE 
                            43                            137 
[1] "Del Peak 30(14q32.33)"
[1] 3
      DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE 
                             51                             129 
      DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE 
                             51                             129 
[1] "Del Peak 31(15q15.1)"
[1] 3
      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                            46                            134 
      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                            46                            134 
[1] "Del Peak 32(16p13.3)"
[1] 3
      DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE 
                            28                            152 
      DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE 
                            28                            152 
[1] "Del Peak 33(16q23.1)"
[1] 3
      DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE 
                            66                            114 
      DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE 
                            66                            114 
[1] "Del Peak 34(17p12)"
[1] 3
      DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE 
                          69                          111 
      DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE 
                          69                          111 
[1] "Del Peak 35(17q24.3)"
[1] 3
      DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE 
                            30                            150 
      DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE 
                            30                            150 
[1] "Del Peak 36(18q21.2)"
[1] 3
      DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE 
                            74                            106 
      DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE 
                            74                            106 
[1] "Del Peak 37(19p13.3)"
[1] 3
      DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE 
                            60                            120 
      DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE 
                            60                            120 
[1] "Del Peak 38(19q13.11)"
[1] 3
      DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE 
                             27                             153 
      DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE 
                             27                             153 
[1] "Del Peak 39(20p12.1)"
[1] 3
      DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE 
                            29                            151 
      DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE 
                            29                            151 
[1] "Del Peak 40(20p12.1)"
[1] 3
      DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE 
                            29                            151 
      DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE 
                            29                            151 
[1] "Del Peak 41(21q11.2)"
[1] 3
      DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE 
                            62                            118 
      DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE 
                            62                            118 
[1] "Del Peak 42(21q22.13)"
[1] 3
      DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE 
                             68                             112 
      DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE 
                             68                             112 
[1] "Del Peak 43(22q13.31)"
[1] 3
      DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE 
                             59                             121 
      DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE 
                             59                             121 
[1] "Del Peak 44(Xp22.2)"
[1] 3
      DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE 
                           32                           148 
      DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE 
                           32                           148 
[1] "Del Peak 45(Xp21.1)"
[1] 3
      DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE 
                           32                           148 
      DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE 
                           32                           148 
[1] "Del Peak 46(Xq21.33)"
[1] 3
      DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE 
                            23                            157 
      DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE 
                            23                            157 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "TUMORSTAGE"                            
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "COMPLETENESS.OF.RESECTION"             
[16] "NUMBER.OF.LYMPH.NODES"                 
[17] "BATCHNUMBER"                           

Input Data has 17 rows and 180 columns.

[1] "Batch" "17"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4191 TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-4292 TCGA-BR-4294 TCGA-BR-4357 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 TCGA-BR-4367 TCGA-BR-4368 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 
          NA           NA           NA           29           NA           NA 
TCGA-BR-6455 TCGA-BR-6456 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
          43           NA           41           41           26           25 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
          19           19           52           66           30           37 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
          20           34           23           20            8           37 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
          45           14           38            4           32           25 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
          21            5          138           30           29           21 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
           5           33           25           40           21           29 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
          15           14           22            8           13            8 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
          36           47           45           23            6           18 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
          28           12           24           NA           24           16 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI 
          13            4            7            3           22           15 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
          68           25           21           11           15            9 
TCGA-CD-5803 TCGA-CD-5804 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
           2           NA          609           92          822          485 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
          31         1611          245         1644          122          426 
TCGA-CG-4442 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
          NA          912         1431          580          366          669 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
          31          273          576          215          365           31 
TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
          NA           NA           31           31          211           31 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
          31           30          182           29         2131          366 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
         457          881          944         1980          122         1674 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
         641          243          263          109          138          298 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
         476          293          249          210           21          181 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
         201          126           51          111          143          123 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
          89          130           19          237          199           61 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
          NA           12            6           92          109           31 
TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HF-7131 TCGA-HF-7132 TCGA-HF-7133 
          NA           NA           17           NA           NA           NA 
TCGA-HF-7134 TCGA-HF-7136 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
          NA           NA           NA          209          108           77 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=95,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=27,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "HISTOLOGICAL.TYPE"                     
 [4] "PATHOLOGY.T"                           
 [5] "PATHOLOGY.N"                           
 [6] "PATHOLOGICSPREAD(M)"                   
 [7] "TUMOR.STAGE"                           
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "COMPLETENESS.OF.RESECTION"             
[10] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
24 37 39 26 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 180 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 6 52 56 18 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 6 52 56 18 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 6 52 56 18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 6 52 56 18 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
44 49 23 15 
[1] "table(vv)"
vv
N0 N1 N2 N3 
44 49 23 15 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
44 49 23 15 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
44 49 23 15 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 24  37  39  26 
[1] "table(vv)"
vv
  I  II III  IV 
 24  37  39  26 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 24  37  39  26 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 24  37  39  26 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=27, binary=FALSE, numeric=TRUE

Clustering(1) Variable = Amp Peak  1(1p36.22)
D1V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  1(1P36.22) CNV        19   2
  AMP PEAK  1(1P36.22) WILD-TYPE 105  17
      AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE 
                            21                            122 
      AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE 
                             2                             17 
$`AMP PEAK  1(1P36.22) CNV`
TCGA-BR-7197 TCGA-BR-7901 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-A4J1 TCGA-BR-A4J8 
        1.48         0.95         0.43         0.26         0.72         0.23 
TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-5718 
        0.69         0.30        29.98        47.05        19.07         1.02 
TCGA-CG-5732 TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6528 TCGA-FP-7829 TCGA-HJ-7597 
       55.04         8.19         4.14         1.68         0.20        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

$`AMP PEAK  1(1P36.22) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        0.26         1.22         0.46         1.25         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 
        0.82         0.69         0.16         4.54         0.99         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 
        0.49         0.46         0.72         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 
        0.79         0.79         0.53         0.43         0.13         0.10 
TCGA-BR-A4PF TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.72         0.49         2.24         0.82         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 
       52.96         8.05        54.05         4.01        14.01        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 
        3.58         4.54         9.80        15.65         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        0.69         5.95         6.61         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
       72.23         0.39         3.02         3.58         1.02        59.05 
TCGA-FP-8210 TCGA-FP-8631 
        5.03         0.56 

      AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE 
                          0.20                           0.07 
      AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE 
                         55.04                          72.23 
      AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE 
                          1.68                           1.22 
[1] "0.2 - 55.0 (1.7)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK  1(1P36.22) CNV" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK  1(1P36.22) WILD-TYPE"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "AMP PEAK  1(1P36.22) CNV"       "AMP PEAK  1(1P36.22) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK  1(1P36.22) CNV" 
[1] "hr=" "1.9"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) CNV          5   21
  AMP PEAK  1(1P36.22) WILD-TYPE   67   87
        clus
vv       AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE
  FEMALE                        5                             67
  MALE                         21                             87
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  1(1P36.22) CNV                                           0
  AMP PEAK  1(1P36.22) WILD-TYPE                                    10
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  1(1P36.22) CNV                                                            3
  AMP PEAK  1(1P36.22) WILD-TYPE                                                     13
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  1(1P36.22) CNV                                                                       1
  AMP PEAK  1(1P36.22) WILD-TYPE                                                                 7
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  1(1P36.22) CNV                                                              0
  AMP PEAK  1(1P36.22) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  1(1P36.22) CNV                                              1
  AMP PEAK  1(1P36.22) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  1(1P36.22) CNV                                           4
  AMP PEAK  1(1P36.22) WILD-TYPE                                    12
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  1(1P36.22) CNV                                                            7
  AMP PEAK  1(1P36.22) WILD-TYPE                                                     66
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  1(1P36.22) CNV                                                       2
  AMP PEAK  1(1P36.22) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  1(1P36.22) CNV                                                        1
  AMP PEAK  1(1P36.22) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  1(1P36.22) CNV                                                      1
  AMP PEAK  1(1P36.22) WILD-TYPE                                                9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  1(1P36.22) CNV                                                                            4
  AMP PEAK  1(1P36.22) WILD-TYPE                                                                     24
D1V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  1(1P36.22) CNV        1  8 10  1
  AMP PEAK  1(1P36.22) WILD-TYPE  5 44 46 17
D1V5, multiclass
    clus
vv   AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE
  T1                        1                              5
  T2                        8                             44
  T3                       10                             46
  T4                        1                             17
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK  1(1P36.22) CNV        4 10  3  3
  AMP PEAK  1(1P36.22) WILD-TYPE 40 39 20 12
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE
  N0                        4                             40
  N1                       10                             39
  N2                        3                             20
  N3                        3                             12
                                vv
clus                              M0  M1  MX
  AMP PEAK  1(1P36.22) CNV        18   1   2
  AMP PEAK  1(1P36.22) WILD-TYPE 100  15   6
D1V7, multiclass
    clus
vv   AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE
  M0                       18                            100
  M1                        1                             15
  MX                        2                              6
                                vv
clus                              I II III IV
  AMP PEAK  1(1P36.22) CNV        2  7   9  1
  AMP PEAK  1(1P36.22) WILD-TYPE 22 30  30 25
D1V8, multiclass
     clus
vv    AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE
  I                          2                             22
  II                         7                             30
  III                        9                             30
  IV                         1                             25
D1V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) CNV          1   25
  AMP PEAK  1(1P36.22) WILD-TYPE    4  150
     clus
vv    AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE
  NO                         1                              4
  YES                       25                            150
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK  1(1P36.22) CNV        19   0   0   3
  AMP PEAK  1(1P36.22) WILD-TYPE 106   7  12  22
D1V10, multiclass
    clus
vv   AMP PEAK  1(1P36.22) CNV AMP PEAK  1(1P36.22) WILD-TYPE
  R0                       19                            106
  R1                        0                              7
  R2                        0                             12
  RX                        3                             22
D1V11, continuous

Clustering(2) Variable = Amp Peak  2(1q21.3)
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q21.3) CNV       36  7
  AMP PEAK  2(1Q21.3) WILD-TYPE 88 12
      AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE 
                           43                           100 
      AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE 
                            7                            12 
$`AMP PEAK  2(1Q21.3) CNV`
TCGA-BR-6458 TCGA-BR-6705 TCGA-BR-7197 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 
        1.35         1.71         1.48         0.69         4.54         0.95 
TCGA-BR-8060 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-A4J1 TCGA-BR-A4J5 
        1.32         0.43         0.26         1.55         0.72         0.43 
TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5800 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4444 
        0.23         0.49         0.36        52.96        54.05        47.05 
TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5724 
       21.99        18.94         7.07        12.00         1.02        12.03 
TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 
        4.01         4.54        15.65         8.19         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        1.68         4.70         4.04         2.93         4.27         0.62 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-8631 TCGA-HJ-7597 
        7.79        72.23         0.39         3.02         0.56        26.43 
TCGA-IN-7808 
        3.55 

$`AMP PEAK  2(1Q21.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         0.62         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 
        0.46         1.25         0.13         1.05         0.82         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 
        0.99         0.69         0.16         1.08         0.82         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 
        0.95         0.49         0.46         0.72         0.26         1.18 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.79         0.79         0.53         0.13         0.10         0.72 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.24         0.82         0.69         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
       20.02         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 
        4.01        14.01        29.98        19.07        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
        8.98         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        3.58         9.80         9.63         6.90         0.69         5.95 
TCGA-D7-6815 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8099 
        3.65         6.54         2.01         0.20         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 TCGA-IP-7968 
       59.05         5.03         6.87         2.53 

      AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE 
                         0.23                          0.07 
      AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE 
                         3.55                          1.02 
[1] "0.2 - 72.2 (3.5)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  2(1Q21.3) CNV" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  2(1Q21.3) CNV"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  2(1Q21.3) WILD-TYPE"       "AMP PEAK  2(1Q21.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  2(1Q21.3) WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) CNV         25   35
  AMP PEAK  2(1Q21.3) WILD-TYPE   47   73
        clus
vv       AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE
  FEMALE                      25                            47
  MALE                        35                            73
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  2(1Q21.3) CNV                                           1
  AMP PEAK  2(1Q21.3) WILD-TYPE                                     9
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  2(1Q21.3) CNV                                                            6
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                     10
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  2(1Q21.3) CNV                                                                       3
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                                 5
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  2(1Q21.3) CNV                                                              1
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  2(1Q21.3) CNV                                              1
  AMP PEAK  2(1Q21.3) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  2(1Q21.3) CNV                                           5
  AMP PEAK  2(1Q21.3) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  2(1Q21.3) CNV                                                           22
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                     51
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  2(1Q21.3) CNV                                                       2
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  2(1Q21.3) CNV                                                        2
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  2(1Q21.3) CNV                                                      6
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  2(1Q21.3) CNV                                                                            8
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                                     20
D2V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  2(1Q21.3) CNV        2 19 19  5
  AMP PEAK  2(1Q21.3) WILD-TYPE  4 33 37 13
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE
  T1                       2                             4
  T2                      19                            33
  T3                      19                            37
  T4                       5                            13
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  2(1Q21.3) CNV       11 16  7  7
  AMP PEAK  2(1Q21.3) WILD-TYPE 33 33 16  8
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE
  N0                      11                            33
  N1                      16                            33
  N2                       7                            16
  N3                       7                             8
                               vv
clus                            M0 M1 MX
  AMP PEAK  2(1Q21.3) CNV       40  5  3
  AMP PEAK  2(1Q21.3) WILD-TYPE 78 11  5
D2V7, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE
  M0                      40                            78
  M1                       5                            11
  MX                       3                             5
                               vv
clus                             I II III IV
  AMP PEAK  2(1Q21.3) CNV        8 11  12 10
  AMP PEAK  2(1Q21.3) WILD-TYPE 16 26  27 16
D2V8, multiclass
     clus
vv    AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE
  I                         8                            16
  II                       11                            26
  III                      12                            27
  IV                       10                            16
D2V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) CNV          4   56
  AMP PEAK  2(1Q21.3) WILD-TYPE    1  119
     clus
vv    AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE
  NO                        4                             1
  YES                      56                           119
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  2(1Q21.3) CNV       39  4  4  9
  AMP PEAK  2(1Q21.3) WILD-TYPE 86  3  8 16
D2V10, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) CNV AMP PEAK  2(1Q21.3) WILD-TYPE
  R0                      39                            86
  R1                       4                             3
  R2                       4                             8
  RX                       9                            16
D2V11, continuous

Clustering(3) Variable = Amp Peak  3(1q42.3)
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(1Q42.3) CNV       42  6
  AMP PEAK  3(1Q42.3) WILD-TYPE 82 13
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                           48                            95 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                            6                            13 
$`AMP PEAK  3(1Q42.3) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 
        1.35         0.62         1.71         1.48         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8080 
        0.69         4.54         0.82         1.32         0.69         0.49 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8297 TCGA-BR-A4J1 TCGA-BR-A4J5 
        0.43         0.26         1.55         0.76         0.72         0.43 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-CD-5800 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4449 
        0.23         0.10         0.36        52.96        54.05        19.07 
TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5719 TCGA-CG-5730 
       21.99        18.94         7.07        12.00         1.02         4.01 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 
        3.58         4.54         9.63         8.19         6.61         4.14 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        4.70         4.04         2.93         4.27         0.62         7.79 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
       72.23         0.39         3.02         0.56        26.43         3.55 

$`AMP PEAK  3(1Q42.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.82         0.62         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        1.12         0.76         0.66         0.26         1.22         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        1.25         0.13         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.16         1.08         0.95         0.46         0.72         0.26 
TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.18         1.48         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.79         0.79         0.53         0.13         0.72         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.24         0.82         0.69         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
       20.02         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 
        4.01        14.01        29.98        47.05        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        8.98         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        8.65         9.80        15.65         6.90         0.69         5.95 
TCGA-D7-6528 TCGA-D7-6815 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 
        1.68         3.65         6.54         2.01         0.20         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 TCGA-IP-7968 
        1.02        59.05         5.03         6.87         2.53 

      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE 
                         2.32                          1.08 
[1] "0.1 - 72.2 (2.3)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  3(1Q42.3) CNV" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  3(1Q42.3) CNV"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  3(1Q42.3) WILD-TYPE"       "AMP PEAK  3(1Q42.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  3(1Q42.3) WILD-TYPE" 
[1] "hr=" "1.3"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) CNV         23   38
  AMP PEAK  3(1Q42.3) WILD-TYPE   49   70
        clus
vv       AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                      23                            49
  MALE                        38                            70
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  3(1Q42.3) CNV                                           2
  AMP PEAK  3(1Q42.3) WILD-TYPE                                     8
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  3(1Q42.3) CNV                                                            6
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                     10
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  3(1Q42.3) CNV                                                                       5
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                                 3
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  3(1Q42.3) CNV                                                              2
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  3(1Q42.3) CNV                                              1
  AMP PEAK  3(1Q42.3) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  3(1Q42.3) CNV                                           3
  AMP PEAK  3(1Q42.3) WILD-TYPE                                    13
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  3(1Q42.3) CNV                                                           22
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                     51
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  3(1Q42.3) CNV                                                       2
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  3(1Q42.3) CNV                                                        2
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  3(1Q42.3) CNV                                                      7
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  3(1Q42.3) CNV                                                                            8
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                                     20
D3V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  3(1Q42.3) CNV        1 17 17  7
  AMP PEAK  3(1Q42.3) WILD-TYPE  5 35 39 11
D3V5, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  T1                       1                             5
  T2                      17                            35
  T3                      17                            39
  T4                       7                            11
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  3(1Q42.3) CNV       14 12  8  5
  AMP PEAK  3(1Q42.3) WILD-TYPE 30 37 15 10
D3V6, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  N0                      14                            30
  N1                      12                            37
  N2                       8                            15
  N3                       5                            10
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(1Q42.3) CNV       37  5  3
  AMP PEAK  3(1Q42.3) WILD-TYPE 81 11  5
D3V7, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  M0                      37                            81
  M1                       5                            11
  MX                       3                             5
                               vv
clus                             I II III IV
  AMP PEAK  3(1Q42.3) CNV        8 12   9 10
  AMP PEAK  3(1Q42.3) WILD-TYPE 16 25  30 16
D3V8, multiclass
     clus
vv    AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  I                         8                            16
  II                       12                            25
  III                       9                            30
  IV                       10                            16
D3V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) CNV          3   58
  AMP PEAK  3(1Q42.3) WILD-TYPE    2  117
     clus
vv    AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  NO                        3                             2
  YES                      58                           117
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  3(1Q42.3) CNV       43  2  3  9
  AMP PEAK  3(1Q42.3) WILD-TYPE 82  5  9 16
D3V10, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) CNV AMP PEAK  3(1Q42.3) WILD-TYPE
  R0                      43                            82
  R1                       2                             5
  R2                       3                             9
  RX                       9                            16
D3V11, continuous

Clustering(4) Variable = Amp Peak  4(3q27.1)
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(3Q27.1) CNV       41  4
  AMP PEAK  4(3Q27.1) WILD-TYPE 83 15
      AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE 
                           45                            98 
      AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE 
                            4                            15 
$`AMP PEAK  4(3Q27.1) CNV`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6565 TCGA-BR-6706 TCGA-BR-6801 
        5.62         0.10         0.95         0.62         2.17         1.12 
TCGA-BR-6802 TCGA-BR-7196 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7958 
        0.76         1.22         0.16         4.54         0.95         0.16 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8284 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8296 
        0.82         1.32         0.72         0.26         1.55         1.48 
TCGA-BR-A4IU TCGA-BR-A4J4 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4301 
        0.59         0.53         0.69         0.36         0.49         3.02 
TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       15.95        52.96         8.05        47.05        19.07        12.03 
TCGA-CG-4472 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-6519 TCGA-D7-6521 
       12.00         1.02        12.03        15.02        15.65         8.19 
TCGA-D7-6527 TCGA-D7-6815 TCGA-EQ-5647 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        4.14         3.65         0.62         0.39         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 
        1.02         0.56        26.43 

$`AMP PEAK  4(3Q27.1) WILD-TYPE`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 
        1.41         1.35         1.35         0.85         0.82         0.62 
TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6803 TCGA-BR-6852 
        1.71         0.99         1.22         0.66         0.66         0.26 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8077 TCGA-BR-8078 
        0.69         0.99         0.69         1.08         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8297 
        0.49         0.46         0.26         0.43         1.18         0.76 
TCGA-BR-8592 TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.20         0.92         0.39         0.79         0.72         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.43         0.13         0.23         0.10         0.72         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 
        2.24         0.82         0.30         0.07        20.02        27.02 
TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 
        1.02        54.05         4.01        14.01        29.98        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98        18.94         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       70.06        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 
        9.63         6.90         0.69         5.95         6.61         1.68 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 
        2.01        72.23         0.20        59.05         5.03         6.87 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

      AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE 
                        52.96                         72.23 
      AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE 
                        1.320                         1.235 
[1] "0.1 - 53.0 (1.3)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  4(3Q27.1) CNV" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK  4(3Q27.1) WILD-TYPE"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  4(3Q27.1) CNV"       "AMP PEAK  4(3Q27.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  4(3Q27.1) WILD-TYPE" "AMP PEAK  4(3Q27.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  4(3Q27.1) WILD-TYPE" 
[1] "hr=" "1.4"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q27.1) CNV         19   39
  AMP PEAK  4(3Q27.1) WILD-TYPE   53   69
        clus
vv       AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE
  FEMALE                      19                            53
  MALE                        39                            69
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  4(3Q27.1) CNV                                           2
  AMP PEAK  4(3Q27.1) WILD-TYPE                                     8
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  4(3Q27.1) CNV                                                            5
  AMP PEAK  4(3Q27.1) WILD-TYPE                                                     11
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  4(3Q27.1) CNV                                                                       5
  AMP PEAK  4(3Q27.1) WILD-TYPE                                                                 3
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  4(3Q27.1) CNV                                                              0
  AMP PEAK  4(3Q27.1) WILD-TYPE                                                        3
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  4(3Q27.1) CNV                                              1
  AMP PEAK  4(3Q27.1) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  4(3Q27.1) CNV                                           7
  AMP PEAK  4(3Q27.1) WILD-TYPE                                     9
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  4(3Q27.1) CNV                                                           27
  AMP PEAK  4(3Q27.1) WILD-TYPE                                                     46
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  4(3Q27.1) CNV                                                       2
  AMP PEAK  4(3Q27.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  4(3Q27.1) CNV                                                        2
  AMP PEAK  4(3Q27.1) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  4(3Q27.1) CNV                                                      1
  AMP PEAK  4(3Q27.1) WILD-TYPE                                                9
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  4(3Q27.1) CNV                                                                            4
  AMP PEAK  4(3Q27.1) WILD-TYPE                                                                     24
D4V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  4(3Q27.1) CNV        0 15 17  9
  AMP PEAK  4(3Q27.1) WILD-TYPE  6 37 39  9
D4V5, multiclass
    clus
vv   AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE
  T1                       0                             6
  T2                      15                            37
  T3                      17                            39
  T4                       9                             9
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  4(3Q27.1) CNV       12 20  6  4
  AMP PEAK  4(3Q27.1) WILD-TYPE 32 29 17 11
D4V6, multiclass
    clus
vv   AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE
  N0                      12                            32
  N1                      20                            29
  N2                       6                            17
  N3                       4                            11
                               vv
clus                            M0 M1 MX
  AMP PEAK  4(3Q27.1) CNV       37  5  3
  AMP PEAK  4(3Q27.1) WILD-TYPE 81 11  5
D4V7, multiclass
    clus
vv   AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE
  M0                      37                            81
  M1                       5                            11
  MX                       3                             5
                               vv
clus                             I II III IV
  AMP PEAK  4(3Q27.1) CNV        5 12  16  7
  AMP PEAK  4(3Q27.1) WILD-TYPE 19 25  23 19
D4V8, multiclass
     clus
vv    AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE
  I                         5                            19
  II                       12                            25
  III                      16                            23
  IV                        7                            19
D4V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q27.1) CNV          1   57
  AMP PEAK  4(3Q27.1) WILD-TYPE    4  118
     clus
vv    AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE
  NO                        1                             4
  YES                      57                           118
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  4(3Q27.1) CNV       42  1  3  8
  AMP PEAK  4(3Q27.1) WILD-TYPE 83  6  9 17
D4V10, multiclass
    clus
vv   AMP PEAK  4(3Q27.1) CNV AMP PEAK  4(3Q27.1) WILD-TYPE
  R0                      42                            83
  R1                       1                             6
  R2                       3                             9
  RX                       8                            17
D4V11, continuous

Clustering(5) Variable = Amp Peak  5(5p13.1)
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(5P13.1) CNV       37  6
  AMP PEAK  5(5P13.1) WILD-TYPE 87 13
      AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE 
                           43                           100 
      AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE 
                            6                            13 
$`AMP PEAK  5(5P13.1) CNV`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.35         1.48         1.25         1.05         0.82         0.69 
TCGA-BR-7901 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8284 TCGA-BR-8286 
        0.95         1.08         1.32         0.69         0.72         0.43 
TCGA-BR-8289 TCGA-BR-8296 TCGA-BR-A4QI TCGA-CD-5801 TCGA-CG-4436 TCGA-CG-4438 
        0.26         1.48         0.49         0.49        52.96        54.05 
TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       47.05        12.03        21.99        18.94         7.07        12.00 
TCGA-CG-5718 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5578 
        1.02         0.95        12.03        15.02         4.01         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 
        4.54         9.80         4.14         1.68         4.04         2.93 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 
        0.62         7.79        72.23         0.39         0.20         1.02 
TCGA-IN-7808 
        3.55 

$`AMP PEAK  5(5P13.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.22         0.46         0.13         0.16         4.54         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.69         0.16         0.82         0.95         0.49         0.46 
TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        0.26         1.18         1.55         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.92         0.39         0.79         0.72         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL 
        0.43         0.13         0.23         0.10         0.72         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.69         0.36         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 
        3.02        27.02        15.95         1.02         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 
       14.01        29.98        19.07         1.02         8.98         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 
       70.06        28.96        31.04        65.10        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        7.99         8.65        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 
        0.69         5.95         6.61         3.65         4.70         4.27 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        6.54         2.01         3.02         3.58        59.05         5.03 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        0.56        26.43         6.87         2.53 

      AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE 
                         0.20                          0.07 
      AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE 
                         1.48                          1.07 
[1] "0.2 - 72.2 (1.5)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  5(5P13.1) CNV"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  5(5P13.1) CNV" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  5(5P13.1) WILD-TYPE"       "AMP PEAK  5(5P13.1) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  5(5P13.1) WILD-TYPE" 
[1] "hr=" "1.3"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5P13.1) CNV         18   36
  AMP PEAK  5(5P13.1) WILD-TYPE   54   72
        clus
vv       AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE
  FEMALE                      18                            54
  MALE                        36                            72
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  5(5P13.1) CNV                                           0
  AMP PEAK  5(5P13.1) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  5(5P13.1) CNV                                                            4
  AMP PEAK  5(5P13.1) WILD-TYPE                                                     12
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  5(5P13.1) CNV                                                                       5
  AMP PEAK  5(5P13.1) WILD-TYPE                                                                 3
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  5(5P13.1) CNV                                                              1
  AMP PEAK  5(5P13.1) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  5(5P13.1) CNV                                              0
  AMP PEAK  5(5P13.1) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  5(5P13.1) CNV                                           5
  AMP PEAK  5(5P13.1) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  5(5P13.1) CNV                                                           18
  AMP PEAK  5(5P13.1) WILD-TYPE                                                     55
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  5(5P13.1) CNV                                                       4
  AMP PEAK  5(5P13.1) WILD-TYPE                                                 3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  5(5P13.1) CNV                                                        1
  AMP PEAK  5(5P13.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  5(5P13.1) CNV                                                      4
  AMP PEAK  5(5P13.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  5(5P13.1) CNV                                                                            9
  AMP PEAK  5(5P13.1) WILD-TYPE                                                                     19
D5V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  5(5P13.1) CNV        0 16 18  7
  AMP PEAK  5(5P13.1) WILD-TYPE  6 36 38 11
D5V5, multiclass
    clus
vv   AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE
  T1                       0                             6
  T2                      16                            36
  T3                      18                            38
  T4                       7                            11
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  5(5P13.1) CNV       10 18  5  7
  AMP PEAK  5(5P13.1) WILD-TYPE 34 31 18  8
D5V6, multiclass
    clus
vv   AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE
  N0                      10                            34
  N1                      18                            31
  N2                       5                            18
  N3                       7                             8
                               vv
clus                            M0 M1 MX
  AMP PEAK  5(5P13.1) CNV       36  6  2
  AMP PEAK  5(5P13.1) WILD-TYPE 82 10  6
D5V7, multiclass
    clus
vv   AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE
  M0                      36                            82
  M1                       6                            10
  MX                       2                             6
                               vv
clus                             I II III IV
  AMP PEAK  5(5P13.1) CNV        6 14   7 12
  AMP PEAK  5(5P13.1) WILD-TYPE 18 23  32 14
D5V8, multiclass
     clus
vv    AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE
  I                         6                            18
  II                       14                            23
  III                       7                            32
  IV                       12                            14
D5V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5P13.1) CNV          3   51
  AMP PEAK  5(5P13.1) WILD-TYPE    2  124
     clus
vv    AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE
  NO                        3                             2
  YES                      51                           124
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  5(5P13.1) CNV       38  3  5  5
  AMP PEAK  5(5P13.1) WILD-TYPE 87  4  7 20
D5V10, multiclass
    clus
vv   AMP PEAK  5(5P13.1) CNV AMP PEAK  5(5P13.1) WILD-TYPE
  R0                      38                            87
  R1                       3                             4
  R2                       5                             7
  RX                       5                            20
D5V11, continuous

Clustering(6) Variable = Amp Peak  6(6p21.1)
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(6P21.1) CNV       37  0
  AMP PEAK  6(6P21.1) WILD-TYPE 87 19
      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                           37                           106 
      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                            0                            19 
$`AMP PEAK  6(6P21.1) CNV`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 
        1.35         1.35         0.62         1.48         1.25         1.05 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8060 TCGA-BR-8286 TCGA-BR-8289 
        0.69         4.54         0.95         1.32         0.43         0.26 
TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5799 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4449 
        0.23         0.49         0.69        52.96        54.05        19.07 
TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       12.03        18.94         1.02        31.04         4.01        55.04 
TCGA-D7-6518 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 
        9.80         6.61         4.14         1.68         3.65         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 
        2.93         4.27         7.79         0.39         0.20         1.02 
TCGA-FP-8631 
        0.56 

$`AMP PEAK  6(6P21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        1.12         0.76         0.66         0.26         1.22         0.46 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        0.13         0.82         0.16         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        1.08         0.82         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.72         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.79         0.53         0.43         0.13         0.10         0.72 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.24         0.82         0.36         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
       20.02         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4462 
        4.01        14.01        29.98        47.05        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 
       12.03        15.02        28.96        65.10        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        8.65         3.58         4.54        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6817 TCGA-EQ-5647 TCGA-F1-6177 
        6.90         0.69         5.95         4.70         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        2.01        72.23         3.02         3.58        59.05         5.03 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                         0.20                          0.07 
      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                        55.04                         72.23 
      AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE 
                         1.48                          1.10 
[1] "0.2 - 55.0 (1.5)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  6(6P21.1) CNV"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK  6(6P21.1) WILD-TYPE"       "AMP PEAK  6(6P21.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  6(6P21.1) CNV" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE" 
[1] "hr="     "3.1e+08"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6P21.1) CNV         19   34
  AMP PEAK  6(6P21.1) WILD-TYPE   53   74
        clus
vv       AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  FEMALE                      19                            53
  MALE                        34                            74
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  6(6P21.1) CNV                                           0
  AMP PEAK  6(6P21.1) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  6(6P21.1) CNV                                                            5
  AMP PEAK  6(6P21.1) WILD-TYPE                                                     11
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  6(6P21.1) CNV                                                                       3
  AMP PEAK  6(6P21.1) WILD-TYPE                                                                 5
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  6(6P21.1) CNV                                                              0
  AMP PEAK  6(6P21.1) WILD-TYPE                                                        3
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  6(6P21.1) CNV                                              0
  AMP PEAK  6(6P21.1) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  6(6P21.1) CNV                                           2
  AMP PEAK  6(6P21.1) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  6(6P21.1) CNV                                                           24
  AMP PEAK  6(6P21.1) WILD-TYPE                                                     49
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  6(6P21.1) CNV                                                       3
  AMP PEAK  6(6P21.1) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  6(6P21.1) CNV                                                        1
  AMP PEAK  6(6P21.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  6(6P21.1) CNV                                                      5
  AMP PEAK  6(6P21.1) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  6(6P21.1) CNV                                                                           10
  AMP PEAK  6(6P21.1) WILD-TYPE                                                                     18
D6V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  6(6P21.1) CNV        1 18 17  3
  AMP PEAK  6(6P21.1) WILD-TYPE  5 34 39 15
D6V5, multiclass
    clus
vv   AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  T1                       1                             5
  T2                      18                            34
  T3                      17                            39
  T4                       3                            15
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  6(6P21.1) CNV       15 19  5  3
  AMP PEAK  6(6P21.1) WILD-TYPE 29 30 18 12
D6V6, multiclass
    clus
vv   AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  N0                      15                            29
  N1                      19                            30
  N2                       5                            18
  N3                       3                            12
                               vv
clus                            M0 M1 MX
  AMP PEAK  6(6P21.1) CNV       41  1  3
  AMP PEAK  6(6P21.1) WILD-TYPE 77 15  5
D6V7, multiclass
    clus
vv   AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  M0                      41                            77
  M1                       1                            15
  MX                       3                             5
                               vv
clus                             I II III IV
  AMP PEAK  6(6P21.1) CNV        8 16   8  7
  AMP PEAK  6(6P21.1) WILD-TYPE 16 21  31 19
D6V8, multiclass
     clus
vv    AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  I                         8                            16
  II                       16                            21
  III                       8                            31
  IV                        7                            19
D6V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6P21.1) CNV          3   50
  AMP PEAK  6(6P21.1) WILD-TYPE    2  125
     clus
vv    AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  NO                        3                             2
  YES                      50                           125
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  6(6P21.1) CNV       37  2  1 11
  AMP PEAK  6(6P21.1) WILD-TYPE 88  5 11 14
D6V10, multiclass
    clus
vv   AMP PEAK  6(6P21.1) CNV AMP PEAK  6(6P21.1) WILD-TYPE
  R0                      37                            88
  R1                       2                             5
  R2                       1                            11
  RX                      11                            14
D6V11, continuous

Clustering(7) Variable = Amp Peak  7(6q12)
D7V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  7(6Q12) CNV        24   2
  AMP PEAK  7(6Q12) WILD-TYPE 100  17
      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                         26                         117 
      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                          2                          17 
$`AMP PEAK  7(6Q12) CNV`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-8060 
        1.35         1.48         1.25         1.05         4.54         1.32 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5799 
        0.43         0.26         0.72         0.23         0.49         0.69 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4466 TCGA-CG-5719 TCGA-CG-5730 
       52.96        54.05         4.01        18.94         1.02         4.01 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 
        6.61         4.14         4.04         2.93         4.27         7.79 
TCGA-FP-7735 TCGA-FP-7829 
        0.39         0.20 

$`AMP PEAK  7(6Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        1.22         0.46         0.13         0.82         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.92         0.39         0.79         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 
        0.13         0.10         0.72         2.24         0.82         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       15.95         1.02         8.05        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 
        8.19         6.90         0.69         5.95         1.68         3.65 
TCGA-D7-6817 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 
        4.70         0.62         6.54         2.01        72.23         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 
        3.58         1.02        59.05         5.03         0.56        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                       0.20                        0.07 
      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                      54.05                       72.23 
      AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE 
                      1.415                       1.180 
[1] "0.2 - 54.0 (1.4)" "0.1 - 72.2 (1.2)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-FP-7829                  TCGA-FP-7916 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-FP-7829                  TCGA-FP-7916 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "AMP PEAK  7(6Q12) CNV"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  7(6Q12) WILD-TYPE"       "AMP PEAK  7(6Q12) CNV" 
                 TCGA-FP-7829                  TCGA-FP-7916 
      "AMP PEAK  7(6Q12) CNV" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" 
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) CNV         17   23
  AMP PEAK  7(6Q12) WILD-TYPE   55   85
        clus
vv       AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  FEMALE                    17                          55
  MALE                      23                          85
                             vv
clus                          STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  7(6Q12) CNV                                           0
  AMP PEAK  7(6Q12) WILD-TYPE                                    10
                             vv
clus                          STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  7(6Q12) CNV                                                            5
  AMP PEAK  7(6Q12) WILD-TYPE                                                     11
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  7(6Q12) CNV                                                                       2
  AMP PEAK  7(6Q12) WILD-TYPE                                                                 6
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  7(6Q12) CNV                                                              0
  AMP PEAK  7(6Q12) WILD-TYPE                                                        3
                             vv
clus                          STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  7(6Q12) CNV                                              0
  AMP PEAK  7(6Q12) WILD-TYPE                                        1
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  7(6Q12) CNV                                           2
  AMP PEAK  7(6Q12) WILD-TYPE                                    14
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  7(6Q12) CNV                                                           17
  AMP PEAK  7(6Q12) WILD-TYPE                                                     56
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  7(6Q12) CNV                                                       1
  AMP PEAK  7(6Q12) WILD-TYPE                                                 6
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  7(6Q12) CNV                                                        1
  AMP PEAK  7(6Q12) WILD-TYPE                                                  2
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  7(6Q12) CNV                                                      3
  AMP PEAK  7(6Q12) WILD-TYPE                                                7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  7(6Q12) CNV                                                                            9
  AMP PEAK  7(6Q12) WILD-TYPE                                                                     19
D7V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK  7(6Q12) CNV        1 10 15  4
  AMP PEAK  7(6Q12) WILD-TYPE  5 42 41 14
D7V5, multiclass
    clus
vv   AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  T1                     1                           5
  T2                    10                          42
  T3                    15                          41
  T4                     4                          14
                             vv
clus                          N0 N1 N2 N3
  AMP PEAK  7(6Q12) CNV       10 13  4  3
  AMP PEAK  7(6Q12) WILD-TYPE 34 36 19 12
D7V6, multiclass
    clus
vv   AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  N0                    10                          34
  N1                    13                          36
  N2                     4                          19
  N3                     3                          12
                             vv
clus                          M0 M1 MX
  AMP PEAK  7(6Q12) CNV       27  3  3
  AMP PEAK  7(6Q12) WILD-TYPE 91 13  5
D7V7, multiclass
    clus
vv   AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  M0                    27                          91
  M1                     3                          13
  MX                     3                           5
                             vv
clus                           I II III IV
  AMP PEAK  7(6Q12) CNV        6  9   8  6
  AMP PEAK  7(6Q12) WILD-TYPE 18 28  31 20
D7V8, multiclass
     clus
vv    AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  I                       6                          18
  II                      9                          28
  III                     8                          31
  IV                      6                          20
D7V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) CNV          2   38
  AMP PEAK  7(6Q12) WILD-TYPE    3  137
     clus
vv    AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  NO                      2                           3
  YES                    38                         137
                             vv
clus                          R0 R1 R2 RX
  AMP PEAK  7(6Q12) CNV       26  1  2  9
  AMP PEAK  7(6Q12) WILD-TYPE 99  6 10 16
D7V10, multiclass
    clus
vv   AMP PEAK  7(6Q12) CNV AMP PEAK  7(6Q12) WILD-TYPE
  R0                    26                          99
  R1                     1                           6
  R2                     2                          10
  RX                     9                          16
D7V11, continuous

Clustering(8) Variable = Amp Peak  8(6q21)
D8V1, survival
                             sevent
clus2                           0   1
  AMP PEAK  8(6Q21) CNV        21   3
  AMP PEAK  8(6Q21) WILD-TYPE 103  16
      AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE 
                         24                         119 
      AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE 
                          3                          16 
$`AMP PEAK  8(6Q21) CNV`
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-8060 TCGA-BR-8289 
        1.48         1.25         1.05         0.69         1.32         0.26 
TCGA-BR-A4J1 TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4438 
        0.72         0.69         0.36         3.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4466 TCGA-CG-5724 TCGA-D7-6521 TCGA-D7-6527 
        4.01        47.05        18.94        12.03         8.19         4.14 
TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-IN-7808 
        1.68         4.04         2.93         4.27         7.79         3.55 

$`AMP PEAK  8(6Q21) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 
        0.26         1.22         0.46         0.13         0.82         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        4.54         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        0.82         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.26         0.43         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.53         0.43         0.13         0.23         0.10         0.72 
TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.49         2.24         0.82         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 
       20.02        27.02        15.95         1.02         8.05        14.01 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
       15.65         9.63         6.90         0.69         5.95         6.61 
TCGA-D7-6815 TCGA-D7-6817 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        3.65         4.70         0.62         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        0.39         0.20         3.02         3.58         1.02        59.05 
TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        5.03         0.56        26.43         6.87         2.53 

      AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE 
                       0.26                        0.07 
      AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE 
                      54.05                       72.23 
      AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE 
                      3.285                       1.020 
[1] "0.3 - 54.0 (3.3)" "0.1 - 72.2 (1.0)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-IP-7968 
"AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-IP-7968 
"AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
      "AMP PEAK  8(6Q21) CNV" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "AMP PEAK  8(6Q21) CNV"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"AMP PEAK  8(6Q21) WILD-TYPE" "AMP PEAK  8(6Q21) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"AMP PEAK  8(6Q21) WILD-TYPE"       "AMP PEAK  8(6Q21) CNV" 
                 TCGA-IP-7968 
"AMP PEAK  8(6Q21) WILD-TYPE" 
[1] "hr=" "1.2"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q21) CNV         14   19
  AMP PEAK  8(6Q21) WILD-TYPE   58   89
        clus
vv       AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE
  FEMALE                    14                          58
  MALE                      19                          89
                             vv
clus                          STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  8(6Q21) CNV                                           0
  AMP PEAK  8(6Q21) WILD-TYPE                                    10
                             vv
clus                          STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  8(6Q21) CNV                                                            2
  AMP PEAK  8(6Q21) WILD-TYPE                                                     14
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  8(6Q21) CNV                                                                       2
  AMP PEAK  8(6Q21) WILD-TYPE                                                                 6
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  8(6Q21) CNV                                                              0
  AMP PEAK  8(6Q21) WILD-TYPE                                                        3
                             vv
clus                          STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  8(6Q21) CNV                                              0
  AMP PEAK  8(6Q21) WILD-TYPE                                        1
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  8(6Q21) CNV                                           4
  AMP PEAK  8(6Q21) WILD-TYPE                                    12
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  8(6Q21) CNV                                                           13
  AMP PEAK  8(6Q21) WILD-TYPE                                                     60
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  8(6Q21) CNV                                                       0
  AMP PEAK  8(6Q21) WILD-TYPE                                                 7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  8(6Q21) CNV                                                        2
  AMP PEAK  8(6Q21) WILD-TYPE                                                  1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  8(6Q21) CNV                                                      3
  AMP PEAK  8(6Q21) WILD-TYPE                                                7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  8(6Q21) CNV                                                                            6
  AMP PEAK  8(6Q21) WILD-TYPE                                                                     22
D8V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK  8(6Q21) CNV        0 10 12  4
  AMP PEAK  8(6Q21) WILD-TYPE  6 42 44 14
D8V5, multiclass
    clus
vv   AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE
  T1                     0                           6
  T2                    10                          42
  T3                    12                          44
  T4                     4                          14
                             vv
clus                          N0 N1 N2 N3
  AMP PEAK  8(6Q21) CNV        8 11  4  4
  AMP PEAK  8(6Q21) WILD-TYPE 36 38 19 11
D8V6, multiclass
    clus
vv   AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE
  N0                     8                          36
  N1                    11                          38
  N2                     4                          19
  N3                     4                          11
                             vv
clus                          M0 M1 MX
  AMP PEAK  8(6Q21) CNV       24  4  1
  AMP PEAK  8(6Q21) WILD-TYPE 94 12  7
D8V7, multiclass
    clus
vv   AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE
  M0                    24                          94
  M1                     4                          12
  MX                     1                           7
                             vv
clus                           I II III IV
  AMP PEAK  8(6Q21) CNV        4  8   7  7
  AMP PEAK  8(6Q21) WILD-TYPE 20 29  32 19
D8V8, multiclass
     clus
vv    AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE
  I                       4                          20
  II                      8                          29
  III                     7                          32
  IV                      7                          19
D8V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  8(6Q21) CNV          2   31
  AMP PEAK  8(6Q21) WILD-TYPE    3  144
     clus
vv    AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE
  NO                      2                           3
  YES                    31                         144
                             vv
clus                           R0  R1  R2  RX
  AMP PEAK  8(6Q21) CNV        18   1   3   7
  AMP PEAK  8(6Q21) WILD-TYPE 107   6   9  18
D8V10, multiclass
    clus
vv   AMP PEAK  8(6Q21) CNV AMP PEAK  8(6Q21) WILD-TYPE
  R0                    18                         107
  R1                     1                           6
  R2                     3                           9
  RX                     7                          18
D8V11, continuous

Clustering(9) Variable = Amp Peak  9(7p22.3)
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  9(7P22.3) CNV       61 11
  AMP PEAK  9(7P22.3) WILD-TYPE 63  8
      AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE 
                           72                            71 
      AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE 
                           11                             8 
$`AMP PEAK  9(7P22.3) CNV`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.10         1.35         0.62         0.62         1.71         2.17 
TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 
        1.12         1.48         0.46         1.25         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.69         0.95         0.16         1.08         0.82         1.32 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8296 
        0.72         0.26         0.43         0.26         1.55         1.48 
TCGA-BR-8297 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4QI 
        0.76         0.39         0.72         0.53         0.23         0.49 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 
        0.69         0.49        20.02        27.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4460 TCGA-CG-4466 
        8.05        54.05         4.01        14.01        21.99        18.94 
TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5730 
        7.07         1.02         1.02        12.03        28.96         4.01 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 
       21.07         7.99         3.58         4.54         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 
        8.19         6.61         1.68         3.65         4.04         2.93 
TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        4.27         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
        3.02         3.58         1.02         0.56        26.43         3.55 

$`AMP PEAK  9(7P22.3) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        0.99         1.22         0.66         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 
        1.22         0.13         0.16         4.54         0.99         0.69 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8291 TCGA-BR-8592 
        0.69         0.95         0.49         0.46         1.18         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.59         0.92         0.79         0.79         0.43         0.13 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 
        0.10         0.72         2.24         0.82         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4306 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
        0.07         3.02         1.02        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 
       12.03         1.02         8.98        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-6519 
       15.02        31.04        65.10        55.04         8.65        15.65 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6817 TCGA-EQ-5647 
        6.90         0.69         5.95         4.14         4.70         0.62 
TCGA-EQ-8122 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 TCGA-IP-7968 
        7.79        59.05         5.03         6.87         2.53 

      AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE 
                        1.615                         1.020 
[1] "0.1 - 72.2 (1.6)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK  9(7P22.3) CNV" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK  9(7P22.3) WILD-TYPE" "AMP PEAK  9(7P22.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK  9(7P22.3) CNV"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK  9(7P22.3) WILD-TYPE"       "AMP PEAK  9(7P22.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK  9(7P22.3) WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7P22.3) CNV         32   60
  AMP PEAK  9(7P22.3) WILD-TYPE   40   48
        clus
vv       AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE
  FEMALE                      32                            40
  MALE                        60                            48
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK  9(7P22.3) CNV                                           2
  AMP PEAK  9(7P22.3) WILD-TYPE                                     8
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  9(7P22.3) CNV                                                           10
  AMP PEAK  9(7P22.3) WILD-TYPE                                                      6
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  9(7P22.3) CNV                                                                       6
  AMP PEAK  9(7P22.3) WILD-TYPE                                                                 2
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK  9(7P22.3) CNV                                                              1
  AMP PEAK  9(7P22.3) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK  9(7P22.3) CNV                                              1
  AMP PEAK  9(7P22.3) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  9(7P22.3) CNV                                           9
  AMP PEAK  9(7P22.3) WILD-TYPE                                     7
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  9(7P22.3) CNV                                                           35
  AMP PEAK  9(7P22.3) WILD-TYPE                                                     38
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  9(7P22.3) CNV                                                       2
  AMP PEAK  9(7P22.3) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  9(7P22.3) CNV                                                        1
  AMP PEAK  9(7P22.3) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  9(7P22.3) CNV                                                      7
  AMP PEAK  9(7P22.3) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  9(7P22.3) CNV                                                                           17
  AMP PEAK  9(7P22.3) WILD-TYPE                                                                     11
D9V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  9(7P22.3) CNV        4 24 27  9
  AMP PEAK  9(7P22.3) WILD-TYPE  2 28 29  9
D9V5, multiclass
    clus
vv   AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE
  T1                       4                             2
  T2                      24                            28
  T3                      27                            29
  T4                       9                             9
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  9(7P22.3) CNV       20 25 13  8
  AMP PEAK  9(7P22.3) WILD-TYPE 24 24 10  7
D9V6, multiclass
    clus
vv   AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE
  N0                      20                            24
  N1                      25                            24
  N2                      13                            10
  N3                       8                             7
                               vv
clus                            M0 M1 MX
  AMP PEAK  9(7P22.3) CNV       61  6  5
  AMP PEAK  9(7P22.3) WILD-TYPE 57 10  3
D9V7, multiclass
    clus
vv   AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE
  M0                      61                            57
  M1                       6                            10
  MX                       5                             3
                               vv
clus                             I II III IV
  AMP PEAK  9(7P22.3) CNV       14 16  21 12
  AMP PEAK  9(7P22.3) WILD-TYPE 10 21  18 14
D9V8, multiclass
     clus
vv    AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE
  I                        14                            10
  II                       16                            21
  III                      21                            18
  IV                       12                            14
D9V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7P22.3) CNV          2   90
  AMP PEAK  9(7P22.3) WILD-TYPE    3   85
     clus
vv    AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE
  NO                        2                             3
  YES                      90                            85
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  9(7P22.3) CNV       67  4  5 12
  AMP PEAK  9(7P22.3) WILD-TYPE 58  3  7 13
D9V10, multiclass
    clus
vv   AMP PEAK  9(7P22.3) CNV AMP PEAK  9(7P22.3) WILD-TYPE
  R0                      67                            58
  R1                       4                             3
  R2                       5                             7
  RX                      12                            13
D9V11, continuous

Clustering(10) Variable = Amp Peak 10(7p11.2)
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(7P11.2) CNV       56 10
  AMP PEAK 10(7P11.2) WILD-TYPE 68  9
      AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE 
                           66                            77 
      AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE 
                           10                             9 
$`AMP PEAK 10(7P11.2) CNV`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.10         1.35         0.62         0.62         1.71         2.17 
TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7717 
        1.12         1.48         0.46         1.25         1.05         0.69 
TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8284 
        0.95         0.16         1.08         0.82         0.69         0.72 
TCGA-BR-8285 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-A4IY TCGA-BR-A4J1 
        0.26         1.55         1.48         0.76         0.39         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5801 
        0.79         0.53         0.23         0.49         0.69         0.49 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4460 
       20.02        27.02        15.95        52.96         4.01        21.99 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5724 
       18.94         7.07        12.00         1.02         1.02        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 
       28.96        31.04        21.07         7.99         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 
        9.80         9.63         8.19         6.61         1.68         3.65 
TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        2.93         4.27         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
        0.20         3.02         1.02         0.56        26.43         3.55 

$`AMP PEAK 10(7P11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        0.99         1.22         0.66         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.22         0.13         0.82         0.16         4.54         0.99 
TCGA-BR-7957 TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8286 
        0.69         1.32         0.95         0.49         0.46         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        0.26         1.18         0.20         0.59         0.92         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5798 
        0.43         0.13         0.10         0.72         2.24         0.82 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4306 TCGA-CG-4437 
        0.36         0.30         0.07         3.02         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       54.05        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
        1.02         8.98         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5728 
        0.99         5.98         0.95        70.06        15.02        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 
        4.01        55.04         8.65        15.65         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-EQ-5647 TCGA-EQ-8122 
        5.95         4.14         4.70         4.04         0.62         7.79 
TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 TCGA-IP-7968 
        3.58        59.05         5.03         6.87         2.53 

      AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE 
                        1.515                         1.020 
[1] "0.1 - 72.2 (1.5)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 10(7P11.2) CNV" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 10(7P11.2) WILD-TYPE" "AMP PEAK 10(7P11.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK 10(7P11.2) CNV"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 10(7P11.2) WILD-TYPE"       "AMP PEAK 10(7P11.2) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 10(7P11.2) WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) CNV         30   55
  AMP PEAK 10(7P11.2) WILD-TYPE   42   53
        clus
vv       AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE
  FEMALE                      30                            42
  MALE                        55                            53
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 10(7P11.2) CNV                                           3
  AMP PEAK 10(7P11.2) WILD-TYPE                                     7
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 10(7P11.2) CNV                                                            8
  AMP PEAK 10(7P11.2) WILD-TYPE                                                      8
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 10(7P11.2) CNV                                                                       6
  AMP PEAK 10(7P11.2) WILD-TYPE                                                                 2
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 10(7P11.2) CNV                                                              1
  AMP PEAK 10(7P11.2) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 10(7P11.2) CNV                                              1
  AMP PEAK 10(7P11.2) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 10(7P11.2) CNV                                           7
  AMP PEAK 10(7P11.2) WILD-TYPE                                     9
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 10(7P11.2) CNV                                                           33
  AMP PEAK 10(7P11.2) WILD-TYPE                                                     40
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 10(7P11.2) CNV                                                       2
  AMP PEAK 10(7P11.2) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 10(7P11.2) CNV                                                        1
  AMP PEAK 10(7P11.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 10(7P11.2) CNV                                                      7
  AMP PEAK 10(7P11.2) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 10(7P11.2) CNV                                                                           14
  AMP PEAK 10(7P11.2) WILD-TYPE                                                                     14
D10V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 10(7P11.2) CNV        4 20 28  7
  AMP PEAK 10(7P11.2) WILD-TYPE  2 32 28 11
D10V5, multiclass
    clus
vv   AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE
  T1                       4                             2
  T2                      20                            32
  T3                      28                            28
  T4                       7                            11
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 10(7P11.2) CNV       21 23 11  6
  AMP PEAK 10(7P11.2) WILD-TYPE 23 26 12  9
D10V6, multiclass
    clus
vv   AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE
  N0                      21                            23
  N1                      23                            26
  N2                      11                            12
  N3                       6                             9
                               vv
clus                            M0 M1 MX
  AMP PEAK 10(7P11.2) CNV       57  5  4
  AMP PEAK 10(7P11.2) WILD-TYPE 61 11  4
D10V7, multiclass
    clus
vv   AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE
  M0                      57                            61
  M1                       5                            11
  MX                       4                             4
                               vv
clus                             I II III IV
  AMP PEAK 10(7P11.2) CNV       14 16  19  9
  AMP PEAK 10(7P11.2) WILD-TYPE 10 21  20 17
D10V8, multiclass
     clus
vv    AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE
  I                        14                            10
  II                       16                            21
  III                      19                            20
  IV                        9                            17
D10V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(7P11.2) CNV          1   84
  AMP PEAK 10(7P11.2) WILD-TYPE    4   91
     clus
vv    AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE
  NO                        1                             4
  YES                      84                            91
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 10(7P11.2) CNV       62  4  4 11
  AMP PEAK 10(7P11.2) WILD-TYPE 63  3  8 14
D10V10, multiclass
    clus
vv   AMP PEAK 10(7P11.2) CNV AMP PEAK 10(7P11.2) WILD-TYPE
  R0                      62                            63
  R1                       4                             3
  R2                       4                             8
  RX                      11                            14
D10V11, continuous

Clustering(11) Variable = Amp Peak 11(7q21.2)
D11V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 11(7Q21.2) CNV       58 10
  AMP PEAK 11(7Q21.2) WILD-TYPE 66  9
      AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE 
                           68                            75 
      AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE 
                           10                             9 
$`AMP PEAK 11(7Q21.2) CNV`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
        0.10         1.35         0.82         0.62         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 
        2.17         1.12         1.48         0.46         1.25         1.05 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8295 
        0.16         1.08         0.82         0.72         0.26         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
        1.48         0.76         0.39         0.72         0.79         0.53 
TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 
        0.23         0.72         0.69         0.49        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
       27.02        15.95        52.96        54.05         4.01        14.01 
TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5718 
       12.03        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5733 TCGA-D7-5578 
       12.03        15.02        28.96        31.04        21.07         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 
        4.54         9.80         9.63         8.19         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-F1-6177 TCGA-F1-6874 
        4.14         1.68         3.65         4.70         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8631 
       72.23         0.39         0.20         3.58         1.02         0.56 
TCGA-HJ-7597 TCGA-IN-7808 
       26.43         3.55 

$`AMP PEAK 11(7Q21.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6707 
        5.62         0.95         1.41         1.35         0.85         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        1.22         0.66         0.76         0.66         0.26         1.22 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        0.13         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        0.95         0.69         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8592 TCGA-BR-A4IU 
        0.46         0.43         0.26         1.18         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4QI 
        0.92         0.79         0.43         0.13         0.10         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4306 
        2.24         0.82         0.36         0.30         0.07         1.02 
TCGA-CG-4437 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 
        8.05        29.98        47.05        19.07        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        8.98         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
        5.98         0.95        70.06        65.10         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 
        7.99         8.65        15.65         6.90         0.69         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7916 TCGA-FP-8209 
        2.93         4.27         0.62         7.79         3.02        59.05 
TCGA-FP-8210 TCGA-IN-7806 TCGA-IP-7968 
        5.03         6.87         2.53 

      AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE 
                         1.86                          1.02 
[1] "0.1 - 72.2 (1.9)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 11(7Q21.2) CNV" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 11(7Q21.2) WILD-TYPE" "AMP PEAK 11(7Q21.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "AMP PEAK 11(7Q21.2) CNV"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 11(7Q21.2) WILD-TYPE"       "AMP PEAK 11(7Q21.2) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 11(7Q21.2) WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7Q21.2) CNV         28   58
  AMP PEAK 11(7Q21.2) WILD-TYPE   44   50
        clus
vv       AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE
  FEMALE                      28                            44
  MALE                        58                            50
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 11(7Q21.2) CNV                                           2
  AMP PEAK 11(7Q21.2) WILD-TYPE                                     8
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 11(7Q21.2) CNV                                                            8
  AMP PEAK 11(7Q21.2) WILD-TYPE                                                      8
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 11(7Q21.2) CNV                                                                       5
  AMP PEAK 11(7Q21.2) WILD-TYPE                                                                 3
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 11(7Q21.2) CNV                                                              1
  AMP PEAK 11(7Q21.2) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 11(7Q21.2) CNV                                              1
  AMP PEAK 11(7Q21.2) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 11(7Q21.2) CNV                                           9
  AMP PEAK 11(7Q21.2) WILD-TYPE                                     7
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 11(7Q21.2) CNV                                                           33
  AMP PEAK 11(7Q21.2) WILD-TYPE                                                     40
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 11(7Q21.2) CNV                                                       3
  AMP PEAK 11(7Q21.2) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 11(7Q21.2) CNV                                                        2
  AMP PEAK 11(7Q21.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 11(7Q21.2) CNV                                                      6
  AMP PEAK 11(7Q21.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 11(7Q21.2) CNV                                                                           14
  AMP PEAK 11(7Q21.2) WILD-TYPE                                                                     14
D11V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 11(7Q21.2) CNV        4 24 26  8
  AMP PEAK 11(7Q21.2) WILD-TYPE  2 28 30 10
D11V5, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE
  T1                       4                             2
  T2                      24                            28
  T3                      26                            30
  T4                       8                            10
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 11(7Q21.2) CNV       21 20 14  8
  AMP PEAK 11(7Q21.2) WILD-TYPE 23 29  9  7
D11V6, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE
  N0                      21                            23
  N1                      20                            29
  N2                      14                             9
  N3                       8                             7
                               vv
clus                            M0 M1 MX
  AMP PEAK 11(7Q21.2) CNV       58  5  6
  AMP PEAK 11(7Q21.2) WILD-TYPE 60 11  2
D11V7, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE
  M0                      58                            60
  M1                       5                            11
  MX                       6                             2
                               vv
clus                             I II III IV
  AMP PEAK 11(7Q21.2) CNV       14 17  20  9
  AMP PEAK 11(7Q21.2) WILD-TYPE 10 20  19 17
D11V8, multiclass
     clus
vv    AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE
  I                        14                            10
  II                       17                            20
  III                      20                            19
  IV                        9                            17
D11V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(7Q21.2) CNV          2   84
  AMP PEAK 11(7Q21.2) WILD-TYPE    3   91
     clus
vv    AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE
  NO                        2                             3
  YES                      84                            91
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 11(7Q21.2) CNV       65  3  4 11
  AMP PEAK 11(7Q21.2) WILD-TYPE 60  4  8 14
D11V10, multiclass
    clus
vv   AMP PEAK 11(7Q21.2) CNV AMP PEAK 11(7Q21.2) WILD-TYPE
  R0                      65                            60
  R1                       3                             4
  R2                       4                             8
  RX                      11                            14
D11V11, continuous

Clustering(12) Variable = Amp Peak 12(8p23.1)
D12V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 12(8P23.1) CNV       44  6
  AMP PEAK 12(8P23.1) WILD-TYPE 80 13
      AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE 
                           50                            93 
      AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE 
                            6                            13 
$`AMP PEAK 12(8P23.1) CNV`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6705 
        5.62         0.95         1.41         1.35         1.35         1.71 
TCGA-BR-6707 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7704 TCGA-BR-7707 
        0.99         0.76         0.66         0.26         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7957 TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8284 TCGA-BR-8289 
        0.69         0.69         1.32         0.95         0.72         0.26 
TCGA-BR-8297 TCGA-BR-A4IU TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-BR-A4QL 
        0.76         0.59         0.79         0.43         0.10         2.24 
TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4305 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 
        0.69         0.07        15.95        14.01        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5716 TCGA-CG-5722 
        1.02        18.94         7.07        12.00         1.02         0.95 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6524 
       28.96        65.10        21.07         3.58         4.54         0.69 
TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-FP-7829 
        4.14         4.70         4.04         2.93         4.27         0.20 
TCGA-FP-8099 TCGA-HJ-7597 
        1.02        26.43 

$`AMP PEAK 12(8P23.1) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 
        0.10         0.85         0.82         0.62         0.62         2.17 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.22         0.66         1.12         1.22         1.48         0.46 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        1.05         0.82         0.16         4.54         0.99         0.95 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8081 
        0.16         1.08         0.82         0.69         0.49         0.46 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8592 
        0.26         0.43         1.18         1.55         1.48         0.20 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 
        0.92         0.39         0.79         0.72         0.53         0.13 
TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.23         0.72         0.49         0.82         0.36         0.49 
TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 
        0.30        20.02         3.02        27.02         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
        8.05        54.05         4.01        29.98        47.05        19.07 
TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        8.98         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5727 
        0.99         5.98        70.06        12.03        15.02        31.04 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 
        4.01        55.04         7.99         8.65         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 
        9.63         8.19         6.90         5.95         6.61         1.68 
TCGA-D7-6815 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        3.65         0.62         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 
        0.39         3.02         3.58        59.05         5.03         0.56 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

      AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE 
                         0.07                          0.10 
      AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE 
                        65.10                         72.23 
      AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE 
                        1.285                         1.220 
[1] "0.1 - 65.1 (1.3)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 12(8P23.1) CNV"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "AMP PEAK 12(8P23.1) CNV" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 12(8P23.1) WILD-TYPE"       "AMP PEAK 12(8P23.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 12(8P23.1) WILD-TYPE" "AMP PEAK 12(8P23.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 12(8P23.1) WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8P23.1) CNV         33   37
  AMP PEAK 12(8P23.1) WILD-TYPE   39   71
        clus
vv       AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE
  FEMALE                      33                            39
  MALE                        37                            71
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 12(8P23.1) CNV                                           3
  AMP PEAK 12(8P23.1) WILD-TYPE                                     7
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 12(8P23.1) CNV                                                            5
  AMP PEAK 12(8P23.1) WILD-TYPE                                                     11
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 12(8P23.1) CNV                                                                       2
  AMP PEAK 12(8P23.1) WILD-TYPE                                                                 6
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 12(8P23.1) CNV                                                              1
  AMP PEAK 12(8P23.1) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 12(8P23.1) CNV                                              1
  AMP PEAK 12(8P23.1) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 12(8P23.1) CNV                                           5
  AMP PEAK 12(8P23.1) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 12(8P23.1) CNV                                                           29
  AMP PEAK 12(8P23.1) WILD-TYPE                                                     44
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 12(8P23.1) CNV                                                       4
  AMP PEAK 12(8P23.1) WILD-TYPE                                                 3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 12(8P23.1) CNV                                                        1
  AMP PEAK 12(8P23.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 12(8P23.1) CNV                                                      4
  AMP PEAK 12(8P23.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 12(8P23.1) CNV                                                                           13
  AMP PEAK 12(8P23.1) WILD-TYPE                                                                     15
D12V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 12(8P23.1) CNV        3 20 21  8
  AMP PEAK 12(8P23.1) WILD-TYPE  3 32 35 10
D12V5, multiclass
    clus
vv   AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE
  T1                       3                             3
  T2                      20                            32
  T3                      21                            35
  T4                       8                            10
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 12(8P23.1) CNV       17 20  9  5
  AMP PEAK 12(8P23.1) WILD-TYPE 27 29 14 10
D12V6, multiclass
    clus
vv   AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE
  N0                      17                            27
  N1                      20                            29
  N2                       9                            14
  N3                       5                            10
                               vv
clus                            M0 M1 MX
  AMP PEAK 12(8P23.1) CNV       51  5  2
  AMP PEAK 12(8P23.1) WILD-TYPE 67 11  6
D12V7, multiclass
    clus
vv   AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE
  M0                      51                            67
  M1                       5                            11
  MX                       2                             6
                               vv
clus                             I II III IV
  AMP PEAK 12(8P23.1) CNV        8 18  13 10
  AMP PEAK 12(8P23.1) WILD-TYPE 16 19  26 16
D12V8, multiclass
     clus
vv    AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE
  I                         8                            16
  II                       18                            19
  III                      13                            26
  IV                       10                            16
D12V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(8P23.1) CNV          4   66
  AMP PEAK 12(8P23.1) WILD-TYPE    1  109
     clus
vv    AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE
  NO                        4                             1
  YES                      66                           109
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 12(8P23.1) CNV       47  3  4 14
  AMP PEAK 12(8P23.1) WILD-TYPE 78  4  8 11
D12V10, multiclass
    clus
vv   AMP PEAK 12(8P23.1) CNV AMP PEAK 12(8P23.1) WILD-TYPE
  R0                      47                            78
  R1                       3                             4
  R2                       4                             8
  RX                      14                            11
D12V11, continuous

Clustering(13) Variable = Amp Peak 13(8q24.21)
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(8Q24.21) CNV       82 13
  AMP PEAK 13(8Q24.21) WILD-TYPE 42  6
      AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE 
                            95                             48 
      AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE 
                            13                              6 
$`AMP PEAK 13(8Q24.21) CNV`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6565 TCGA-BR-6705 
        5.62         0.95         1.41         1.35         0.62         1.71 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        0.99         1.22         1.12         0.76         0.66         0.26 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        4.54         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8284 TCGA-BR-8286 TCGA-BR-8289 
        0.69         0.95         0.49         0.72         0.43         0.26 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-A4IU TCGA-BR-A4J1 TCGA-BR-A4J2 
        1.55         1.48         0.76         0.59         0.72         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5800 TCGA-CD-5802 
        0.43         0.10         0.49         2.24         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
        0.07        20.02         3.02        15.95        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02        18.94         7.07        12.00 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 
        6.94         1.02         0.95        12.03        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 
       65.10         4.01        55.04        21.07         7.99         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        4.54         9.80         9.63         0.69         5.95         6.61 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        1.68         3.65         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        0.62         7.79         6.54        72.23         0.39         0.20 
TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
        1.02         0.56        26.43         3.55         2.53 

$`AMP PEAK 13(8Q24.21) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 
        0.10         1.35         0.85         0.82         0.62         2.17 
TCGA-BR-6710 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-8060 
        0.66         1.22         0.46         0.16         0.99         1.32 
TCGA-BR-8081 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8592 TCGA-BR-A4IV TCGA-BR-A4IY 
        0.46         0.26         1.18         0.20         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CD-5798 
        0.79         0.53         0.13         0.23         0.72         0.82 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4465 TCGA-CG-4474 
        0.69         0.49        27.02         1.02         8.98         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 
        1.02         1.02         1.02         0.99         5.98        70.06 
TCGA-CG-5725 TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6527 
       15.02         8.65        15.65         8.19         6.90         4.14 
TCGA-F1-6874 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 
        2.01         3.02         3.58        59.05         5.03         6.87 

      AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE 
                          0.07                           0.10 
      AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE 
                         72.23                          70.06 
      AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE 
                          1.55                           1.02 
[1] "0.1 - 72.2 (1.6)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7958                     TCGA-BR-7959 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7958                     TCGA-BR-7959 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-7958                     TCGA-BR-7959 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 13(8Q24.21) CNV" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 13(8Q24.21) WILD-TYPE" "AMP PEAK 13(8Q24.21) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 13(8Q24.21) CNV"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 13(8Q24.21) WILD-TYPE"       "AMP PEAK 13(8Q24.21) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 13(8Q24.21) CNV" 
[1] "hr=" "1.4"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8Q24.21) CNV         50   74
  AMP PEAK 13(8Q24.21) WILD-TYPE   22   34
        clus
vv       AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE
  FEMALE                       50                             22
  MALE                         74                             34
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 13(8Q24.21) CNV                                           3
  AMP PEAK 13(8Q24.21) WILD-TYPE                                     7
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 13(8Q24.21) CNV                                                            9
  AMP PEAK 13(8Q24.21) WILD-TYPE                                                      7
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 13(8Q24.21) CNV                                                                       7
  AMP PEAK 13(8Q24.21) WILD-TYPE                                                                 1
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 13(8Q24.21) CNV                                                              3
  AMP PEAK 13(8Q24.21) WILD-TYPE                                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 13(8Q24.21) CNV                                              1
  AMP PEAK 13(8Q24.21) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 13(8Q24.21) CNV                                           8
  AMP PEAK 13(8Q24.21) WILD-TYPE                                     8
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 13(8Q24.21) CNV                                                           53
  AMP PEAK 13(8Q24.21) WILD-TYPE                                                     20
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 13(8Q24.21) CNV                                                       5
  AMP PEAK 13(8Q24.21) WILD-TYPE                                                 2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 13(8Q24.21) CNV                                                        1
  AMP PEAK 13(8Q24.21) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 13(8Q24.21) CNV                                                      8
  AMP PEAK 13(8Q24.21) WILD-TYPE                                                2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 13(8Q24.21) CNV                                                                           22
  AMP PEAK 13(8Q24.21) WILD-TYPE                                                                      6
D13V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 13(8Q24.21) CNV        5 35 41 11
  AMP PEAK 13(8Q24.21) WILD-TYPE  1 17 15  7
D13V5, multiclass
    clus
vv   AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE
  T1                        5                              1
  T2                       35                             17
  T3                       41                             15
  T4                       11                              7
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 13(8Q24.21) CNV       30 33 18 10
  AMP PEAK 13(8Q24.21) WILD-TYPE 14 16  5  5
D13V6, multiclass
    clus
vv   AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE
  N0                       30                             14
  N1                       33                             16
  N2                       18                              5
  N3                       10                              5
                                vv
clus                             M0 M1 MX
  AMP PEAK 13(8Q24.21) CNV       84 10  7
  AMP PEAK 13(8Q24.21) WILD-TYPE 34  6  1
D13V7, multiclass
    clus
vv   AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE
  M0                       84                             34
  M1                       10                              6
  MX                        7                              1
                                vv
clus                              I II III IV
  AMP PEAK 13(8Q24.21) CNV       15 29  25 18
  AMP PEAK 13(8Q24.21) WILD-TYPE  9  8  14  8
D13V8, multiclass
     clus
vv    AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE
  I                         15                              9
  II                        29                              8
  III                       25                             14
  IV                        18                              8
D13V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8Q24.21) CNV          3  121
  AMP PEAK 13(8Q24.21) WILD-TYPE    2   54
     clus
vv    AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE
  NO                         3                              2
  YES                      121                             54
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 13(8Q24.21) CNV       84  6  8 20
  AMP PEAK 13(8Q24.21) WILD-TYPE 41  1  4  5
D13V10, multiclass
    clus
vv   AMP PEAK 13(8Q24.21) CNV AMP PEAK 13(8Q24.21) WILD-TYPE
  R0                       84                             41
  R1                        6                              1
  R2                        8                              4
  RX                       20                              5
D13V11, continuous

Clustering(14) Variable = Amp Peak 14(9p24.1)
D14V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 14(9P24.1) CNV        20   3
  AMP PEAK 14(9P24.1) WILD-TYPE 104  16
      AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE 
                           23                           120 
      AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE 
                            3                            16 
$`AMP PEAK 14(9P24.1) CNV`
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-7707 TCGA-BR-8059 TCGA-BR-8080 
        2.17         0.99         1.22         0.13         0.82         0.49 
TCGA-BR-8285 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-A4IY TCGA-BR-A4J4 TCGA-BR-A4QI 
        0.26         0.26         1.55         0.39         0.53         0.49 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4460 TCGA-CG-4477 
        0.82         0.49        52.96         8.05        21.99         1.02 
TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 
        1.68         4.04         4.27         0.62        72.23 

$`AMP PEAK 14(9P24.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6710 
        0.85         0.82         0.62         0.62         1.71         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        0.46         1.25         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        4.54         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8286 
        1.32         0.69         0.95         0.46         0.72         0.43 
TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.18         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.79         0.72         0.79         0.43         0.13         0.23 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        0.10         0.72         2.24         0.69         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        3.65         4.70         2.93         7.79         6.54         2.01 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        0.39         0.20         3.02         3.58         1.02        59.05 
TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        5.03         0.56        26.43         6.87         3.55         2.53 

      AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE 
                         0.13                          0.07 
      AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE 
                         0.99                          1.35 
[1] "0.1 - 72.2 (1.0)" "0.1 - 70.1 (1.4)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 14(9P24.1) CNV"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 14(9P24.1) CNV"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 14(9P24.1) CNV"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 14(9P24.1) CNV"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 14(9P24.1) CNV"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 14(9P24.1) CNV"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 14(9P24.1) WILD-TYPE"       "AMP PEAK 14(9P24.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 14(9P24.1) CNV" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 14(9P24.1) WILD-TYPE" "AMP PEAK 14(9P24.1) WILD-TYPE" 
                   TCGA-IP-7968 
"AMP PEAK 14(9P24.1) WILD-TYPE" 
[1] "hr=" "1.4"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(9P24.1) CNV         13   17
  AMP PEAK 14(9P24.1) WILD-TYPE   59   91
        clus
vv       AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE
  FEMALE                      13                            59
  MALE                        17                            91
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 14(9P24.1) CNV                                           0
  AMP PEAK 14(9P24.1) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 14(9P24.1) CNV                                                            4
  AMP PEAK 14(9P24.1) WILD-TYPE                                                     12
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 14(9P24.1) CNV                                                                       3
  AMP PEAK 14(9P24.1) WILD-TYPE                                                                 5
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 14(9P24.1) CNV                                                              1
  AMP PEAK 14(9P24.1) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 14(9P24.1) CNV                                              0
  AMP PEAK 14(9P24.1) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 14(9P24.1) CNV                                           1
  AMP PEAK 14(9P24.1) WILD-TYPE                                    15
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 14(9P24.1) CNV                                                           12
  AMP PEAK 14(9P24.1) WILD-TYPE                                                     61
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 14(9P24.1) CNV                                                       2
  AMP PEAK 14(9P24.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 14(9P24.1) CNV                                                        0
  AMP PEAK 14(9P24.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 14(9P24.1) CNV                                                      2
  AMP PEAK 14(9P24.1) WILD-TYPE                                                8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 14(9P24.1) CNV                                                                            5
  AMP PEAK 14(9P24.1) WILD-TYPE                                                                     23
D14V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 14(9P24.1) CNV        2 10  7  2
  AMP PEAK 14(9P24.1) WILD-TYPE  4 42 49 16
D14V5, multiclass
    clus
vv   AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE
  T1                       2                             4
  T2                      10                            42
  T3                       7                            49
  T4                       2                            16
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 14(9P24.1) CNV       10  7  1  2
  AMP PEAK 14(9P24.1) WILD-TYPE 34 42 22 13
D14V6, multiclass
    clus
vv   AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE
  N0                      10                            34
  N1                       7                            42
  N2                       1                            22
  N3                       2                            13
                               vv
clus                            M0 M1 MX
  AMP PEAK 14(9P24.1) CNV       19  2  1
  AMP PEAK 14(9P24.1) WILD-TYPE 99 14  7
D14V7, multiclass
    clus
vv   AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE
  M0                      19                            99
  M1                       2                            14
  MX                       1                             7
                               vv
clus                             I II III IV
  AMP PEAK 14(9P24.1) CNV        8  4   4  3
  AMP PEAK 14(9P24.1) WILD-TYPE 16 33  35 23
D14V8, multiclass
     clus
vv    AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE
  I                         8                            16
  II                        4                            33
  III                       4                            35
  IV                        3                            23
D14V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(9P24.1) CNV          2   28
  AMP PEAK 14(9P24.1) WILD-TYPE    3  147
     clus
vv    AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE
  NO                        2                             3
  YES                      28                           147
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 14(9P24.1) CNV        20   2   2   4
  AMP PEAK 14(9P24.1) WILD-TYPE 105   5  10  21
D14V10, multiclass
    clus
vv   AMP PEAK 14(9P24.1) CNV AMP PEAK 14(9P24.1) WILD-TYPE
  R0                      20                           105
  R1                       2                             5
  R2                       2                            10
  RX                       4                            21
D14V11, continuous

Clustering(15) Variable = Amp Peak 15(9q34.3)
D15V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 15(9Q34.3) CNV       29  3
  AMP PEAK 15(9Q34.3) WILD-TYPE 95 16
      AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE 
                           32                           111 
      AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE 
                            3                            16 
$`AMP PEAK 15(9Q34.3) CNV`
TCGA-BR-6564 TCGA-BR-6707 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        0.82         0.99         1.48         1.25         0.13         1.05 
TCGA-BR-7717 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8080 TCGA-BR-8289 TCGA-BR-8295 
        0.69         1.08         1.32         0.49         0.26         1.55 
TCGA-BR-A4J4 TCGA-BR-A4J9 TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4301 TCGA-CG-4304 
        0.53         0.10         0.36         0.49         3.02        27.02 
TCGA-CG-4436 TCGA-CG-4449 TCGA-CG-4466 TCGA-CG-5718 TCGA-D7-5578 TCGA-D7-5579 
       52.96        19.07        18.94         1.02         3.58         4.54 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6875 
        6.61         1.68         4.04         2.93         0.62        72.23 
TCGA-HJ-7597 TCGA-IN-7808 
       26.43         3.55 

$`AMP PEAK 15(9Q34.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 
        0.85         0.62         0.62         1.71         2.17         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.46         0.82         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8081 
        0.69         0.16         0.82         0.69         0.95         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 
        0.72         0.26         0.43         1.18         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.79         0.43         0.13         0.23         0.72         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        2.24         0.82         0.69         0.30         0.07        20.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02         8.05        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        47.05        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       21.07         7.99         8.65         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 
        8.19         6.90         0.69         5.95         4.14         3.65 
TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 
        4.70         4.27         7.79         6.54         2.01         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 
        0.20         3.02         3.58         1.02        59.05         5.03 
TCGA-FP-8631 TCGA-IN-7806 TCGA-IP-7968 
        0.56         6.87         2.53 

      AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE 
                         1.40                          1.22 
[1] "0.1 - 72.2 (1.4)" "0.1 - 70.1 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 15(9Q34.3) CNV"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK 15(9Q34.3) CNV"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 15(9Q34.3) CNV"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK 15(9Q34.3) CNV"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 15(9Q34.3) CNV"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "AMP PEAK 15(9Q34.3) CNV"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 15(9Q34.3) CNV" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 15(9Q34.3) WILD-TYPE" "AMP PEAK 15(9Q34.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 15(9Q34.3) WILD-TYPE"       "AMP PEAK 15(9Q34.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 15(9Q34.3) WILD-TYPE" 
[1] "hr=" "2.4"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(9Q34.3) CNV         19   27
  AMP PEAK 15(9Q34.3) WILD-TYPE   53   81
        clus
vv       AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE
  FEMALE                      19                            53
  MALE                        27                            81
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 15(9Q34.3) CNV                                           0
  AMP PEAK 15(9Q34.3) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 15(9Q34.3) CNV                                                            4
  AMP PEAK 15(9Q34.3) WILD-TYPE                                                     12
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 15(9Q34.3) CNV                                                                       1
  AMP PEAK 15(9Q34.3) WILD-TYPE                                                                 7
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 15(9Q34.3) CNV                                                              2
  AMP PEAK 15(9Q34.3) WILD-TYPE                                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 15(9Q34.3) CNV                                              1
  AMP PEAK 15(9Q34.3) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 15(9Q34.3) CNV                                           3
  AMP PEAK 15(9Q34.3) WILD-TYPE                                    13
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 15(9Q34.3) CNV                                                           20
  AMP PEAK 15(9Q34.3) WILD-TYPE                                                     53
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 15(9Q34.3) CNV                                                       4
  AMP PEAK 15(9Q34.3) WILD-TYPE                                                 3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 15(9Q34.3) CNV                                                        1
  AMP PEAK 15(9Q34.3) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 15(9Q34.3) CNV                                                      4
  AMP PEAK 15(9Q34.3) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 15(9Q34.3) CNV                                                                            5
  AMP PEAK 15(9Q34.3) WILD-TYPE                                                                     23
D15V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 15(9Q34.3) CNV        2 12 16  4
  AMP PEAK 15(9Q34.3) WILD-TYPE  4 40 40 14
D15V5, multiclass
    clus
vv   AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE
  T1                       2                             4
  T2                      12                            40
  T3                      16                            40
  T4                       4                            14
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 15(9Q34.3) CNV       12 15  3  5
  AMP PEAK 15(9Q34.3) WILD-TYPE 32 34 20 10
D15V6, multiclass
    clus
vv   AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE
  N0                      12                            32
  N1                      15                            34
  N2                       3                            20
  N3                       5                            10
                               vv
clus                            M0 M1 MX
  AMP PEAK 15(9Q34.3) CNV       34  3  1
  AMP PEAK 15(9Q34.3) WILD-TYPE 84 13  7
D15V7, multiclass
    clus
vv   AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE
  M0                      34                            84
  M1                       3                            13
  MX                       1                             7
                               vv
clus                             I II III IV
  AMP PEAK 15(9Q34.3) CNV        7 13   7  5
  AMP PEAK 15(9Q34.3) WILD-TYPE 17 24  32 21
D15V8, multiclass
     clus
vv    AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE
  I                         7                            17
  II                       13                            24
  III                       7                            32
  IV                        5                            21
D15V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(9Q34.3) CNV          3   43
  AMP PEAK 15(9Q34.3) WILD-TYPE    2  132
     clus
vv    AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE
  NO                        3                             2
  YES                      43                           132
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 15(9Q34.3) CNV       32  2  2  7
  AMP PEAK 15(9Q34.3) WILD-TYPE 93  5 10 18
D15V10, multiclass
    clus
vv   AMP PEAK 15(9Q34.3) CNV AMP PEAK 15(9Q34.3) WILD-TYPE
  R0                      32                            93
  R1                       2                             5
  R2                       2                            10
  RX                       7                            18
D15V11, continuous

Clustering(16) Variable = Amp Peak 16(10q22.2)
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(10Q22.2) CNV       25  3
  AMP PEAK 16(10Q22.2) WILD-TYPE 99 16
      AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE 
                            28                            115 
      AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE 
                             3                             16 
$`AMP PEAK 16(10Q22.2) CNV`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7717 
        1.35         0.82         1.48         1.25         1.05         0.69 
TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8296 TCGA-BR-8297 
        0.82         0.69         0.43         0.26         1.48         0.76 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4444 
        0.39         0.72         0.72         0.49        20.02        47.05 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-5732 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6818 
       19.07        21.99        55.04        15.65         9.63         4.04 
TCGA-D7-6822 TCGA-F1-6875 TCGA-FP-8631 TCGA-IN-7808 
        4.27        72.23         0.56         3.55 

$`AMP PEAK 16(10Q22.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        0.46         0.13         0.82         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8078 
        0.95         0.69         0.16         1.08         1.32         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 
        0.49         0.46         0.72         0.26         1.18         1.55 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL 
        0.43         0.13         0.23         0.10         0.49         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.82         0.69         0.36         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
        4.01        14.01        29.98        12.03         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        4.01        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.80         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-5647 
        4.14         1.68         3.65         4.70         2.93         0.62 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        7.79         6.54         2.01         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7806 
        3.58         1.02        59.05         5.03        26.43         6.87 
TCGA-IP-7968 
        2.53 

      AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE 
                          0.26                           0.07 
      AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE 
                         72.23                          70.06 
      AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE 
                          1.30                           1.22 
[1] "0.3 - 72.2 (1.3)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-IP-7968 
"AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-IP-7968 
"AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 16(10Q22.2) CNV"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 16(10Q22.2) WILD-TYPE" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 16(10Q22.2) CNV" "AMP PEAK 16(10Q22.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 16(10Q22.2) WILD-TYPE"       "AMP PEAK 16(10Q22.2) CNV" 
                    TCGA-IP-7968 
"AMP PEAK 16(10Q22.2) WILD-TYPE" 
[1] "hr=" "2.6"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(10Q22.2) CNV         13   21
  AMP PEAK 16(10Q22.2) WILD-TYPE   59   87
        clus
vv       AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE
  FEMALE                       13                             59
  MALE                         21                             87
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 16(10Q22.2) CNV                                           1
  AMP PEAK 16(10Q22.2) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 16(10Q22.2) CNV                                                            4
  AMP PEAK 16(10Q22.2) WILD-TYPE                                                     12
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 16(10Q22.2) CNV                                                                       5
  AMP PEAK 16(10Q22.2) WILD-TYPE                                                                 3
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 16(10Q22.2) CNV                                                              0
  AMP PEAK 16(10Q22.2) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 16(10Q22.2) CNV                                              0
  AMP PEAK 16(10Q22.2) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 16(10Q22.2) CNV                                           3
  AMP PEAK 16(10Q22.2) WILD-TYPE                                    13
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 16(10Q22.2) CNV                                                           14
  AMP PEAK 16(10Q22.2) WILD-TYPE                                                     59
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 16(10Q22.2) CNV                                                       1
  AMP PEAK 16(10Q22.2) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 16(10Q22.2) CNV                                                        0
  AMP PEAK 16(10Q22.2) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 16(10Q22.2) CNV                                                      2
  AMP PEAK 16(10Q22.2) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 16(10Q22.2) CNV                                                                            3
  AMP PEAK 16(10Q22.2) WILD-TYPE                                                                     25
D16V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 16(10Q22.2) CNV        0  9 11  3
  AMP PEAK 16(10Q22.2) WILD-TYPE  6 43 45 15
D16V5, multiclass
    clus
vv   AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE
  T1                        0                              6
  T2                        9                             43
  T3                       11                             45
  T4                        3                             15
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 16(10Q22.2) CNV        6 11  4  3
  AMP PEAK 16(10Q22.2) WILD-TYPE 38 38 19 12
D16V6, multiclass
    clus
vv   AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE
  N0                        6                             38
  N1                       11                             38
  N2                        4                             19
  N3                        3                             12
                                vv
clus                             M0 M1 MX
  AMP PEAK 16(10Q22.2) CNV       21  2  1
  AMP PEAK 16(10Q22.2) WILD-TYPE 97 14  7
D16V7, multiclass
    clus
vv   AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE
  M0                       21                             97
  M1                        2                             14
  MX                        1                              7
                                vv
clus                              I II III IV
  AMP PEAK 16(10Q22.2) CNV        3  6   9  5
  AMP PEAK 16(10Q22.2) WILD-TYPE 21 31  30 21
D16V8, multiclass
     clus
vv    AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE
  I                          3                             21
  II                         6                             31
  III                        9                             30
  IV                         5                             21
D16V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(10Q22.2) CNV          2   32
  AMP PEAK 16(10Q22.2) WILD-TYPE    3  143
     clus
vv    AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE
  NO                         2                              3
  YES                       32                            143
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 16(10Q22.2) CNV       27  0  1  4
  AMP PEAK 16(10Q22.2) WILD-TYPE 98  7 11 21
D16V10, multiclass
    clus
vv   AMP PEAK 16(10Q22.2) CNV AMP PEAK 16(10Q22.2) WILD-TYPE
  R0                       27                             98
  R1                        0                              7
  R2                        1                             11
  RX                        4                             21
D16V11, continuous

Clustering(17) Variable = Amp Peak 17(10q26.13)
D17V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 17(10Q26.13) CNV       31  4
  AMP PEAK 17(10Q26.13) WILD-TYPE 93 15
      AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE 
                             35                             108 
      AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE 
                              4                              15 
$`AMP PEAK 17(10Q26.13) CNV`
TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 
        1.35         0.82         0.66         1.48         1.25         1.05 
TCGA-BR-7716 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8296 
        0.82         0.69         0.49         0.43         0.26         1.48 
TCGA-BR-8297 TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4304 
        0.76         0.72         0.72         0.49        20.02        27.02 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5730 
       29.98        19.07         7.07        12.00         1.02         4.01 
TCGA-CG-5732 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6818 
       55.04        15.65         9.63         6.61         1.68         4.04 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-8099 
        0.62         7.79        72.23         0.39         1.02 

$`AMP PEAK 17(10Q26.13) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        0.66         1.12         0.76         0.26         1.22         0.46 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.13         0.69         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8078 
        0.69         0.16         1.08         0.82         1.32         0.95 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8592 
        0.46         0.72         0.26         1.18         1.55         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL 
        0.43         0.13         0.23         0.10         0.49         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.82         0.69         0.36         0.30         0.07         3.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       14.01        47.05        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
       18.94         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       28.96        31.04        65.10        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        3.58         4.54         9.80         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 
        5.95         4.14         3.65         4.70         2.93         4.27 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 
        6.54         2.01         0.20         3.02         3.58        59.05 
TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        5.03         0.56        26.43         6.87         3.55         2.53 

      AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE 
                           0.26                            0.07 
      AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE 
                          72.23                           70.06 
      AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE 
                           1.35                            1.22 
[1] "0.3 - 72.2 (1.4)" "0.1 - 70.1 (1.2)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4472                      TCGA-CG-4474 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4472                      TCGA-CG-4474 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-4472                      TCGA-CG-4474 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "AMP PEAK 17(10Q26.13) CNV" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "AMP PEAK 17(10Q26.13) CNV"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"AMP PEAK 17(10Q26.13) WILD-TYPE"       "AMP PEAK 17(10Q26.13) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"AMP PEAK 17(10Q26.13) WILD-TYPE" "AMP PEAK 17(10Q26.13) WILD-TYPE" 
                     TCGA-IP-7968 
"AMP PEAK 17(10Q26.13) WILD-TYPE" 
[1] "hr=" "2"  
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(10Q26.13) CNV         19   24
  AMP PEAK 17(10Q26.13) WILD-TYPE   53   84
        clus
vv       AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE
  FEMALE                        19                              53
  MALE                          24                              84
                                 vv
clus                              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 17(10Q26.13) CNV                                           1
  AMP PEAK 17(10Q26.13) WILD-TYPE                                     9
                                 vv
clus                              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 17(10Q26.13) CNV                                                            4
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                     12
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 17(10Q26.13) CNV                                                                       4
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                                 4
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 17(10Q26.13) CNV                                                              1
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                        2
                                 vv
clus                              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 17(10Q26.13) CNV                                              0
  AMP PEAK 17(10Q26.13) WILD-TYPE                                        1
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 17(10Q26.13) CNV                                           3
  AMP PEAK 17(10Q26.13) WILD-TYPE                                    13
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 17(10Q26.13) CNV                                                           19
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                     54
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 17(10Q26.13) CNV                                                       1
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                 6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 17(10Q26.13) CNV                                                        0
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                  3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 17(10Q26.13) CNV                                                      3
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 17(10Q26.13) CNV                                                                            6
  AMP PEAK 17(10Q26.13) WILD-TYPE                                                                     22
D17V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 17(10Q26.13) CNV        1 12 13  4
  AMP PEAK 17(10Q26.13) WILD-TYPE  5 40 43 14
D17V5, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE
  T1                         1                               5
  T2                        12                              40
  T3                        13                              43
  T4                         4                              14
                                 vv
clus                              N0 N1 N2 N3
  AMP PEAK 17(10Q26.13) CNV       11 12  4  4
  AMP PEAK 17(10Q26.13) WILD-TYPE 33 37 19 11
D17V6, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE
  N0                        11                              33
  N1                        12                              37
  N2                         4                              19
  N3                         4                              11
                                 vv
clus                              M0 M1 MX
  AMP PEAK 17(10Q26.13) CNV       29  2  2
  AMP PEAK 17(10Q26.13) WILD-TYPE 89 14  6
D17V7, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE
  M0                        29                              89
  M1                         2                              14
  MX                         2                               6
                                 vv
clus                               I II III IV
  AMP PEAK 17(10Q26.13) CNV        6  8   8  8
  AMP PEAK 17(10Q26.13) WILD-TYPE 18 29  31 18
D17V8, multiclass
     clus
vv    AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE
  I                           6                              18
  II                          8                              29
  III                         8                              31
  IV                          8                              18
D17V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(10Q26.13) CNV          2   41
  AMP PEAK 17(10Q26.13) WILD-TYPE    3  134
     clus
vv    AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE
  NO                          2                               3
  YES                        41                             134
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 17(10Q26.13) CNV       32  1  2  6
  AMP PEAK 17(10Q26.13) WILD-TYPE 93  6 10 19
D17V10, multiclass
    clus
vv   AMP PEAK 17(10Q26.13) CNV AMP PEAK 17(10Q26.13) WILD-TYPE
  R0                        32                              93
  R1                         1                               6
  R2                         2                              10
  RX                         6                              19
D17V11, continuous

Clustering(18) Variable = Amp Peak 18(11p13)
D18V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 18(11P13) CNV       25  2
  AMP PEAK 18(11P13) WILD-TYPE 99 17
      AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE 
                          27                          116 
      AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE 
                           2                           17 
$`AMP PEAK 18(11P13) CNV`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7717 TCGA-BR-7901 
        0.10         1.41         1.35         0.82         0.69         0.95 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-A4IY 
        1.32         0.69         0.49         1.48         0.76         0.39 
TCGA-BR-A4J2 TCGA-BR-A4J8 TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4472 
        0.79         0.23        20.02        54.05        19.07        12.00 
TCGA-CG-5717 TCGA-CG-5722 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7916 
        6.94         0.95         4.27         0.62         7.79         3.02 
TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7808 
        1.02         0.56         3.55 

$`AMP PEAK 18(11P13) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 
        5.62         0.95         1.35         0.85         0.62         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        1.71         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        1.25         0.13         1.05         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8078 
        0.99         0.69         0.16         1.08         0.82         0.95 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 
        1.55         0.20         0.59         0.92         0.79         0.72 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.53         0.43         0.13         0.10         0.72         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        2.24         0.82         0.69         0.36         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.07         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 
        8.05         4.01        14.01        29.98        47.05        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 
       21.99         1.02         8.98        18.94         7.07         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         1.02         1.02         0.99         5.98 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.70         4.04         2.93         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 
        0.39         0.20         3.58        59.05         5.03        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

      AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE 
                        0.10                         0.07 
      AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE 
                       54.05                        72.23 
      AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE 
                        1.02                         1.30 
[1] "0.1 - 54.0 (1.0)" "0.1 - 72.2 (1.3)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "AMP PEAK 18(11P13) CNV"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 18(11P13) CNV"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "AMP PEAK 18(11P13) CNV"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 18(11P13) CNV"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "AMP PEAK 18(11P13) CNV"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 18(11P13) CNV"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 18(11P13) WILD-TYPE" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 18(11P13) CNV" "AMP PEAK 18(11P13) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 18(11P13) WILD-TYPE"       "AMP PEAK 18(11P13) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 18(11P13) WILD-TYPE" 
[1] "hr=" "1.2"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) CNV         14   21
  AMP PEAK 18(11P13) WILD-TYPE   58   87
        clus
vv       AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE
  FEMALE                     14                           58
  MALE                       21                           87
                              vv
clus                           STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 18(11P13) CNV                                           3
  AMP PEAK 18(11P13) WILD-TYPE                                     7
                              vv
clus                           STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 18(11P13) CNV                                                            4
  AMP PEAK 18(11P13) WILD-TYPE                                                     12
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 18(11P13) CNV                                                                       4
  AMP PEAK 18(11P13) WILD-TYPE                                                                 4
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 18(11P13) CNV                                                              1
  AMP PEAK 18(11P13) WILD-TYPE                                                        2
                              vv
clus                           STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 18(11P13) CNV                                              0
  AMP PEAK 18(11P13) WILD-TYPE                                        1
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 18(11P13) CNV                                           2
  AMP PEAK 18(11P13) WILD-TYPE                                    14
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 18(11P13) CNV                                                           15
  AMP PEAK 18(11P13) WILD-TYPE                                                     58
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 18(11P13) CNV                                                       2
  AMP PEAK 18(11P13) WILD-TYPE                                                 5
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 18(11P13) CNV                                                        0
  AMP PEAK 18(11P13) WILD-TYPE                                                  3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 18(11P13) CNV                                                      1
  AMP PEAK 18(11P13) WILD-TYPE                                                9
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 18(11P13) CNV                                                                            2
  AMP PEAK 18(11P13) WILD-TYPE                                                                     26
D18V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 18(11P13) CNV        0  5 10  5
  AMP PEAK 18(11P13) WILD-TYPE  6 47 46 13
D18V5, multiclass
    clus
vv   AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE
  T1                      0                            6
  T2                      5                           47
  T3                     10                           46
  T4                      5                           13
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 18(11P13) CNV        2 11  4  3
  AMP PEAK 18(11P13) WILD-TYPE 42 38 19 12
D18V6, multiclass
    clus
vv   AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE
  N0                      2                           42
  N1                     11                           38
  N2                      4                           19
  N3                      3                           12
                              vv
clus                           M0 M1 MX
  AMP PEAK 18(11P13) CNV       19  3  1
  AMP PEAK 18(11P13) WILD-TYPE 99 13  7
D18V7, multiclass
    clus
vv   AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE
  M0                     19                           99
  M1                      3                           13
  MX                      1                            7
                              vv
clus                            I II III IV
  AMP PEAK 18(11P13) CNV        2  4   6  7
  AMP PEAK 18(11P13) WILD-TYPE 22 33  33 19
D18V8, multiclass
     clus
vv    AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE
  I                        2                           22
  II                       4                           33
  III                      6                           33
  IV                       7                           19
D18V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(11P13) CNV          1   34
  AMP PEAK 18(11P13) WILD-TYPE    4  141
     clus
vv    AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE
  NO                       1                            4
  YES                     34                          141
                              vv
clus                            R0  R1  R2  RX
  AMP PEAK 18(11P13) CNV        23   2   2   5
  AMP PEAK 18(11P13) WILD-TYPE 102   5  10  20
D18V10, multiclass
    clus
vv   AMP PEAK 18(11P13) CNV AMP PEAK 18(11P13) WILD-TYPE
  R0                     23                          102
  R1                      2                            5
  R2                      2                           10
  RX                      5                           20
D18V11, continuous

Clustering(19) Variable = Amp Peak 19(11q13.3)
D19V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 19(11Q13.3) CNV        23   2
  AMP PEAK 19(11Q13.3) WILD-TYPE 101  17
      AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE 
                            25                            118 
      AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE 
                             2                             17 
$`AMP PEAK 19(11Q13.3) CNV`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-7704 TCGA-BR-7717 TCGA-BR-7901 TCGA-BR-8060 
        1.41         1.35         1.25         0.69         0.95         1.32 
TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8296 TCGA-BR-A4IY TCGA-BR-A4PF TCGA-BR-A4QI 
        0.69         0.49         1.48         0.39         0.72         0.49 
TCGA-CD-5799 TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        0.69        20.02        54.05        47.05        19.07        12.03 
TCGA-CG-4472 TCGA-CG-5722 TCGA-CG-5724 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-8099 
       12.00         0.95        12.03         7.79        72.23         1.02 
TCGA-FP-8631 
        0.56 

$`AMP PEAK 19(11Q13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 
        1.48         0.46         0.13         1.05         0.82         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        4.54         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.95         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.18         1.55         0.76         0.20         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.79         0.72         0.79         0.53         0.43         0.13 
TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.23         0.10         2.24         0.82         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.30         0.07         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 
       52.96         8.05         4.01        14.01        29.98        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98        18.94         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        5.95         6.61         4.14         1.68         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        0.39         0.20         3.02         3.58        59.05         5.03 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

      AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE 
                          0.39                           0.07 
      AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE 
                         72.23                          70.06 
      AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE 
                          1.32                           1.22 
[1] "0.4 - 72.2 (1.3)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 19(11Q13.3) CNV"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 19(11Q13.3) CNV"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 19(11Q13.3) CNV"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 19(11Q13.3) CNV"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 19(11Q13.3) CNV"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 19(11Q13.3) CNV"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 19(11Q13.3) WILD-TYPE"       "AMP PEAK 19(11Q13.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 19(11Q13.3) CNV" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 19(11Q13.3) WILD-TYPE" "AMP PEAK 19(11Q13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 19(11Q13.3) WILD-TYPE" 
[1] "hr=" "5"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q13.3) CNV         12   25
  AMP PEAK 19(11Q13.3) WILD-TYPE   60   83
        clus
vv       AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE
  FEMALE                       12                             60
  MALE                         25                             83
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 19(11Q13.3) CNV                                           0
  AMP PEAK 19(11Q13.3) WILD-TYPE                                    10
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 19(11Q13.3) CNV                                                            5
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                     11
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 19(11Q13.3) CNV                                                                       4
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                                 4
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 19(11Q13.3) CNV                                                              1
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 19(11Q13.3) CNV                                              0
  AMP PEAK 19(11Q13.3) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 19(11Q13.3) CNV                                           2
  AMP PEAK 19(11Q13.3) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 19(11Q13.3) CNV                                                           15
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                     58
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 19(11Q13.3) CNV                                                       3
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 19(11Q13.3) CNV                                                        0
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 19(11Q13.3) CNV                                                      0
  AMP PEAK 19(11Q13.3) WILD-TYPE                                               10
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 19(11Q13.3) CNV                                                                            5
  AMP PEAK 19(11Q13.3) WILD-TYPE                                                                     23
D19V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 19(11Q13.3) CNV        1  6 11  5
  AMP PEAK 19(11Q13.3) WILD-TYPE  5 46 45 13
D19V5, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE
  T1                        1                              5
  T2                        6                             46
  T3                       11                             45
  T4                        5                             13
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 19(11Q13.3) CNV        5 10  5  3
  AMP PEAK 19(11Q13.3) WILD-TYPE 39 39 18 12
D19V6, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE
  N0                        5                             39
  N1                       10                             39
  N2                        5                             18
  N3                        3                             12
                                vv
clus                             M0 M1 MX
  AMP PEAK 19(11Q13.3) CNV       24  2  1
  AMP PEAK 19(11Q13.3) WILD-TYPE 94 14  7
D19V7, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE
  M0                       24                             94
  M1                        2                             14
  MX                        1                              7
                                vv
clus                              I II III IV
  AMP PEAK 19(11Q13.3) CNV        2  7   6  7
  AMP PEAK 19(11Q13.3) WILD-TYPE 22 30  33 19
D19V8, multiclass
     clus
vv    AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE
  I                          2                             22
  II                         7                             30
  III                        6                             33
  IV                         7                             19
D19V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(11Q13.3) CNV          1   36
  AMP PEAK 19(11Q13.3) WILD-TYPE    4  139
     clus
vv    AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE
  NO                         1                              4
  YES                       36                            139
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 19(11Q13.3) CNV        25   2   2   6
  AMP PEAK 19(11Q13.3) WILD-TYPE 100   5  10  19
D19V10, multiclass
    clus
vv   AMP PEAK 19(11Q13.3) CNV AMP PEAK 19(11Q13.3) WILD-TYPE
  R0                       25                            100
  R1                        2                              5
  R2                        2                             10
  RX                        6                             19
D19V11, continuous

Clustering(20) Variable = Amp Peak 20(12p12.1)
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(12P12.1) CNV       34  4
  AMP PEAK 20(12P12.1) WILD-TYPE 90 15
      AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE 
                            38                            105 
      AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE 
                             4                             15 
$`AMP PEAK 20(12P12.1) CNV`
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-6801 TCGA-BR-7723 
        0.85         0.62         1.71         1.22         1.12         4.54 
TCGA-BR-7901 TCGA-BR-7959 TCGA-BR-8078 TCGA-BR-8295 TCGA-BR-8297 TCGA-BR-A4J1 
        0.95         1.08         0.95         1.55         0.76         0.72 
TCGA-BR-A4J2 TCGA-BR-A4PF TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4300 
        0.79         0.72         0.82         0.69         0.30        20.02 
TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5722 TCGA-CG-5724 
       47.05        21.99        12.00         1.02         0.95        12.03 
TCGA-CG-5727 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 
       31.04         3.58         9.80        15.65         8.19         6.61 
TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-5647 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 
        4.70         2.93         0.62         0.39         0.20         3.58 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

$`AMP PEAK 20(12P12.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6802 
        0.82         0.62         2.17         0.99         0.66         0.76 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 
        0.66         0.26         1.22         1.48         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 
        0.13         1.05         0.82         0.69         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8080 
        0.69         0.16         0.82         1.32         0.69         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8296 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        1.48         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI 
        0.53         0.43         0.13         0.23         0.10         0.49 
TCGA-BR-A4QL TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        2.24         0.36         0.49         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
       14.01        29.98        19.07        12.03         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       18.94         7.07         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        1.02         0.99         5.98        70.06        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 
        4.54         9.63         6.90         0.69         5.95         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        1.68         3.65         4.04         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 
        2.01        72.23         3.02         1.02        59.05         5.03 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 
        0.56        26.43         6.87 

      AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE 
                          0.20                           0.07 
      AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE 
                         47.05                          72.23 
      AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE 
                         1.385                          1.250 
[1] "0.2 - 47.0 (1.4)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 20(12P12.1) CNV"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 20(12P12.1) CNV"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 20(12P12.1) CNV"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "AMP PEAK 20(12P12.1) CNV" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK 20(12P12.1) WILD-TYPE" "AMP PEAK 20(12P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 20(12P12.1) WILD-TYPE"       "AMP PEAK 20(12P12.1) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 20(12P12.1) CNV" 
[1] "hr=" "1.1"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(12P12.1) CNV         15   29
  AMP PEAK 20(12P12.1) WILD-TYPE   57   79
        clus
vv       AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE
  FEMALE                       15                             57
  MALE                         29                             79
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 20(12P12.1) CNV                                           2
  AMP PEAK 20(12P12.1) WILD-TYPE                                     8
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 20(12P12.1) CNV                                                            4
  AMP PEAK 20(12P12.1) WILD-TYPE                                                     12
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 20(12P12.1) CNV                                                                       0
  AMP PEAK 20(12P12.1) WILD-TYPE                                                                 8
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 20(12P12.1) CNV                                                              1
  AMP PEAK 20(12P12.1) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 20(12P12.1) CNV                                              0
  AMP PEAK 20(12P12.1) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 20(12P12.1) CNV                                           7
  AMP PEAK 20(12P12.1) WILD-TYPE                                     9
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 20(12P12.1) CNV                                                           18
  AMP PEAK 20(12P12.1) WILD-TYPE                                                     55
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 20(12P12.1) CNV                                                       2
  AMP PEAK 20(12P12.1) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 20(12P12.1) CNV                                                        0
  AMP PEAK 20(12P12.1) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 20(12P12.1) CNV                                                      4
  AMP PEAK 20(12P12.1) WILD-TYPE                                                6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 20(12P12.1) CNV                                                                            4
  AMP PEAK 20(12P12.1) WILD-TYPE                                                                     24
D20V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 20(12P12.1) CNV        0  8 21  7
  AMP PEAK 20(12P12.1) WILD-TYPE  6 44 35 11
D20V5, multiclass
    clus
vv   AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE
  T1                        0                              6
  T2                        8                             44
  T3                       21                             35
  T4                        7                             11
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 20(12P12.1) CNV        7 12 12  6
  AMP PEAK 20(12P12.1) WILD-TYPE 37 37 11  9
D20V6, multiclass
    clus
vv   AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE
  N0                        7                             37
  N1                       12                             37
  N2                       12                             11
  N3                        6                              9
                                vv
clus                             M0 M1 MX
  AMP PEAK 20(12P12.1) CNV       28  6  3
  AMP PEAK 20(12P12.1) WILD-TYPE 90 10  5
D20V7, multiclass
    clus
vv   AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE
  M0                       28                             90
  M1                        6                             10
  MX                        3                              5
                                vv
clus                              I II III IV
  AMP PEAK 20(12P12.1) CNV        1  9  18  8
  AMP PEAK 20(12P12.1) WILD-TYPE 23 28  21 18
D20V8, multiclass
     clus
vv    AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE
  I                          1                             23
  II                         9                             28
  III                       18                             21
  IV                         8                             18
D20V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(12P12.1) CNV          0   44
  AMP PEAK 20(12P12.1) WILD-TYPE    5  131
     clus
vv    AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE
  NO                         0                              5
  YES                       44                            131
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 20(12P12.1) CNV       27  3  5  4
  AMP PEAK 20(12P12.1) WILD-TYPE 98  4  7 21
D20V10, multiclass
    clus
vv   AMP PEAK 20(12P12.1) CNV AMP PEAK 20(12P12.1) WILD-TYPE
  R0                       27                             98
  R1                        3                              4
  R2                        5                              7
  RX                        4                             21
D20V11, continuous

Clustering(21) Variable = Amp Peak 21(12q15)
D21V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 21(12Q15) CNV       32  4
  AMP PEAK 21(12Q15) WILD-TYPE 92 15
      AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE 
                          36                          107 
      AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE 
                           4                           15 
$`AMP PEAK 21(12Q15) CNV`
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-7723 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8077 
        0.85         0.62         4.54         1.08         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8295 TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4PF 
        0.95         1.55         0.72         0.53         0.13         0.72 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4444 TCGA-CG-4455 
        0.82         0.69         0.30         3.02        47.05        12.03 
TCGA-CG-4460 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5722 TCGA-CG-5725 TCGA-CG-5727 
       21.99        12.00         1.02         0.95        15.02        31.04 
TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 
       55.04         3.58         9.80        15.65         8.19         6.61 
TCGA-D7-6527 TCGA-D7-6817 TCGA-EQ-5647 TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7808 
        4.14         4.70         0.62         3.02         3.58         3.55 

$`AMP PEAK 21(12Q15) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         0.99         0.95         0.69         0.16 
TCGA-BR-8059 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.82         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        0.26         1.18         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J8 
        0.92         0.39         0.79         0.79         0.43         0.23 
TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 
        0.10         0.49         2.24         0.36         0.49         0.07 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4462 
       54.05         4.01        14.01        29.98        19.07         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        8.98        18.94         7.07         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         5.98        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       28.96        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 
        4.54         9.63         6.90         0.69         5.95         1.68 
TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        3.65         4.04         2.93         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8209 
        2.01        72.23         0.39         0.20         1.02        59.05 
TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        5.03         0.56        26.43         6.87         2.53 

      AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE 
                        0.13                         0.07 
      AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE 
                       55.04                        72.23 
      AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE 
                        3.02                         1.18 
[1] "0.1 - 55.0 (3.0)" "0.1 - 72.2 (1.2)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-6519                   TCGA-D7-6520 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-6519                   TCGA-D7-6520 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4455                   TCGA-CG-4460 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-6519                   TCGA-D7-6520 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 21(12Q15) CNV"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
      "AMP PEAK 21(12Q15) CNV" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
"AMP PEAK 21(12Q15) WILD-TYPE" "AMP PEAK 21(12Q15) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 21(12Q15) WILD-TYPE"       "AMP PEAK 21(12Q15) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 21(12Q15) WILD-TYPE" 
[1] "hr=" "1.3"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(12Q15) CNV         17   27
  AMP PEAK 21(12Q15) WILD-TYPE   55   81
        clus
vv       AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE
  FEMALE                     17                           55
  MALE                       27                           81
                              vv
clus                           STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 21(12Q15) CNV                                           1
  AMP PEAK 21(12Q15) WILD-TYPE                                     9
                              vv
clus                           STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 21(12Q15) CNV                                                            7
  AMP PEAK 21(12Q15) WILD-TYPE                                                      9
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 21(12Q15) CNV                                                                       1
  AMP PEAK 21(12Q15) WILD-TYPE                                                                 7
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 21(12Q15) CNV                                                              1
  AMP PEAK 21(12Q15) WILD-TYPE                                                        2
                              vv
clus                           STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 21(12Q15) CNV                                              0
  AMP PEAK 21(12Q15) WILD-TYPE                                        1
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 21(12Q15) CNV                                           6
  AMP PEAK 21(12Q15) WILD-TYPE                                    10
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 21(12Q15) CNV                                                           14
  AMP PEAK 21(12Q15) WILD-TYPE                                                     59
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 21(12Q15) CNV                                                       2
  AMP PEAK 21(12Q15) WILD-TYPE                                                 5
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 21(12Q15) CNV                                                        1
  AMP PEAK 21(12Q15) WILD-TYPE                                                  2
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 21(12Q15) CNV                                                      3
  AMP PEAK 21(12Q15) WILD-TYPE                                                7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 21(12Q15) CNV                                                                            5
  AMP PEAK 21(12Q15) WILD-TYPE                                                                     23
D21V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 21(12Q15) CNV        0 12 13  7
  AMP PEAK 21(12Q15) WILD-TYPE  6 40 43 11
D21V5, multiclass
    clus
vv   AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE
  T1                      0                            6
  T2                     12                           40
  T3                     13                           43
  T4                      7                           11
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 21(12Q15) CNV        8 11  8  6
  AMP PEAK 21(12Q15) WILD-TYPE 36 38 15  9
D21V6, multiclass
    clus
vv   AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE
  N0                      8                           36
  N1                     11                           38
  N2                      8                           15
  N3                      6                            9
                              vv
clus                           M0 M1 MX
  AMP PEAK 21(12Q15) CNV       26  6  2
  AMP PEAK 21(12Q15) WILD-TYPE 92 10  6
D21V7, multiclass
    clus
vv   AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE
  M0                     26                           92
  M1                      6                           10
  MX                      2                            6
                              vv
clus                            I II III IV
  AMP PEAK 21(12Q15) CNV        3 11   9  9
  AMP PEAK 21(12Q15) WILD-TYPE 21 26  30 17
D21V8, multiclass
     clus
vv    AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE
  I                        3                           21
  II                      11                           26
  III                      9                           30
  IV                       9                           17
D21V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 21(12Q15) CNV          2   42
  AMP PEAK 21(12Q15) WILD-TYPE    3  133
     clus
vv    AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE
  NO                       2                            3
  YES                     42                          133
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 21(12Q15) CNV       28  1  5  5
  AMP PEAK 21(12Q15) WILD-TYPE 97  6  7 20
D21V10, multiclass
    clus
vv   AMP PEAK 21(12Q15) CNV AMP PEAK 21(12Q15) WILD-TYPE
  R0                     28                           97
  R1                      1                            6
  R2                      5                            7
  RX                      5                           20
D21V11, continuous

Clustering(22) Variable = Amp Peak 22(13q12.3)
D22V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 22(13Q12.3) CNV       51  6
  AMP PEAK 22(13Q12.3) WILD-TYPE 73 13
      AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE 
                            57                             86 
      AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE 
                             6                             13 
$`AMP PEAK 22(13Q12.3) CNV`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6801 
        0.10         0.85         0.62         0.62         1.71         1.12 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8060 
        1.48         1.25         0.69         4.54         0.95         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8286 TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.69         0.95         0.49         0.43         0.72         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 
        0.43         0.23         0.10         0.72         0.69         0.36 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       20.02         3.02        15.95        52.96         8.05        54.05 
TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5719 TCGA-CG-5724 
       47.05         7.07        12.00         1.02         1.02        12.03 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
       31.04         4.01        55.04         7.99         8.65         3.58 
TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 
        9.80         8.19         0.69         6.61         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 
        4.04         2.93         0.62         7.79        72.23         0.39 
TCGA-FP-7829 TCGA-FP-8099 TCGA-IN-7808 
        0.20         1.02         3.55 

$`AMP PEAK 22(13Q12.3) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 
        2.17         0.99         1.22         0.66         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        0.26         1.22         0.46         0.13         1.05         0.82 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.16         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.46         0.72         0.26         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 
        0.79         0.53         0.13         0.49         2.24         0.82 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4440 
        0.49         0.30         0.07        27.02         1.02         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
       14.01        29.98        19.07        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        8.98        18.94         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 
       65.10        21.07         4.54        15.65         9.63         6.90 
TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 
        5.95         4.14         1.68         4.27         6.54         2.01 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 
        3.02         3.58        59.05         5.03         0.56        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

      AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE 
                          0.10                           0.07 
      AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE 
                         72.23                          70.06 
      AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE 
                          1.48                           1.20 
[1] "0.1 - 72.2 (1.5)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-IP-7968 
"AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-IP-7968 
"AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 22(13Q12.3) CNV"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 22(13Q12.3) CNV" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"AMP PEAK 22(13Q12.3) WILD-TYPE" "AMP PEAK 22(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 22(13Q12.3) WILD-TYPE"       "AMP PEAK 22(13Q12.3) CNV" 
                    TCGA-IP-7968 
"AMP PEAK 22(13Q12.3) WILD-TYPE" 
[1] "hr=" "1.9"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(13Q12.3) CNV         24   47
  AMP PEAK 22(13Q12.3) WILD-TYPE   48   61
        clus
vv       AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE
  FEMALE                       24                             48
  MALE                         47                             61
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 22(13Q12.3) CNV                                           1
  AMP PEAK 22(13Q12.3) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 22(13Q12.3) CNV                                                            8
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                      8
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 22(13Q12.3) CNV                                                                       2
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 22(13Q12.3) CNV                                                              2
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 22(13Q12.3) CNV                                              0
  AMP PEAK 22(13Q12.3) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 22(13Q12.3) CNV                                           9
  AMP PEAK 22(13Q12.3) WILD-TYPE                                     7
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 22(13Q12.3) CNV                                                           26
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                     47
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 22(13Q12.3) CNV                                                       2
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 22(13Q12.3) CNV                                                        1
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 22(13Q12.3) CNV                                                      6
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 22(13Q12.3) CNV                                                                           12
  AMP PEAK 22(13Q12.3) WILD-TYPE                                                                     16
D22V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 22(13Q12.3) CNV        1 23 20  9
  AMP PEAK 22(13Q12.3) WILD-TYPE  5 29 36  9
D22V5, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE
  T1                        1                              5
  T2                       23                             29
  T3                       20                             36
  T4                        9                              9
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 22(13Q12.3) CNV       13 18 10 11
  AMP PEAK 22(13Q12.3) WILD-TYPE 31 31 13  4
D22V6, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE
  N0                       13                             31
  N1                       18                             31
  N2                       10                             13
  N3                       11                              4
                                vv
clus                             M0 M1 MX
  AMP PEAK 22(13Q12.3) CNV       49  7  2
  AMP PEAK 22(13Q12.3) WILD-TYPE 69  9  6
D22V7, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE
  M0                       49                             69
  M1                        7                              9
  MX                        2                              6
                                vv
clus                              I II III IV
  AMP PEAK 22(13Q12.3) CNV        5 15  17 14
  AMP PEAK 22(13Q12.3) WILD-TYPE 19 22  22 12
D22V8, multiclass
     clus
vv    AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE
  I                          5                             19
  II                        15                             22
  III                       17                             22
  IV                        14                             12
D22V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(13Q12.3) CNV          2   69
  AMP PEAK 22(13Q12.3) WILD-TYPE    3  106
     clus
vv    AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE
  NO                         2                              3
  YES                       69                            106
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 22(13Q12.3) CNV       49  4  5  9
  AMP PEAK 22(13Q12.3) WILD-TYPE 76  3  7 16
D22V10, multiclass
    clus
vv   AMP PEAK 22(13Q12.3) CNV AMP PEAK 22(13Q12.3) WILD-TYPE
  R0                       49                             76
  R1                        4                              3
  R2                        5                              7
  RX                        9                             16
D22V11, continuous

Clustering(23) Variable = Amp Peak 23(13q22.1)
D23V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 23(13Q22.1) CNV       54  8
  AMP PEAK 23(13Q22.1) WILD-TYPE 70 11
      AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE 
                            62                             81 
      AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE 
                             8                             11 
$`AMP PEAK 23(13Q22.1) CNV`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6707 TCGA-BR-6801 
        0.10         0.85         0.62         0.62         0.99         1.12 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7723 
        1.48         1.25         1.05         0.82         0.69         4.54 
TCGA-BR-7901 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-A4IY TCGA-BR-A4J1 
        0.95         0.69         0.95         0.49         0.39         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-CD-5799 
        0.79         0.43         0.23         0.10         0.72         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.36         0.30        20.02        15.95         1.02        52.96 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       54.05         4.01        29.98         7.07        12.00         1.02 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5730 
        1.02         1.02         5.98        70.06        15.02         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6818 
        8.19         0.69         6.61         4.14         3.65         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7829 
        2.93         4.27         0.62         7.79        72.23         0.20 
TCGA-FP-8631 TCGA-IP-7968 
        0.56         2.53 

$`AMP PEAK 23(13Q22.1) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 
        1.71         2.17         1.22         0.66         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 
        0.26         1.22         0.46         0.13         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8081 
        0.69         0.16         1.08         0.82         1.32         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        1.48         0.76         0.20         0.59         0.92         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J6 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 
        0.53         0.13         0.49         2.24         0.82         0.49 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4444 
        0.07         3.02        27.02         8.05        14.01        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       19.07        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5722 TCGA-CG-5724 
        1.02         1.02         6.94         0.99         0.95        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-6519 TCGA-D7-6520 
       28.96        31.04        65.10        21.07        15.65         9.63 
TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6817 TCGA-F1-6177 TCGA-F1-6874 
        6.90         5.95         1.68         4.70         6.54         2.01 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 
        0.39         3.02         3.58         1.02        59.05         5.03 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       26.43         6.87         3.55 

      AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE 
                          0.10                           0.07 
      AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE 
                         72.23                          65.10 
      AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE 
                         1.185                          1.320 
[1] "0.1 - 72.2 (1.2)" "0.1 - 65.1 (1.3)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 23(13Q22.1) WILD-TYPE"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 23(13Q22.1) CNV"       "AMP PEAK 23(13Q22.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 23(13Q22.1) CNV" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 23(13Q22.1) WILD-TYPE" "AMP PEAK 23(13Q22.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "AMP PEAK 23(13Q22.1) CNV" 
[1] "hr=" "1.2"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(13Q22.1) CNV         24   53
  AMP PEAK 23(13Q22.1) WILD-TYPE   48   55
        clus
vv       AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE
  FEMALE                       24                             48
  MALE                         53                             55
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 23(13Q22.1) CNV                                           1
  AMP PEAK 23(13Q22.1) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 23(13Q22.1) CNV                                                            6
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                     10
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 23(13Q22.1) CNV                                                                       3
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                                 5
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 23(13Q22.1) CNV                                                              2
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 23(13Q22.1) CNV                                              0
  AMP PEAK 23(13Q22.1) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 23(13Q22.1) CNV                                           7
  AMP PEAK 23(13Q22.1) WILD-TYPE                                     9
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 23(13Q22.1) CNV                                                           33
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                     40
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 23(13Q22.1) CNV                                                       2
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 23(13Q22.1) CNV                                                        2
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 23(13Q22.1) CNV                                                      6
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 23(13Q22.1) CNV                                                                           14
  AMP PEAK 23(13Q22.1) WILD-TYPE                                                                     14
D23V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 23(13Q22.1) CNV        2 23 22 10
  AMP PEAK 23(13Q22.1) WILD-TYPE  4 29 34  8
D23V5, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE
  T1                        2                              4
  T2                       23                             29
  T3                       22                             34
  T4                       10                              8
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 23(13Q22.1) CNV       17 23 11  8
  AMP PEAK 23(13Q22.1) WILD-TYPE 27 26 12  7
D23V6, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE
  N0                       17                             27
  N1                       23                             26
  N2                       11                             12
  N3                        8                              7
                                vv
clus                             M0 M1 MX
  AMP PEAK 23(13Q22.1) CNV       57  6  2
  AMP PEAK 23(13Q22.1) WILD-TYPE 61 10  6
D23V7, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE
  M0                       57                             61
  M1                        6                             10
  MX                        2                              6
                                vv
clus                              I II III IV
  AMP PEAK 23(13Q22.1) CNV        7 20  13 15
  AMP PEAK 23(13Q22.1) WILD-TYPE 17 17  26 11
D23V8, multiclass
     clus
vv    AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE
  I                          7                             17
  II                        20                             17
  III                       13                             26
  IV                        15                             11
D23V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(13Q22.1) CNV          2   75
  AMP PEAK 23(13Q22.1) WILD-TYPE    3  100
     clus
vv    AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE
  NO                         2                              3
  YES                       75                            100
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 23(13Q22.1) CNV       51  4  5 12
  AMP PEAK 23(13Q22.1) WILD-TYPE 74  3  7 13
D23V10, multiclass
    clus
vv   AMP PEAK 23(13Q22.1) CNV AMP PEAK 23(13Q22.1) WILD-TYPE
  R0                       51                             74
  R1                        4                              3
  R2                        5                              7
  RX                       12                             13
D23V11, continuous

Clustering(24) Variable = Amp Peak 24(15q26.1)
D24V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 24(15Q26.1) CNV       32  5
  AMP PEAK 24(15Q26.1) WILD-TYPE 92 14
      AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE 
                            37                            106 
      AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE 
                             5                             14 
$`AMP PEAK 24(15Q26.1) CNV`
TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7959 
        1.35         1.22         1.48         1.05         0.69         1.08 
TCGA-BR-8077 TCGA-BR-A4J4 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 
        0.69         0.53         0.72         0.49         0.69         0.36 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4474 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5724 
       47.05        19.07         1.02         6.94         1.02        12.03 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6519 
       31.04         4.01        55.04         7.99         4.54        15.65 
TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6822 
        9.63         5.95         1.68         3.65         4.04         4.27 
TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7808 
        0.62        72.23         0.20         1.02         0.56         3.55 
TCGA-IP-7968 
        2.53 

$`AMP PEAK 24(15Q26.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.95         0.69         0.16         0.82         1.32 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.59         0.92         0.39         0.79         0.72         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 
        0.43         0.13         0.23         0.10         2.24         0.82 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       14.01        29.98        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        15.02        28.96 
TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6521 
       65.10        21.07         8.65         3.58         9.80         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6820 
        6.90         0.69         6.61         4.14         4.70         2.93 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        7.79         6.54         2.01         0.39         3.02         3.58 
TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7806 
       59.05         5.03        26.43         6.87 

      AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE 
                          0.20                           0.07 
      AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE 
                         72.23                          70.06 
      AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE 
                          1.68                           1.15 
[1] "0.2 - 72.2 (1.7)" "0.1 - 70.1 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 24(15Q26.1) CNV"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 24(15Q26.1) WILD-TYPE" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 24(15Q26.1) CNV" "AMP PEAK 24(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 24(15Q26.1) WILD-TYPE"       "AMP PEAK 24(15Q26.1) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 24(15Q26.1) CNV" 
[1] "hr=" "1.4"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(15Q26.1) CNV         14   32
  AMP PEAK 24(15Q26.1) WILD-TYPE   58   76
        clus
vv       AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE
  FEMALE                       14                             58
  MALE                         32                             76
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 24(15Q26.1) CNV                                           0
  AMP PEAK 24(15Q26.1) WILD-TYPE                                    10
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 24(15Q26.1) CNV                                                            4
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                     12
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 24(15Q26.1) CNV                                                                       2
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 24(15Q26.1) CNV                                                              1
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 24(15Q26.1) CNV                                              0
  AMP PEAK 24(15Q26.1) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 24(15Q26.1) CNV                                           7
  AMP PEAK 24(15Q26.1) WILD-TYPE                                     9
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 24(15Q26.1) CNV                                                           15
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                     58
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 24(15Q26.1) CNV                                                       4
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                 3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 24(15Q26.1) CNV                                                        1
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 24(15Q26.1) CNV                                                      4
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 24(15Q26.1) CNV                                                                            6
  AMP PEAK 24(15Q26.1) WILD-TYPE                                                                     22
D24V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 24(15Q26.1) CNV        0 16 16  5
  AMP PEAK 24(15Q26.1) WILD-TYPE  6 36 40 13
D24V5, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE
  T1                        0                              6
  T2                       16                             36
  T3                       16                             40
  T4                        5                             13
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 24(15Q26.1) CNV       10 12  8  7
  AMP PEAK 24(15Q26.1) WILD-TYPE 34 37 15  8
D24V6, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE
  N0                       10                             34
  N1                       12                             37
  N2                        8                             15
  N3                        7                              8
                                vv
clus                             M0 M1 MX
  AMP PEAK 24(15Q26.1) CNV       31  6  2
  AMP PEAK 24(15Q26.1) WILD-TYPE 87 10  6
D24V7, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE
  M0                       31                             87
  M1                        6                             10
  MX                        2                              6
                                vv
clus                              I II III IV
  AMP PEAK 24(15Q26.1) CNV        4 11  12  9
  AMP PEAK 24(15Q26.1) WILD-TYPE 20 26  27 17
D24V8, multiclass
     clus
vv    AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE
  I                          4                             20
  II                        11                             26
  III                       12                             27
  IV                         9                             17
D24V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(15Q26.1) CNV          2   44
  AMP PEAK 24(15Q26.1) WILD-TYPE    3  131
     clus
vv    AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE
  NO                         2                              3
  YES                       44                            131
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 24(15Q26.1) CNV       30  3  4  5
  AMP PEAK 24(15Q26.1) WILD-TYPE 95  4  8 20
D24V10, multiclass
    clus
vv   AMP PEAK 24(15Q26.1) CNV AMP PEAK 24(15Q26.1) WILD-TYPE
  R0                       30                             95
  R1                        3                              4
  R2                        4                              8
  RX                        5                             20
D24V11, continuous

Clustering(25) Variable = Amp Peak 25(17q12)
D25V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 25(17Q12) CNV       42  7
  AMP PEAK 25(17Q12) WILD-TYPE 82 12
      AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE 
                          49                           94 
      AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE 
                           7                           12 
$`AMP PEAK 25(17Q12) CNV`
TCGA-B7-5818 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7959 
        0.10         0.62         1.48         1.05         0.69         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8296 
        0.82         1.32         0.69         0.43         0.26         1.48 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 
        0.39         0.72         0.53         0.49         0.69         0.36 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 
       20.02         3.02        52.96         4.01        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5716 TCGA-CG-5719 TCGA-CG-5722 
       12.03        21.99        18.94         1.02         1.02         0.95 
TCGA-CG-5724 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 
       12.03         4.01        55.04         8.19         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        4.14         3.65         4.70         2.93         4.27         0.62 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-8631 TCGA-HJ-7597 
        7.79        72.23         0.39         3.02         0.56        26.43 
TCGA-IP-7968 
        2.53 

$`AMP PEAK 25(17Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8078 TCGA-BR-8080 
        0.99         0.95         0.69         0.16         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8297 
        0.46         0.72         0.26         1.18         1.55         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 
        0.20         0.59         0.92         0.79         0.79         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5798 
        0.13         0.23         0.10         0.72         2.24         0.82 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.49         0.30         0.07        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4462 TCGA-CG-4465 
        8.05        54.05        14.01        29.98         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       65.10        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 
        9.80        15.65         9.63         6.90         0.69         1.68 
TCGA-D7-6818 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8099 
        4.04         6.54         2.01         0.20         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 TCGA-IN-7808 
       59.05         5.03         6.87         3.55 

      AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE 
                        0.10                         0.07 
      AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE 
                       72.23                        70.06 
      AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE 
                        2.53                         1.15 
[1] "0.1 - 72.2 (2.5)" "0.1 - 70.1 (1.1)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6817                   TCGA-D7-6818 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IP-7968 
      "AMP PEAK 25(17Q12) CNV" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6817                   TCGA-D7-6818 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IP-7968 
      "AMP PEAK 25(17Q12) CNV" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-D7-6817                   TCGA-D7-6818 
      "AMP PEAK 25(17Q12) CNV" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 25(17Q12) WILD-TYPE"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 25(17Q12) CNV"       "AMP PEAK 25(17Q12) CNV" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 25(17Q12) WILD-TYPE" "AMP PEAK 25(17Q12) WILD-TYPE" 
                  TCGA-IP-7968 
      "AMP PEAK 25(17Q12) CNV" 
[1] "hr=" "1.2"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 25(17Q12) CNV         19   37
  AMP PEAK 25(17Q12) WILD-TYPE   53   71
        clus
vv       AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE
  FEMALE                     19                           53
  MALE                       37                           71
                              vv
clus                           STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 25(17Q12) CNV                                           1
  AMP PEAK 25(17Q12) WILD-TYPE                                     9
                              vv
clus                           STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 25(17Q12) CNV                                                            6
  AMP PEAK 25(17Q12) WILD-TYPE                                                     10
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 25(17Q12) CNV                                                                       6
  AMP PEAK 25(17Q12) WILD-TYPE                                                                 2
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 25(17Q12) CNV                                                              1
  AMP PEAK 25(17Q12) WILD-TYPE                                                        2
                              vv
clus                           STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 25(17Q12) CNV                                              1
  AMP PEAK 25(17Q12) WILD-TYPE                                        0
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 25(17Q12) CNV                                           4
  AMP PEAK 25(17Q12) WILD-TYPE                                    12
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 25(17Q12) CNV                                                           17
  AMP PEAK 25(17Q12) WILD-TYPE                                                     56
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 25(17Q12) CNV                                                       2
  AMP PEAK 25(17Q12) WILD-TYPE                                                 5
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 25(17Q12) CNV                                                        2
  AMP PEAK 25(17Q12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 25(17Q12) CNV                                                      5
  AMP PEAK 25(17Q12) WILD-TYPE                                                5
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 25(17Q12) CNV                                                                            9
  AMP PEAK 25(17Q12) WILD-TYPE                                                                     19
D25V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 25(17Q12) CNV        0 19 14  6
  AMP PEAK 25(17Q12) WILD-TYPE  6 33 42 12
D25V5, multiclass
    clus
vv   AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE
  T1                      0                            6
  T2                     19                           33
  T3                     14                           42
  T4                      6                           12
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 25(17Q12) CNV       13 11  9  5
  AMP PEAK 25(17Q12) WILD-TYPE 31 38 14 10
D25V6, multiclass
    clus
vv   AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE
  N0                     13                           31
  N1                     11                           38
  N2                      9                           14
  N3                      5                           10
                              vv
clus                           M0 M1 MX
  AMP PEAK 25(17Q12) CNV       28  9  4
  AMP PEAK 25(17Q12) WILD-TYPE 90  7  4
D25V7, multiclass
    clus
vv   AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE
  M0                     28                           90
  M1                      9                            7
  MX                      4                            4
                              vv
clus                            I II III IV
  AMP PEAK 25(17Q12) CNV        7 11   9 11
  AMP PEAK 25(17Q12) WILD-TYPE 17 26  30 15
D25V8, multiclass
     clus
vv    AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE
  I                        7                           17
  II                      11                           26
  III                      9                           30
  IV                      11                           15
D25V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 25(17Q12) CNV          2   54
  AMP PEAK 25(17Q12) WILD-TYPE    3  121
     clus
vv    AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE
  NO                       2                            3
  YES                     54                          121
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 25(17Q12) CNV       40  0  8  3
  AMP PEAK 25(17Q12) WILD-TYPE 85  7  4 22
D25V10, multiclass
    clus
vv   AMP PEAK 25(17Q12) CNV AMP PEAK 25(17Q12) WILD-TYPE
  R0                     40                           85
  R1                      0                            7
  R2                      8                            4
  RX                      3                           22
D25V11, continuous

Clustering(26) Variable = Amp Peak 26(18q11.2)
D26V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 26(18Q11.2) CNV       34  9
  AMP PEAK 26(18Q11.2) WILD-TYPE 90 10
      AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE 
                            43                            100 
      AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE 
                             9                             10 
$`AMP PEAK 26(18Q11.2) CNV`
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-7715 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 
        0.82         0.62         1.05         0.16         4.54         0.95 
TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8284 TCGA-BR-8286 TCGA-BR-8295 TCGA-BR-8296 
        0.69         0.49         0.72         0.43         1.55         1.48 
TCGA-BR-8297 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.76         0.39         0.72         0.13         0.23         0.72 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4440 
        0.82         0.69         0.36        20.02         3.02         4.01 
TCGA-CG-4441 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       14.01        19.07        21.99         7.07        12.00         1.02 
TCGA-CG-5724 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 
       12.03         4.54         9.80         8.19         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-8631 
        4.14         1.68         4.70         0.62        72.23         0.56 
TCGA-HJ-7597 
       26.43 

$`AMP PEAK 26(18Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.85         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8285 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8592 
        0.95         0.46         0.26         0.26         1.18         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.59         0.92         0.79         0.79         0.53         0.43 
TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.10         0.49         2.24         0.49         0.30         0.07 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       29.98        47.05        12.03         1.02         8.98        18.94 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 
        3.58        15.65         9.63         6.90         0.69         3.65 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         7.79         6.54         2.01 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        0.39         0.20         3.02         3.58         1.02        59.05 
TCGA-FP-8210 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        5.03         6.87         3.55         2.53 

      AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE 
                          0.13                           0.07 
      AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE 
                         72.23                          70.06 
      AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE 
                         1.480                          1.235 
[1] "0.1 - 72.2 (1.5)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 26(18Q11.2) WILD-TYPE"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 26(18Q11.2) CNV" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 26(18Q11.2) CNV"       "AMP PEAK 26(18Q11.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"AMP PEAK 26(18Q11.2) WILD-TYPE" "AMP PEAK 26(18Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
"AMP PEAK 26(18Q11.2) WILD-TYPE" 
[1] "hr=" "2.3"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(18Q11.2) CNV         21   36
  AMP PEAK 26(18Q11.2) WILD-TYPE   51   72
        clus
vv       AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE
  FEMALE                       21                             51
  MALE                         36                             72
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 26(18Q11.2) CNV                                           1
  AMP PEAK 26(18Q11.2) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 26(18Q11.2) CNV                                                            7
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                      9
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 26(18Q11.2) CNV                                                                       4
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                                 4
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 26(18Q11.2) CNV                                                              1
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 26(18Q11.2) CNV                                              1
  AMP PEAK 26(18Q11.2) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 26(18Q11.2) CNV                                           6
  AMP PEAK 26(18Q11.2) WILD-TYPE                                    10
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 26(18Q11.2) CNV                                                           22
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                     51
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 26(18Q11.2) CNV                                                       4
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                 3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 26(18Q11.2) CNV                                                        2
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 26(18Q11.2) CNV                                                      3
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 26(18Q11.2) CNV                                                                            5
  AMP PEAK 26(18Q11.2) WILD-TYPE                                                                     23
D26V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 26(18Q11.2) CNV        0 12 19  6
  AMP PEAK 26(18Q11.2) WILD-TYPE  6 40 37 12
D26V5, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE
  T1                        0                              6
  T2                       12                             40
  T3                       19                             37
  T4                        6                             12
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 26(18Q11.2) CNV        8 15  8  8
  AMP PEAK 26(18Q11.2) WILD-TYPE 36 34 15  7
D26V6, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE
  N0                        8                             36
  N1                       15                             34
  N2                        8                             15
  N3                        8                              7
                                vv
clus                             M0 M1 MX
  AMP PEAK 26(18Q11.2) CNV       34  6  3
  AMP PEAK 26(18Q11.2) WILD-TYPE 84 10  5
D26V7, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE
  M0                       34                             84
  M1                        6                             10
  MX                        3                              5
                                vv
clus                              I II III IV
  AMP PEAK 26(18Q11.2) CNV        3 10  13 10
  AMP PEAK 26(18Q11.2) WILD-TYPE 21 27  26 16
D26V8, multiclass
     clus
vv    AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE
  I                          3                             21
  II                        10                             27
  III                       13                             26
  IV                        10                             16
D26V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 26(18Q11.2) CNV          3   54
  AMP PEAK 26(18Q11.2) WILD-TYPE    2  121
     clus
vv    AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE
  NO                         3                              2
  YES                       54                            121
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 26(18Q11.2) CNV       35  5  6  8
  AMP PEAK 26(18Q11.2) WILD-TYPE 90  2  6 17
D26V10, multiclass
    clus
vv   AMP PEAK 26(18Q11.2) CNV AMP PEAK 26(18Q11.2) WILD-TYPE
  R0                       35                             90
  R1                        5                              2
  R2                        6                              6
  RX                        8                             17
D26V11, continuous

Clustering(27) Variable = Amp Peak 27(19q12)
D27V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 27(19Q12) CNV       39  3
  AMP PEAK 27(19Q12) WILD-TYPE 85 16
      AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE 
                          42                          101 
      AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE 
                           3                           16 
$`AMP PEAK 27(19Q12) CNV`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        1.35         1.48         1.05         0.82         4.54         0.95 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        1.32         0.69         0.43         0.26         1.18         1.55 
TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4438 
        0.23         0.49         0.36         0.49         0.30        54.05 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4474 TCGA-CG-5722 TCGA-CG-5730 
       47.05        19.07        21.99         1.02         0.95         4.01 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 
        8.65         3.58         4.54         9.80         9.63         8.19 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 
        6.61         4.14         1.68         4.04         4.27         0.62 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-8631 TCGA-IN-7808 
        7.79        72.23         0.39         3.02         0.56         3.55 

$`AMP PEAK 27(19Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 
        1.22         0.46         1.25         0.13         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8078 
        0.99         0.69         0.16         1.08         0.82         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8296 TCGA-BR-8297 
        0.49         0.46         0.72         0.26         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.79         0.53         0.43         0.13         0.10         0.72 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        2.24         0.82         0.69         0.07        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
       27.02        15.95         1.02        52.96         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       14.01        29.98        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         5.98        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10        55.04        21.07         7.99 
TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6817 
       15.65         6.90         0.69         5.95         3.65         4.70 
TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8099 
        2.93         6.54         2.01         0.20         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
       59.05         5.03        26.43         6.87         2.53 

      AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE 
                        0.23                         0.07 
      AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE 
                       72.23                        70.06 
      AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE 
                       1.615                        1.080 
[1] "0.2 - 72.2 (1.6)" "0.1 - 70.1 (1.1)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-5579                   TCGA-D7-6518 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-5579                   TCGA-D7-6518 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4301                   TCGA-CG-4304 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-4477                   TCGA-CG-5716 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5719                   TCGA-CG-5720 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-5579                   TCGA-D7-6518 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6519                   TCGA-D7-6520 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-D7-6820                   TCGA-D7-6822 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "AMP PEAK 27(19Q12) CNV"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"AMP PEAK 27(19Q12) WILD-TYPE" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "AMP PEAK 27(19Q12) CNV" "AMP PEAK 27(19Q12) WILD-TYPE" 
                  TCGA-IN-7806                   TCGA-IN-7808 
"AMP PEAK 27(19Q12) WILD-TYPE"       "AMP PEAK 27(19Q12) CNV" 
                  TCGA-IP-7968 
"AMP PEAK 27(19Q12) WILD-TYPE" 
[1] "hr=" "3"  
D27V2, continuous
D27V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) CNV         22   32
  AMP PEAK 27(19Q12) WILD-TYPE   50   76
        clus
vv       AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE
  FEMALE                     22                           50
  MALE                       32                           76
                              vv
clus                           STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 27(19Q12) CNV                                           2
  AMP PEAK 27(19Q12) WILD-TYPE                                     8
                              vv
clus                           STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 27(19Q12) CNV                                                            5
  AMP PEAK 27(19Q12) WILD-TYPE                                                     11
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 27(19Q12) CNV                                                                       4
  AMP PEAK 27(19Q12) WILD-TYPE                                                                 4
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 27(19Q12) CNV                                                              0
  AMP PEAK 27(19Q12) WILD-TYPE                                                        3
                              vv
clus                           STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 27(19Q12) CNV                                              0
  AMP PEAK 27(19Q12) WILD-TYPE                                        1
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 27(19Q12) CNV                                           5
  AMP PEAK 27(19Q12) WILD-TYPE                                    11
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 27(19Q12) CNV                                                           21
  AMP PEAK 27(19Q12) WILD-TYPE                                                     52
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 27(19Q12) CNV                                                       3
  AMP PEAK 27(19Q12) WILD-TYPE                                                 4
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 27(19Q12) CNV                                                        2
  AMP PEAK 27(19Q12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 27(19Q12) CNV                                                      6
  AMP PEAK 27(19Q12) WILD-TYPE                                                4
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 27(19Q12) CNV                                                                            4
  AMP PEAK 27(19Q12) WILD-TYPE                                                                     24
D27V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 27(19Q12) CNV        0 16 19  5
  AMP PEAK 27(19Q12) WILD-TYPE  6 36 37 13
D27V5, multiclass
    clus
vv   AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE
  T1                      0                            6
  T2                     16                           36
  T3                     19                           37
  T4                      5                           13
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 27(19Q12) CNV       10 13 10  6
  AMP PEAK 27(19Q12) WILD-TYPE 34 36 13  9
D27V6, multiclass
    clus
vv   AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE
  N0                     10                           34
  N1                     13                           36
  N2                     10                           13
  N3                      6                            9
                              vv
clus                           M0 M1 MX
  AMP PEAK 27(19Q12) CNV       34  6  3
  AMP PEAK 27(19Q12) WILD-TYPE 84 10  5
D27V7, multiclass
    clus
vv   AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE
  M0                     34                           84
  M1                      6                           10
  MX                      3                            5
                              vv
clus                            I II III IV
  AMP PEAK 27(19Q12) CNV        5 13  10 10
  AMP PEAK 27(19Q12) WILD-TYPE 19 24  29 16
D27V8, multiclass
     clus
vv    AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE
  I                        5                           19
  II                      13                           24
  III                     10                           29
  IV                      10                           16
D27V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 27(19Q12) CNV          4   50
  AMP PEAK 27(19Q12) WILD-TYPE    1  125
     clus
vv    AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE
  NO                       4                            1
  YES                     50                          125
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 27(19Q12) CNV       33  4  5  6
  AMP PEAK 27(19Q12) WILD-TYPE 92  3  7 19
D27V10, multiclass
    clus
vv   AMP PEAK 27(19Q12) CNV AMP PEAK 27(19Q12) WILD-TYPE
  R0                     33                           92
  R1                      4                            3
  R2                      5                            7
  RX                      6                           19
D27V11, continuous

Clustering(28) Variable = Amp Peak 28(20q13.2)
D28V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 28(20Q13.2) CNV       85 12
  AMP PEAK 28(20Q13.2) WILD-TYPE 39  7
      AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE 
                            97                             46 
      AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE 
                            12                              7 
$`AMP PEAK 28(20Q13.2) CNV`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
        1.41         1.35         1.35         0.85         0.82         0.62 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        2.17         0.99         1.12         0.26         1.22         1.48 
TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.25         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.95         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8080 TCGA-BR-8285 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.49         0.26         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.76         0.39         0.72         0.53         0.23         0.10 
TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4300 
        0.72         0.49         0.69         0.36         0.49        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5719 
       21.99        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 
        0.95        12.03        15.02        28.96        31.04         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       15.65         9.63         8.19         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        1.68         3.65         4.70         2.93         4.27         0.62 
TCGA-EQ-8122 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        7.79         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        3.58         1.02         0.56        26.43         6.87         3.55 
TCGA-IP-7968 
        2.53 

$`AMP PEAK 28(20Q13.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6709 
        5.62         0.10         0.95         0.62         1.71         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7851 
        0.66         0.76         0.66         0.46         0.13         0.99 
TCGA-BR-7957 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8286 TCGA-BR-8592 
        0.69         0.95         0.46         0.72         0.43         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.59         0.92         0.79         0.79         0.43         0.13 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4306 TCGA-CG-4462 
        2.24         0.82         0.30         0.07         1.02         1.02 
TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 
        8.98         1.02         1.02         1.02         6.94         0.99 
TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-6522 TCGA-D7-6524 
        5.98        70.06        65.10        21.07         6.90         0.69 
TCGA-D7-6818 TCGA-F1-6177 TCGA-FP-8209 TCGA-FP-8210 
        4.04         6.54        59.05         5.03 

      AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE 
                          0.10                           0.07 
      AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE 
                         72.23                          70.06 
      AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE 
                          2.01                           0.95 
[1] "0.1 - 72.2 (2.0)" "0.1 - 70.1 (0.9)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6707                     TCGA-BR-6709 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "AMP PEAK 28(20Q13.2) CNV" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"AMP PEAK 28(20Q13.2) WILD-TYPE"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"AMP PEAK 28(20Q13.2) WILD-TYPE" "AMP PEAK 28(20Q13.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "AMP PEAK 28(20Q13.2) CNV"       "AMP PEAK 28(20Q13.2) CNV" 
                    TCGA-IP-7968 
      "AMP PEAK 28(20Q13.2) CNV" 
[1] "hr=" "2"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(20Q13.2) CNV         41   80
  AMP PEAK 28(20Q13.2) WILD-TYPE   31   28
        clus
vv       AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE
  FEMALE                       41                             31
  MALE                         80                             28
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 28(20Q13.2) CNV                                           3
  AMP PEAK 28(20Q13.2) WILD-TYPE                                     7
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 28(20Q13.2) CNV                                                           11
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                      5
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 28(20Q13.2) CNV                                                                       7
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                                 1
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 28(20Q13.2) CNV                                                              2
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 28(20Q13.2) CNV                                              1
  AMP PEAK 28(20Q13.2) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 28(20Q13.2) CNV                                           9
  AMP PEAK 28(20Q13.2) WILD-TYPE                                     7
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 28(20Q13.2) CNV                                                           47
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                     26
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 28(20Q13.2) CNV                                                       5
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                 2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 28(20Q13.2) CNV                                                        2
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 28(20Q13.2) CNV                                                     10
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 28(20Q13.2) CNV                                                                           21
  AMP PEAK 28(20Q13.2) WILD-TYPE                                                                      7
D28V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 28(20Q13.2) CNV        3 36 41 11
  AMP PEAK 28(20Q13.2) WILD-TYPE  3 16 15  7
D28V5, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE
  T1                        3                              3
  T2                       36                             16
  T3                       41                             15
  T4                       11                              7
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 28(20Q13.2) CNV       25 37 15 12
  AMP PEAK 28(20Q13.2) WILD-TYPE 19 12  8  3
D28V6, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE
  N0                       25                             19
  N1                       37                             12
  N2                       15                              8
  N3                       12                              3
                                vv
clus                             M0 M1 MX
  AMP PEAK 28(20Q13.2) CNV       81 10  6
  AMP PEAK 28(20Q13.2) WILD-TYPE 37  6  2
D28V7, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE
  M0                       81                             37
  M1                       10                              6
  MX                        6                              2
                                vv
clus                              I II III IV
  AMP PEAK 28(20Q13.2) CNV       13 25  32 17
  AMP PEAK 28(20Q13.2) WILD-TYPE 11 12   7  9
D28V8, multiclass
     clus
vv    AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE
  I                         13                             11
  II                        25                             12
  III                       32                              7
  IV                        17                              9
D28V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 28(20Q13.2) CNV          3  118
  AMP PEAK 28(20Q13.2) WILD-TYPE    2   57
     clus
vv    AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE
  NO                         3                              2
  YES                      118                             57
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 28(20Q13.2) CNV       88  5  7 14
  AMP PEAK 28(20Q13.2) WILD-TYPE 37  2  5 11
D28V10, multiclass
    clus
vv   AMP PEAK 28(20Q13.2) CNV AMP PEAK 28(20Q13.2) WILD-TYPE
  R0                       88                             37
  R1                        5                              2
  R2                        7                              5
  RX                       14                             11
D28V11, continuous

Clustering(29) Variable = Amp Peak 29(Xq27.3)
D29V1, survival
                               sevent
clus2                             0   1
  AMP PEAK 29(XQ27.3) CNV        23   6
  AMP PEAK 29(XQ27.3) WILD-TYPE 101  13
      AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE 
                           29                           114 
      AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE 
                            6                            13 
$`AMP PEAK 29(XQ27.3) CNV`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6801 TCGA-BR-7704 TCGA-BR-7717 TCGA-BR-8059 
        0.10         1.35         1.12         1.25         0.69         0.82 
TCGA-BR-A4IY TCGA-BR-A4J2 TCGA-BR-A4QI TCGA-CG-4300 TCGA-CG-4437 TCGA-CG-4438 
        0.39         0.79         0.49        20.02         8.05        54.05 
TCGA-CG-4460 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5720 TCGA-CG-5727 TCGA-CG-5734 
       21.99         7.07        12.00         0.99        31.04         7.99 
TCGA-D7-5579 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6822 
        4.54         8.19         6.61         1.68         3.65         4.27 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 TCGA-IN-7808 
        0.62         7.79        72.23         0.39         3.55 

$`AMP PEAK 29(XQ27.3) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        0.66         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         0.13         1.05         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8060 
        0.99         0.95         0.69         0.16         1.08         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.72         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL 
        0.43         0.13         0.23         0.10         0.72         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 
        3.02        27.02        15.95         1.02        52.96         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 
       14.01        29.98        47.05        19.07        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        8.98        18.94         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       15.02        28.96        65.10         4.01        55.04        21.07 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 
        8.65         3.58         9.80        15.65         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        0.69         5.95         4.14         4.70         4.04         2.93 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
        6.54         2.01         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
       59.05         5.03         0.56        26.43         6.87         2.53 

      AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE 
                         0.10                          0.07 
      AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE 
                        72.23                         70.06 
      AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE 
                        3.650                         1.065 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "AMP PEAK 29(XQ27.3) CNV" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "AMP PEAK 29(XQ27.3) CNV"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"AMP PEAK 29(XQ27.3) WILD-TYPE" "AMP PEAK 29(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"AMP PEAK 29(XQ27.3) WILD-TYPE"       "AMP PEAK 29(XQ27.3) CNV" 
                   TCGA-IP-7968 
"AMP PEAK 29(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ27.3) CNV         15   22
  AMP PEAK 29(XQ27.3) WILD-TYPE   57   86
        clus
vv       AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE
  FEMALE                      15                            57
  MALE                        22                            86
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  AMP PEAK 29(XQ27.3) CNV                                           1
  AMP PEAK 29(XQ27.3) WILD-TYPE                                     9
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 29(XQ27.3) CNV                                                            2
  AMP PEAK 29(XQ27.3) WILD-TYPE                                                     14
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 29(XQ27.3) CNV                                                                       2
  AMP PEAK 29(XQ27.3) WILD-TYPE                                                                 6
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  AMP PEAK 29(XQ27.3) CNV                                                              0
  AMP PEAK 29(XQ27.3) WILD-TYPE                                                        3
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  AMP PEAK 29(XQ27.3) CNV                                              0
  AMP PEAK 29(XQ27.3) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 29(XQ27.3) CNV                                           3
  AMP PEAK 29(XQ27.3) WILD-TYPE                                    13
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 29(XQ27.3) CNV                                                           14
  AMP PEAK 29(XQ27.3) WILD-TYPE                                                     59
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 29(XQ27.3) CNV                                                       2
  AMP PEAK 29(XQ27.3) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 29(XQ27.3) CNV                                                        0
  AMP PEAK 29(XQ27.3) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 29(XQ27.3) CNV                                                      4
  AMP PEAK 29(XQ27.3) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 29(XQ27.3) CNV                                                                            8
  AMP PEAK 29(XQ27.3) WILD-TYPE                                                                     20
D29V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 29(XQ27.3) CNV        1 11 11  7
  AMP PEAK 29(XQ27.3) WILD-TYPE  5 41 45 11
D29V5, multiclass
    clus
vv   AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE
  T1                       1                             5
  T2                      11                            41
  T3                      11                            45
  T4                       7                            11
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 29(XQ27.3) CNV       10 10  7  4
  AMP PEAK 29(XQ27.3) WILD-TYPE 34 39 16 11
D29V6, multiclass
    clus
vv   AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE
  N0                      10                            34
  N1                      10                            39
  N2                       7                            16
  N3                       4                            11
                               vv
clus                            M0 M1 MX
  AMP PEAK 29(XQ27.3) CNV       28  3  1
  AMP PEAK 29(XQ27.3) WILD-TYPE 90 13  7
D29V7, multiclass
    clus
vv   AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE
  M0                      28                            90
  M1                       3                            13
  MX                       1                             7
                               vv
clus                             I II III IV
  AMP PEAK 29(XQ27.3) CNV        7  5   9  8
  AMP PEAK 29(XQ27.3) WILD-TYPE 17 32  30 18
D29V8, multiclass
     clus
vv    AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE
  I                         7                            17
  II                        5                            32
  III                       9                            30
  IV                        8                            18
D29V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 29(XQ27.3) CNV          1   36
  AMP PEAK 29(XQ27.3) WILD-TYPE    4  139
     clus
vv    AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE
  NO                        1                             4
  YES                      36                           139
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK 29(XQ27.3) CNV        25   3   2   5
  AMP PEAK 29(XQ27.3) WILD-TYPE 100   4  10  20
D29V10, multiclass
    clus
vv   AMP PEAK 29(XQ27.3) CNV AMP PEAK 29(XQ27.3) WILD-TYPE
  R0                      25                           100
  R1                       3                             4
  R2                       2                            10
  RX                       5                            20
D29V11, continuous

Clustering(30) Variable = Del Peak  1(1p36.11)
D30V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.11) CNV       29  5
  DEL PEAK  1(1P36.11) WILD-TYPE 95 14
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            34                            109 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                             5                             14 
$`DEL PEAK  1(1P36.11) CNV`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8289 
        5.62         1.35         0.62         1.08         1.32         0.26 
TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 
        0.72         0.49         0.69        20.02         3.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
        8.05        54.05        14.01        29.98        47.05        19.07 
TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 
        7.07         1.02         1.02        12.03        15.02         4.01 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 
        4.54        15.65         6.61         4.14         1.68         4.70 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-8099 
        4.27         0.62         7.79         1.02 

$`DEL PEAK  1(1P36.11) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        0.82         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.26         0.43         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.24         0.82         0.36         0.49         0.30         0.07 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-4455 TCGA-CG-4460 
       27.02        15.95         1.02         4.01        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
        1.02         8.98        18.94        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        8.65         3.58         9.80         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6177 
        0.69         5.95         3.65         4.04         2.93         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       59.05         5.03         0.56        26.43         6.87         3.55 
TCGA-IP-7968 
        2.53 

      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                         54.05                          72.23 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                         4.405                          1.020 
[1] "0.3 - 54.0 (4.4)" "0.1 - 72.2 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" 
[1] "hr=" "1.3"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV         16   30
  DEL PEAK  1(1P36.11) WILD-TYPE   56   78
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                       16                             56
  MALE                         30                             78
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  1(1P36.11) CNV                                           0
  DEL PEAK  1(1P36.11) WILD-TYPE                                    10
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  1(1P36.11) CNV                                                            4
  DEL PEAK  1(1P36.11) WILD-TYPE                                                     12
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  1(1P36.11) CNV                                                                       2
  DEL PEAK  1(1P36.11) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  1(1P36.11) CNV                                                              1
  DEL PEAK  1(1P36.11) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  1(1P36.11) CNV                                              0
  DEL PEAK  1(1P36.11) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  1(1P36.11) CNV                                           3
  DEL PEAK  1(1P36.11) WILD-TYPE                                    13
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  1(1P36.11) CNV                                                           16
  DEL PEAK  1(1P36.11) WILD-TYPE                                                     57
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  1(1P36.11) CNV                                                       3
  DEL PEAK  1(1P36.11) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  1(1P36.11) CNV                                                        1
  DEL PEAK  1(1P36.11) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  1(1P36.11) CNV                                                      5
  DEL PEAK  1(1P36.11) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  1(1P36.11) CNV                                                                           10
  DEL PEAK  1(1P36.11) WILD-TYPE                                                                     18
D30V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  1(1P36.11) CNV        1 18 11  5
  DEL PEAK  1(1P36.11) WILD-TYPE  5 34 45 13
D30V5, multiclass
    clus
vv   DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  T1                        1                              5
  T2                       18                             34
  T3                       11                             45
  T4                        5                             13
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK  1(1P36.11) CNV       11 12  6  5
  DEL PEAK  1(1P36.11) WILD-TYPE 33 37 17 10
D30V6, multiclass
    clus
vv   DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  N0                       11                             33
  N1                       12                             37
  N2                        6                             17
  N3                        5                             10
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.11) CNV       33  5  1
  DEL PEAK  1(1P36.11) WILD-TYPE 85 11  7
D30V7, multiclass
    clus
vv   DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  M0                       33                             85
  M1                        5                             11
  MX                        1                              7
                                vv
clus                              I II III IV
  DEL PEAK  1(1P36.11) CNV        7  9   9  8
  DEL PEAK  1(1P36.11) WILD-TYPE 17 28  30 18
D30V8, multiclass
     clus
vv    DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  I                          7                             17
  II                         9                             28
  III                        9                             30
  IV                         8                             18
D30V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV          2   44
  DEL PEAK  1(1P36.11) WILD-TYPE    3  131
     clus
vv    DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  NO                         2                              3
  YES                       44                            131
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK  1(1P36.11) CNV       27  4  4  9
  DEL PEAK  1(1P36.11) WILD-TYPE 98  3  8 16
D30V10, multiclass
    clus
vv   DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  R0                       27                             98
  R1                        4                              3
  R2                        4                              8
  RX                        9                             16
D30V11, continuous

Clustering(31) Variable = Del Peak  2(1p13.2)
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P13.2) CNV       27  2
  DEL PEAK  2(1P13.2) WILD-TYPE 97 17
      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                           29                           114 
      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                            2                            17 
$`DEL PEAK  2(1P13.2) CNV`
TCGA-BR-7901 TCGA-BR-7959 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-A4IY TCGA-BR-A4J6 
        0.95         1.08         0.26         1.55         0.39         0.13 
TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4436 
        0.72         0.49         0.69         0.30         3.02        52.96 
TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5724 TCGA-CG-5730 
       54.05        29.98        18.94         1.02        12.03         4.01 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        4.54        15.65         8.19         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 TCGA-IP-7968 
        4.70         0.62         7.79         0.20         2.53 

$`DEL PEAK  2(1P13.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.05         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.69         0.16         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 
        0.49         0.46         0.72         0.26         0.43         1.18 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ 
        1.48         0.76         0.20         0.59         0.92         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.72         0.79         0.53         0.43         0.23         0.10 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 
        2.24         0.82         0.36         0.49         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 
       27.02        15.95         1.02         8.05         4.01        14.01 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        70.06        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 
        8.65         3.58         9.80         9.63         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6177 
        5.95         3.65         4.04         2.93         4.27         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
        2.01        72.23         0.39         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       59.05         5.03         0.56        26.43         6.87         3.55 

      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                         0.13                          0.07 
      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                        54.05                         72.23 
      DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE 
                         2.53                          1.20 
[1] "0.1 - 54.0 (2.5)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  2(1P13.2) WILD-TYPE"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  2(1P13.2) CNV"       "DEL PEAK  2(1P13.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  2(1P13.2) CNV" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  2(1P13.2) WILD-TYPE" "DEL PEAK  2(1P13.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK  2(1P13.2) CNV" 
[1] "hr=" "2.2"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.2) CNV         13   21
  DEL PEAK  2(1P13.2) WILD-TYPE   59   87
        clus
vv       DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  FEMALE                      13                            59
  MALE                        21                            87
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  2(1P13.2) CNV                                           0
  DEL PEAK  2(1P13.2) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  2(1P13.2) CNV                                                            5
  DEL PEAK  2(1P13.2) WILD-TYPE                                                     11
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  2(1P13.2) CNV                                                                       2
  DEL PEAK  2(1P13.2) WILD-TYPE                                                                 6
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  2(1P13.2) CNV                                                              1
  DEL PEAK  2(1P13.2) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  2(1P13.2) CNV                                              0
  DEL PEAK  2(1P13.2) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  2(1P13.2) CNV                                           3
  DEL PEAK  2(1P13.2) WILD-TYPE                                    13
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  2(1P13.2) CNV                                                            8
  DEL PEAK  2(1P13.2) WILD-TYPE                                                     65
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  2(1P13.2) CNV                                                       2
  DEL PEAK  2(1P13.2) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  2(1P13.2) CNV                                                        1
  DEL PEAK  2(1P13.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  2(1P13.2) CNV                                                      4
  DEL PEAK  2(1P13.2) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  2(1P13.2) CNV                                                                            7
  DEL PEAK  2(1P13.2) WILD-TYPE                                                                     21
D31V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  2(1P13.2) CNV        1 11  9  3
  DEL PEAK  2(1P13.2) WILD-TYPE  5 41 47 15
D31V5, multiclass
    clus
vv   DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  T1                       1                             5
  T2                      11                            41
  T3                       9                            47
  T4                       3                            15
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  2(1P13.2) CNV        7  8  5  3
  DEL PEAK  2(1P13.2) WILD-TYPE 37 41 18 12
D31V6, multiclass
    clus
vv   DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  N0                       7                            37
  N1                       8                            41
  N2                       5                            18
  N3                       3                            12
                               vv
clus                            M0 M1 MX
  DEL PEAK  2(1P13.2) CNV       21  4  1
  DEL PEAK  2(1P13.2) WILD-TYPE 97 12  7
D31V7, multiclass
    clus
vv   DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  M0                      21                            97
  M1                       4                            12
  MX                       1                             7
                               vv
clus                             I II III IV
  DEL PEAK  2(1P13.2) CNV        5  6   7  5
  DEL PEAK  2(1P13.2) WILD-TYPE 19 31  32 21
D31V8, multiclass
     clus
vv    DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  I                         5                            19
  II                        6                            31
  III                       7                            32
  IV                        5                            21
D31V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.2) CNV          1   33
  DEL PEAK  2(1P13.2) WILD-TYPE    4  142
     clus
vv    DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  NO                        1                             4
  YES                      33                           142
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  2(1P13.2) CNV        22   1   4   3
  DEL PEAK  2(1P13.2) WILD-TYPE 103   6   8  22
D31V10, multiclass
    clus
vv   DEL PEAK  2(1P13.2) CNV DEL PEAK  2(1P13.2) WILD-TYPE
  R0                      22                           103
  R1                       1                             6
  R2                       4                             8
  RX                       3                            22
D31V11, continuous

Clustering(32) Variable = Del Peak  3(1q44)
D32V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  3(1Q44) CNV         5   4
  DEL PEAK  3(1Q44) WILD-TYPE 119  15
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                          9                         134 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                          4                          15 
$`DEL PEAK  3(1Q44) CNV`
TCGA-CD-5801 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
        0.49         1.02        14.01        18.94         7.07         1.02 
TCGA-CG-5724 TCGA-D7-6519 TCGA-IP-7968 
       12.03        15.65         2.53 

$`DEL PEAK  3(1Q44) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.05         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-BR-A4PF TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.72         0.49         2.24         0.82         0.69         0.36 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.30         0.07        20.02         3.02        27.02        15.95 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 
       52.96         8.05        54.05         4.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 
       19.07        12.03        21.99         1.02         8.98        12.00 
TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        3.58         4.54         9.80         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        4.70         4.04         2.93         4.27         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 
        3.58         1.02        59.05         5.03         0.56        26.43 
TCGA-IN-7806 TCGA-IN-7808 
        6.87         3.55 

      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                       0.49                        0.07 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                      18.94                       72.23 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                       7.07                        1.22 
[1] "0.5 - 18.9 (7.1)" "0.1 - 72.2 (1.2)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4441                  TCGA-CG-4443 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IP-7968 
      "DEL PEAK  3(1Q44) CNV" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4441                  TCGA-CG-4443 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IP-7968 
      "DEL PEAK  3(1Q44) CNV" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5801                  TCGA-CD-5802 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4441                  TCGA-CG-4443 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-4472                  TCGA-CG-4474 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6526                  TCGA-D7-6527 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IP-7968 
      "DEL PEAK  3(1Q44) CNV" 
[1] "hr=" "3.5"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) CNV          4    8
  DEL PEAK  3(1Q44) WILD-TYPE   68  100
        clus
vv       DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  FEMALE                     4                          68
  MALE                       8                         100
                             vv
clus                          STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  3(1Q44) CNV                                           0
  DEL PEAK  3(1Q44) WILD-TYPE                                    10
                             vv
clus                          STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  3(1Q44) CNV                                                            0
  DEL PEAK  3(1Q44) WILD-TYPE                                                     16
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  3(1Q44) CNV                                                                       0
  DEL PEAK  3(1Q44) WILD-TYPE                                                                 8
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  3(1Q44) CNV                                                              0
  DEL PEAK  3(1Q44) WILD-TYPE                                                        3
                             vv
clus                          STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  3(1Q44) CNV                                              0
  DEL PEAK  3(1Q44) WILD-TYPE                                        1
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  3(1Q44) CNV                                           2
  DEL PEAK  3(1Q44) WILD-TYPE                                    14
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  3(1Q44) CNV                                                            5
  DEL PEAK  3(1Q44) WILD-TYPE                                                     68
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  3(1Q44) CNV                                                       0
  DEL PEAK  3(1Q44) WILD-TYPE                                                 7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  3(1Q44) CNV                                                        0
  DEL PEAK  3(1Q44) WILD-TYPE                                                  3
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  3(1Q44) CNV                                                      0
  DEL PEAK  3(1Q44) WILD-TYPE                                               10
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  3(1Q44) CNV                                                                            4
  DEL PEAK  3(1Q44) WILD-TYPE                                                                     24
D32V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  3(1Q44) CNV        0  4  7  0
  DEL PEAK  3(1Q44) WILD-TYPE  6 48 49 18
D32V5, multiclass
    clus
vv   DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  T1                     0                           6
  T2                     4                          48
  T3                     7                          49
  T4                     0                          18
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK  3(1Q44) CNV        2  4  3  2
  DEL PEAK  3(1Q44) WILD-TYPE 42 45 20 13
D32V6, multiclass
    clus
vv   DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  N0                     2                          42
  N1                     4                          45
  N2                     3                          20
  N3                     2                          13
                             vv
clus                           M0  M1  MX
  DEL PEAK  3(1Q44) CNV         9   2   1
  DEL PEAK  3(1Q44) WILD-TYPE 109  14   7
D32V7, multiclass
    clus
vv   DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  M0                     9                         109
  M1                     2                          14
  MX                     1                           7
                             vv
clus                           I II III IV
  DEL PEAK  3(1Q44) CNV        2  2   4  3
  DEL PEAK  3(1Q44) WILD-TYPE 22 35  35 23
D32V8, multiclass
     clus
vv    DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  I                       2                          22
  II                      2                          35
  III                     4                          35
  IV                      3                          23
D32V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) CNV          0   12
  DEL PEAK  3(1Q44) WILD-TYPE    5  163
     clus
vv    DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  NO                      0                           5
  YES                    12                         163
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK  3(1Q44) CNV         6   1   2   1
  DEL PEAK  3(1Q44) WILD-TYPE 119   6  10  24
D32V10, multiclass
    clus
vv   DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  R0                     6                         119
  R1                     1                           6
  R2                     2                          10
  RX                     1                          24
D32V11, continuous

Clustering(33) Variable = Del Peak  4(2q32.1)
D33V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  4(2Q32.1) CNV        11   4
  DEL PEAK  4(2Q32.1) WILD-TYPE 113  15
      DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE 
                           15                           128 
      DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE 
                            4                            15 
$`DEL PEAK  4(2Q32.1) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8286 TCGA-CG-4300 
        1.35         0.62         0.69         0.49         0.43        20.02 
TCGA-CG-4444 TCGA-CG-4462 TCGA-CG-4472 TCGA-CG-5720 TCGA-CG-5724 TCGA-CG-5725 
       47.05         1.02        12.00         0.99        12.03        15.02 
TCGA-D7-5578 TCGA-D7-5579 TCGA-HJ-7597 
        3.58         4.54        26.43 

$`DEL PEAK  4(2Q32.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8081 
        0.16         1.08         0.82         1.32         0.95         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.72         0.26         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.76         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.72         0.79         0.53         0.43         0.13         0.23 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 
        0.10         0.72         0.49         2.24         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        0.36         0.49         0.30         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4465 
       14.01        29.98        19.07        12.03        21.99         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94         7.07         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         1.02         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        8.65         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        4.70         4.04         2.93         4.27         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-IN-7806 
        3.58         1.02        59.05         5.03         0.56         6.87 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

      DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE 
                         0.43                          0.07 
      DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE 
                        47.05                         72.23 
      DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE 
                         3.58                          1.22 
[1] "0.4 - 47.0 (3.6)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK  4(2Q32.1) CNV" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  4(2Q32.1) WILD-TYPE"       "DEL PEAK  4(2Q32.1) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" 
[1] "hr=" "1.7"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) CNV          8   13
  DEL PEAK  4(2Q32.1) WILD-TYPE   64   95
        clus
vv       DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE
  FEMALE                       8                            64
  MALE                        13                            95
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  4(2Q32.1) CNV                                           0
  DEL PEAK  4(2Q32.1) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  4(2Q32.1) CNV                                                            1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                     15
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  4(2Q32.1) CNV                                                                       1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                                 7
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  4(2Q32.1) CNV                                                              1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  4(2Q32.1) CNV                                              1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  4(2Q32.1) CNV                                           2
  DEL PEAK  4(2Q32.1) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  4(2Q32.1) CNV                                                            9
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                     64
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  4(2Q32.1) CNV                                                       2
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  4(2Q32.1) CNV                                                        0
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  4(2Q32.1) CNV                                                      1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                9
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  4(2Q32.1) CNV                                                                            0
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                                     28
D33V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  4(2Q32.1) CNV        0  4  9  2
  DEL PEAK  4(2Q32.1) WILD-TYPE  6 48 47 16
D33V5, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE
  T1                       0                             6
  T2                       4                            48
  T3                       9                            47
  T4                       2                            16
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  4(2Q32.1) CNV        3  4  4  4
  DEL PEAK  4(2Q32.1) WILD-TYPE 41 45 19 11
D33V6, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE
  N0                       3                            41
  N1                       4                            45
  N2                       4                            19
  N3                       4                            11
                               vv
clus                             M0  M1  MX
  DEL PEAK  4(2Q32.1) CNV        14   2   1
  DEL PEAK  4(2Q32.1) WILD-TYPE 104  14   7
D33V7, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE
  M0                      14                           104
  M1                       2                            14
  MX                       1                             7
                               vv
clus                             I II III IV
  DEL PEAK  4(2Q32.1) CNV        2  5   3  4
  DEL PEAK  4(2Q32.1) WILD-TYPE 22 32  36 22
D33V8, multiclass
     clus
vv    DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE
  I                         2                            22
  II                        5                            32
  III                       3                            36
  IV                        4                            22
D33V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) CNV          1   20
  DEL PEAK  4(2Q32.1) WILD-TYPE    4  155
     clus
vv    DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE
  NO                        1                             4
  YES                      20                           155
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  4(2Q32.1) CNV        14   2   2   3
  DEL PEAK  4(2Q32.1) WILD-TYPE 111   5  10  22
D33V10, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) CNV DEL PEAK  4(2Q32.1) WILD-TYPE
  R0                      14                           111
  R1                       2                             5
  R2                       2                            10
  RX                       3                            22
D33V11, continuous

Clustering(34) Variable = Del Peak  5(2q37.2)
D34V1, survival
                               sevent
clus2                             0   1
  DEL PEAK  5(2Q37.2) CNV        20   2
  DEL PEAK  5(2Q37.2) WILD-TYPE 104  17
      DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE 
                           22                           121 
      DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE 
                            2                            17 
$`DEL PEAK  5(2Q37.2) CNV`
TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7704 TCGA-BR-7901 TCGA-BR-8059 TCGA-BR-8060 
        0.62         1.22         1.25         0.95         0.82         1.32 
TCGA-BR-8080 TCGA-BR-8286 TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4437 TCGA-CG-4441 
        0.49         0.43         0.36        20.02         8.05        14.01 
TCGA-CG-4449 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5719 TCGA-D7-5578 TCGA-D7-6519 
       19.07        18.94        12.00         1.02         3.58        15.65 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6822 TCGA-HJ-7597 
        1.68         3.65         4.27        26.43 

$`DEL PEAK  5(2Q37.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8289 
        0.69         0.95         0.46         0.72         0.26         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.92         0.39         0.79         0.72         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.43         0.13         0.23         0.10         0.72         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        2.24         0.82         0.69         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 
        3.02        27.02        15.95         1.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
        4.01        29.98        47.05        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        8.98         7.07         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 
       21.07         7.99         8.65         4.54         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 
        4.70         4.04         2.93         0.62         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-IN-7806 TCGA-IN-7808 
        1.02        59.05         5.03         0.56         6.87         3.55 
TCGA-IP-7968 
        2.53 

      DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE 
                         0.36                          0.07 
      DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE 
                        26.43                         72.23 
      DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE 
                         2.63                          1.12 
[1] "0.4 - 26.4 (2.6)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK  5(2Q37.2) CNV"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  5(2Q37.2) CNV"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK  5(2Q37.2) CNV"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  5(2Q37.2) CNV"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK  5(2Q37.2) CNV"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  5(2Q37.2) CNV" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  5(2Q37.2) CNV"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  5(2Q37.2) WILD-TYPE"       "DEL PEAK  5(2Q37.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK  5(2Q37.2) WILD-TYPE" "DEL PEAK  5(2Q37.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  5(2Q37.2) WILD-TYPE" 
[1] "hr=" "1.6"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.2) CNV         13   12
  DEL PEAK  5(2Q37.2) WILD-TYPE   59   96
        clus
vv       DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE
  FEMALE                      13                            59
  MALE                        12                            96
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  5(2Q37.2) CNV                                           0
  DEL PEAK  5(2Q37.2) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  5(2Q37.2) CNV                                                            2
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                     14
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  5(2Q37.2) CNV                                                                       1
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                                 7
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  5(2Q37.2) CNV                                                              1
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  5(2Q37.2) CNV                                              1
  DEL PEAK  5(2Q37.2) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  5(2Q37.2) CNV                                           2
  DEL PEAK  5(2Q37.2) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  5(2Q37.2) CNV                                                            5
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                     68
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  5(2Q37.2) CNV                                                       1
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  5(2Q37.2) CNV                                                        1
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  5(2Q37.2) CNV                                                      4
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  5(2Q37.2) CNV                                                                            6
  DEL PEAK  5(2Q37.2) WILD-TYPE                                                                     22
D34V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  5(2Q37.2) CNV        1  9  7  3
  DEL PEAK  5(2Q37.2) WILD-TYPE  5 43 49 15
D34V5, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE
  T1                       1                             5
  T2                       9                            43
  T3                       7                            49
  T4                       3                            15
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  5(2Q37.2) CNV        9  5  5  1
  DEL PEAK  5(2Q37.2) WILD-TYPE 35 44 18 14
D34V6, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE
  N0                       9                            35
  N1                       5                            44
  N2                       5                            18
  N3                       1                            14
                               vv
clus                             M0  M1  MX
  DEL PEAK  5(2Q37.2) CNV        18   1   1
  DEL PEAK  5(2Q37.2) WILD-TYPE 100  15   7
D34V7, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE
  M0                      18                           100
  M1                       1                            15
  MX                       1                             7
                               vv
clus                             I II III IV
  DEL PEAK  5(2Q37.2) CNV        5  6   7  2
  DEL PEAK  5(2Q37.2) WILD-TYPE 19 31  32 24
D34V8, multiclass
     clus
vv    DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE
  I                         5                            19
  II                        6                            31
  III                       7                            32
  IV                        2                            24
D34V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.2) CNV          1   24
  DEL PEAK  5(2Q37.2) WILD-TYPE    4  151
     clus
vv    DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE
  NO                        1                             4
  YES                      24                           151
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  5(2Q37.2) CNV        23   1   0   0
  DEL PEAK  5(2Q37.2) WILD-TYPE 102   6  12  25
D34V10, multiclass
    clus
vv   DEL PEAK  5(2Q37.2) CNV DEL PEAK  5(2Q37.2) WILD-TYPE
  R0                      23                           102
  R1                       1                             6
  R2                       0                            12
  RX                       0                            25
D34V11, continuous

Clustering(35) Variable = Del Peak  6(3p26.1)
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(3P26.1) CNV       41  5
  DEL PEAK  6(3P26.1) WILD-TYPE 83 14
      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                           46                            97 
      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                            5                            14 
$`DEL PEAK  6(3P26.1) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6803 TCGA-BR-7715 TCGA-BR-7716 
        1.35         0.62         1.71         0.66         1.05         0.82 
TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8077 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8297 
        0.69         1.08         0.69         0.26         1.18         0.76 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.39         0.72         0.53         0.23         0.72         0.49 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4437 
        0.69         0.49        20.02         3.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4466 
       54.05         4.01        14.01        47.05        12.03        18.94 
TCGA-CG-5718 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5578 TCGA-D7-6525 
        1.02        70.06        15.02         4.01         3.58         5.95 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 
        6.61         1.68         4.70         0.62         7.79         0.20 
TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7806 
        3.02         1.02         0.56         6.87 

$`DEL PEAK  6(3P26.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.82         0.62         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.25         0.13         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8080 
        0.95         0.16         0.82         1.32         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8295 TCGA-BR-8296 
        0.46         0.72         0.26         0.43         1.55         1.48 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 
        0.20         0.59         0.92         0.79         0.79         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 
        0.13         0.10         2.24         0.82         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4443 TCGA-CG-4449 
        0.07        27.02        15.95         1.02        29.98        19.07 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
        0.95        12.03        28.96        31.04        65.10        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       21.07         7.99         8.65         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6815 
        9.63         8.19         6.90         0.69         4.14         3.65 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.04         2.93         4.27         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7808 
        0.39         3.58        59.05         5.03        26.43         3.55 
TCGA-IP-7968 
        2.53 

      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                         0.20                          0.07 
      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                        70.06                         72.23 
      DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE 
                        1.265                         1.250 
[1] "0.2 - 70.1 (1.3)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  6(3P26.1) CNV"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  6(3P26.1) WILD-TYPE"       "DEL PEAK  6(3P26.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  6(3P26.1) WILD-TYPE" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  6(3P26.1) CNV" "DEL PEAK  6(3P26.1) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  6(3P26.1) WILD-TYPE" 
[1] "hr=" "1.2"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.1) CNV         20   34
  DEL PEAK  6(3P26.1) WILD-TYPE   52   74
        clus
vv       DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  FEMALE                      20                            52
  MALE                        34                            74
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  6(3P26.1) CNV                                           3
  DEL PEAK  6(3P26.1) WILD-TYPE                                     7
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  6(3P26.1) CNV                                                            7
  DEL PEAK  6(3P26.1) WILD-TYPE                                                      9
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  6(3P26.1) CNV                                                                       4
  DEL PEAK  6(3P26.1) WILD-TYPE                                                                 4
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  6(3P26.1) CNV                                                              1
  DEL PEAK  6(3P26.1) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  6(3P26.1) CNV                                              0
  DEL PEAK  6(3P26.1) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  6(3P26.1) CNV                                           4
  DEL PEAK  6(3P26.1) WILD-TYPE                                    12
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  6(3P26.1) CNV                                                           18
  DEL PEAK  6(3P26.1) WILD-TYPE                                                     55
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  6(3P26.1) CNV                                                       2
  DEL PEAK  6(3P26.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  6(3P26.1) CNV                                                        0
  DEL PEAK  6(3P26.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  6(3P26.1) CNV                                                      4
  DEL PEAK  6(3P26.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  6(3P26.1) CNV                                                                           10
  DEL PEAK  6(3P26.1) WILD-TYPE                                                                     18
D35V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  6(3P26.1) CNV        0 15 16  5
  DEL PEAK  6(3P26.1) WILD-TYPE  6 37 40 13
D35V5, multiclass
    clus
vv   DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  T1                       0                             6
  T2                      15                            37
  T3                      16                            40
  T4                       5                            13
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  6(3P26.1) CNV        8 15  9  4
  DEL PEAK  6(3P26.1) WILD-TYPE 36 34 14 11
D35V6, multiclass
    clus
vv   DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  N0                       8                            36
  N1                      15                            34
  N2                       9                            14
  N3                       4                            11
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(3P26.1) CNV       32  5  2
  DEL PEAK  6(3P26.1) WILD-TYPE 86 11  6
D35V7, multiclass
    clus
vv   DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  M0                      32                            86
  M1                       5                            11
  MX                       2                             6
                               vv
clus                             I II III IV
  DEL PEAK  6(3P26.1) CNV        5 10  13  7
  DEL PEAK  6(3P26.1) WILD-TYPE 19 27  26 19
D35V8, multiclass
     clus
vv    DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  I                         5                            19
  II                       10                            27
  III                      13                            26
  IV                        7                            19
D35V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3P26.1) CNV          1   53
  DEL PEAK  6(3P26.1) WILD-TYPE    4  122
     clus
vv    DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  NO                        1                             4
  YES                      53                           122
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  6(3P26.1) CNV       41  0  4  5
  DEL PEAK  6(3P26.1) WILD-TYPE 84  7  8 20
D35V10, multiclass
    clus
vv   DEL PEAK  6(3P26.1) CNV DEL PEAK  6(3P26.1) WILD-TYPE
  R0                      41                            84
  R1                       0                             7
  R2                       4                             8
  RX                       5                            20
D35V11, continuous

Clustering(36) Variable = Del Peak  7(3p14.2)
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(3P14.2) CNV       50  7
  DEL PEAK  7(3P14.2) WILD-TYPE 74 12
      DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE 
                           57                            86 
      DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE 
                            7                            12 
$`DEL PEAK  7(3P14.2) CNV`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6803 TCGA-BR-6852 
        5.62         1.35         0.62         1.71         0.66         0.26 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7959 
        1.05         0.82         0.16         0.95         0.69         1.08 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8289 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J4 
        1.32         0.69         0.26         0.39         0.72         0.53 
TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        0.23         0.72         0.49         0.69         0.36         0.49 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       20.02         3.02        15.95        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-5718 
        4.01        14.01        47.05        12.03        18.94         1.02 
TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5577 TCGA-D7-6519 
        1.02        12.03        15.02         4.01         8.65        15.65 
TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 
        9.63         5.95         6.61         4.14         1.68         4.70 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 
        4.27         0.62         7.79         0.20         3.02         1.02 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 
        0.56        26.43         6.87 

$`DEL PEAK  7(3P14.2) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        0.62         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.76         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8078 
        0.69         4.54         0.99         0.16         0.82         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 
        0.49         0.46         0.72         0.26         0.43         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4QL 
        0.79         0.79         0.43         0.13         0.10         2.24 
TCGA-CD-5798 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4443 
        0.82         0.30         0.07        27.02         1.02        29.98 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 
       19.07        21.99         1.02         8.98         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         1.02         6.94         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
        0.95        70.06        28.96        31.04        65.10        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 
       21.07         7.99         3.58         4.54         9.80         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6177 
        6.90         0.69         3.65         4.04         2.93         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        2.01        72.23         0.39         3.58        59.05         5.03 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

      DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE 
                         0.16                          0.07 
      DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE 
                        54.05                         72.23 
      DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE 
                         1.68                          1.20 
[1] "0.2 - 54.0 (1.7)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  7(3P14.2) WILD-TYPE"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK  7(3P14.2) CNV"       "DEL PEAK  7(3P14.2) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  7(3P14.2) CNV" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK  7(3P14.2) WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) CNV         29   35
  DEL PEAK  7(3P14.2) WILD-TYPE   43   73
        clus
vv       DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE
  FEMALE                      29                            43
  MALE                        35                            73
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  7(3P14.2) CNV                                           1
  DEL PEAK  7(3P14.2) WILD-TYPE                                     9
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  7(3P14.2) CNV                                                            8
  DEL PEAK  7(3P14.2) WILD-TYPE                                                      8
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  7(3P14.2) CNV                                                                       4
  DEL PEAK  7(3P14.2) WILD-TYPE                                                                 4
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  7(3P14.2) CNV                                                              1
  DEL PEAK  7(3P14.2) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  7(3P14.2) CNV                                              1
  DEL PEAK  7(3P14.2) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  7(3P14.2) CNV                                           7
  DEL PEAK  7(3P14.2) WILD-TYPE                                     9
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  7(3P14.2) CNV                                                           20
  DEL PEAK  7(3P14.2) WILD-TYPE                                                     53
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  7(3P14.2) CNV                                                       2
  DEL PEAK  7(3P14.2) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  7(3P14.2) CNV                                                        2
  DEL PEAK  7(3P14.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  7(3P14.2) CNV                                                      6
  DEL PEAK  7(3P14.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  7(3P14.2) CNV                                                                           11
  DEL PEAK  7(3P14.2) WILD-TYPE                                                                     17
D36V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  7(3P14.2) CNV        0 20 21  7
  DEL PEAK  7(3P14.2) WILD-TYPE  6 32 35 11
D36V5, multiclass
    clus
vv   DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE
  T1                       0                             6
  T2                      20                            32
  T3                      21                            35
  T4                       7                            11
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  7(3P14.2) CNV       13 20  9  6
  DEL PEAK  7(3P14.2) WILD-TYPE 31 29 14  9
D36V6, multiclass
    clus
vv   DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE
  N0                      13                            31
  N1                      20                            29
  N2                       9                            14
  N3                       6                             9
                               vv
clus                            M0 M1 MX
  DEL PEAK  7(3P14.2) CNV       41  7  1
  DEL PEAK  7(3P14.2) WILD-TYPE 77  9  7
D36V7, multiclass
    clus
vv   DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE
  M0                      41                            77
  M1                       7                             9
  MX                       1                             7
                               vv
clus                             I II III IV
  DEL PEAK  7(3P14.2) CNV        6 13  20  9
  DEL PEAK  7(3P14.2) WILD-TYPE 18 24  19 17
D36V8, multiclass
     clus
vv    DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE
  I                         6                            18
  II                       13                            24
  III                      20                            19
  IV                        9                            17
D36V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) CNV          2   62
  DEL PEAK  7(3P14.2) WILD-TYPE    3  113
     clus
vv    DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE
  NO                        2                             3
  YES                      62                           113
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  7(3P14.2) CNV       51  0  5  3
  DEL PEAK  7(3P14.2) WILD-TYPE 74  7  7 22
D36V10, multiclass
    clus
vv   DEL PEAK  7(3P14.2) CNV DEL PEAK  7(3P14.2) WILD-TYPE
  R0                      51                            74
  R1                       0                             7
  R2                       5                             7
  RX                       3                            22
D36V11, continuous

Clustering(37) Variable = Del Peak  8(3q26.31)
D37V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  8(3Q26.31) CNV        14   2
  DEL PEAK  8(3Q26.31) WILD-TYPE 110  17
      DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE 
                            16                            127 
      DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE 
                             2                             17 
$`DEL PEAK  8(3Q26.31) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7715 TCGA-BR-7959 TCGA-BR-8077 TCGA-BR-A4IY 
        1.35         0.62         1.05         1.08         0.69         0.39 
TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4466 
        0.72         0.23         0.72        54.05        14.01        18.94 
TCGA-D7-5578 TCGA-D7-6526 TCGA-EQ-8122 TCGA-IN-7806 
        3.58         6.61         7.79         6.87 

$`DEL PEAK  8(3Q26.31) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        0.82         1.32         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.76         0.20         0.59         0.92         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL 
        0.53         0.43         0.13         0.10         0.49         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        8.05         4.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        8.65         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         0.69         5.95         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
        1.02        59.05         5.03         0.56        26.43         3.55 
TCGA-IP-7968 
        2.53 

      DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE 
                          0.23                           0.07 
      DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE 
                         54.05                          72.23 
      DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE 
                         1.215                          1.250 
[1] "0.2 - 54.0 (1.2)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK  8(3Q26.31) WILD-TYPE"       "DEL PEAK  8(3Q26.31) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK  8(3Q26.31) WILD-TYPE" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK  8(3Q26.31) CNV" "DEL PEAK  8(3Q26.31) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK  8(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q26.31) CNV          8   12
  DEL PEAK  8(3Q26.31) WILD-TYPE   64   96
        clus
vv       DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE
  FEMALE                        8                             64
  MALE                         12                             96
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  8(3Q26.31) CNV                                           0
  DEL PEAK  8(3Q26.31) WILD-TYPE                                    10
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  8(3Q26.31) CNV                                                            4
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                     12
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  8(3Q26.31) CNV                                                                       2
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  8(3Q26.31) CNV                                                              1
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  8(3Q26.31) CNV                                              0
  DEL PEAK  8(3Q26.31) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  8(3Q26.31) CNV                                           1
  DEL PEAK  8(3Q26.31) WILD-TYPE                                    15
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  8(3Q26.31) CNV                                                            7
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                     66
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  8(3Q26.31) CNV                                                       0
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  8(3Q26.31) CNV                                                        0
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  8(3Q26.31) CNV                                                      2
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  8(3Q26.31) CNV                                                                            3
  DEL PEAK  8(3Q26.31) WILD-TYPE                                                                     25
D37V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  8(3Q26.31) CNV        0  3  7  1
  DEL PEAK  8(3Q26.31) WILD-TYPE  6 49 49 17
D37V5, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE
  T1                        0                              6
  T2                        3                             49
  T3                        7                             49
  T4                        1                             17
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK  8(3Q26.31) CNV        4  3  4  0
  DEL PEAK  8(3Q26.31) WILD-TYPE 40 46 19 15
D37V6, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE
  N0                        4                             40
  N1                        3                             46
  N2                        4                             19
  N3                        0                             15
                                vv
clus                              M0  M1  MX
  DEL PEAK  8(3Q26.31) CNV        11   0   2
  DEL PEAK  8(3Q26.31) WILD-TYPE 107  16   6
D37V7, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE
  M0                       11                            107
  M1                        0                             16
  MX                        2                              6
                                vv
clus                              I II III IV
  DEL PEAK  8(3Q26.31) CNV        2  4   3  1
  DEL PEAK  8(3Q26.31) WILD-TYPE 22 33  36 25
D37V8, multiclass
     clus
vv    DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE
  I                          2                             22
  II                         4                             33
  III                        3                             36
  IV                         1                             25
D37V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  8(3Q26.31) CNV          1   19
  DEL PEAK  8(3Q26.31) WILD-TYPE    4  156
     clus
vv    DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE
  NO                         1                              4
  YES                       19                            156
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK  8(3Q26.31) CNV        16   0   0   3
  DEL PEAK  8(3Q26.31) WILD-TYPE 109   7  12  22
D37V10, multiclass
    clus
vv   DEL PEAK  8(3Q26.31) CNV DEL PEAK  8(3Q26.31) WILD-TYPE
  R0                       16                            109
  R1                        0                              7
  R2                        0                             12
  RX                        3                             22
D37V11, continuous

Clustering(38) Variable = Del Peak  9(4p16.3)
D38V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(4P16.3) CNV       44  6
  DEL PEAK  9(4P16.3) WILD-TYPE 80 13
      DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE 
                           50                            93 
      DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE 
                            6                            13 
$`DEL PEAK  9(4P16.3) CNV`
TCGA-BR-6565 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7715 TCGA-BR-7716 
        0.62         0.66         1.48         0.46         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8080 
        0.69         4.54         0.95         0.69         1.08         0.49 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-CD-5802 
        0.72         0.13         0.23         0.10         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
        0.07        20.02        52.96         8.05        54.05         4.01 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-5725 
       47.05        19.07        12.03        18.94         7.07        15.02 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        9.80        15.65         9.63         6.61         4.14         1.68 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-8099 TCGA-HJ-7597 
        2.93         7.79        72.23         3.02         1.02        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

$`DEL PEAK  9(4P16.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 
        1.22         0.66         1.12         0.76         0.26         1.22 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7958 TCGA-BR-8059 
        1.25         0.13         0.16         0.99         0.16         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        1.32         0.69         0.95         0.46         0.72         0.26 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 
        0.53         0.43         0.72         2.24         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.36         0.49         3.02        27.02        15.95         1.02 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 
       14.01        29.98        21.99         1.02         8.98        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        12.03        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        8.65         3.58         4.54         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 
        5.95         3.65         4.70         4.04         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 
        6.54         2.01         0.39         0.20         3.58        59.05 
TCGA-FP-8210 TCGA-FP-8631 TCGA-IN-7808 
        5.03         0.56         3.55 

      DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE 
                        72.23                         70.06 
      DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE 
                        1.615                         1.120 
[1] "0.1 - 72.2 (1.6)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK  9(4P16.3) CNV"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK  9(4P16.3) WILD-TYPE" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK  9(4P16.3) WILD-TYPE"       "DEL PEAK  9(4P16.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK  9(4P16.3) CNV" "DEL PEAK  9(4P16.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK  9(4P16.3) CNV" 
[1] "hr=" "1.7"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4P16.3) CNV         23   40
  DEL PEAK  9(4P16.3) WILD-TYPE   49   68
        clus
vv       DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE
  FEMALE                      23                            49
  MALE                        40                            68
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK  9(4P16.3) CNV                                           3
  DEL PEAK  9(4P16.3) WILD-TYPE                                     7
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  9(4P16.3) CNV                                                            8
  DEL PEAK  9(4P16.3) WILD-TYPE                                                      8
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  9(4P16.3) CNV                                                                       3
  DEL PEAK  9(4P16.3) WILD-TYPE                                                                 5
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK  9(4P16.3) CNV                                                              2
  DEL PEAK  9(4P16.3) WILD-TYPE                                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK  9(4P16.3) CNV                                              1
  DEL PEAK  9(4P16.3) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  9(4P16.3) CNV                                           5
  DEL PEAK  9(4P16.3) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  9(4P16.3) CNV                                                           23
  DEL PEAK  9(4P16.3) WILD-TYPE                                                     50
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  9(4P16.3) CNV                                                       3
  DEL PEAK  9(4P16.3) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  9(4P16.3) CNV                                                        2
  DEL PEAK  9(4P16.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  9(4P16.3) CNV                                                      5
  DEL PEAK  9(4P16.3) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  9(4P16.3) CNV                                                                            7
  DEL PEAK  9(4P16.3) WILD-TYPE                                                                     21
D38V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  9(4P16.3) CNV        1 16 20  4
  DEL PEAK  9(4P16.3) WILD-TYPE  5 36 36 14
D38V5, multiclass
    clus
vv   DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE
  T1                       1                             5
  T2                      16                            36
  T3                      20                            36
  T4                       4                            14
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  9(4P16.3) CNV       12 17  8  5
  DEL PEAK  9(4P16.3) WILD-TYPE 32 32 15 10
D38V6, multiclass
    clus
vv   DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE
  N0                      12                            32
  N1                      17                            32
  N2                       8                            15
  N3                       5                            10
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(4P16.3) CNV       42  2  2
  DEL PEAK  9(4P16.3) WILD-TYPE 76 14  6
D38V7, multiclass
    clus
vv   DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE
  M0                      42                            76
  M1                       2                            14
  MX                       2                             6
                               vv
clus                             I II III IV
  DEL PEAK  9(4P16.3) CNV        6 13  12  8
  DEL PEAK  9(4P16.3) WILD-TYPE 18 24  27 18
D38V8, multiclass
     clus
vv    DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE
  I                         6                            18
  II                       13                            24
  III                      12                            27
  IV                        8                            18
D38V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4P16.3) CNV          2   61
  DEL PEAK  9(4P16.3) WILD-TYPE    3  114
     clus
vv    DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE
  NO                        2                             3
  YES                      61                           114
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  9(4P16.3) CNV       44  4  1  9
  DEL PEAK  9(4P16.3) WILD-TYPE 81  3 11 16
D38V10, multiclass
    clus
vv   DEL PEAK  9(4P16.3) CNV DEL PEAK  9(4P16.3) WILD-TYPE
  R0                      44                            81
  R1                       4                             3
  R2                       1                            11
  RX                       9                            16
D38V11, continuous

Clustering(39) Variable = Del Peak 10(4q22.1)
D39V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(4Q22.1) CNV       55  7
  DEL PEAK 10(4Q22.1) WILD-TYPE 69 12
      DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE 
                           62                            81 
      DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE 
                            7                            12 
$`DEL PEAK 10(4Q22.1) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7716 TCGA-BR-7717 
        1.35         0.62         1.12         0.66         0.82         0.69 
TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8286 
        0.69         1.08         0.82         0.69         0.49         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-A4J1 TCGA-BR-A4J6 
        0.26         1.18         1.55         1.48         0.72         0.13 
TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        0.23         0.72         0.49         0.69         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        0.07        20.02         3.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 
        4.01        47.05        19.07        12.03        18.94         7.07 
TCGA-CG-4477 TCGA-CG-5720 TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
        1.02         0.99        12.03        31.04         4.01        55.04 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6526 
        8.65         3.58         4.54         9.80        15.65         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 
        4.14         1.68         3.65         4.04         2.93         0.62 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 
        7.79        72.23         0.39         0.20         3.02         1.02 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

$`DEL PEAK 10(4Q22.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.66         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.25         0.13         1.05         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 
        0.95         0.16         1.32         0.95         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        0.26         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-BR-A4QL 
        0.79         0.79         0.53         0.43         0.10         2.24 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 
        0.82         0.49        27.02        15.95         1.02        14.01 
TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 
       29.98        21.99         1.02         8.98        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         1.02         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 
       70.06        15.02        28.96        65.10        21.07         7.99 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6817 
        9.63         8.19         6.90         0.69         5.95         4.70 
TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        4.27         6.54         2.01         3.58        59.05         5.03 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7808 
        0.56        26.43         3.55 

      DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE 
                        72.23                         70.06 
      DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE 
                        1.615                         1.050 
[1] "0.1 - 72.2 (1.6)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 10(4Q22.1) CNV"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 10(4Q22.1) WILD-TYPE"       "DEL PEAK 10(4Q22.1) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 10(4Q22.1) WILD-TYPE" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 10(4Q22.1) CNV" "DEL PEAK 10(4Q22.1) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 10(4Q22.1) CNV" 
[1] "hr=" "1.6"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q22.1) CNV         31   44
  DEL PEAK 10(4Q22.1) WILD-TYPE   41   64
        clus
vv       DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE
  FEMALE                      31                            41
  MALE                        44                            64
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 10(4Q22.1) CNV                                           2
  DEL PEAK 10(4Q22.1) WILD-TYPE                                     8
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 10(4Q22.1) CNV                                                            8
  DEL PEAK 10(4Q22.1) WILD-TYPE                                                      8
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 10(4Q22.1) CNV                                                                       5
  DEL PEAK 10(4Q22.1) WILD-TYPE                                                                 3
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 10(4Q22.1) CNV                                                              2
  DEL PEAK 10(4Q22.1) WILD-TYPE                                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 10(4Q22.1) CNV                                              0
  DEL PEAK 10(4Q22.1) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 10(4Q22.1) CNV                                           7
  DEL PEAK 10(4Q22.1) WILD-TYPE                                     9
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 10(4Q22.1) CNV                                                           23
  DEL PEAK 10(4Q22.1) WILD-TYPE                                                     50
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 10(4Q22.1) CNV                                                       5
  DEL PEAK 10(4Q22.1) WILD-TYPE                                                 2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 10(4Q22.1) CNV                                                        2
  DEL PEAK 10(4Q22.1) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 10(4Q22.1) CNV                                                      7
  DEL PEAK 10(4Q22.1) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 10(4Q22.1) CNV                                                                           12
  DEL PEAK 10(4Q22.1) WILD-TYPE                                                                     16
D39V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 10(4Q22.1) CNV        0 24 22  7
  DEL PEAK 10(4Q22.1) WILD-TYPE  6 28 34 11
D39V5, multiclass
    clus
vv   DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE
  T1                       0                             6
  T2                      24                            28
  T3                      22                            34
  T4                       7                            11
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 10(4Q22.1) CNV       15 20  9 10
  DEL PEAK 10(4Q22.1) WILD-TYPE 29 29 14  5
D39V6, multiclass
    clus
vv   DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE
  N0                      15                            29
  N1                      20                            29
  N2                       9                            14
  N3                      10                             5
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(4Q22.1) CNV       49  6  3
  DEL PEAK 10(4Q22.1) WILD-TYPE 69 10  5
D39V7, multiclass
    clus
vv   DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE
  M0                      49                            69
  M1                       6                            10
  MX                       3                             5
                               vv
clus                             I II III IV
  DEL PEAK 10(4Q22.1) CNV        8 16  14 14
  DEL PEAK 10(4Q22.1) WILD-TYPE 16 21  25 12
D39V8, multiclass
     clus
vv    DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE
  I                         8                            16
  II                       16                            21
  III                      14                            25
  IV                       14                            12
D39V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q22.1) CNV          4   71
  DEL PEAK 10(4Q22.1) WILD-TYPE    1  104
     clus
vv    DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE
  NO                        4                             1
  YES                      71                           104
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 10(4Q22.1) CNV       50  5  5  8
  DEL PEAK 10(4Q22.1) WILD-TYPE 75  2  7 17
D39V10, multiclass
    clus
vv   DEL PEAK 10(4Q22.1) CNV DEL PEAK 10(4Q22.1) WILD-TYPE
  R0                      50                            75
  R1                       5                             2
  R2                       5                             7
  RX                       8                            17
D39V11, continuous

Clustering(40) Variable = Del Peak 11(4q34.3)
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(4Q34.3) CNV       55  6
  DEL PEAK 11(4Q34.3) WILD-TYPE 69 13
      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                           61                            82 
      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                            6                            13 
$`DEL PEAK 11(4Q34.3) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7197 
        1.35         0.62         1.71         1.22         0.66         1.48 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7959 
        1.05         0.69         4.54         0.99         0.69         1.08 
TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.82         0.69         0.49         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF 
        1.48         0.76         0.72         0.13         0.23         0.72 
TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.49         0.69         0.36         0.30         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 
       27.02        52.96         8.05        54.05         4.01        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5717 
       19.07        12.03         8.98        18.94         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5725 TCGA-CG-5727 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6525 
        1.02        15.02        31.04         3.58         9.80         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 
        6.61         4.14         1.68         3.65         4.70         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 
        4.27         0.62         7.79         0.20         3.02         1.02 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 11(4Q34.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.82         0.62         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.76         0.26         1.22         0.46         1.25         0.13 
TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-8060 TCGA-BR-8078 
        0.82         0.16         0.95         0.16         1.32         0.95 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8592 TCGA-BR-A4IU 
        0.46         0.72         0.26         0.43         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.92         0.39         0.79         0.79         0.53         0.43 
TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4301 TCGA-CG-4305 
        0.10         2.24         0.82         0.49         3.02        15.95 
TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4469 
        1.02        14.01        29.98        21.99         1.02         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 
       12.00         1.02         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 
        0.95        70.06        12.03        28.96        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6519 
       55.04        21.07         7.99         8.65         4.54        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 TCGA-F1-6177 
        9.63         8.19         6.90         0.69         4.04         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        2.01        72.23         0.39         3.58        59.05         5.03 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        0.56        26.43         6.87         3.55 

      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                        54.05                         72.23 
      DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE 
                         1.48                          1.07 
[1] "0.1 - 54.0 (1.5)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 11(4Q34.3) CNV" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 11(4Q34.3) CNV"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 11(4Q34.3) WILD-TYPE"       "DEL PEAK 11(4Q34.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 11(4Q34.3) WILD-TYPE" "DEL PEAK 11(4Q34.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 11(4Q34.3) CNV" 
[1] "hr=" "1.3"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(4Q34.3) CNV         29   44
  DEL PEAK 11(4Q34.3) WILD-TYPE   43   64
        clus
vv       DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  FEMALE                      29                            43
  MALE                        44                            64
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 11(4Q34.3) CNV                                           3
  DEL PEAK 11(4Q34.3) WILD-TYPE                                     7
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 11(4Q34.3) CNV                                                            7
  DEL PEAK 11(4Q34.3) WILD-TYPE                                                      9
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 11(4Q34.3) CNV                                                                       5
  DEL PEAK 11(4Q34.3) WILD-TYPE                                                                 3
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 11(4Q34.3) CNV                                                              2
  DEL PEAK 11(4Q34.3) WILD-TYPE                                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 11(4Q34.3) CNV                                              0
  DEL PEAK 11(4Q34.3) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 11(4Q34.3) CNV                                           4
  DEL PEAK 11(4Q34.3) WILD-TYPE                                    12
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 11(4Q34.3) CNV                                                           24
  DEL PEAK 11(4Q34.3) WILD-TYPE                                                     49
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 11(4Q34.3) CNV                                                       4
  DEL PEAK 11(4Q34.3) WILD-TYPE                                                 3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 11(4Q34.3) CNV                                                        2
  DEL PEAK 11(4Q34.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 11(4Q34.3) CNV                                                      8
  DEL PEAK 11(4Q34.3) WILD-TYPE                                                2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 11(4Q34.3) CNV                                                                           11
  DEL PEAK 11(4Q34.3) WILD-TYPE                                                                     17
D40V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 11(4Q34.3) CNV        0 22 23  6
  DEL PEAK 11(4Q34.3) WILD-TYPE  6 30 33 12
D40V5, multiclass
    clus
vv   DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  T1                       0                             6
  T2                      22                            30
  T3                      23                            33
  T4                       6                            12
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 11(4Q34.3) CNV       18 15 12  7
  DEL PEAK 11(4Q34.3) WILD-TYPE 26 34 11  8
D40V6, multiclass
    clus
vv   DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  N0                      18                            26
  N1                      15                            34
  N2                      12                            11
  N3                       7                             8
                               vv
clus                            M0 M1 MX
  DEL PEAK 11(4Q34.3) CNV       49  5  2
  DEL PEAK 11(4Q34.3) WILD-TYPE 69 11  6
D40V7, multiclass
    clus
vv   DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  M0                      49                            69
  M1                       5                            11
  MX                       2                             6
                               vv
clus                             I II III IV
  DEL PEAK 11(4Q34.3) CNV        8 21  12  9
  DEL PEAK 11(4Q34.3) WILD-TYPE 16 16  27 17
D40V8, multiclass
     clus
vv    DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  I                         8                            16
  II                       21                            16
  III                      12                            27
  IV                        9                            17
D40V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(4Q34.3) CNV          3   70
  DEL PEAK 11(4Q34.3) WILD-TYPE    2  105
     clus
vv    DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  NO                        3                             2
  YES                      70                           105
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 11(4Q34.3) CNV       53  4  3  6
  DEL PEAK 11(4Q34.3) WILD-TYPE 72  3  9 19
D40V10, multiclass
    clus
vv   DEL PEAK 11(4Q34.3) CNV DEL PEAK 11(4Q34.3) WILD-TYPE
  R0                      53                            72
  R1                       4                             3
  R2                       3                             9
  RX                       6                            19
D40V11, continuous

Clustering(41) Variable = Del Peak 12(5q11.2)
D41V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(5Q11.2) CNV       42  6
  DEL PEAK 12(5Q11.2) WILD-TYPE 82 13
      DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE 
                           48                            95 
      DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE 
                            6                            13 
$`DEL PEAK 12(5Q11.2) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7901 
        1.35         0.62         1.22         1.05         0.82         0.95 
TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 
        1.08         1.32         0.69         0.43         0.26         1.55 
TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        0.72         0.72         0.49         0.36         0.49         0.30 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 
       27.02        52.96         4.01        14.01        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5732 
       12.03        18.94         1.02         1.02        15.02        55.04 
TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        4.54         9.63         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        3.65         4.70         2.93         4.27         0.62         7.79 
TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7806 TCGA-IP-7968 
       72.23         0.20         1.02         0.56         6.87         2.53 

$`DEL PEAK 12(5Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8078 TCGA-BR-8080 
        0.99         0.69         0.16         0.82         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 
        0.46         0.72         0.26         1.18         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QL 
        0.53         0.43         0.13         0.23         0.10         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 
        0.82         0.69         0.07        20.02         3.02        15.95 
TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 
        1.02         8.05        54.05        29.98        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 
        8.65         3.58         9.80        15.65         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6818 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 
        0.69         4.04         6.54         2.01         0.39         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7808 
        3.58        59.05         5.03        26.43         3.55 

      DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE 
                         0.20                          0.07 
      DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE 
                        72.23                         70.06 
      DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE 
                        1.615                         1.120 
[1] "0.2 - 72.2 (1.6)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 12(5Q11.2) CNV"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 12(5Q11.2) WILD-TYPE"       "DEL PEAK 12(5Q11.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 12(5Q11.2) WILD-TYPE" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 12(5Q11.2) CNV" "DEL PEAK 12(5Q11.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 12(5Q11.2) CNV" 
[1] "hr=" "1.5"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(5Q11.2) CNV         21   35
  DEL PEAK 12(5Q11.2) WILD-TYPE   51   73
        clus
vv       DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE
  FEMALE                      21                            51
  MALE                        35                            73
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 12(5Q11.2) CNV                                           0
  DEL PEAK 12(5Q11.2) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 12(5Q11.2) CNV                                                            7
  DEL PEAK 12(5Q11.2) WILD-TYPE                                                      9
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 12(5Q11.2) CNV                                                                       4
  DEL PEAK 12(5Q11.2) WILD-TYPE                                                                 4
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 12(5Q11.2) CNV                                                              1
  DEL PEAK 12(5Q11.2) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 12(5Q11.2) CNV                                              0
  DEL PEAK 12(5Q11.2) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 12(5Q11.2) CNV                                           2
  DEL PEAK 12(5Q11.2) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 12(5Q11.2) CNV                                                           19
  DEL PEAK 12(5Q11.2) WILD-TYPE                                                     54
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 12(5Q11.2) CNV                                                       5
  DEL PEAK 12(5Q11.2) WILD-TYPE                                                 2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 12(5Q11.2) CNV                                                        2
  DEL PEAK 12(5Q11.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 12(5Q11.2) CNV                                                      7
  DEL PEAK 12(5Q11.2) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 12(5Q11.2) CNV                                                                            7
  DEL PEAK 12(5Q11.2) WILD-TYPE                                                                     21
D41V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 12(5Q11.2) CNV        1 21 17  2
  DEL PEAK 12(5Q11.2) WILD-TYPE  5 31 39 16
D41V5, multiclass
    clus
vv   DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE
  T1                       1                             5
  T2                      21                            31
  T3                      17                            39
  T4                       2                            16
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 12(5Q11.2) CNV       12 15  9  5
  DEL PEAK 12(5Q11.2) WILD-TYPE 32 34 14 10
D41V6, multiclass
    clus
vv   DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE
  N0                      12                            32
  N1                      15                            34
  N2                       9                            14
  N3                       5                            10
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(5Q11.2) CNV       41  2  1
  DEL PEAK 12(5Q11.2) WILD-TYPE 77 14  7
D41V7, multiclass
    clus
vv   DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE
  M0                      41                            77
  M1                       2                            14
  MX                       1                             7
                               vv
clus                             I II III IV
  DEL PEAK 12(5Q11.2) CNV        8 12  15  5
  DEL PEAK 12(5Q11.2) WILD-TYPE 16 25  24 21
D41V8, multiclass
     clus
vv    DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE
  I                         8                            16
  II                       12                            25
  III                      15                            24
  IV                        5                            21
D41V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(5Q11.2) CNV          2   54
  DEL PEAK 12(5Q11.2) WILD-TYPE    3  121
     clus
vv    DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE
  NO                        2                             3
  YES                      54                           121
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 12(5Q11.2) CNV       40  4  2  5
  DEL PEAK 12(5Q11.2) WILD-TYPE 85  3 10 20
D41V10, multiclass
    clus
vv   DEL PEAK 12(5Q11.2) CNV DEL PEAK 12(5Q11.2) WILD-TYPE
  R0                      40                            85
  R1                       4                             3
  R2                       2                            10
  RX                       5                            20
D41V11, continuous

Clustering(42) Variable = Del Peak 13(5q23.2)
D42V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 13(5Q23.2) CNV       37  5
  DEL PEAK 13(5Q23.2) WILD-TYPE 87 14
      DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE 
                           42                           101 
      DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE 
                            5                            14 
$`DEL PEAK 13(5Q23.2) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7901 
        1.35         0.62         1.48         1.05         0.82         0.95 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 
        0.16         1.08         1.32         0.43         0.26         1.55 
TCGA-BR-A4J1 TCGA-BR-A4QI TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4304 
        0.72         0.49         0.36         0.49         0.30        27.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       52.96        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5725 TCGA-D7-5579 
       19.07        18.94         1.02         1.02        15.02         4.54 
TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 
        9.63         6.61         4.14         3.65         4.70         4.27 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8631 TCGA-IN-7806 TCGA-IP-7968 
        7.79        72.23         0.20         0.56         6.87         2.53 

$`DEL PEAK 13(5Q23.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        0.99         0.69         0.82         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 
        0.46         0.72         0.26         1.18         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.53         0.43         0.13         0.23         0.10         0.72 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        2.24         0.82         0.69         0.07        20.02         3.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
       15.95         1.02         8.05        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 
        7.99         8.65         3.58         9.80        15.65         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 
        6.90         0.69         5.95         1.68         4.04         2.93 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        0.62         6.54         2.01         0.39         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7808 
        1.02        59.05         5.03        26.43         3.55 

      DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE 
                         0.16                          0.07 
      DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE 
                        72.23                         70.06 
      DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE 
                         2.04                          1.12 
[1] "0.2 - 72.2 (2.0)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 13(5Q23.2) CNV"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 13(5Q23.2) WILD-TYPE"       "DEL PEAK 13(5Q23.2) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 13(5Q23.2) WILD-TYPE" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 13(5Q23.2) CNV" "DEL PEAK 13(5Q23.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 13(5Q23.2) CNV" 
[1] "hr=" "2.1"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(5Q23.2) CNV         15   32
  DEL PEAK 13(5Q23.2) WILD-TYPE   57   76
        clus
vv       DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE
  FEMALE                      15                            57
  MALE                        32                            76
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 13(5Q23.2) CNV                                           0
  DEL PEAK 13(5Q23.2) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 13(5Q23.2) CNV                                                            6
  DEL PEAK 13(5Q23.2) WILD-TYPE                                                     10
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 13(5Q23.2) CNV                                                                       3
  DEL PEAK 13(5Q23.2) WILD-TYPE                                                                 5
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 13(5Q23.2) CNV                                                              1
  DEL PEAK 13(5Q23.2) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 13(5Q23.2) CNV                                              0
  DEL PEAK 13(5Q23.2) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 13(5Q23.2) CNV                                           1
  DEL PEAK 13(5Q23.2) WILD-TYPE                                    15
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 13(5Q23.2) CNV                                                           17
  DEL PEAK 13(5Q23.2) WILD-TYPE                                                     56
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 13(5Q23.2) CNV                                                       3
  DEL PEAK 13(5Q23.2) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 13(5Q23.2) CNV                                                        2
  DEL PEAK 13(5Q23.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 13(5Q23.2) CNV                                                      5
  DEL PEAK 13(5Q23.2) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 13(5Q23.2) CNV                                                                            8
  DEL PEAK 13(5Q23.2) WILD-TYPE                                                                     20
D42V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 13(5Q23.2) CNV        1 16 16  2
  DEL PEAK 13(5Q23.2) WILD-TYPE  5 36 40 16
D42V5, multiclass
    clus
vv   DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE
  T1                       1                             5
  T2                      16                            36
  T3                      16                            40
  T4                       2                            16
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 13(5Q23.2) CNV       14 12  8  2
  DEL PEAK 13(5Q23.2) WILD-TYPE 30 37 15 13
D42V6, multiclass
    clus
vv   DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE
  N0                      14                            30
  N1                      12                            37
  N2                       8                            15
  N3                       2                            13
                               vv
clus                            M0 M1 MX
  DEL PEAK 13(5Q23.2) CNV       35  1  1
  DEL PEAK 13(5Q23.2) WILD-TYPE 83 15  7
D42V7, multiclass
    clus
vv   DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE
  M0                      35                            83
  M1                       1                            15
  MX                       1                             7
                               vv
clus                             I II III IV
  DEL PEAK 13(5Q23.2) CNV        9 10  13  3
  DEL PEAK 13(5Q23.2) WILD-TYPE 15 27  26 23
D42V8, multiclass
     clus
vv    DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE
  I                         9                            15
  II                       10                            27
  III                      13                            26
  IV                        3                            23
D42V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(5Q23.2) CNV          1   46
  DEL PEAK 13(5Q23.2) WILD-TYPE    4  129
     clus
vv    DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE
  NO                        1                             4
  YES                      46                           129
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 13(5Q23.2) CNV       35  2  1  4
  DEL PEAK 13(5Q23.2) WILD-TYPE 90  5 11 21
D42V10, multiclass
    clus
vv   DEL PEAK 13(5Q23.2) CNV DEL PEAK 13(5Q23.2) WILD-TYPE
  R0                      35                            90
  R1                       2                             5
  R2                       1                            11
  RX                       4                            21
D42V11, continuous

Clustering(43) Variable = Del Peak 14(6p25.3)
D43V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 14(6P25.3) CNV       30  3
  DEL PEAK 14(6P25.3) WILD-TYPE 94 16
      DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE 
                           33                           110 
      DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE 
                            3                            16 
$`DEL PEAK 14(6P25.3) CNV`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7716 TCGA-BR-7901 
        5.62         1.35         1.22         0.66         0.82         0.95 
TCGA-BR-7959 TCGA-BR-8077 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF 
        1.08         0.69         0.39         0.72         0.23         0.72 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4437 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5719 
        0.36         0.30         8.05        18.94         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 
       12.03        31.04        65.10        55.04         3.58         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 
       15.65         9.63         8.19         5.95         1.68         3.65 
TCGA-D7-6822 TCGA-FP-8099 TCGA-HJ-7597 
        4.27         1.02        26.43 

$`DEL PEAK 14(6P25.3) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.62         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.25         0.13         1.05         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8078 
        0.99         0.69         0.16         0.82         1.32         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        1.18         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.92         0.79         0.79         0.53         0.43         0.13 
TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        0.10         0.49         2.24         0.82         0.69         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       52.96        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 
       12.00         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5730 
        5.98         0.95        70.06        15.02        28.96         4.01 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6522 TCGA-D7-6524 
       21.07         7.99         8.65         4.54         6.90         0.69 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 
        6.61         4.14         4.70         4.04         2.93         0.62 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        7.79         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-IN-7806 
        3.02         3.58        59.05         5.03         0.56         6.87 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

      DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE 
                         0.23                          0.07 
      DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE 
                        65.10                         72.23 
      DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE 
                         1.68                          1.20 
[1] "0.2 - 65.1 (1.7)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 14(6P25.3) CNV" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 14(6P25.3) CNV"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 14(6P25.3) WILD-TYPE"       "DEL PEAK 14(6P25.3) CNV" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" 
[1] "hr=" "2"  
D43V2, continuous
D43V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(6P25.3) CNV         19   22
  DEL PEAK 14(6P25.3) WILD-TYPE   53   86
        clus
vv       DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE
  FEMALE                      19                            53
  MALE                        22                            86
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 14(6P25.3) CNV                                           0
  DEL PEAK 14(6P25.3) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 14(6P25.3) CNV                                                            5
  DEL PEAK 14(6P25.3) WILD-TYPE                                                     11
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 14(6P25.3) CNV                                                                       1
  DEL PEAK 14(6P25.3) WILD-TYPE                                                                 7
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 14(6P25.3) CNV                                                              1
  DEL PEAK 14(6P25.3) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 14(6P25.3) CNV                                              1
  DEL PEAK 14(6P25.3) WILD-TYPE                                        0
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 14(6P25.3) CNV                                           7
  DEL PEAK 14(6P25.3) WILD-TYPE                                     9
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 14(6P25.3) CNV                                                           11
  DEL PEAK 14(6P25.3) WILD-TYPE                                                     62
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 14(6P25.3) CNV                                                       1
  DEL PEAK 14(6P25.3) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 14(6P25.3) CNV                                                        1
  DEL PEAK 14(6P25.3) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 14(6P25.3) CNV                                                      6
  DEL PEAK 14(6P25.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 14(6P25.3) CNV                                                                            7
  DEL PEAK 14(6P25.3) WILD-TYPE                                                                     21
D43V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 14(6P25.3) CNV        0 15 13  3
  DEL PEAK 14(6P25.3) WILD-TYPE  6 37 43 15
D43V5, multiclass
    clus
vv   DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE
  T1                       0                             6
  T2                      15                            37
  T3                      13                            43
  T4                       3                            15
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 14(6P25.3) CNV       11  7  6  4
  DEL PEAK 14(6P25.3) WILD-TYPE 33 42 17 11
D43V6, multiclass
    clus
vv   DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE
  N0                      11                            33
  N1                       7                            42
  N2                       6                            17
  N3                       4                            11
                               vv
clus                            M0 M1 MX
  DEL PEAK 14(6P25.3) CNV       28  2  3
  DEL PEAK 14(6P25.3) WILD-TYPE 90 14  5
D43V7, multiclass
    clus
vv   DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE
  M0                      28                            90
  M1                       2                            14
  MX                       3                             5
                               vv
clus                             I II III IV
  DEL PEAK 14(6P25.3) CNV        5  8   9  6
  DEL PEAK 14(6P25.3) WILD-TYPE 19 29  30 20
D43V8, multiclass
     clus
vv    DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE
  I                         5                            19
  II                        8                            29
  III                       9                            30
  IV                        6                            20
D43V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(6P25.3) CNV          1   40
  DEL PEAK 14(6P25.3) WILD-TYPE    4  135
     clus
vv    DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE
  NO                        1                             4
  YES                      40                           135
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 14(6P25.3) CNV       29  3  1  6
  DEL PEAK 14(6P25.3) WILD-TYPE 96  4 11 19
D43V10, multiclass
    clus
vv   DEL PEAK 14(6P25.3) CNV DEL PEAK 14(6P25.3) WILD-TYPE
  R0                      29                            96
  R1                       3                             4
  R2                       1                            11
  RX                       6                            19
D43V11, continuous

Clustering(44) Variable = Del Peak 15(6q26)
D44V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 15(6Q26) CNV       29  6
  DEL PEAK 15(6Q26) WILD-TYPE 95 13
      DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE 
                         35                         108 
      DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE 
                          6                          13 
$`DEL PEAK 15(6Q26) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        1.35         0.62         1.22         0.82         0.16         4.54 
TCGA-BR-7958 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-A4IY TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.16         0.69         0.49         0.39         0.23         0.72 
TCGA-CD-5800 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4437 TCGA-CG-4440 
        0.36         0.07         3.02        15.95         8.05         4.01 
TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5719 
       29.98        12.03         7.07        12.00         6.94         1.02 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6521 
       12.03        15.02        55.04         3.58        15.65         8.19 
TCGA-D7-6525 TCGA-D7-6526 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 
        5.95         6.61         1.02         0.56        26.43 

$`DEL PEAK 15(6Q26) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7851 
        0.46         1.25         0.13         1.05         0.69         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8078 
        0.95         0.69         1.08         0.82         1.32         0.95 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.79         0.72         0.79         0.53         0.43         0.13 
TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        0.10         0.49         2.24         0.82         0.69         0.49 
TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 
        0.30        20.02        27.02         1.02        52.96        54.05 
TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       14.01        47.05        19.07        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5720 
       18.94         1.02         1.02         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        5.98         0.95        70.06        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 
        4.01        21.07         7.99         8.65         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        9.63         6.90         0.69         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        4.70         4.04         2.93         4.27         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.58        59.05         5.03         6.87         3.55         2.53 

      DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE 
                       0.07                        0.10 
      DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE 
                      55.04                       72.23 
      DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE 
                       3.58                        1.15 
[1] "0.1 - 55.0 (3.6)" "0.1 - 72.2 (1.1)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4472                  TCGA-CG-4474 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
      "DEL PEAK 15(6Q26) CNV"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4472                  TCGA-CG-4474 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
      "DEL PEAK 15(6Q26) CNV"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4438                  TCGA-CG-4440 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4444                  TCGA-CG-4449 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4455                  TCGA-CG-4460 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-4472                  TCGA-CG-4474 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-D7-5579                  TCGA-D7-6518 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "DEL PEAK 15(6Q26) CNV" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6817                  TCGA-D7-6818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 15(6Q26) WILD-TYPE"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
      "DEL PEAK 15(6Q26) CNV"       "DEL PEAK 15(6Q26) CNV" 
                 TCGA-IN-7806                  TCGA-IN-7808 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" 
[1] "hr=" "1.4"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 15(6Q26) CNV         17   26
  DEL PEAK 15(6Q26) WILD-TYPE   55   82
        clus
vv       DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE
  FEMALE                    17                          55
  MALE                      26                          82
                             vv
clus                          STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 15(6Q26) CNV                                           0
  DEL PEAK 15(6Q26) WILD-TYPE                                    10
                             vv
clus                          STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 15(6Q26) CNV                                                            5
  DEL PEAK 15(6Q26) WILD-TYPE                                                     11
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 15(6Q26) CNV                                                                       2
  DEL PEAK 15(6Q26) WILD-TYPE                                                                 6
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 15(6Q26) CNV                                                              1
  DEL PEAK 15(6Q26) WILD-TYPE                                                        2
                             vv
clus                          STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 15(6Q26) CNV                                              1
  DEL PEAK 15(6Q26) WILD-TYPE                                        0
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 15(6Q26) CNV                                           5
  DEL PEAK 15(6Q26) WILD-TYPE                                    11
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 15(6Q26) CNV                                                           16
  DEL PEAK 15(6Q26) WILD-TYPE                                                     57
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 15(6Q26) CNV                                                       2
  DEL PEAK 15(6Q26) WILD-TYPE                                                 5
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 15(6Q26) CNV                                                        1
  DEL PEAK 15(6Q26) WILD-TYPE                                                  2
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 15(6Q26) CNV                                                      3
  DEL PEAK 15(6Q26) WILD-TYPE                                                7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 15(6Q26) CNV                                                                            6
  DEL PEAK 15(6Q26) WILD-TYPE                                                                     22
D44V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 15(6Q26) CNV        1 12 15  5
  DEL PEAK 15(6Q26) WILD-TYPE  5 40 41 13
D44V5, multiclass
    clus
vv   DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE
  T1                     1                           5
  T2                    12                          40
  T3                    15                          41
  T4                     5                          13
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK 15(6Q26) CNV        7 14  6  6
  DEL PEAK 15(6Q26) WILD-TYPE 37 35 17  9
D44V6, multiclass
    clus
vv   DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE
  N0                     7                          37
  N1                    14                          35
  N2                     6                          17
  N3                     6                           9
                             vv
clus                          M0 M1 MX
  DEL PEAK 15(6Q26) CNV       29  4  1
  DEL PEAK 15(6Q26) WILD-TYPE 89 12  7
D44V7, multiclass
    clus
vv   DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE
  M0                    29                          89
  M1                     4                          12
  MX                     1                           7
                             vv
clus                           I II III IV
  DEL PEAK 15(6Q26) CNV        3 10  10  9
  DEL PEAK 15(6Q26) WILD-TYPE 21 27  29 17
D44V8, multiclass
     clus
vv    DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE
  I                       3                          21
  II                     10                          27
  III                    10                          29
  IV                      9                          17
D44V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 15(6Q26) CNV          2   41
  DEL PEAK 15(6Q26) WILD-TYPE    3  134
     clus
vv    DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE
  NO                      2                           3
  YES                    41                         134
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK 15(6Q26) CNV       31  4  3  3
  DEL PEAK 15(6Q26) WILD-TYPE 94  3  9 22
D44V10, multiclass
    clus
vv   DEL PEAK 15(6Q26) CNV DEL PEAK 15(6Q26) WILD-TYPE
  R0                    31                          94
  R1                     4                           3
  R2                     3                           9
  RX                     3                          22
D44V11, continuous

Clustering(45) Variable = Del Peak 16(7q31.1)
D45V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 16(7Q31.1) CNV        16   1
  DEL PEAK 16(7Q31.1) WILD-TYPE 108  18
      DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE 
                           17                           126 
      DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE 
                            1                            18 
$`DEL PEAK 16(7Q31.1) CNV`
TCGA-BR-6564 TCGA-BR-6706 TCGA-BR-7723 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CG-4301 
        0.82         2.17         4.54         0.72         0.49         3.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4472 TCGA-D7-6815 
        8.05        54.05        19.07        12.03        12.00         3.65 
TCGA-D7-6820 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8631 TCGA-IP-7968 
        2.93        72.23         0.20         0.56         2.53 

$`DEL PEAK 16(7Q31.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 
        0.85         0.62         0.62         1.71         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.39         0.79         0.72         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 
        0.13         0.23         0.10         2.24         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 
        0.36         0.49         0.30         0.07        20.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       15.95         1.02        52.96         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       47.05        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 
        4.14         1.68         4.70         4.04         4.27         0.62 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        7.79         6.54         2.01         0.39         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        1.02        59.05         5.03        26.43         6.87         3.55 

      DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE 
                         0.20                          0.07 
      DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE 
                        72.23                         70.06 
      DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE 
                         3.02                          1.15 
[1] "0.2 - 72.2 (3.0)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 16(7Q31.1) CNV"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 16(7Q31.1) CNV"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 16(7Q31.1) CNV"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 16(7Q31.1) WILD-TYPE"       "DEL PEAK 16(7Q31.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 16(7Q31.1) CNV" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 16(7Q31.1) WILD-TYPE" "DEL PEAK 16(7Q31.1) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 16(7Q31.1) CNV" 
[1] "hr="     "2.4e+08"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(7Q31.1) CNV          5   16
  DEL PEAK 16(7Q31.1) WILD-TYPE   67   92
        clus
vv       DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE
  FEMALE                       5                            67
  MALE                        16                            92
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 16(7Q31.1) CNV                                           0
  DEL PEAK 16(7Q31.1) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 16(7Q31.1) CNV                                                            2
  DEL PEAK 16(7Q31.1) WILD-TYPE                                                     14
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 16(7Q31.1) CNV                                                                       1
  DEL PEAK 16(7Q31.1) WILD-TYPE                                                                 7
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 16(7Q31.1) CNV                                                              0
  DEL PEAK 16(7Q31.1) WILD-TYPE                                                        3
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 16(7Q31.1) CNV                                              0
  DEL PEAK 16(7Q31.1) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 16(7Q31.1) CNV                                           0
  DEL PEAK 16(7Q31.1) WILD-TYPE                                    16
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 16(7Q31.1) CNV                                                            9
  DEL PEAK 16(7Q31.1) WILD-TYPE                                                     64
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 16(7Q31.1) CNV                                                       3
  DEL PEAK 16(7Q31.1) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 16(7Q31.1) CNV                                                        0
  DEL PEAK 16(7Q31.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 16(7Q31.1) CNV                                                      2
  DEL PEAK 16(7Q31.1) WILD-TYPE                                                8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 16(7Q31.1) CNV                                                                            2
  DEL PEAK 16(7Q31.1) WILD-TYPE                                                                     26
D45V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 16(7Q31.1) CNV        0  6  8  3
  DEL PEAK 16(7Q31.1) WILD-TYPE  6 46 48 15
D45V5, multiclass
    clus
vv   DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE
  T1                       0                             6
  T2                       6                            46
  T3                       8                            48
  T4                       3                            15
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 16(7Q31.1) CNV        1 12  4  0
  DEL PEAK 16(7Q31.1) WILD-TYPE 43 37 19 15
D45V6, multiclass
    clus
vv   DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE
  N0                       1                            43
  N1                      12                            37
  N2                       4                            19
  N3                       0                            15
                               vv
clus                             M0  M1  MX
  DEL PEAK 16(7Q31.1) CNV        16   1   1
  DEL PEAK 16(7Q31.1) WILD-TYPE 102  15   7
D45V7, multiclass
    clus
vv   DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE
  M0                      16                           102
  M1                       1                            15
  MX                       1                             7
                               vv
clus                             I II III IV
  DEL PEAK 16(7Q31.1) CNV        1  6   7  3
  DEL PEAK 16(7Q31.1) WILD-TYPE 23 31  32 23
D45V8, multiclass
     clus
vv    DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE
  I                         1                            23
  II                        6                            31
  III                       7                            32
  IV                        3                            23
D45V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(7Q31.1) CNV          0   21
  DEL PEAK 16(7Q31.1) WILD-TYPE    5  154
     clus
vv    DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE
  NO                        0                             5
  YES                      21                           154
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 16(7Q31.1) CNV        16   1   1   2
  DEL PEAK 16(7Q31.1) WILD-TYPE 109   6  11  23
D45V10, multiclass
    clus
vv   DEL PEAK 16(7Q31.1) CNV DEL PEAK 16(7Q31.1) WILD-TYPE
  R0                      16                           109
  R1                       1                             6
  R2                       1                            11
  RX                       2                            23
D45V11, continuous

Clustering(46) Variable = Del Peak 17(7q36.3)
D46V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 17(7Q36.3) CNV       25  1
  DEL PEAK 17(7Q36.3) WILD-TYPE 99 18
      DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE 
                           26                           117 
      DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE 
                            1                            18 
$`DEL PEAK 17(7Q36.3) CNV`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8060 TCGA-BR-8077 
        1.35         0.82         4.54         0.95         1.32         0.69 
TCGA-BR-8296 TCGA-BR-A4PF TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 
        1.48         0.72         0.30         3.02         8.05        54.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4472 TCGA-CG-5724 TCGA-D7-6519 TCGA-D7-6525 
       19.07        12.03        12.00        12.03        15.65         5.95 
TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-FP-7829 
        6.61         3.65         4.70         4.04         2.93         0.20 
TCGA-FP-8631 TCGA-IN-7808 
        0.56         3.55 

$`DEL PEAK 17(7Q36.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.69         0.16         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.82         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8297 TCGA-BR-8592 
        0.43         0.26         1.18         1.55         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.59         0.92         0.39         0.79         0.72         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI 
        0.53         0.43         0.13         0.23         0.10         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 
        2.24         0.82         0.69         0.36         0.49         0.07 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 
       20.02        27.02        15.95         1.02        52.96         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       14.01        29.98        47.05        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94         7.07         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 
        9.63         8.19         6.90         0.69         4.14         1.68 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.27         0.62         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 
        0.39         3.02         3.58         1.02        59.05         5.03 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
       26.43         6.87         2.53 

      DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE 
                         0.20                          0.07 
      DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE 
                        54.05                         72.23 
      DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE 
                         3.60                          1.05 
[1] "0.2 - 54.0 (3.6)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 17(7Q36.3) CNV"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 17(7Q36.3) CNV"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 17(7Q36.3) CNV"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 17(7Q36.3) WILD-TYPE" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 17(7Q36.3) CNV" "DEL PEAK 17(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 17(7Q36.3) WILD-TYPE"       "DEL PEAK 17(7Q36.3) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 17(7Q36.3) WILD-TYPE" 
[1] "hr=" "3.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(7Q36.3) CNV         11   22
  DEL PEAK 17(7Q36.3) WILD-TYPE   61   86
        clus
vv       DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE
  FEMALE                      11                            61
  MALE                        22                            86
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 17(7Q36.3) CNV                                           0
  DEL PEAK 17(7Q36.3) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 17(7Q36.3) CNV                                                            2
  DEL PEAK 17(7Q36.3) WILD-TYPE                                                     14
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 17(7Q36.3) CNV                                                                       3
  DEL PEAK 17(7Q36.3) WILD-TYPE                                                                 5
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 17(7Q36.3) CNV                                                              0
  DEL PEAK 17(7Q36.3) WILD-TYPE                                                        3
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 17(7Q36.3) CNV                                              0
  DEL PEAK 17(7Q36.3) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 17(7Q36.3) CNV                                           5
  DEL PEAK 17(7Q36.3) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 17(7Q36.3) CNV                                                           12
  DEL PEAK 17(7Q36.3) WILD-TYPE                                                     61
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 17(7Q36.3) CNV                                                       3
  DEL PEAK 17(7Q36.3) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 17(7Q36.3) CNV                                                        0
  DEL PEAK 17(7Q36.3) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 17(7Q36.3) CNV                                                      4
  DEL PEAK 17(7Q36.3) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 17(7Q36.3) CNV                                                                            2
  DEL PEAK 17(7Q36.3) WILD-TYPE                                                                     26
D46V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 17(7Q36.3) CNV        0  9 14  3
  DEL PEAK 17(7Q36.3) WILD-TYPE  6 43 42 15
D46V5, multiclass
    clus
vv   DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE
  T1                       0                             6
  T2                       9                            43
  T3                      14                            42
  T4                       3                            15
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 17(7Q36.3) CNV        2 15  5  4
  DEL PEAK 17(7Q36.3) WILD-TYPE 42 34 18 11
D46V6, multiclass
    clus
vv   DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE
  N0                       2                            42
  N1                      15                            34
  N2                       5                            18
  N3                       4                            11
                               vv
clus                            M0 M1 MX
  DEL PEAK 17(7Q36.3) CNV       25  3  0
  DEL PEAK 17(7Q36.3) WILD-TYPE 93 13  8
D46V7, multiclass
    clus
vv   DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE
  M0                      25                            93
  M1                       3                            13
  MX                       0                             8
                               vv
clus                             I II III IV
  DEL PEAK 17(7Q36.3) CNV        0 10  11  5
  DEL PEAK 17(7Q36.3) WILD-TYPE 24 27  28 21
D46V8, multiclass
     clus
vv    DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE
  I                         0                            24
  II                       10                            27
  III                      11                            28
  IV                        5                            21
D46V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(7Q36.3) CNV          1   32
  DEL PEAK 17(7Q36.3) WILD-TYPE    4  143
     clus
vv    DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE
  NO                        1                             4
  YES                      32                           143
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 17(7Q36.3) CNV        25   1   2   3
  DEL PEAK 17(7Q36.3) WILD-TYPE 100   6  10  22
D46V10, multiclass
    clus
vv   DEL PEAK 17(7Q36.3) CNV DEL PEAK 17(7Q36.3) WILD-TYPE
  R0                      25                           100
  R1                       1                             6
  R2                       2                            10
  RX                       3                            22
D46V11, continuous

Clustering(47) Variable = Del Peak 18(8p23.2)
D47V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 18(8P23.2) CNV       38  5
  DEL PEAK 18(8P23.2) WILD-TYPE 86 14
      DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE 
                           43                           100 
      DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE 
                            5                            14 
$`DEL PEAK 18(8P23.2) CNV`
TCGA-BR-6457 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 
        1.35         0.62         1.71         1.22         1.48         1.05 
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7958 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8286 
        0.82         4.54         0.16         0.69         0.49         0.43 
TCGA-BR-8289 TCGA-BR-8296 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.26         1.48         0.39         0.72         0.23         0.72 
TCGA-BR-A4QI TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4438 
        0.49         0.36         0.30         3.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-5718 TCGA-CG-5724 
        4.01        29.98        47.05        19.07         1.02        12.03 
TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6521 
       15.02         4.01        55.04         3.58         9.80         8.19 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-FP-8099 
        6.61         1.68         2.93         0.62         6.54         1.02 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 18(8P23.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.82         0.62         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.66         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.13         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 
        1.08         0.82         1.32         0.95         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        0.26         1.18         1.55         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.92         0.79         0.79         0.53         0.43         0.13 
TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5803 
        0.10         2.24         0.82         0.69         0.49         0.07 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 
       20.02        27.02        15.95         1.02         8.05        14.01 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98         0.95        70.06        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6519 
       65.10        21.07         7.99         8.65         4.54        15.65 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 
        9.63         6.90         0.69         5.95         4.14         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6874 TCGA-F1-6875 
        4.70         4.04         4.27         7.79         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        0.39         0.20         3.02         3.58        59.05         5.03 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        0.56        26.43         6.87         3.55 

      DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE 
                         0.16                          0.07 
      DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE 
                        55.04                         72.23 
      DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE 
                         1.48                          1.15 
[1] "0.2 - 55.0 (1.5)" "0.1 - 72.2 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 18(8P23.2) CNV"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6817                    TCGA-D7-6818 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
      "DEL PEAK 18(8P23.2) CNV" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 18(8P23.2) WILD-TYPE"       "DEL PEAK 18(8P23.2) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
"DEL PEAK 18(8P23.2) WILD-TYPE" "DEL PEAK 18(8P23.2) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 18(8P23.2) CNV" 
[1] "hr=" "1.2"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) CNV         18   34
  DEL PEAK 18(8P23.2) WILD-TYPE   54   74
        clus
vv       DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE
  FEMALE                      18                            54
  MALE                        34                            74
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 18(8P23.2) CNV                                           0
  DEL PEAK 18(8P23.2) WILD-TYPE                                    10
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 18(8P23.2) CNV                                                            8
  DEL PEAK 18(8P23.2) WILD-TYPE                                                      8
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 18(8P23.2) CNV                                                                       3
  DEL PEAK 18(8P23.2) WILD-TYPE                                                                 5
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 18(8P23.2) CNV                                                              1
  DEL PEAK 18(8P23.2) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 18(8P23.2) CNV                                              0
  DEL PEAK 18(8P23.2) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 18(8P23.2) CNV                                           4
  DEL PEAK 18(8P23.2) WILD-TYPE                                    12
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 18(8P23.2) CNV                                                           19
  DEL PEAK 18(8P23.2) WILD-TYPE                                                     54
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 18(8P23.2) CNV                                                       2
  DEL PEAK 18(8P23.2) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 18(8P23.2) CNV                                                        1
  DEL PEAK 18(8P23.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 18(8P23.2) CNV                                                      5
  DEL PEAK 18(8P23.2) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 18(8P23.2) CNV                                                                            7
  DEL PEAK 18(8P23.2) WILD-TYPE                                                                     21
D47V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 18(8P23.2) CNV        2 13 18  5
  DEL PEAK 18(8P23.2) WILD-TYPE  4 39 38 13
D47V5, multiclass
    clus
vv   DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE
  T1                       2                             4
  T2                      13                            39
  T3                      18                            38
  T4                       5                            13
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 18(8P23.2) CNV       10 12  9  7
  DEL PEAK 18(8P23.2) WILD-TYPE 34 37 14  8
D47V6, multiclass
    clus
vv   DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE
  N0                      10                            34
  N1                      12                            37
  N2                       9                            14
  N3                       7                             8
                               vv
clus                            M0 M1 MX
  DEL PEAK 18(8P23.2) CNV       33  5  2
  DEL PEAK 18(8P23.2) WILD-TYPE 85 11  6
D47V7, multiclass
    clus
vv   DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE
  M0                      33                            85
  M1                       5                            11
  MX                       2                             6
                               vv
clus                             I II III IV
  DEL PEAK 18(8P23.2) CNV        5 13   9 10
  DEL PEAK 18(8P23.2) WILD-TYPE 19 24  30 16
D47V8, multiclass
     clus
vv    DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE
  I                         5                            19
  II                       13                            24
  III                       9                            30
  IV                       10                            16
D47V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(8P23.2) CNV          1   51
  DEL PEAK 18(8P23.2) WILD-TYPE    4  124
     clus
vv    DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE
  NO                        1                             4
  YES                      51                           124
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 18(8P23.2) CNV       37  4  5  3
  DEL PEAK 18(8P23.2) WILD-TYPE 88  3  7 22
D47V10, multiclass
    clus
vv   DEL PEAK 18(8P23.2) CNV DEL PEAK 18(8P23.2) WILD-TYPE
  R0                      37                            88
  R1                       4                             3
  R2                       5                             7
  RX                       3                            22
D47V11, continuous

Clustering(48) Variable = Del Peak 19(9p23)
D48V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 19(9P23) CNV       59  3
  DEL PEAK 19(9P23) WILD-TYPE 65 16
      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                         62                          81 
      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                          3                          16 
$`DEL PEAK 19(9P23) CNV`
TCGA-B7-5816 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6803 
        5.62         1.35         1.35         0.99         1.22         0.66 
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.48         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7901 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8284 TCGA-BR-8289 
        0.95         1.08         1.32         0.69         0.72         0.26 
TCGA-BR-8291 TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI 
        1.18         0.72         0.13         0.23         0.72         0.49 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 
        0.69         0.36         0.07         3.02         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 
        4.01        29.98        47.05        19.07        12.03        18.94 
TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5730 
       12.00         1.02         1.02        70.06        12.03         4.01 
TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
       55.04         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
        9.63         8.19         5.95         6.61         4.14         3.65 
TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 
        4.70         2.93         7.79         0.20         3.02         1.02 
TCGA-FP-8631 TCGA-IN-7806 
        0.56         6.87 

$`DEL PEAK 19(9P23) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
        0.10         0.95         1.41         0.85         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        0.62         1.71         2.17         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7851 
        0.26         1.22         0.46         1.25         0.13         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.69         0.16         0.82         0.95         0.49         0.46 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         0.43         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 
        0.43         0.10         2.24         0.82         0.49         0.30 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4441 
       20.02        27.02        15.95         1.02        52.96        14.01 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5725 
        1.02         6.94         0.99         5.98         0.95        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-6522 
       28.96        31.04        65.10        21.07         7.99         6.90 
TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        0.69         1.68         4.04         4.27         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        2.01        72.23         0.39         3.58        59.05         5.03 
TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
       26.43         3.55         2.53 

      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                       0.07                        0.10 
      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                      70.06                       72.23 
      DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE 
                      2.975                       1.020 
[1] "0.1 - 70.1 (3.0)" "0.1 - 72.2 (1.0)"
                 TCGA-B7-5816                  TCGA-B7-5818 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-7717                  TCGA-BR-7722 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4444                  TCGA-CG-4449 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4455                  TCGA-CG-4460 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-5579                  TCGA-D7-6518 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6817                  TCGA-D7-6818 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-7717                  TCGA-BR-7722 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4444                  TCGA-CG-4449 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4455                  TCGA-CG-4460 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-5579                  TCGA-D7-6518 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6817                  TCGA-D7-6818 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-7717                  TCGA-BR-7722 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-7723                  TCGA-BR-7851 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8077                  TCGA-BR-8078 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-8291                  TCGA-BR-8295 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-8592                  TCGA-BR-A4IU 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4IV                  TCGA-BR-A4IY 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4IZ                  TCGA-BR-A4J1 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4J2                  TCGA-BR-A4J4 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4J5                  TCGA-BR-A4J6 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4J8                  TCGA-BR-A4J9 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-BR-A4PF                  TCGA-BR-A4QI 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-BR-A4QL                  TCGA-CD-5798 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CD-5799                  TCGA-CD-5800 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CD-5801                  TCGA-CD-5802 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CD-5803                  TCGA-CG-4300 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4301                  TCGA-CG-4304 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4305                  TCGA-CG-4306 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4436                  TCGA-CG-4437 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4438                  TCGA-CG-4440 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4441                  TCGA-CG-4443 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4444                  TCGA-CG-4449 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-4455                  TCGA-CG-4460 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4462                  TCGA-CG-4465 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4466                  TCGA-CG-4469 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4472                  TCGA-CG-4474 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-4477                  TCGA-CG-5716 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5717                  TCGA-CG-5718 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5719                  TCGA-CG-5720 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5721                  TCGA-CG-5722 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5723                  TCGA-CG-5724 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5725                  TCGA-CG-5726 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5727                  TCGA-CG-5728 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-CG-5730                  TCGA-CG-5732 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-CG-5733                  TCGA-CG-5734 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-5577                  TCGA-D7-5578 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-5579                  TCGA-D7-6518 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6519                  TCGA-D7-6520 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6521                  TCGA-D7-6522 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-6524                  TCGA-D7-6525 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6526                  TCGA-D7-6527 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6528                  TCGA-D7-6815 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-D7-6817                  TCGA-D7-6818 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-D7-6820                  TCGA-D7-6822 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-EQ-5647                  TCGA-EQ-8122 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-F1-6177                  TCGA-F1-6874 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-F1-6875                  TCGA-FP-7735 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-FP-7829                  TCGA-FP-7916 
      "DEL PEAK 19(9P23) CNV"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-FP-7998                  TCGA-FP-8099 
"DEL PEAK 19(9P23) WILD-TYPE"       "DEL PEAK 19(9P23) CNV" 
                 TCGA-FP-8209                  TCGA-FP-8210 
"DEL PEAK 19(9P23) WILD-TYPE" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-FP-8631                  TCGA-HJ-7597 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-IN-7806                  TCGA-IN-7808 
      "DEL PEAK 19(9P23) CNV" "DEL PEAK 19(9P23) WILD-TYPE" 
                 TCGA-IP-7968 
"DEL PEAK 19(9P23) WILD-TYPE" 
[1] "hr=" "3.9"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 19(9P23) CNV         31   45
  DEL PEAK 19(9P23) WILD-TYPE   41   63
        clus
vv       DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  FEMALE                    31                          41
  MALE                      45                          63
                             vv
clus                          STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 19(9P23) CNV                                           2
  DEL PEAK 19(9P23) WILD-TYPE                                     8
                             vv
clus                          STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 19(9P23) CNV                                                            7
  DEL PEAK 19(9P23) WILD-TYPE                                                      9
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 19(9P23) CNV                                                                       5
  DEL PEAK 19(9P23) WILD-TYPE                                                                 3
                             vv
clus                          STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 19(9P23) CNV                                                              1
  DEL PEAK 19(9P23) WILD-TYPE                                                        2
                             vv
clus                          STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 19(9P23) CNV                                              0
  DEL PEAK 19(9P23) WILD-TYPE                                        1
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 19(9P23) CNV                                           9
  DEL PEAK 19(9P23) WILD-TYPE                                     7
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 19(9P23) CNV                                                           26
  DEL PEAK 19(9P23) WILD-TYPE                                                     47
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 19(9P23) CNV                                                       5
  DEL PEAK 19(9P23) WILD-TYPE                                                 2
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 19(9P23) CNV                                                        2
  DEL PEAK 19(9P23) WILD-TYPE                                                  1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 19(9P23) CNV                                                      7
  DEL PEAK 19(9P23) WILD-TYPE                                                3
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 19(9P23) CNV                                                                           10
  DEL PEAK 19(9P23) WILD-TYPE                                                                     18
D48V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 19(9P23) CNV        1 23 24  8
  DEL PEAK 19(9P23) WILD-TYPE  5 29 32 10
D48V5, multiclass
    clus
vv   DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  T1                     1                           5
  T2                    23                          29
  T3                    24                          32
  T4                     8                          10
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK 19(9P23) CNV       13 25 11  8
  DEL PEAK 19(9P23) WILD-TYPE 31 24 12  7
D48V6, multiclass
    clus
vv   DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  N0                    13                          31
  N1                    25                          24
  N2                    11                          12
  N3                     8                           7
                             vv
clus                          M0 M1 MX
  DEL PEAK 19(9P23) CNV       55  5  1
  DEL PEAK 19(9P23) WILD-TYPE 63 11  7
D48V7, multiclass
    clus
vv   DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  M0                    55                          63
  M1                     5                          11
  MX                     1                           7
                             vv
clus                           I II III IV
  DEL PEAK 19(9P23) CNV        3 20  20 12
  DEL PEAK 19(9P23) WILD-TYPE 21 17  19 14
D48V8, multiclass
     clus
vv    DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  I                       3                          21
  II                     20                          17
  III                    20                          19
  IV                     12                          14
D48V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 19(9P23) CNV          3   73
  DEL PEAK 19(9P23) WILD-TYPE    2  102
     clus
vv    DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  NO                      3                           2
  YES                    73                         102
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK 19(9P23) CNV       54  4  4  9
  DEL PEAK 19(9P23) WILD-TYPE 71  3  8 16
D48V10, multiclass
    clus
vv   DEL PEAK 19(9P23) CNV DEL PEAK 19(9P23) WILD-TYPE
  R0                    54                          71
  R1                     4                           3
  R2                     4                           8
  RX                     9                          16
D48V11, continuous

Clustering(49) Variable = Del Peak 20(9p21.3)
D49V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 20(9P21.3) CNV       54  7
  DEL PEAK 20(9P21.3) WILD-TYPE 70 12
      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                           61                            82 
      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                            7                            12 
$`DEL PEAK 20(9P21.3) CNV`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7715 
        1.35         1.35         1.22         0.66         1.48         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7959 
        0.82         0.69         0.16         4.54         0.95         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8291 TCGA-BR-A4J1 TCGA-BR-A4J6 
        0.82         1.32         0.69         1.18         0.72         0.13 
TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.23         0.72         0.49         0.82         0.69         0.36 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        0.07         3.02        27.02        54.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4472 
       29.98        47.05        19.07        12.03        18.94        12.00 
TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5724 TCGA-CG-5725 
        1.02         1.02         1.02         0.99        12.03        15.02 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 
        4.01        55.04         3.58         4.54        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 
        8.19         5.95         6.61         4.14         3.65         4.70 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7806 
        2.93         7.79        72.23         1.02         0.56         6.87 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 20(9P21.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.62         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        1.12         0.76         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8078 TCGA-BR-8080 
        0.13         0.99         0.69         0.16         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 
        0.46         0.72         0.26         0.43         0.26         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J9 TCGA-BR-A4QL 
        0.79         0.79         0.53         0.43         0.10         2.24 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.49         0.30        20.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 
        8.05        21.99         1.02         8.98         7.07         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         6.94         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 
       31.04        65.10        21.07         7.99         8.65         9.80 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 
        6.90         0.69         1.68         4.04         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        6.54         2.01         0.39         0.20         3.02         3.58 
TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7808 
       59.05         5.03        26.43         3.55 

      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                        72.23                         70.06 
      DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE 
                         2.53                          1.02 
[1] "0.1 - 72.2 (2.5)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-7723                    TCGA-BR-7851 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-8077                    TCGA-BR-8078 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CD-5803                    TCGA-CG-4300 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6521                    TCGA-D7-6522 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 20(9P21.3) CNV"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 20(9P21.3) WILD-TYPE"       "DEL PEAK 20(9P21.3) CNV" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 20(9P21.3) WILD-TYPE" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 20(9P21.3) CNV" "DEL PEAK 20(9P21.3) WILD-TYPE" 
                   TCGA-IP-7968 
      "DEL PEAK 20(9P21.3) CNV" 
[1] "hr=" "1.8"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) CNV         28   43
  DEL PEAK 20(9P21.3) WILD-TYPE   44   65
        clus
vv       DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  FEMALE                      28                            44
  MALE                        43                            65
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 20(9P21.3) CNV                                           1
  DEL PEAK 20(9P21.3) WILD-TYPE                                     9
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 20(9P21.3) CNV                                                            7
  DEL PEAK 20(9P21.3) WILD-TYPE                                                      9
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 20(9P21.3) CNV                                                                       4
  DEL PEAK 20(9P21.3) WILD-TYPE                                                                 4
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 20(9P21.3) CNV                                                              1
  DEL PEAK 20(9P21.3) WILD-TYPE                                                        2
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 20(9P21.3) CNV                                              0
  DEL PEAK 20(9P21.3) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 20(9P21.3) CNV                                           7
  DEL PEAK 20(9P21.3) WILD-TYPE                                     9
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 20(9P21.3) CNV                                                           25
  DEL PEAK 20(9P21.3) WILD-TYPE                                                     48
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 20(9P21.3) CNV                                                       5
  DEL PEAK 20(9P21.3) WILD-TYPE                                                 2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 20(9P21.3) CNV                                                        2
  DEL PEAK 20(9P21.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 20(9P21.3) CNV                                                      6
  DEL PEAK 20(9P21.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 20(9P21.3) CNV                                                                           11
  DEL PEAK 20(9P21.3) WILD-TYPE                                                                     17
D49V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 20(9P21.3) CNV        1 24 22  7
  DEL PEAK 20(9P21.3) WILD-TYPE  5 28 34 11
D49V5, multiclass
    clus
vv   DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  T1                       1                             5
  T2                      24                            28
  T3                      22                            34
  T4                       7                            11
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 20(9P21.3) CNV       17 20 13  6
  DEL PEAK 20(9P21.3) WILD-TYPE 27 29 10  9
D49V6, multiclass
    clus
vv   DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  N0                      17                            27
  N1                      20                            29
  N2                      13                            10
  N3                       6                             9
                               vv
clus                            M0 M1 MX
  DEL PEAK 20(9P21.3) CNV       51  5  2
  DEL PEAK 20(9P21.3) WILD-TYPE 67 11  6
D49V7, multiclass
    clus
vv   DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  M0                      51                            67
  M1                       5                            11
  MX                       2                             6
                               vv
clus                             I II III IV
  DEL PEAK 20(9P21.3) CNV        8 18  17 11
  DEL PEAK 20(9P21.3) WILD-TYPE 16 19  22 15
D49V8, multiclass
     clus
vv    DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  I                         8                            16
  II                       18                            19
  III                      17                            22
  IV                       11                            15
D49V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 20(9P21.3) CNV          3   68
  DEL PEAK 20(9P21.3) WILD-TYPE    2  107
     clus
vv    DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  NO                        3                             2
  YES                      68                           107
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 20(9P21.3) CNV       52  3  4  6
  DEL PEAK 20(9P21.3) WILD-TYPE 73  4  8 19
D49V10, multiclass
    clus
vv   DEL PEAK 20(9P21.3) CNV DEL PEAK 20(9P21.3) WILD-TYPE
  R0                      52                            73
  R1                       3                             4
  R2                       4                             8
  RX                       6                            19
D49V11, continuous

Clustering(50) Variable = Del Peak 21(9q21.11)
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(9Q21.11) CNV       28  3
  DEL PEAK 21(9Q21.11) WILD-TYPE 96 16
      DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE 
                            31                            112 
      DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE 
                             3                             16 
$`DEL PEAK 21(9Q21.11) CNV`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6803 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 
        1.35         1.35         0.66         1.05         0.82         4.54 
TCGA-BR-7901 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.95         0.43         1.18         0.72         0.23         0.72 
TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 
        0.49         0.69         0.36         0.30         0.07        27.02 
TCGA-CG-4438 TCGA-CG-4455 TCGA-CG-5724 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
       54.05        12.03        12.03        15.65         9.63         8.19 
TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-8099 
        5.95         4.14         3.65         7.79        72.23         1.02 
TCGA-FP-8631 
        0.56 

$`DEL PEAK 21(9Q21.11) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        0.66         1.12         0.76         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 
        0.46         1.25         0.13         0.69         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8289 
        0.95         0.49         0.46         0.72         0.26         0.26 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        1.55         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.39         0.79         0.79         0.53         0.43         0.13 
TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 
        0.10         2.24         0.82         0.49        20.02         3.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02        52.96         8.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        47.05        19.07        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 
        9.80         6.90         0.69         6.61         1.68         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        0.39         0.20         3.02         3.58        59.05         5.03 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

      DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE 
                         72.23                          70.06 
      DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE 
                         1.180                          1.285 
[1] "0.1 - 72.2 (1.2)" "0.1 - 70.1 (1.3)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 21(9Q21.11) CNV"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 21(9Q21.11) WILD-TYPE"       "DEL PEAK 21(9Q21.11) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 21(9Q21.11) CNV" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 21(9Q21.11) WILD-TYPE" "DEL PEAK 21(9Q21.11) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 21(9Q21.11) WILD-TYPE" 
[1] "hr=" "2.3"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(9Q21.11) CNV         15   25
  DEL PEAK 21(9Q21.11) WILD-TYPE   57   83
        clus
vv       DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE
  FEMALE                       15                             57
  MALE                         25                             83
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 21(9Q21.11) CNV                                           1
  DEL PEAK 21(9Q21.11) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 21(9Q21.11) CNV                                                            6
  DEL PEAK 21(9Q21.11) WILD-TYPE                                                     10
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 21(9Q21.11) CNV                                                                       2
  DEL PEAK 21(9Q21.11) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 21(9Q21.11) CNV                                                              0
  DEL PEAK 21(9Q21.11) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 21(9Q21.11) CNV                                              0
  DEL PEAK 21(9Q21.11) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 21(9Q21.11) CNV                                           6
  DEL PEAK 21(9Q21.11) WILD-TYPE                                    10
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 21(9Q21.11) CNV                                                           17
  DEL PEAK 21(9Q21.11) WILD-TYPE                                                     56
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 21(9Q21.11) CNV                                                       2
  DEL PEAK 21(9Q21.11) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 21(9Q21.11) CNV                                                        2
  DEL PEAK 21(9Q21.11) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 21(9Q21.11) CNV                                                      2
  DEL PEAK 21(9Q21.11) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 21(9Q21.11) CNV                                                                            2
  DEL PEAK 21(9Q21.11) WILD-TYPE                                                                     26
D50V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 21(9Q21.11) CNV        0 11 14  3
  DEL PEAK 21(9Q21.11) WILD-TYPE  6 41 42 15
D50V5, multiclass
    clus
vv   DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE
  T1                        0                              6
  T2                       11                             41
  T3                       14                             42
  T4                        3                             15
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 21(9Q21.11) CNV        9 11  6  3
  DEL PEAK 21(9Q21.11) WILD-TYPE 35 38 17 12
D50V6, multiclass
    clus
vv   DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE
  N0                        9                             35
  N1                       11                             38
  N2                        6                             17
  N3                        3                             12
                                vv
clus                             M0 M1 MX
  DEL PEAK 21(9Q21.11) CNV       30  1  0
  DEL PEAK 21(9Q21.11) WILD-TYPE 88 15  8
D50V7, multiclass
    clus
vv   DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE
  M0                       30                             88
  M1                        1                             15
  MX                        0                              8
                                vv
clus                              I II III IV
  DEL PEAK 21(9Q21.11) CNV        2 13   9  4
  DEL PEAK 21(9Q21.11) WILD-TYPE 22 24  30 22
D50V8, multiclass
     clus
vv    DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE
  I                          2                             22
  II                        13                             24
  III                        9                             30
  IV                         4                             22
D50V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(9Q21.11) CNV          2   38
  DEL PEAK 21(9Q21.11) WILD-TYPE    3  137
     clus
vv    DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE
  NO                         2                              3
  YES                       38                            137
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 21(9Q21.11) CNV       28  1  1  5
  DEL PEAK 21(9Q21.11) WILD-TYPE 97  6 11 20
D50V10, multiclass
    clus
vv   DEL PEAK 21(9Q21.11) CNV DEL PEAK 21(9Q21.11) WILD-TYPE
  R0                       28                             97
  R1                        1                              6
  R2                        1                             11
  RX                        5                             20
D50V11, continuous

Clustering(51) Variable = Del Peak 22(10p15.1)
D51V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 22(10P15.1) CNV        16   0
  DEL PEAK 22(10P15.1) WILD-TYPE 108  19
      DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE 
                            16                            127 
      DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE 
                             0                             19 
$`DEL PEAK 22(10P15.1) CNV`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7901 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8291 
        1.35         0.82         0.95         0.82         1.32         1.18 
TCGA-BR-A4IY TCGA-CG-4301 TCGA-CG-4455 TCGA-CG-5732 TCGA-D7-6521 TCGA-D7-6528 
        0.39         3.02        12.03        55.04         8.19         1.68 
TCGA-D7-6815 TCGA-D7-6820 TCGA-FP-7829 TCGA-FP-8631 
        3.65         2.93         0.20         0.56 

$`DEL PEAK 22(10P15.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         4.54         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.08         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.26         0.43         0.26         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 
        0.20         0.59         0.92         0.79         0.72         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.53         0.43         0.13         0.23         0.10         0.72 
TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        0.49         2.24         0.82         0.69         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.30         0.07        20.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
       15.65         9.63         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        4.14         4.70         4.04         4.27         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        6.54         2.01        72.23         0.39         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        1.02        59.05         5.03        26.43         6.87         3.55 
TCGA-IP-7968 
        2.53 

      DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE 
                          0.20                           0.07 
      DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE 
                         55.04                          72.23 
      DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE 
                         1.335                          1.220 
[1] "0.2 - 55.0 (1.3)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "DEL PEAK 22(10P15.1) CNV"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 22(10P15.1) CNV"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "DEL PEAK 22(10P15.1) CNV"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 22(10P15.1) CNV"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
      "DEL PEAK 22(10P15.1) CNV"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 22(10P15.1) WILD-TYPE"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 22(10P15.1) CNV"       "DEL PEAK 22(10P15.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 22(10P15.1) CNV" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 22(10P15.1) WILD-TYPE" "DEL PEAK 22(10P15.1) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 22(10P15.1) WILD-TYPE" 
[1] "hr="     "7.6e+07"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(10P15.1) CNV         10   14
  DEL PEAK 22(10P15.1) WILD-TYPE   62   94
        clus
vv       DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE
  FEMALE                       10                             62
  MALE                         14                             94
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 22(10P15.1) CNV                                           1
  DEL PEAK 22(10P15.1) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 22(10P15.1) CNV                                                            2
  DEL PEAK 22(10P15.1) WILD-TYPE                                                     14
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 22(10P15.1) CNV                                                                       2
  DEL PEAK 22(10P15.1) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 22(10P15.1) CNV                                                              0
  DEL PEAK 22(10P15.1) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 22(10P15.1) CNV                                              0
  DEL PEAK 22(10P15.1) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 22(10P15.1) CNV                                           1
  DEL PEAK 22(10P15.1) WILD-TYPE                                    15
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 22(10P15.1) CNV                                                           10
  DEL PEAK 22(10P15.1) WILD-TYPE                                                     63
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 22(10P15.1) CNV                                                       3
  DEL PEAK 22(10P15.1) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 22(10P15.1) CNV                                                        0
  DEL PEAK 22(10P15.1) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 22(10P15.1) CNV                                                      3
  DEL PEAK 22(10P15.1) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 22(10P15.1) CNV                                                                            1
  DEL PEAK 22(10P15.1) WILD-TYPE                                                                     27
D51V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 22(10P15.1) CNV        0  8  6  1
  DEL PEAK 22(10P15.1) WILD-TYPE  6 44 50 17
D51V5, multiclass
    clus
vv   DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE
  T1                        0                              6
  T2                        8                             44
  T3                        6                             50
  T4                        1                             17
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 22(10P15.1) CNV        2 10  2  2
  DEL PEAK 22(10P15.1) WILD-TYPE 42 39 21 13
D51V6, multiclass
    clus
vv   DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE
  N0                        2                             42
  N1                       10                             39
  N2                        2                             21
  N3                        2                             13
                                vv
clus                              M0  M1  MX
  DEL PEAK 22(10P15.1) CNV        18   1   0
  DEL PEAK 22(10P15.1) WILD-TYPE 100  15   8
D51V7, multiclass
    clus
vv   DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE
  M0                       18                            100
  M1                        1                             15
  MX                        0                              8
                                vv
clus                              I II III IV
  DEL PEAK 22(10P15.1) CNV        2  4   6  3
  DEL PEAK 22(10P15.1) WILD-TYPE 22 33  33 23
D51V8, multiclass
     clus
vv    DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE
  I                          2                             22
  II                         4                             33
  III                        6                             33
  IV                         3                             23
D51V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(10P15.1) CNV          1   23
  DEL PEAK 22(10P15.1) WILD-TYPE    4  152
     clus
vv    DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE
  NO                         1                              4
  YES                       23                            152
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 22(10P15.1) CNV        16   1   1   6
  DEL PEAK 22(10P15.1) WILD-TYPE 109   6  11  19
D51V10, multiclass
    clus
vv   DEL PEAK 22(10P15.1) CNV DEL PEAK 22(10P15.1) WILD-TYPE
  R0                       16                            109
  R1                        1                              6
  R2                        1                             11
  RX                        6                             19
D51V11, continuous

Clustering(52) Variable = Del Peak 23(10q22.3)
D52V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 23(10Q22.3) CNV        21   2
  DEL PEAK 23(10Q22.3) WILD-TYPE 103  17
      DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE 
                            23                            120 
      DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE 
                             2                             17 
$`DEL PEAK 23(10Q22.3) CNV`
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8060 TCGA-BR-8291 TCGA-BR-A4QI 
        0.82         4.54         0.95         1.32         1.18         0.49 
TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 
        0.69         0.30        52.96         4.01        14.01        12.03 
TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5730 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6527 
       18.94         1.02         4.01         9.80         8.19         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-EQ-8122 TCGA-FP-7829 
        1.68         3.65         4.70         7.79         0.20 

$`DEL PEAK 23(10Q22.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        1.05         0.69         0.16         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        1.08         0.82         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8296 
        0.72         0.26         0.43         0.26         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        0.76         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 
        0.72         0.79         0.53         0.43         0.13         0.23 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        0.10         0.72         2.24         0.82         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 
        8.05        54.05        29.98        47.05        19.07        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
       15.65         9.63         6.90         0.69         5.95         6.61 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
       72.23         0.39         3.02         3.58         1.02        59.05 
TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        5.03         0.56        26.43         6.87         3.55         2.53 

      DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE 
                          0.20                           0.07 
      DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE 
                         52.96                          72.23 
      DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE 
                          4.01                           1.10 
[1] "0.2 - 53.0 (4.0)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 23(10Q22.3) CNV"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 23(10Q22.3) CNV"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 23(10Q22.3) CNV"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 23(10Q22.3) WILD-TYPE"       "DEL PEAK 23(10Q22.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 23(10Q22.3) CNV" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 23(10Q22.3) WILD-TYPE" "DEL PEAK 23(10Q22.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 23(10Q22.3) WILD-TYPE" 
[1] "hr=" "1.4"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(10Q22.3) CNV         11   17
  DEL PEAK 23(10Q22.3) WILD-TYPE   61   91
        clus
vv       DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE
  FEMALE                       11                             61
  MALE                         17                             91
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 23(10Q22.3) CNV                                           1
  DEL PEAK 23(10Q22.3) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 23(10Q22.3) CNV                                                            2
  DEL PEAK 23(10Q22.3) WILD-TYPE                                                     14
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 23(10Q22.3) CNV                                                                       1
  DEL PEAK 23(10Q22.3) WILD-TYPE                                                                 7
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 23(10Q22.3) CNV                                                              0
  DEL PEAK 23(10Q22.3) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 23(10Q22.3) CNV                                              0
  DEL PEAK 23(10Q22.3) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 23(10Q22.3) CNV                                           2
  DEL PEAK 23(10Q22.3) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 23(10Q22.3) CNV                                                            8
  DEL PEAK 23(10Q22.3) WILD-TYPE                                                     65
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 23(10Q22.3) CNV                                                       2
  DEL PEAK 23(10Q22.3) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 23(10Q22.3) CNV                                                        1
  DEL PEAK 23(10Q22.3) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 23(10Q22.3) CNV                                                      3
  DEL PEAK 23(10Q22.3) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 23(10Q22.3) CNV                                                                            7
  DEL PEAK 23(10Q22.3) WILD-TYPE                                                                     21
D52V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 23(10Q22.3) CNV        0 13  6  1
  DEL PEAK 23(10Q22.3) WILD-TYPE  6 39 50 17
D52V5, multiclass
    clus
vv   DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE
  T1                        0                              6
  T2                       13                             39
  T3                        6                             50
  T4                        1                             17
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 23(10Q22.3) CNV        4 10  4  3
  DEL PEAK 23(10Q22.3) WILD-TYPE 40 39 19 12
D52V6, multiclass
    clus
vv   DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE
  N0                        4                             40
  N1                       10                             39
  N2                        4                             19
  N3                        3                             12
                                vv
clus                             M0 M1 MX
  DEL PEAK 23(10Q22.3) CNV       22  2  0
  DEL PEAK 23(10Q22.3) WILD-TYPE 96 14  8
D52V7, multiclass
    clus
vv   DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE
  M0                       22                             96
  M1                        2                             14
  MX                        0                              8
                                vv
clus                              I II III IV
  DEL PEAK 23(10Q22.3) CNV        3  7   6  4
  DEL PEAK 23(10Q22.3) WILD-TYPE 21 30  33 22
D52V8, multiclass
     clus
vv    DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE
  I                          3                             21
  II                         7                             30
  III                        6                             33
  IV                         4                             22
D52V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(10Q22.3) CNV          1   27
  DEL PEAK 23(10Q22.3) WILD-TYPE    4  148
     clus
vv    DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE
  NO                         1                              4
  YES                       27                            148
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 23(10Q22.3) CNV        18   1   2   4
  DEL PEAK 23(10Q22.3) WILD-TYPE 107   6  10  21
D52V10, multiclass
    clus
vv   DEL PEAK 23(10Q22.3) CNV DEL PEAK 23(10Q22.3) WILD-TYPE
  R0                       18                            107
  R1                        1                              6
  R2                        2                             10
  RX                        4                             21
D52V11, continuous

Clustering(53) Variable = Del Peak 24(10q23.31)
D53V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 24(10Q23.31) CNV       32  4
  DEL PEAK 24(10Q23.31) WILD-TYPE 92 15
      DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE 
                             36                             107 
      DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE 
                              4                              15 
$`DEL PEAK 24(10Q23.31) CNV`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-7704 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        0.10         1.41         1.25         0.82         4.54         0.95 
TCGA-BR-8060 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5802 
        1.32         1.18         1.55         0.49         0.69         0.30 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       27.02        52.96         4.01        14.01        29.98        47.05 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5730 
       12.03        21.99        18.94         1.02        15.02         4.01 
TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6528 
       55.04         8.65         9.80         8.19         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-EQ-8122 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8631 
        3.65         4.70         7.79         0.39         0.20         0.56 

$`DEL PEAK 24(10Q23.31) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.35         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 
        1.48         0.46         0.13         1.05         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 
        0.99         0.69         0.16         1.08         0.82         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV 
        0.26         1.48         0.76         0.20         0.59         0.92 
TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.39         0.79         0.72         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5798 
        0.13         0.23         0.10         0.72         2.24         0.82 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 
        0.36         0.49         0.07        20.02         3.02        15.95 
TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4462 TCGA-CG-4465 
        1.02         8.05        54.05        19.07         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 
       28.96        31.04        65.10        21.07         7.99         3.58 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        4.54        15.65         9.63         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        6.61         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        2.01        72.23         3.02         3.58         1.02        59.05 
TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        5.03        26.43         6.87         3.55         2.53 

      DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE 
                           0.10                            0.07 
      DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE 
                          55.04                           72.23 
      DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE 
                           4.01                            1.02 
[1] "0.1 - 55.0 (4.0)" "0.1 - 72.2 (1.0)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 24(10Q23.31) CNV"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 24(10Q23.31) WILD-TYPE"       "DEL PEAK 24(10Q23.31) CNV" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 24(10Q23.31) CNV" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 24(10Q23.31) WILD-TYPE" "DEL PEAK 24(10Q23.31) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 24(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.9"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(10Q23.31) CNV         16   26
  DEL PEAK 24(10Q23.31) WILD-TYPE   56   82
        clus
vv       DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE
  FEMALE                        16                              56
  MALE                          26                              82
                                 vv
clus                              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 24(10Q23.31) CNV                                           1
  DEL PEAK 24(10Q23.31) WILD-TYPE                                     9
                                 vv
clus                              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 24(10Q23.31) CNV                                                            3
  DEL PEAK 24(10Q23.31) WILD-TYPE                                                     13
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 24(10Q23.31) CNV                                                                       2
  DEL PEAK 24(10Q23.31) WILD-TYPE                                                                 6
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 24(10Q23.31) CNV                                                              0
  DEL PEAK 24(10Q23.31) WILD-TYPE                                                        3
                                 vv
clus                              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 24(10Q23.31) CNV                                              0
  DEL PEAK 24(10Q23.31) WILD-TYPE                                        1
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 24(10Q23.31) CNV                                           3
  DEL PEAK 24(10Q23.31) WILD-TYPE                                    13
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 24(10Q23.31) CNV                                                           14
  DEL PEAK 24(10Q23.31) WILD-TYPE                                                     59
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 24(10Q23.31) CNV                                                       2
  DEL PEAK 24(10Q23.31) WILD-TYPE                                                 5
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 24(10Q23.31) CNV                                                        1
  DEL PEAK 24(10Q23.31) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 24(10Q23.31) CNV                                                      4
  DEL PEAK 24(10Q23.31) WILD-TYPE                                                6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 24(10Q23.31) CNV                                                                           11
  DEL PEAK 24(10Q23.31) WILD-TYPE                                                                     17
D53V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 24(10Q23.31) CNV        1 20  8  2
  DEL PEAK 24(10Q23.31) WILD-TYPE  5 32 48 16
D53V5, multiclass
    clus
vv   DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE
  T1                         1                               5
  T2                        20                              32
  T3                         8                              48
  T4                         2                              16
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 24(10Q23.31) CNV       10 13  5  5
  DEL PEAK 24(10Q23.31) WILD-TYPE 34 36 18 10
D53V6, multiclass
    clus
vv   DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE
  N0                        10                              34
  N1                        13                              36
  N2                         5                              18
  N3                         5                              10
                                 vv
clus                              M0 M1 MX
  DEL PEAK 24(10Q23.31) CNV       32  3  1
  DEL PEAK 24(10Q23.31) WILD-TYPE 86 13  7
D53V7, multiclass
    clus
vv   DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE
  M0                        32                              86
  M1                         3                              13
  MX                         1                               7
                                 vv
clus                               I II III IV
  DEL PEAK 24(10Q23.31) CNV        8  7  10  6
  DEL PEAK 24(10Q23.31) WILD-TYPE 16 30  29 20
D53V8, multiclass
     clus
vv    DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE
  I                           8                              16
  II                          7                              30
  III                        10                              29
  IV                          6                              20
D53V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(10Q23.31) CNV          1   41
  DEL PEAK 24(10Q23.31) WILD-TYPE    4  134
     clus
vv    DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE
  NO                          1                               4
  YES                        41                             134
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 24(10Q23.31) CNV       29  1  3  6
  DEL PEAK 24(10Q23.31) WILD-TYPE 96  6  9 19
D53V10, multiclass
    clus
vv   DEL PEAK 24(10Q23.31) CNV DEL PEAK 24(10Q23.31) WILD-TYPE
  R0                        29                              96
  R1                         1                               6
  R2                         3                               9
  RX                         6                              19
D53V11, continuous

Clustering(54) Variable = Del Peak 25(11p15.4)
D54V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 25(11P15.4) CNV        24   8
  DEL PEAK 25(11P15.4) WILD-TYPE 100  11
      DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE 
                            32                            111 
      DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE 
                             8                             11 
$`DEL PEAK 25(11P15.4) CNV`
TCGA-BR-6564 TCGA-BR-7703 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-8080 TCGA-BR-8297 
        0.82         0.46         0.82         4.54         0.49         0.76 
TCGA-BR-A4J1 TCGA-BR-A4J4 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4304 
        0.72         0.53         0.69         0.36         0.30        27.02 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 
       14.01        29.98        47.05        19.07        21.99        18.94 
TCGA-CG-5717 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 
        6.94        12.03        15.02         4.01        55.04         3.58 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        4.54        15.65         9.63         4.14         1.68         3.65 
TCGA-EQ-5647 TCGA-HJ-7597 
        0.62        26.43 

$`DEL PEAK 25(11P15.4) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 
        1.22         1.48         1.25         0.13         1.05         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 
        0.82         1.32         0.69         0.95         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.43         0.13         0.23         0.10         0.72         0.49 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        2.24         0.82         0.49         0.07        20.02         3.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       12.03         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 
        0.95        70.06        28.96        31.04        65.10        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        7.99         8.65         9.80         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        5.95         6.61         4.70         4.04         2.93         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        7.79         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 
        3.02         3.58         1.02        59.05         5.03         0.56 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

      DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE 
                          0.30                           0.07 
      DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE 
                         55.04                          72.23 
      DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE 
                          4.34                           1.08 
[1] "0.3 - 55.0 (4.3)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 25(11P15.4) CNV"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 25(11P15.4) CNV" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 25(11P15.4) WILD-TYPE"       "DEL PEAK 25(11P15.4) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 25(11P15.4) WILD-TYPE" "DEL PEAK 25(11P15.4) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 25(11P15.4) WILD-TYPE" 
[1] "hr=" "1.6"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(11P15.4) CNV         15   27
  DEL PEAK 25(11P15.4) WILD-TYPE   57   81
        clus
vv       DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE
  FEMALE                       15                             57
  MALE                         27                             81
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 25(11P15.4) CNV                                           1
  DEL PEAK 25(11P15.4) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 25(11P15.4) CNV                                                            2
  DEL PEAK 25(11P15.4) WILD-TYPE                                                     14
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 25(11P15.4) CNV                                                                       0
  DEL PEAK 25(11P15.4) WILD-TYPE                                                                 8
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 25(11P15.4) CNV                                                              1
  DEL PEAK 25(11P15.4) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 25(11P15.4) CNV                                              1
  DEL PEAK 25(11P15.4) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 25(11P15.4) CNV                                           2
  DEL PEAK 25(11P15.4) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 25(11P15.4) CNV                                                           16
  DEL PEAK 25(11P15.4) WILD-TYPE                                                     57
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 25(11P15.4) CNV                                                       3
  DEL PEAK 25(11P15.4) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 25(11P15.4) CNV                                                        3
  DEL PEAK 25(11P15.4) WILD-TYPE                                                  0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 25(11P15.4) CNV                                                      5
  DEL PEAK 25(11P15.4) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 25(11P15.4) CNV                                                                            7
  DEL PEAK 25(11P15.4) WILD-TYPE                                                                     21
D54V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 25(11P15.4) CNV        2 18 11  3
  DEL PEAK 25(11P15.4) WILD-TYPE  4 34 45 15
D54V5, multiclass
    clus
vv   DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE
  T1                        2                              4
  T2                       18                             34
  T3                       11                             45
  T4                        3                             15
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 25(11P15.4) CNV        8 16  7  4
  DEL PEAK 25(11P15.4) WILD-TYPE 36 33 16 11
D54V6, multiclass
    clus
vv   DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE
  N0                        8                             36
  N1                       16                             33
  N2                        7                             16
  N3                        4                             11
                                vv
clus                             M0 M1 MX
  DEL PEAK 25(11P15.4) CNV       32  4  1
  DEL PEAK 25(11P15.4) WILD-TYPE 86 12  7
D54V7, multiclass
    clus
vv   DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE
  M0                       32                             86
  M1                        4                             12
  MX                        1                              7
                                vv
clus                              I II III IV
  DEL PEAK 25(11P15.4) CNV        6 10  10  7
  DEL PEAK 25(11P15.4) WILD-TYPE 18 27  29 19
D54V8, multiclass
     clus
vv    DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE
  I                          6                             18
  II                        10                             27
  III                       10                             29
  IV                         7                             19
D54V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(11P15.4) CNV          2   40
  DEL PEAK 25(11P15.4) WILD-TYPE    3  135
     clus
vv    DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE
  NO                         2                              3
  YES                       40                            135
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 25(11P15.4) CNV        24   3   4   8
  DEL PEAK 25(11P15.4) WILD-TYPE 101   4   8  17
D54V10, multiclass
    clus
vv   DEL PEAK 25(11P15.4) CNV DEL PEAK 25(11P15.4) WILD-TYPE
  R0                       24                            101
  R1                        3                              4
  R2                        4                              8
  RX                        8                             17
D54V11, continuous

Clustering(55) Variable = Del Peak 26(11q23.2)
D55V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(11Q23.2) CNV       29  6
  DEL PEAK 26(11Q23.2) WILD-TYPE 95 13
      DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE 
                            35                            108 
      DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE 
                             6                             13 
$`DEL PEAK 26(11Q23.2) CNV`
TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7722 TCGA-BR-8060 TCGA-BR-8080 TCGA-BR-8289 
        0.82         1.22         0.16         1.32         0.49         0.26 
TCGA-BR-8297 TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 
        0.76         0.72         0.23         0.72         0.49         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4437 TCGA-CG-4441 
        0.36         0.30         3.02        27.02         8.05        14.01 
TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5724 
       29.98        12.03         1.02         1.02         1.02        12.03 
TCGA-CG-5725 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6527 TCGA-D7-6815 TCGA-EQ-5647 
       15.02         3.58         4.54         4.14         3.65         0.62 
TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        3.02         1.02         0.56        26.43         2.53 

$`DEL PEAK 26(11Q23.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 
        1.08         0.82         0.69         0.95         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8592 
        0.26         0.43         1.18         1.55         1.48         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 
        0.43         0.13         0.10         2.24         0.82         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 
        0.07        20.02        15.95         1.02        52.96        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        4.01        47.05        19.07        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98         0.95        70.06        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        5.95         6.61         1.68         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        4.27         7.79         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 TCGA-IN-7808 
        0.20         3.58        59.05         5.03         6.87         3.55 

      DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE 
                          0.16                           0.07 
      DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE 
                         29.98                          72.23 
      DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE 
                          1.02                           1.35 
[1] "0.2 - 30.0 (1.0)" "0.1 - 72.2 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 26(11Q23.2) CNV" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 26(11Q23.2) WILD-TYPE"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 26(11Q23.2) CNV"       "DEL PEAK 26(11Q23.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 26(11Q23.2) WILD-TYPE" "DEL PEAK 26(11Q23.2) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 26(11Q23.2) CNV" 
[1] "hr=" "1.9"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11Q23.2) CNV         15   29
  DEL PEAK 26(11Q23.2) WILD-TYPE   57   79
        clus
vv       DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE
  FEMALE                       15                             57
  MALE                         29                             79
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 26(11Q23.2) CNV                                           2
  DEL PEAK 26(11Q23.2) WILD-TYPE                                     8
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 26(11Q23.2) CNV                                                            6
  DEL PEAK 26(11Q23.2) WILD-TYPE                                                     10
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 26(11Q23.2) CNV                                                                       2
  DEL PEAK 26(11Q23.2) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 26(11Q23.2) CNV                                                              1
  DEL PEAK 26(11Q23.2) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 26(11Q23.2) CNV                                              1
  DEL PEAK 26(11Q23.2) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 26(11Q23.2) CNV                                           2
  DEL PEAK 26(11Q23.2) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 26(11Q23.2) CNV                                                           15
  DEL PEAK 26(11Q23.2) WILD-TYPE                                                     58
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 26(11Q23.2) CNV                                                       3
  DEL PEAK 26(11Q23.2) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 26(11Q23.2) CNV                                                        2
  DEL PEAK 26(11Q23.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 26(11Q23.2) CNV                                                      3
  DEL PEAK 26(11Q23.2) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 26(11Q23.2) CNV                                                                            7
  DEL PEAK 26(11Q23.2) WILD-TYPE                                                                     21
D55V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 26(11Q23.2) CNV        2 13 12  4
  DEL PEAK 26(11Q23.2) WILD-TYPE  4 39 44 14
D55V5, multiclass
    clus
vv   DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE
  T1                        2                              4
  T2                       13                             39
  T3                       12                             44
  T4                        4                             14
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 26(11Q23.2) CNV        9 12  7  3
  DEL PEAK 26(11Q23.2) WILD-TYPE 35 37 16 12
D55V6, multiclass
    clus
vv   DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE
  N0                        9                             35
  N1                       12                             37
  N2                        7                             16
  N3                        3                             12
                                vv
clus                             M0 M1 MX
  DEL PEAK 26(11Q23.2) CNV       25  5  2
  DEL PEAK 26(11Q23.2) WILD-TYPE 93 11  6
D55V7, multiclass
    clus
vv   DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE
  M0                       25                             93
  M1                        5                             11
  MX                        2                              6
                                vv
clus                              I II III IV
  DEL PEAK 26(11Q23.2) CNV        5 11   8  6
  DEL PEAK 26(11Q23.2) WILD-TYPE 19 26  31 20
D55V8, multiclass
     clus
vv    DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE
  I                          5                             19
  II                        11                             26
  III                        8                             31
  IV                         6                             20
D55V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11Q23.2) CNV          2   42
  DEL PEAK 26(11Q23.2) WILD-TYPE    3  133
     clus
vv    DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE
  NO                         2                              3
  YES                       42                            133
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 26(11Q23.2) CNV       27  3  4  5
  DEL PEAK 26(11Q23.2) WILD-TYPE 98  4  8 20
D55V10, multiclass
    clus
vv   DEL PEAK 26(11Q23.2) CNV DEL PEAK 26(11Q23.2) WILD-TYPE
  R0                       27                             98
  R1                        3                              4
  R2                        4                              8
  RX                        5                             20
D55V11, continuous

Clustering(56) Variable = Del Peak 27(12p13.31)
D56V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 27(12P13.31) CNV        19   3
  DEL PEAK 27(12P13.31) WILD-TYPE 105  16
      DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE 
                             22                             121 
      DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE 
                              3                              16 
$`DEL PEAK 27(12P13.31) CNV`
TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7901 TCGA-BR-8060 TCGA-BR-8289 
        1.35         1.22         1.05         0.95         1.32         0.26 
TCGA-BR-A4PF TCGA-CD-5800 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-5725 TCGA-CG-5732 
        0.72         0.36         3.02        52.96        15.02        55.04 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 
        4.54        15.65         1.68         4.70         4.27         0.62 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-8631 TCGA-IP-7968 
        7.79        72.23         0.56         2.53 

$`DEL PEAK 27(12P13.31) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        0.82         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.26         0.43         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 
        0.49         2.24         0.82         0.69         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.07        20.02        27.02        15.95         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        8.65         3.58         9.80         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6818 
        0.69         5.95         6.61         4.14         3.65         4.04 
TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        2.93         6.54         2.01         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7806 
        3.58         1.02        59.05         5.03        26.43         6.87 
TCGA-IN-7808 
        3.55 

      DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE 
                           0.26                            0.07 
      DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE 
                          72.23                           70.06 
      DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE 
                          2.105                           1.120 
[1] "0.3 - 72.2 (2.1)" "0.1 - 70.1 (1.1)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 27(12P13.31) CNV"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 27(12P13.31) CNV"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 27(12P13.31) WILD-TYPE"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 27(12P13.31) CNV"       "DEL PEAK 27(12P13.31) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 27(12P13.31) CNV" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 27(12P13.31) WILD-TYPE" "DEL PEAK 27(12P13.31) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 27(12P13.31) CNV" 
[1] "hr=" "2"  
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(12P13.31) CNV         13   16
  DEL PEAK 27(12P13.31) WILD-TYPE   59   92
        clus
vv       DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE
  FEMALE                        13                              59
  MALE                          16                              92
                                 vv
clus                              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 27(12P13.31) CNV                                           0
  DEL PEAK 27(12P13.31) WILD-TYPE                                    10
                                 vv
clus                              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 27(12P13.31) CNV                                                            2
  DEL PEAK 27(12P13.31) WILD-TYPE                                                     14
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 27(12P13.31) CNV                                                                       3
  DEL PEAK 27(12P13.31) WILD-TYPE                                                                 5
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 27(12P13.31) CNV                                                              0
  DEL PEAK 27(12P13.31) WILD-TYPE                                                        3
                                 vv
clus                              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 27(12P13.31) CNV                                              0
  DEL PEAK 27(12P13.31) WILD-TYPE                                        1
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 27(12P13.31) CNV                                           1
  DEL PEAK 27(12P13.31) WILD-TYPE                                    15
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 27(12P13.31) CNV                                                           16
  DEL PEAK 27(12P13.31) WILD-TYPE                                                     57
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 27(12P13.31) CNV                                                       1
  DEL PEAK 27(12P13.31) WILD-TYPE                                                 6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 27(12P13.31) CNV                                                        1
  DEL PEAK 27(12P13.31) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 27(12P13.31) CNV                                                      3
  DEL PEAK 27(12P13.31) WILD-TYPE                                                7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 27(12P13.31) CNV                                                                            2
  DEL PEAK 27(12P13.31) WILD-TYPE                                                                     26
D56V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 27(12P13.31) CNV        0 10 10  2
  DEL PEAK 27(12P13.31) WILD-TYPE  6 42 46 16
D56V5, multiclass
    clus
vv   DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE
  T1                         0                               6
  T2                        10                              42
  T3                        10                              46
  T4                         2                              16
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 27(12P13.31) CNV        9  7  3  3
  DEL PEAK 27(12P13.31) WILD-TYPE 35 42 20 12
D56V6, multiclass
    clus
vv   DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE
  N0                         9                              35
  N1                         7                              42
  N2                         3                              20
  N3                         3                              12
                                 vv
clus                              M0 M1 MX
  DEL PEAK 27(12P13.31) CNV       20  2  2
  DEL PEAK 27(12P13.31) WILD-TYPE 98 14  6
D56V7, multiclass
    clus
vv   DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE
  M0                        20                              98
  M1                         2                              14
  MX                         2                               6
                                 vv
clus                               I II III IV
  DEL PEAK 27(12P13.31) CNV        7  4   8  3
  DEL PEAK 27(12P13.31) WILD-TYPE 17 33  31 23
D56V8, multiclass
     clus
vv    DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE
  I                           7                              17
  II                          4                              33
  III                         8                              31
  IV                          3                              23
D56V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 27(12P13.31) CNV          1   28
  DEL PEAK 27(12P13.31) WILD-TYPE    4  147
     clus
vv    DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE
  NO                          1                               4
  YES                        28                             147
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 27(12P13.31) CNV        16   3   2   5
  DEL PEAK 27(12P13.31) WILD-TYPE 109   4  10  20
D56V10, multiclass
    clus
vv   DEL PEAK 27(12P13.31) CNV DEL PEAK 27(12P13.31) WILD-TYPE
  R0                        16                             109
  R1                         3                               4
  R2                         2                              10
  RX                         5                              20
D56V11, continuous

Clustering(57) Variable = Del Peak 28(13q12.11)
D57V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 28(13Q12.11) CNV        17   2
  DEL PEAK 28(13Q12.11) WILD-TYPE 107  17
      DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE 
                             19                             124 
      DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE 
                              2                              17 
$`DEL PEAK 28(13Q12.11) CNV`
TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7959 TCGA-BR-8289 
        0.82         1.22         1.05         0.82         1.08         0.26 
TCGA-BR-8297 TCGA-BR-A4IY TCGA-BR-A4J6 TCGA-CG-4444 TCGA-CG-4466 TCGA-CG-5724 
        0.76         0.39         0.13        47.05        18.94        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-D7-5579 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6818 
       15.02        31.04         4.54         5.95         4.14         4.04 
TCGA-FP-7916 
        3.02 

$`DEL PEAK 28(13Q12.11) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 
        1.48         0.46         1.25         0.13         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 
        4.54         0.99         0.95         0.69         0.16         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8592 
        0.26         0.43         1.18         1.55         1.48         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.79         0.72         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-BR-A4QL 
        0.43         0.23         0.10         0.72         0.49         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
       20.02         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 
        8.05        54.05         4.01        14.01        29.98        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02         8.98         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5728 
        0.99         5.98         0.95        70.06        28.96        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 
        6.61         1.68         3.65         4.70         2.93         4.27 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        0.62         7.79         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 
        0.20         3.58         1.02        59.05         5.03         0.56 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

      DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE 
                           0.13                            0.07 
      DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE 
                          47.05                           72.23 
      DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE 
                          3.020                           1.235 
[1] "0.1 - 47.0 (3.0)" "0.1 - 72.2 (1.2)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 28(13Q12.11) CNV"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 28(13Q12.11) CNV"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 28(13Q12.11) CNV"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 28(13Q12.11) CNV" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 28(13Q12.11) WILD-TYPE"       "DEL PEAK 28(13Q12.11) CNV" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 28(13Q12.11) WILD-TYPE" "DEL PEAK 28(13Q12.11) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 28(13Q12.11) WILD-TYPE" 
[1] "hr=" "1.4"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(13Q12.11) CNV          9   19
  DEL PEAK 28(13Q12.11) WILD-TYPE   63   89
        clus
vv       DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE
  FEMALE                         9                              63
  MALE                          19                              89
                                 vv
clus                              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 28(13Q12.11) CNV                                           2
  DEL PEAK 28(13Q12.11) WILD-TYPE                                     8
                                 vv
clus                              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 28(13Q12.11) CNV                                                            2
  DEL PEAK 28(13Q12.11) WILD-TYPE                                                     14
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 28(13Q12.11) CNV                                                                       1
  DEL PEAK 28(13Q12.11) WILD-TYPE                                                                 7
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 28(13Q12.11) CNV                                                              1
  DEL PEAK 28(13Q12.11) WILD-TYPE                                                        2
                                 vv
clus                              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 28(13Q12.11) CNV                                              0
  DEL PEAK 28(13Q12.11) WILD-TYPE                                        1
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 28(13Q12.11) CNV                                           3
  DEL PEAK 28(13Q12.11) WILD-TYPE                                    13
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 28(13Q12.11) CNV                                                           11
  DEL PEAK 28(13Q12.11) WILD-TYPE                                                     62
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 28(13Q12.11) CNV                                                       2
  DEL PEAK 28(13Q12.11) WILD-TYPE                                                 5
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 28(13Q12.11) CNV                                                        1
  DEL PEAK 28(13Q12.11) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 28(13Q12.11) CNV                                                      1
  DEL PEAK 28(13Q12.11) WILD-TYPE                                                9
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 28(13Q12.11) CNV                                                                            2
  DEL PEAK 28(13Q12.11) WILD-TYPE                                                                     26
D57V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 28(13Q12.11) CNV        0  9 11  1
  DEL PEAK 28(13Q12.11) WILD-TYPE  6 43 45 17
D57V5, multiclass
    clus
vv   DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE
  T1                         0                               6
  T2                         9                              43
  T3                        11                              45
  T4                         1                              17
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 28(13Q12.11) CNV        6  8  4  3
  DEL PEAK 28(13Q12.11) WILD-TYPE 38 41 19 12
D57V6, multiclass
    clus
vv   DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE
  N0                         6                              38
  N1                         8                              41
  N2                         4                              19
  N3                         3                              12
                                 vv
clus                              M0 M1 MX
  DEL PEAK 28(13Q12.11) CNV       19  1  2
  DEL PEAK 28(13Q12.11) WILD-TYPE 99 15  6
D57V7, multiclass
    clus
vv   DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE
  M0                        19                              99
  M1                         1                              15
  MX                         2                               6
                                 vv
clus                               I II III IV
  DEL PEAK 28(13Q12.11) CNV        3  7   6  4
  DEL PEAK 28(13Q12.11) WILD-TYPE 21 30  33 22
D57V8, multiclass
     clus
vv    DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE
  I                           3                              21
  II                          7                              30
  III                         6                              33
  IV                          4                              22
D57V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(13Q12.11) CNV          4   24
  DEL PEAK 28(13Q12.11) WILD-TYPE    1  151
     clus
vv    DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE
  NO                          4                               1
  YES                        24                             151
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 28(13Q12.11) CNV        19   3   1   4
  DEL PEAK 28(13Q12.11) WILD-TYPE 106   4  11  21
D57V10, multiclass
    clus
vv   DEL PEAK 28(13Q12.11) CNV DEL PEAK 28(13Q12.11) WILD-TYPE
  R0                        19                             106
  R1                         3                               4
  R2                         1                              11
  RX                         4                              21
D57V11, continuous

Clustering(58) Variable = Del Peak 29(14q21.1)
D58V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(14Q21.1) CNV       31  5
  DEL PEAK 29(14Q21.1) WILD-TYPE 93 14
      DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE 
                            36                            107 
      DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE 
                             5                             14 
$`DEL PEAK 29(14Q21.1) CNV`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7715 
        1.35         0.82         0.62         1.22         0.66         1.05 
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7959 TCGA-BR-8286 TCGA-BR-A4J1 TCGA-BR-A4J6 
        0.82         4.54         1.08         0.43         0.72         0.13 
TCGA-BR-A4J9 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4437 
        0.10         0.36         0.49         0.07        20.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4477 TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-5579 
       54.05         4.01         1.02        12.03        15.02         4.54 
TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-EQ-8122 
       15.65         8.19         6.61         4.14         3.65         7.79 
TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        3.02         1.02         0.56        26.43         6.87         2.53 

$`DEL PEAK 29(14Q21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.26         1.22         1.48         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.13         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        0.16         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.46         0.72         0.26         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4PF 
        0.79         0.79         0.53         0.43         0.23         0.72 
TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4301 
        0.49         2.24         0.82         0.69         0.30         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4441 TCGA-CG-4443 
       27.02        15.95         1.02        52.96        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
       18.94         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6522 
        7.99         8.65         3.58         9.80         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        0.69         5.95         1.68         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        4.27         0.62         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7808 
        0.20         3.58        59.05         5.03         3.55 

      DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE 
                         54.05                          72.23 
      DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE 
                          1.94                           1.22 
[1] "0.1 - 54.0 (1.9)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 29(14Q21.1) WILD-TYPE"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 29(14Q21.1) CNV"       "DEL PEAK 29(14Q21.1) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 29(14Q21.1) CNV" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 29(14Q21.1) CNV" 
[1] "hr=" "1.4"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(14Q21.1) CNV         19   24
  DEL PEAK 29(14Q21.1) WILD-TYPE   53   84
        clus
vv       DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE
  FEMALE                       19                             53
  MALE                         24                             84
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 29(14Q21.1) CNV                                           1
  DEL PEAK 29(14Q21.1) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 29(14Q21.1) CNV                                                            5
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                     11
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 29(14Q21.1) CNV                                                                       2
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 29(14Q21.1) CNV                                                              1
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 29(14Q21.1) CNV                                              1
  DEL PEAK 29(14Q21.1) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 29(14Q21.1) CNV                                           5
  DEL PEAK 29(14Q21.1) WILD-TYPE                                    11
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 29(14Q21.1) CNV                                                           19
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                     54
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 29(14Q21.1) CNV                                                       1
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 29(14Q21.1) CNV                                                        2
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 29(14Q21.1) CNV                                                      2
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 29(14Q21.1) CNV                                                                            4
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                                     24
D58V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 29(14Q21.1) CNV        0  9 19  2
  DEL PEAK 29(14Q21.1) WILD-TYPE  6 43 37 16
D58V5, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE
  T1                        0                              6
  T2                        9                             43
  T3                       19                             37
  T4                        2                             16
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 29(14Q21.1) CNV        8 11  9  2
  DEL PEAK 29(14Q21.1) WILD-TYPE 36 38 14 13
D58V6, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE
  N0                        8                             36
  N1                       11                             38
  N2                        9                             14
  N3                        2                             13
                                vv
clus                             M0 M1 MX
  DEL PEAK 29(14Q21.1) CNV       29  2  2
  DEL PEAK 29(14Q21.1) WILD-TYPE 89 14  6
D58V7, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE
  M0                       29                             89
  M1                        2                             14
  MX                        2                              6
                                vv
clus                              I II III IV
  DEL PEAK 29(14Q21.1) CNV        3 11  12  4
  DEL PEAK 29(14Q21.1) WILD-TYPE 21 26  27 22
D58V8, multiclass
     clus
vv    DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE
  I                          3                             21
  II                        11                             26
  III                       12                             27
  IV                         4                             22
D58V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(14Q21.1) CNV          2   41
  DEL PEAK 29(14Q21.1) WILD-TYPE    3  134
     clus
vv    DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE
  NO                         2                              3
  YES                       41                            134
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 29(14Q21.1) CNV       27  2  2  6
  DEL PEAK 29(14Q21.1) WILD-TYPE 98  5 10 19
D58V10, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) CNV DEL PEAK 29(14Q21.1) WILD-TYPE
  R0                       27                             98
  R1                        2                              5
  R2                        2                             10
  RX                        6                             19
D58V11, continuous

Clustering(59) Variable = Del Peak 30(14q32.33)
D59V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 30(14Q32.33) CNV       38  3
  DEL PEAK 30(14Q32.33) WILD-TYPE 86 16
      DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE 
                             41                             102 
      DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE 
                              3                              16 
$`DEL PEAK 30(14Q32.33) CNV`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-6803 
        0.10         1.35         0.82         0.62         1.22         0.66 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8080 TCGA-BR-8286 
        1.05         0.82         1.08         1.32         0.49         0.43 
TCGA-BR-8289 TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4PF 
        0.26         0.39         0.72         0.13         0.10         0.72 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4443 
        0.49         0.07        20.02        52.96        54.05        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4477 TCGA-CG-5733 TCGA-D7-6519 TCGA-D7-6520 
       47.05        19.07         1.02        21.07        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6822 TCGA-EQ-8122 
        8.19         5.95         4.14         3.65         4.27         7.79 
TCGA-FP-7916 TCGA-FP-8099 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        3.02         1.02        26.43         6.87         2.53 

$`DEL PEAK 30(14Q32.33) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6566 
        5.62         0.95         1.41         1.35         0.85         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        1.71         2.17         0.99         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 
        0.16         0.82         0.69         0.95         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.59         0.92         0.79         0.79         0.53         0.43 
TCGA-BR-A4J8 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.23         0.49         2.24         0.82         0.69         0.36 
TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.30         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        4.01        14.01        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
       18.94         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 
        6.90         0.69         6.61         1.68         4.70         4.04 
TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        2.93         0.62         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-IN-7808 
        0.20         3.58        59.05         5.03         0.56         3.55 

      DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE 
                           0.07                            0.13 
      DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE 
                          54.05                           72.23 
      DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE 
                          1.320                           1.235 
[1] "0.1 - 54.0 (1.3)" "0.1 - 72.2 (1.2)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6521                      TCGA-D7-6522 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6521                      TCGA-D7-6522 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 30(14Q32.33) CNV"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6521                      TCGA-D7-6522 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 30(14Q32.33) WILD-TYPE"       "DEL PEAK 30(14Q32.33) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
      "DEL PEAK 30(14Q32.33) CNV" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 30(14Q32.33) CNV" 
[1] "hr=" "2.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 30(14Q32.33) CNV         20   31
  DEL PEAK 30(14Q32.33) WILD-TYPE   52   77
        clus
vv       DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE
  FEMALE                        20                              52
  MALE                          31                              77
                                 vv
clus                              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 30(14Q32.33) CNV                                           1
  DEL PEAK 30(14Q32.33) WILD-TYPE                                     9
                                 vv
clus                              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 30(14Q32.33) CNV                                                            8
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                      8
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 30(14Q32.33) CNV                                                                       2
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                                 6
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 30(14Q32.33) CNV                                                              2
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                        1
                                 vv
clus                              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 30(14Q32.33) CNV                                              1
  DEL PEAK 30(14Q32.33) WILD-TYPE                                        0
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 30(14Q32.33) CNV                                           6
  DEL PEAK 30(14Q32.33) WILD-TYPE                                    10
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 30(14Q32.33) CNV                                                           19
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                     54
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 30(14Q32.33) CNV                                                       2
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                 5
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 30(14Q32.33) CNV                                                        1
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 30(14Q32.33) CNV                                                      3
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 30(14Q32.33) CNV                                                                            5
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                                     23
D59V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 30(14Q32.33) CNV        1 16 15  2
  DEL PEAK 30(14Q32.33) WILD-TYPE  5 36 41 16
D59V5, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE
  T1                         1                               5
  T2                        16                              36
  T3                        15                              41
  T4                         2                              16
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 30(14Q32.33) CNV       11 13 10  1
  DEL PEAK 30(14Q32.33) WILD-TYPE 33 36 13 14
D59V6, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE
  N0                        11                              33
  N1                        13                              36
  N2                        10                              13
  N3                         1                              14
                                 vv
clus                              M0 M1 MX
  DEL PEAK 30(14Q32.33) CNV       35  0  2
  DEL PEAK 30(14Q32.33) WILD-TYPE 83 16  6
D59V7, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE
  M0                        35                              83
  M1                         0                              16
  MX                         2                               6
                                 vv
clus                               I II III IV
  DEL PEAK 30(14Q32.33) CNV        6  9  16  3
  DEL PEAK 30(14Q32.33) WILD-TYPE 18 28  23 23
D59V8, multiclass
     clus
vv    DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE
  I                           6                              18
  II                          9                              28
  III                        16                              23
  IV                          3                              23
D59V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 30(14Q32.33) CNV          3   48
  DEL PEAK 30(14Q32.33) WILD-TYPE    2  127
     clus
vv    DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE
  NO                          3                               2
  YES                        48                             127
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 30(14Q32.33) CNV       38  2  0  6
  DEL PEAK 30(14Q32.33) WILD-TYPE 87  5 12 19
D59V10, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) CNV DEL PEAK 30(14Q32.33) WILD-TYPE
  R0                        38                              87
  R1                         2                               5
  R2                         0                              12
  RX                         6                              19
D59V11, continuous

Clustering(60) Variable = Del Peak 31(15q15.1)
D60V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 31(15Q15.1) CNV       30  6
  DEL PEAK 31(15Q15.1) WILD-TYPE 94 13
      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                            36                            107 
      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                             6                             13 
$`DEL PEAK 31(15Q15.1) CNV`
TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7704 TCGA-BR-7901 TCGA-BR-8077 TCGA-BR-8286 
        0.62         1.22         1.25         0.95         0.69         0.43 
TCGA-BR-8289 TCGA-BR-A4J1 TCGA-BR-A4QI TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4436 
        0.26         0.72         0.49         0.49        20.02        52.96 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4466 TCGA-CG-4477 
       54.05         4.01        14.01        47.05        18.94         1.02 
TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 
        1.02        12.03        55.04         3.58         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 
        9.63         5.95         6.61         4.14         1.68         4.70 
TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IP-7968 
        4.27         7.79        72.23         3.58        26.43         2.53 

$`DEL PEAK 31(15Q15.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        0.82         1.32         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.26         1.18         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL 
        0.43         0.13         0.23         0.10         0.72         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.82         0.69         0.36         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4443 TCGA-CG-4449 
       27.02        15.95         1.02         8.05        29.98        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02         8.98         7.07        12.00 
TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6521 
        4.01        21.07         7.99         8.65         4.54         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 
        6.90         0.69         3.65         4.04         2.93         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-8099 
        6.54         2.01         0.39         0.20         3.02         1.02 
TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-IN-7806 TCGA-IN-7808 
       59.05         5.03         0.56         6.87         3.55 

      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                         72.23                          70.06 
      DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE 
                         4.205                          1.020 
[1] "0.3 - 72.2 (4.2)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 31(15Q15.1) CNV"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 31(15Q15.1) CNV" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 31(15Q15.1) WILD-TYPE"       "DEL PEAK 31(15Q15.1) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 31(15Q15.1) WILD-TYPE" "DEL PEAK 31(15Q15.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 31(15Q15.1) CNV" 
[1] "hr=" "1.7"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q15.1) CNV         16   30
  DEL PEAK 31(15Q15.1) WILD-TYPE   56   78
        clus
vv       DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  FEMALE                       16                             56
  MALE                         30                             78
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 31(15Q15.1) CNV                                           0
  DEL PEAK 31(15Q15.1) WILD-TYPE                                    10
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 31(15Q15.1) CNV                                                            3
  DEL PEAK 31(15Q15.1) WILD-TYPE                                                     13
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 31(15Q15.1) CNV                                                                       3
  DEL PEAK 31(15Q15.1) WILD-TYPE                                                                 5
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 31(15Q15.1) CNV                                                              0
  DEL PEAK 31(15Q15.1) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 31(15Q15.1) CNV                                              1
  DEL PEAK 31(15Q15.1) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 31(15Q15.1) CNV                                           5
  DEL PEAK 31(15Q15.1) WILD-TYPE                                    11
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 31(15Q15.1) CNV                                                           15
  DEL PEAK 31(15Q15.1) WILD-TYPE                                                     58
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 31(15Q15.1) CNV                                                       1
  DEL PEAK 31(15Q15.1) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 31(15Q15.1) CNV                                                        1
  DEL PEAK 31(15Q15.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 31(15Q15.1) CNV                                                      7
  DEL PEAK 31(15Q15.1) WILD-TYPE                                                3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 31(15Q15.1) CNV                                                                            9
  DEL PEAK 31(15Q15.1) WILD-TYPE                                                                     19
D60V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 31(15Q15.1) CNV        0 19 14  3
  DEL PEAK 31(15Q15.1) WILD-TYPE  6 33 42 15
D60V5, multiclass
    clus
vv   DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  T1                        0                              6
  T2                       19                             33
  T3                       14                             42
  T4                        3                             15
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 31(15Q15.1) CNV       12  5 10  7
  DEL PEAK 31(15Q15.1) WILD-TYPE 32 44 13  8
D60V6, multiclass
    clus
vv   DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  N0                       12                             32
  N1                        5                             44
  N2                       10                             13
  N3                        7                              8
                                vv
clus                             M0 M1 MX
  DEL PEAK 31(15Q15.1) CNV       32  3  4
  DEL PEAK 31(15Q15.1) WILD-TYPE 86 13  4
D60V7, multiclass
    clus
vv   DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  M0                       32                             86
  M1                        3                             13
  MX                        4                              4
                                vv
clus                              I II III IV
  DEL PEAK 31(15Q15.1) CNV        8  5  14  7
  DEL PEAK 31(15Q15.1) WILD-TYPE 16 32  25 19
D60V8, multiclass
     clus
vv    DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  I                          8                             16
  II                         5                             32
  III                       14                             25
  IV                         7                             19
D60V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q15.1) CNV          3   43
  DEL PEAK 31(15Q15.1) WILD-TYPE    2  132
     clus
vv    DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  NO                         3                              2
  YES                       43                            132
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 31(15Q15.1) CNV       31  4  2  6
  DEL PEAK 31(15Q15.1) WILD-TYPE 94  3 10 19
D60V10, multiclass
    clus
vv   DEL PEAK 31(15Q15.1) CNV DEL PEAK 31(15Q15.1) WILD-TYPE
  R0                       31                             94
  R1                        4                              3
  R2                        2                             10
  RX                        6                             19
D60V11, continuous

Clustering(61) Variable = Del Peak 32(16p13.3)
D61V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 32(16P13.3) CNV        17   3
  DEL PEAK 32(16P13.3) WILD-TYPE 107  16
      DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE 
                            20                            123 
      DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE 
                             3                             16 
$`DEL PEAK 32(16P13.3) CNV`
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7901 TCGA-BR-7959 TCGA-BR-8286 
        1.48         1.05         0.82         0.95         1.08         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-CD-5803 TCGA-CG-4444 
        0.26         1.18         0.72         0.72         0.07        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-5724 TCGA-D7-5579 TCGA-D7-6528 TCGA-D7-6822 
       19.07        12.03        12.03         4.54         1.68         4.27 
TCGA-EQ-8122 TCGA-F1-6875 
        7.79        72.23 

$`DEL PEAK 32(16P13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 
        0.26         1.22         0.46         1.25         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 
        0.16         4.54         0.99         0.69         0.16         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU 
        0.26         1.55         1.48         0.76         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.92         0.39         0.79         0.79         0.53         0.43 
TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 
        0.13         0.23         0.10         0.49         2.24         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4301 
        0.69         0.36         0.49         0.30        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       27.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        4.01        14.01        29.98        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 
       55.04        21.07         7.99         8.65         3.58         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        6.61         4.14         3.65         4.70         4.04         2.93 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        0.62         6.54         2.01         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 
        3.58         1.02        59.05         5.03         0.56        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

      DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE 
                         72.23                          70.06 
      DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE 
                          1.33                           1.25 
[1] "0.1 - 72.2 (1.3)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 32(16P13.3) CNV"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 32(16P13.3) WILD-TYPE"       "DEL PEAK 32(16P13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 32(16P13.3) CNV" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 32(16P13.3) WILD-TYPE" "DEL PEAK 32(16P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 32(16P13.3) WILD-TYPE" 
[1] "hr=" "1.6"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16P13.3) CNV          7   21
  DEL PEAK 32(16P13.3) WILD-TYPE   65   87
        clus
vv       DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE
  FEMALE                        7                             65
  MALE                         21                             87
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 32(16P13.3) CNV                                           1
  DEL PEAK 32(16P13.3) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 32(16P13.3) CNV                                                            3
  DEL PEAK 32(16P13.3) WILD-TYPE                                                     13
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 32(16P13.3) CNV                                                                       2
  DEL PEAK 32(16P13.3) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 32(16P13.3) CNV                                                              1
  DEL PEAK 32(16P13.3) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 32(16P13.3) CNV                                              0
  DEL PEAK 32(16P13.3) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 32(16P13.3) CNV                                           1
  DEL PEAK 32(16P13.3) WILD-TYPE                                    15
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 32(16P13.3) CNV                                                           12
  DEL PEAK 32(16P13.3) WILD-TYPE                                                     61
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 32(16P13.3) CNV                                                       4
  DEL PEAK 32(16P13.3) WILD-TYPE                                                 3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 32(16P13.3) CNV                                                        0
  DEL PEAK 32(16P13.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 32(16P13.3) CNV                                                      3
  DEL PEAK 32(16P13.3) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 32(16P13.3) CNV                                                                            0
  DEL PEAK 32(16P13.3) WILD-TYPE                                                                     28
D61V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 32(16P13.3) CNV        0  8  9  1
  DEL PEAK 32(16P13.3) WILD-TYPE  6 44 47 17
D61V5, multiclass
    clus
vv   DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE
  T1                        0                              6
  T2                        8                             44
  T3                        9                             47
  T4                        1                             17
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 32(16P13.3) CNV        6  8  2  2
  DEL PEAK 32(16P13.3) WILD-TYPE 38 41 21 13
D61V6, multiclass
    clus
vv   DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE
  N0                        6                             38
  N1                        8                             41
  N2                        2                             21
  N3                        2                             13
                                vv
clus                             M0 M1 MX
  DEL PEAK 32(16P13.3) CNV       20  1  0
  DEL PEAK 32(16P13.3) WILD-TYPE 98 15  8
D61V7, multiclass
    clus
vv   DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE
  M0                       20                             98
  M1                        1                             15
  MX                        0                              8
                                vv
clus                              I II III IV
  DEL PEAK 32(16P13.3) CNV        3  6   5  3
  DEL PEAK 32(16P13.3) WILD-TYPE 21 31  34 23
D61V8, multiclass
     clus
vv    DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE
  I                          3                             21
  II                         6                             31
  III                        5                             34
  IV                         3                             23
D61V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(16P13.3) CNV          1   27
  DEL PEAK 32(16P13.3) WILD-TYPE    4  148
     clus
vv    DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE
  NO                         1                              4
  YES                       27                            148
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 32(16P13.3) CNV        16   3   1   6
  DEL PEAK 32(16P13.3) WILD-TYPE 109   4  11  19
D61V10, multiclass
    clus
vv   DEL PEAK 32(16P13.3) CNV DEL PEAK 32(16P13.3) WILD-TYPE
  R0                       16                            109
  R1                        3                              4
  R2                        1                             11
  RX                        6                             19
D61V11, continuous

Clustering(62) Variable = Del Peak 33(16q23.1)
D62V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 33(16Q23.1) CNV       44  5
  DEL PEAK 33(16Q23.1) WILD-TYPE 80 14
      DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE 
                            49                             94 
      DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE 
                             5                             14 
$`DEL PEAK 33(16Q23.1) CNV`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6706 TCGA-BR-7703 
        5.62         0.10         1.35         0.82         2.17         0.46 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7959 TCGA-BR-8060 
        1.05         0.69         4.54         0.95         1.08         1.32 
TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.69         0.49         0.26         0.43         0.26         1.18 
TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 
        0.72         0.72         0.49         0.36         0.30         0.07 
TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4449 
       15.95        52.96         8.05        54.05        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
       12.03         7.07         1.02        70.06        12.03        15.02 
TCGA-CG-5727 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6525 TCGA-D7-6526 
       31.04         8.65         3.58         4.54         5.95         6.61 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-7998 
        1.68         4.70         4.04        72.23         3.02         3.58 
TCGA-IN-7808 
        3.55 

$`DEL PEAK 33(16Q23.1) WILD-TYPE`
TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 
        0.95         1.41         1.35         0.85         0.62         0.62 
TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        1.71         0.99         1.22         0.66         1.12         0.76 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 
        0.66         0.26         1.22         1.48         1.25         0.13 
TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 
        0.82         0.16         0.99         0.69         0.16         0.82 
TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.95         0.46         0.72         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.20         0.59         0.92         0.39         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QL 
        0.53         0.43         0.13         0.23         0.10         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.82         0.69         0.49        20.02         3.02        27.02 
TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 
        1.02         4.01        14.01        29.98        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98        18.94        12.00         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5726 
        1.02         1.02         0.99         5.98         0.95        28.96 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-6518 
       65.10         4.01        55.04        21.07         7.99         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 
       15.65         9.63         8.19         6.90         0.69         4.14 
TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 
        3.65         2.93         4.27         0.62         7.79         6.54 
TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 
        2.01         0.39         0.20         1.02        59.05         5.03 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        0.56        26.43         6.87         2.53 

      DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE 
                         72.23                          65.10 
      DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE 
                          3.02                           1.02 
[1] "0.1 - 72.2 (3.0)" "0.1 - 65.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-IP-7968 
"DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-IP-7968 
"DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 33(16Q23.1) CNV"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 33(16Q23.1) CNV" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 33(16Q23.1) WILD-TYPE" "DEL PEAK 33(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 33(16Q23.1) WILD-TYPE"       "DEL PEAK 33(16Q23.1) CNV" 
                    TCGA-IP-7968 
"DEL PEAK 33(16Q23.1) WILD-TYPE" 
[1] "hr=" "2.5"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(16Q23.1) CNV         20   46
  DEL PEAK 33(16Q23.1) WILD-TYPE   52   62
        clus
vv       DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE
  FEMALE                       20                             52
  MALE                         46                             62
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 33(16Q23.1) CNV                                           2
  DEL PEAK 33(16Q23.1) WILD-TYPE                                     8
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 33(16Q23.1) CNV                                                            5
  DEL PEAK 33(16Q23.1) WILD-TYPE                                                     11
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 33(16Q23.1) CNV                                                                       3
  DEL PEAK 33(16Q23.1) WILD-TYPE                                                                 5
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 33(16Q23.1) CNV                                                              2
  DEL PEAK 33(16Q23.1) WILD-TYPE                                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 33(16Q23.1) CNV                                              0
  DEL PEAK 33(16Q23.1) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 33(16Q23.1) CNV                                           8
  DEL PEAK 33(16Q23.1) WILD-TYPE                                     8
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 33(16Q23.1) CNV                                                           24
  DEL PEAK 33(16Q23.1) WILD-TYPE                                                     49
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 33(16Q23.1) CNV                                                       5
  DEL PEAK 33(16Q23.1) WILD-TYPE                                                 2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 33(16Q23.1) CNV                                                        2
  DEL PEAK 33(16Q23.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 33(16Q23.1) CNV                                                      6
  DEL PEAK 33(16Q23.1) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 33(16Q23.1) CNV                                                                            7
  DEL PEAK 33(16Q23.1) WILD-TYPE                                                                     21
D62V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 33(16Q23.1) CNV        1 22 24  5
  DEL PEAK 33(16Q23.1) WILD-TYPE  5 30 32 13
D62V5, multiclass
    clus
vv   DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE
  T1                        1                              5
  T2                       22                             30
  T3                       24                             32
  T4                        5                             13
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 33(16Q23.1) CNV       14 21  7  9
  DEL PEAK 33(16Q23.1) WILD-TYPE 30 28 16  6
D62V6, multiclass
    clus
vv   DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE
  N0                       14                             30
  N1                       21                             28
  N2                        7                             16
  N3                        9                              6
                                vv
clus                             M0 M1 MX
  DEL PEAK 33(16Q23.1) CNV       49  2  3
  DEL PEAK 33(16Q23.1) WILD-TYPE 69 14  5
D62V7, multiclass
    clus
vv   DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE
  M0                       49                             69
  M1                        2                             14
  MX                        3                              5
                                vv
clus                              I II III IV
  DEL PEAK 33(16Q23.1) CNV        8 18  18  6
  DEL PEAK 33(16Q23.1) WILD-TYPE 16 19  21 20
D62V8, multiclass
     clus
vv    DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE
  I                          8                             16
  II                        18                             19
  III                       18                             21
  IV                         6                             20
D62V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(16Q23.1) CNV          3   63
  DEL PEAK 33(16Q23.1) WILD-TYPE    2  112
     clus
vv    DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE
  NO                         3                              2
  YES                       63                            112
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 33(16Q23.1) CNV       46  4  1 10
  DEL PEAK 33(16Q23.1) WILD-TYPE 79  3 11 15
D62V10, multiclass
    clus
vv   DEL PEAK 33(16Q23.1) CNV DEL PEAK 33(16Q23.1) WILD-TYPE
  R0                       46                             79
  R1                        4                              3
  R2                        1                             11
  RX                       10                             15
D62V11, continuous

Clustering(63) Variable = Del Peak 34(17p12)
D63V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 34(17P12) CNV       52  6
  DEL PEAK 34(17P12) WILD-TYPE 72 13
      DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE 
                          58                           85 
      DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE 
                           6                           13 
$`DEL PEAK 34(17P12) CNV`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7704 
        0.10         1.35         0.62         1.22         1.48         1.25 
TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8080 
        1.05         4.54         1.08         1.32         0.69         0.49 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-A4J1 TCGA-BR-A4J8 
        0.43         0.26         1.18         1.48         0.72         0.23 
TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.72         0.69         0.36        20.02         3.02        27.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 
       52.96         8.05        54.05         4.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5725 
       19.07         7.07         1.02         1.02         1.02        15.02 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 
       31.04         4.01        55.04         4.54        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        8.19         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-8099 
        2.93         4.27         7.79        72.23         3.02         1.02 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        0.56        26.43         6.87         2.53 

$`DEL PEAK 34(17P12) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 
        0.76         0.66         0.26         1.22         0.46         0.13 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.82         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-8059 TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.16         0.82         0.95         0.46         0.72         0.26 
TCGA-BR-8295 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.55         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 
        0.79         0.79         0.53         0.43         0.13         0.10 
TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.49         2.24         0.82         0.49         0.30         0.07 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
       15.95         1.02        14.01        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98        18.94        12.00         1.02         1.02         6.94 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        12.03        28.96 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 
       65.10        21.07         7.99         8.65         3.58         9.80 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6817 TCGA-D7-6818 TCGA-EQ-5647 TCGA-F1-6177 
        6.90         0.69         4.70         4.04         0.62         6.54 
TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 
        2.01         0.39         0.20         3.58        59.05         5.03 
TCGA-IN-7808 
        3.55 

      DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE 
                        0.10                         0.07 
      DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE 
                       72.23                        70.06 
      DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE 
                        3.02                         0.99 
[1] "0.1 - 72.2 (3.0)" "0.1 - 70.1 (1.0)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-5719                   TCGA-CG-5720 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-IN-7806                   TCGA-IN-7808 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-IP-7968 
      "DEL PEAK 34(17P12) CNV" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-5719                   TCGA-CG-5720 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-IN-7806                   TCGA-IN-7808 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-IP-7968 
      "DEL PEAK 34(17P12) CNV" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8077                   TCGA-BR-8078 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-8291                   TCGA-BR-8295 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-8592                   TCGA-BR-A4IU 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4IV                   TCGA-BR-A4IY 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4IZ                   TCGA-BR-A4J1 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-BR-A4J2                   TCGA-BR-A4J4 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4J5                   TCGA-BR-A4J6 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4J8                   TCGA-BR-A4J9 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4PF                   TCGA-BR-A4QI 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-BR-A4QL                   TCGA-CD-5798 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CD-5799                   TCGA-CD-5800 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CD-5801                   TCGA-CD-5802 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CD-5803                   TCGA-CG-4300 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4301                   TCGA-CG-4304 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4305                   TCGA-CG-4306 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4436                   TCGA-CG-4437 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4438                   TCGA-CG-4440 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4441                   TCGA-CG-4443 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4444                   TCGA-CG-4449 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4455                   TCGA-CG-4460 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4462                   TCGA-CG-4465 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4466                   TCGA-CG-4469 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-4472                   TCGA-CG-4474 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-4477                   TCGA-CG-5716 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5717                   TCGA-CG-5718 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-5719                   TCGA-CG-5720 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5721                   TCGA-CG-5722 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5723                   TCGA-CG-5724 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5725                   TCGA-CG-5726 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5727                   TCGA-CG-5728 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-CG-5730                   TCGA-CG-5732 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-CG-5733                   TCGA-CG-5734 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-5577                   TCGA-D7-5578 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-5579                   TCGA-D7-6518 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6519                   TCGA-D7-6520 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6521                   TCGA-D7-6522 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6524                   TCGA-D7-6525 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6526                   TCGA-D7-6527 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6528                   TCGA-D7-6815 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-D7-6817                   TCGA-D7-6818 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-D7-6820                   TCGA-D7-6822 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-EQ-5647                   TCGA-EQ-8122 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-F1-6177                   TCGA-F1-6874 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-F1-6875                   TCGA-FP-7735 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-FP-7829                   TCGA-FP-7916 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-FP-7998                   TCGA-FP-8099 
"DEL PEAK 34(17P12) WILD-TYPE"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-FP-8209                   TCGA-FP-8210 
"DEL PEAK 34(17P12) WILD-TYPE" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-FP-8631                   TCGA-HJ-7597 
      "DEL PEAK 34(17P12) CNV"       "DEL PEAK 34(17P12) CNV" 
                  TCGA-IN-7806                   TCGA-IN-7808 
      "DEL PEAK 34(17P12) CNV" "DEL PEAK 34(17P12) WILD-TYPE" 
                  TCGA-IP-7968 
      "DEL PEAK 34(17P12) CNV" 
[1] "hr=" "3.1"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 34(17P12) CNV         26   43
  DEL PEAK 34(17P12) WILD-TYPE   46   65
        clus
vv       DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE
  FEMALE                     26                           46
  MALE                       43                           65
                              vv
clus                           STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 34(17P12) CNV                                           2
  DEL PEAK 34(17P12) WILD-TYPE                                     8
                              vv
clus                           STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 34(17P12) CNV                                                            6
  DEL PEAK 34(17P12) WILD-TYPE                                                     10
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 34(17P12) CNV                                                                       5
  DEL PEAK 34(17P12) WILD-TYPE                                                                 3
                              vv
clus                           STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 34(17P12) CNV                                                              2
  DEL PEAK 34(17P12) WILD-TYPE                                                        1
                              vv
clus                           STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 34(17P12) CNV                                              1
  DEL PEAK 34(17P12) WILD-TYPE                                        0
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 34(17P12) CNV                                           5
  DEL PEAK 34(17P12) WILD-TYPE                                    11
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 34(17P12) CNV                                                           20
  DEL PEAK 34(17P12) WILD-TYPE                                                     53
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 34(17P12) CNV                                                       4
  DEL PEAK 34(17P12) WILD-TYPE                                                 3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 34(17P12) CNV                                                        2
  DEL PEAK 34(17P12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 34(17P12) CNV                                                      7
  DEL PEAK 34(17P12) WILD-TYPE                                                3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 34(17P12) CNV                                                                           14
  DEL PEAK 34(17P12) WILD-TYPE                                                                     14
D63V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  DEL PEAK 34(17P12) CNV        1 27 20  3
  DEL PEAK 34(17P12) WILD-TYPE  5 25 36 15
D63V5, multiclass
    clus
vv   DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE
  T1                      1                            5
  T2                     27                           25
  T3                     20                           36
  T4                      3                           15
                              vv
clus                           N0 N1 N2 N3
  DEL PEAK 34(17P12) CNV       19 16 12  4
  DEL PEAK 34(17P12) WILD-TYPE 25 33 11 11
D63V6, multiclass
    clus
vv   DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE
  N0                     19                           25
  N1                     16                           33
  N2                     12                           11
  N3                      4                           11
                              vv
clus                           M0 M1 MX
  DEL PEAK 34(17P12) CNV       47  4  2
  DEL PEAK 34(17P12) WILD-TYPE 71 12  6
D63V7, multiclass
    clus
vv   DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE
  M0                     47                           71
  M1                      4                           12
  MX                      2                            6
                              vv
clus                            I II III IV
  DEL PEAK 34(17P12) CNV       11 18  13  8
  DEL PEAK 34(17P12) WILD-TYPE 13 19  26 18
D63V8, multiclass
     clus
vv    DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE
  I                       11                           13
  II                      18                           19
  III                     13                           26
  IV                       8                           18
D63V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 34(17P12) CNV          4   65
  DEL PEAK 34(17P12) WILD-TYPE    1  110
     clus
vv    DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE
  NO                       4                            1
  YES                     65                          110
                              vv
clus                           R0 R1 R2 RX
  DEL PEAK 34(17P12) CNV       51  5  3  5
  DEL PEAK 34(17P12) WILD-TYPE 74  2  9 20
D63V10, multiclass
    clus
vv   DEL PEAK 34(17P12) CNV DEL PEAK 34(17P12) WILD-TYPE
  R0                     51                           74
  R1                      5                            2
  R2                      3                            9
  RX                      5                           20
D63V11, continuous

Clustering(64) Variable = Del Peak 35(17q24.3)
D64V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 35(17Q24.3) CNV        20   4
  DEL PEAK 35(17Q24.3) WILD-TYPE 104  15
      DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE 
                            24                            119 
      DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE 
                             4                             15 
$`DEL PEAK 35(17Q24.3) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-7959 TCGA-BR-8077 
        1.35         0.62         1.05         4.54         1.08         0.69 
TCGA-BR-8291 TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CG-4300 
        1.18         0.72         0.23         0.72         0.49        20.02 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4474 
       54.05         4.01        14.01        47.05         7.07         1.02 
TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6820 TCGA-D7-6822 
        4.01         4.54         6.61         1.68         2.93         4.27 

$`DEL PEAK 35(17Q24.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 
        0.16         0.99         0.95         0.69         0.16         0.82 
TCGA-BR-8060 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        1.32         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 
        0.43         0.26         1.55         1.48         0.76         0.20 
TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.59         0.92         0.39         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 
        0.43         0.13         0.10         2.24         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        0.36         0.49         0.30         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4443 TCGA-CG-4449 
       15.95         1.02        52.96         8.05        29.98        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 
       12.03        21.99         1.02         8.98        18.94        12.00 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        3.58         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        0.69         5.95         4.14         3.65         4.70         4.04 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        0.62         7.79         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 
        0.20         3.02         3.58         1.02        59.05         5.03 
TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        0.56        26.43         6.87         3.55         2.53 

      DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE 
                          0.23                           0.07 
      DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE 
                         54.05                          72.23 
      DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE 
                         2.305                          1.220 
[1] "0.2 - 54.0 (2.3)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 35(17Q24.3) WILD-TYPE"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 35(17Q24.3) CNV" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 35(17Q24.3) CNV"       "DEL PEAK 35(17Q24.3) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 35(17Q24.3) WILD-TYPE" "DEL PEAK 35(17Q24.3) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 35(17Q24.3) WILD-TYPE" 
[1] "hr=" "1.6"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(17Q24.3) CNV         11   19
  DEL PEAK 35(17Q24.3) WILD-TYPE   61   89
        clus
vv       DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE
  FEMALE                       11                             61
  MALE                         19                             89
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 35(17Q24.3) CNV                                           1
  DEL PEAK 35(17Q24.3) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 35(17Q24.3) CNV                                                            4
  DEL PEAK 35(17Q24.3) WILD-TYPE                                                     12
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 35(17Q24.3) CNV                                                                       1
  DEL PEAK 35(17Q24.3) WILD-TYPE                                                                 7
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 35(17Q24.3) CNV                                                              1
  DEL PEAK 35(17Q24.3) WILD-TYPE                                                        2
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 35(17Q24.3) CNV                                              0
  DEL PEAK 35(17Q24.3) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 35(17Q24.3) CNV                                           1
  DEL PEAK 35(17Q24.3) WILD-TYPE                                    15
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 35(17Q24.3) CNV                                                           10
  DEL PEAK 35(17Q24.3) WILD-TYPE                                                     63
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 35(17Q24.3) CNV                                                       1
  DEL PEAK 35(17Q24.3) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 35(17Q24.3) CNV                                                        0
  DEL PEAK 35(17Q24.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 35(17Q24.3) CNV                                                      5
  DEL PEAK 35(17Q24.3) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 35(17Q24.3) CNV                                                                            5
  DEL PEAK 35(17Q24.3) WILD-TYPE                                                                     23
D64V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 35(17Q24.3) CNV        0  7  9  3
  DEL PEAK 35(17Q24.3) WILD-TYPE  6 45 47 15
D64V5, multiclass
    clus
vv   DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE
  T1                        0                              6
  T2                        7                             45
  T3                        9                             47
  T4                        3                             15
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 35(17Q24.3) CNV        5  4  8  2
  DEL PEAK 35(17Q24.3) WILD-TYPE 39 45 15 13
D64V6, multiclass
    clus
vv   DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE
  N0                        5                             39
  N1                        4                             45
  N2                        8                             15
  N3                        2                             13
                                vv
clus                             M0 M1 MX
  DEL PEAK 35(17Q24.3) CNV       20  3  0
  DEL PEAK 35(17Q24.3) WILD-TYPE 98 13  8
D64V7, multiclass
    clus
vv   DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE
  M0                       20                             98
  M1                        3                             13
  MX                        0                              8
                                vv
clus                              I II III IV
  DEL PEAK 35(17Q24.3) CNV        2  6   5  5
  DEL PEAK 35(17Q24.3) WILD-TYPE 22 31  34 21
D64V8, multiclass
     clus
vv    DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE
  I                          2                             22
  II                         6                             31
  III                        5                             34
  IV                         5                             21
D64V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(17Q24.3) CNV          0   30
  DEL PEAK 35(17Q24.3) WILD-TYPE    5  145
     clus
vv    DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE
  NO                         0                              5
  YES                       30                            145
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 35(17Q24.3) CNV        19   2   3   6
  DEL PEAK 35(17Q24.3) WILD-TYPE 106   5   9  19
D64V10, multiclass
    clus
vv   DEL PEAK 35(17Q24.3) CNV DEL PEAK 35(17Q24.3) WILD-TYPE
  R0                       19                            106
  R1                        2                              5
  R2                        3                              9
  RX                        6                             19
D64V11, continuous

Clustering(65) Variable = Del Peak 36(18q21.2)
D65V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 36(18Q21.2) CNV       54  4
  DEL PEAK 36(18Q21.2) WILD-TYPE 70 15
      DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE 
                            58                             85 
      DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE 
                             4                             15 
$`DEL PEAK 36(18Q21.2) CNV`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7716 TCGA-BR-7722 
        0.10         1.35         0.82         1.22         0.82         0.16 
TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-8060 TCGA-BR-8286 TCGA-BR-8289 
        4.54         0.95         0.69         1.32         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8297 TCGA-BR-A4IY TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4QI 
        1.18         0.76         0.39         0.13         0.23         0.49 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.69         0.36         0.49         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 
       27.02        52.96         8.05        54.05         4.01        47.05 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 
       12.03         4.01        55.04         8.65         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
       15.65         8.19         5.95         6.61         4.14         3.65 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        4.27         0.62         7.79         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7808 TCGA-IP-7968 
        1.02         0.56         3.55         2.53 

$`DEL PEAK 36(18Q21.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 
        5.62         0.95         1.41         1.35         0.85         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7851 TCGA-BR-7958 
        1.25         0.13         1.05         0.69         0.99         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        1.08         0.82         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8592 TCGA-BR-A4IU 
        0.72         0.26         1.55         1.48         0.20         0.59 
TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 
        0.92         0.79         0.72         0.79         0.53         0.43 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QL TCGA-CD-5798 TCGA-CG-4300 TCGA-CG-4305 
        0.10         0.72         2.24         0.82        20.02        15.95 
TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        1.02        14.01        29.98        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 
        1.02         8.98         1.02         1.02         6.94         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6522 
       65.10        21.07         7.99         3.58         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6177 
        0.69         1.68         4.70         4.04         2.93         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 
        2.01        72.23         0.39        59.05         5.03        26.43 
TCGA-IN-7806 
        6.87 

      DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE 
                         55.04                          72.23 
      DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE 
                          1.94                           1.12 
[1] "0.1 - 55.0 (1.9)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-IP-7968 
      "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-IP-7968 
      "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
      "DEL PEAK 36(18Q21.2) CNV"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 36(18Q21.2) WILD-TYPE" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 36(18Q21.2) CNV" "DEL PEAK 36(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 36(18Q21.2) WILD-TYPE"       "DEL PEAK 36(18Q21.2) CNV" 
                    TCGA-IP-7968 
      "DEL PEAK 36(18Q21.2) CNV" 
[1] "hr=" "2"  
D65V2, continuous
D65V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(18Q21.2) CNV         29   45
  DEL PEAK 36(18Q21.2) WILD-TYPE   43   63
        clus
vv       DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE
  FEMALE                       29                             43
  MALE                         45                             63
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 36(18Q21.2) CNV                                           3
  DEL PEAK 36(18Q21.2) WILD-TYPE                                     7
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 36(18Q21.2) CNV                                                            7
  DEL PEAK 36(18Q21.2) WILD-TYPE                                                      9
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 36(18Q21.2) CNV                                                                       3
  DEL PEAK 36(18Q21.2) WILD-TYPE                                                                 5
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 36(18Q21.2) CNV                                                              0
  DEL PEAK 36(18Q21.2) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 36(18Q21.2) CNV                                              0
  DEL PEAK 36(18Q21.2) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 36(18Q21.2) CNV                                           9
  DEL PEAK 36(18Q21.2) WILD-TYPE                                     7
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 36(18Q21.2) CNV                                                           26
  DEL PEAK 36(18Q21.2) WILD-TYPE                                                     47
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 36(18Q21.2) CNV                                                       3
  DEL PEAK 36(18Q21.2) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 36(18Q21.2) CNV                                                        2
  DEL PEAK 36(18Q21.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 36(18Q21.2) CNV                                                      5
  DEL PEAK 36(18Q21.2) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 36(18Q21.2) CNV                                                                           13
  DEL PEAK 36(18Q21.2) WILD-TYPE                                                                     15
D65V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 36(18Q21.2) CNV        0 24 26  8
  DEL PEAK 36(18Q21.2) WILD-TYPE  6 28 30 10
D65V5, multiclass
    clus
vv   DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE
  T1                        0                              6
  T2                       24                             28
  T3                       26                             30
  T4                        8                             10
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 36(18Q21.2) CNV       11 23 11 11
  DEL PEAK 36(18Q21.2) WILD-TYPE 33 26 12  4
D65V6, multiclass
    clus
vv   DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE
  N0                       11                             33
  N1                       23                             26
  N2                       11                             12
  N3                       11                              4
                                vv
clus                             M0 M1 MX
  DEL PEAK 36(18Q21.2) CNV       50  8  3
  DEL PEAK 36(18Q21.2) WILD-TYPE 68  8  5
D65V7, multiclass
    clus
vv   DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE
  M0                       50                             68
  M1                        8                              8
  MX                        3                              5
                                vv
clus                              I II III IV
  DEL PEAK 36(18Q21.2) CNV        7 13  21 14
  DEL PEAK 36(18Q21.2) WILD-TYPE 17 24  18 12
D65V8, multiclass
     clus
vv    DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE
  I                          7                             17
  II                        13                             24
  III                       21                             18
  IV                        14                             12
D65V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(18Q21.2) CNV          2   72
  DEL PEAK 36(18Q21.2) WILD-TYPE    3  103
     clus
vv    DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE
  NO                         2                              3
  YES                       72                            103
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 36(18Q21.2) CNV       44  6  5 10
  DEL PEAK 36(18Q21.2) WILD-TYPE 81  1  7 15
D65V10, multiclass
    clus
vv   DEL PEAK 36(18Q21.2) CNV DEL PEAK 36(18Q21.2) WILD-TYPE
  R0                       44                             81
  R1                        6                              1
  R2                        5                              7
  RX                       10                             15
D65V11, continuous

Clustering(66) Variable = Del Peak 37(19p13.3)
D66V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 37(19P13.3) CNV       41  6
  DEL PEAK 37(19P13.3) WILD-TYPE 83 13
      DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE 
                            47                             96 
      DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE 
                             6                             13 
$`DEL PEAK 37(19P13.3) CNV`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        1.35         0.62         1.48         0.82         4.54         0.95 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        1.32         0.69         0.43         0.26         1.18         1.55 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        0.39         0.72         0.72         0.69         0.36         0.30 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 
       20.02        27.02        52.96        54.05         4.01        29.98 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5725 
       19.07        21.99        18.94         1.02        12.03        15.02 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6527 
        4.01        55.04         3.58         9.63         5.95         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6875 
        3.65         4.70         4.04         2.93         7.79        72.23 
TCGA-FP-7916 TCGA-FP-8099 TCGA-FP-8631 TCGA-IN-7806 TCGA-IP-7968 
        3.02         1.02         0.56         6.87         2.53 

$`DEL PEAK 37(19P13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 
        0.46         1.25         0.13         1.05         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8078 
        0.99         0.69         0.16         1.08         0.82         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8296 TCGA-BR-8297 
        0.49         0.46         0.72         0.26         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QI TCGA-BR-A4QL 
        0.43         0.13         0.23         0.10         0.49         2.24 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 
        0.82         0.49         0.07         3.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
        8.05        14.01        47.05        12.03         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         0.99         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
       31.04        65.10        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 
        9.80        15.65         8.19         6.90         0.69         6.61 
TCGA-D7-6528 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 
        1.68         4.27         0.62         6.54         2.01         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7808 
        0.20         3.58        59.05         5.03        26.43         3.55 

      DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE 
                         72.23                          70.06 
      DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE 
                          3.58                           1.02 
[1] "0.3 - 72.2 (3.6)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 37(19P13.3) CNV"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 37(19P13.3) WILD-TYPE"       "DEL PEAK 37(19P13.3) CNV" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 37(19P13.3) WILD-TYPE" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 37(19P13.3) CNV" "DEL PEAK 37(19P13.3) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 37(19P13.3) CNV" 
[1] "hr=" "1.9"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(19P13.3) CNV         17   43
  DEL PEAK 37(19P13.3) WILD-TYPE   55   65
        clus
vv       DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE
  FEMALE                       17                             55
  MALE                         43                             65
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 37(19P13.3) CNV                                           2
  DEL PEAK 37(19P13.3) WILD-TYPE                                     8
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 37(19P13.3) CNV                                                            7
  DEL PEAK 37(19P13.3) WILD-TYPE                                                      9
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 37(19P13.3) CNV                                                                       4
  DEL PEAK 37(19P13.3) WILD-TYPE                                                                 4
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 37(19P13.3) CNV                                                              0
  DEL PEAK 37(19P13.3) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 37(19P13.3) CNV                                              0
  DEL PEAK 37(19P13.3) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 37(19P13.3) CNV                                           5
  DEL PEAK 37(19P13.3) WILD-TYPE                                    11
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 37(19P13.3) CNV                                                           22
  DEL PEAK 37(19P13.3) WILD-TYPE                                                     51
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 37(19P13.3) CNV                                                       2
  DEL PEAK 37(19P13.3) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 37(19P13.3) CNV                                                        2
  DEL PEAK 37(19P13.3) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 37(19P13.3) CNV                                                      5
  DEL PEAK 37(19P13.3) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 37(19P13.3) CNV                                                                           10
  DEL PEAK 37(19P13.3) WILD-TYPE                                                                     18
D66V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 37(19P13.3) CNV        1 19 19  4
  DEL PEAK 37(19P13.3) WILD-TYPE  5 33 37 14
D66V5, multiclass
    clus
vv   DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE
  T1                        1                              5
  T2                       19                             33
  T3                       19                             37
  T4                        4                             14
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 37(19P13.3) CNV       12 16  8  7
  DEL PEAK 37(19P13.3) WILD-TYPE 32 33 15  8
D66V6, multiclass
    clus
vv   DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE
  N0                       12                             32
  N1                       16                             33
  N2                        8                             15
  N3                        7                              8
                                vv
clus                             M0 M1 MX
  DEL PEAK 37(19P13.3) CNV       40  4  3
  DEL PEAK 37(19P13.3) WILD-TYPE 78 12  5
D66V7, multiclass
    clus
vv   DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE
  M0                       40                             78
  M1                        4                             12
  MX                        3                              5
                                vv
clus                              I II III IV
  DEL PEAK 37(19P13.3) CNV        7 14  12  9
  DEL PEAK 37(19P13.3) WILD-TYPE 17 23  27 17
D66V8, multiclass
     clus
vv    DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE
  I                          7                             17
  II                        14                             23
  III                       12                             27
  IV                         9                             17
D66V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(19P13.3) CNV          4   56
  DEL PEAK 37(19P13.3) WILD-TYPE    1  119
     clus
vv    DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE
  NO                         4                              1
  YES                       56                            119
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 37(19P13.3) CNV       42  2  4  6
  DEL PEAK 37(19P13.3) WILD-TYPE 83  5  8 19
D66V10, multiclass
    clus
vv   DEL PEAK 37(19P13.3) CNV DEL PEAK 37(19P13.3) WILD-TYPE
  R0                       42                             83
  R1                        2                              5
  R2                        4                              8
  RX                        6                             19
D66V11, continuous

Clustering(67) Variable = Del Peak 38(19q13.11)
D67V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 38(19Q13.11) CNV        20   3
  DEL PEAK 38(19Q13.11) WILD-TYPE 104  16
      DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE 
                             23                             120 
      DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE 
                              3                              16 
$`DEL PEAK 38(19Q13.11) CNV`
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-8060 TCGA-BR-8077 
        1.48         1.05         4.54         0.95         1.32         0.69 
TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4304 
        0.72         0.49         0.69         0.36        20.02        27.02 
TCGA-CG-4440 TCGA-CG-4466 TCGA-CG-5724 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        4.01        18.94        12.03         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-5647 TCGA-FP-8099 TCGA-FP-8631 
        4.70         2.93         0.62         1.02         0.56 

$`DEL PEAK 38(19Q13.11) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 
        0.26         1.22         0.46         1.25         0.13         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.69         0.16         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.82         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ TCGA-BR-A4J1 
        0.20         0.59         0.92         0.39         0.79         0.72 
TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.79         0.53         0.43         0.13         0.23         0.10 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        2.24         0.82         0.49         0.30         0.07         3.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 
       15.95         1.02        52.96         8.05        54.05        14.01 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
       29.98        47.05        19.07        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        5.95         3.65         4.04         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-FP-8209 TCGA-FP-8210 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       59.05         5.03        26.43         6.87         3.55         2.53 

      DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE 
                           0.36                            0.07 
      DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE 
                          27.02                           72.23 
      DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE 
                           1.48                            1.22 
[1] "0.4 - 27.0 (1.5)" "0.1 - 72.2 (1.2)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 38(19Q13.11) CNV"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 38(19Q13.11) WILD-TYPE"       "DEL PEAK 38(19Q13.11) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 38(19Q13.11) CNV" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 38(19Q13.11) WILD-TYPE" "DEL PEAK 38(19Q13.11) WILD-TYPE" 
                     TCGA-IP-7968 
"DEL PEAK 38(19Q13.11) WILD-TYPE" 
[1] "hr=" "1.5"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 38(19Q13.11) CNV         11   16
  DEL PEAK 38(19Q13.11) WILD-TYPE   61   92
        clus
vv       DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE
  FEMALE                        11                              61
  MALE                          16                              92
                                 vv
clus                              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 38(19Q13.11) CNV                                           0
  DEL PEAK 38(19Q13.11) WILD-TYPE                                    10
                                 vv
clus                              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 38(19Q13.11) CNV                                                            4
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                     12
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 38(19Q13.11) CNV                                                                       2
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                                 6
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 38(19Q13.11) CNV                                                              0
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                        3
                                 vv
clus                              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 38(19Q13.11) CNV                                              0
  DEL PEAK 38(19Q13.11) WILD-TYPE                                        1
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 38(19Q13.11) CNV                                           2
  DEL PEAK 38(19Q13.11) WILD-TYPE                                    14
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 38(19Q13.11) CNV                                                           10
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                     63
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 38(19Q13.11) CNV                                                       0
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                 7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 38(19Q13.11) CNV                                                        2
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                  1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 38(19Q13.11) CNV                                                      4
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 38(19Q13.11) CNV                                                                            3
  DEL PEAK 38(19Q13.11) WILD-TYPE                                                                     25
D67V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 38(19Q13.11) CNV        0  7 10  2
  DEL PEAK 38(19Q13.11) WILD-TYPE  6 45 46 16
D67V5, multiclass
    clus
vv   DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE
  T1                         0                               6
  T2                         7                              45
  T3                        10                              46
  T4                         2                              16
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 38(19Q13.11) CNV        6  5  3  5
  DEL PEAK 38(19Q13.11) WILD-TYPE 38 44 20 10
D67V6, multiclass
    clus
vv   DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE
  N0                         6                              38
  N1                         5                              44
  N2                         3                              20
  N3                         5                              10
                                 vv
clus                               M0  M1  MX
  DEL PEAK 38(19Q13.11) CNV        18   3   0
  DEL PEAK 38(19Q13.11) WILD-TYPE 100  13   8
D67V7, multiclass
    clus
vv   DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE
  M0                        18                             100
  M1                         3                              13
  MX                         0                               8
                                 vv
clus                               I II III IV
  DEL PEAK 38(19Q13.11) CNV        3  7   6  3
  DEL PEAK 38(19Q13.11) WILD-TYPE 21 30  33 23
D67V8, multiclass
     clus
vv    DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE
  I                           3                              21
  II                          7                              30
  III                         6                              33
  IV                          3                              23
D67V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 38(19Q13.11) CNV          1   26
  DEL PEAK 38(19Q13.11) WILD-TYPE    4  149
     clus
vv    DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE
  NO                          1                               4
  YES                        26                             149
                                 vv
clus                               R0  R1  R2  RX
  DEL PEAK 38(19Q13.11) CNV        19   0   3   3
  DEL PEAK 38(19Q13.11) WILD-TYPE 106   7   9  22
D67V10, multiclass
    clus
vv   DEL PEAK 38(19Q13.11) CNV DEL PEAK 38(19Q13.11) WILD-TYPE
  R0                        19                             106
  R1                         0                               7
  R2                         3                               9
  RX                         3                              22
D67V11, continuous

Clustering(68) Variable = Del Peak 39(20p12.1)
D68V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 39(20P12.1) CNV        18   5
  DEL PEAK 39(20P12.1) WILD-TYPE 106  14
      DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE 
                            23                            120 
      DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE 
                             5                             14 
$`DEL PEAK 39(20P12.1) CNV`
TCGA-B7-5816 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-7723 TCGA-BR-8289 TCGA-BR-A4IY 
        5.62         0.82         0.62         4.54         0.26         0.39 
TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5800 TCGA-CG-4301 TCGA-CG-4437 
        0.72         0.72         0.49         0.36         3.02         8.05 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5725 TCGA-D7-6519 
       54.05        14.01        12.00         6.94        15.02        15.65 
TCGA-D7-6526 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7735 TCGA-IP-7968 
        6.61         4.27         0.62         0.39         2.53 

$`DEL PEAK 39(20P12.1) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        0.10         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.72         0.26         0.43         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.76         0.20         0.59         0.92         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QL 
        0.53         0.43         0.13         0.23         0.10         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.69         0.49         0.30         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4443 
       27.02        15.95         1.02        52.96         4.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 
       18.94         7.07         1.02         1.02         1.02         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 
        7.99         8.65         3.58         4.54         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 
        3.65         4.70         4.04         2.93         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
        2.01        72.23         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       59.05         5.03         0.56        26.43         6.87         3.55 

      DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE 
                         54.05                          72.23 
      DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE 
                          3.02                           1.22 
[1] "0.3 - 54.0 (3.0)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 39(20P12.1) CNV"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 39(20P12.1) CNV"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 39(20P12.1) CNV"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 39(20P12.1) CNV" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 39(20P12.1) WILD-TYPE"       "DEL PEAK 39(20P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 39(20P12.1) WILD-TYPE" "DEL PEAK 39(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 39(20P12.1) CNV" 
[1] "hr=" "2.4"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(20P12.1) CNV         11   18
  DEL PEAK 39(20P12.1) WILD-TYPE   61   90
        clus
vv       DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE
  FEMALE                       11                             61
  MALE                         18                             90
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 39(20P12.1) CNV                                           0
  DEL PEAK 39(20P12.1) WILD-TYPE                                    10
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 39(20P12.1) CNV                                                            4
  DEL PEAK 39(20P12.1) WILD-TYPE                                                     12
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 39(20P12.1) CNV                                                                       1
  DEL PEAK 39(20P12.1) WILD-TYPE                                                                 7
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 39(20P12.1) CNV                                                              0
  DEL PEAK 39(20P12.1) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 39(20P12.1) CNV                                              0
  DEL PEAK 39(20P12.1) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 39(20P12.1) CNV                                           2
  DEL PEAK 39(20P12.1) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 39(20P12.1) CNV                                                           14
  DEL PEAK 39(20P12.1) WILD-TYPE                                                     59
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 39(20P12.1) CNV                                                       1
  DEL PEAK 39(20P12.1) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 39(20P12.1) CNV                                                        1
  DEL PEAK 39(20P12.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 39(20P12.1) CNV                                                      2
  DEL PEAK 39(20P12.1) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 39(20P12.1) CNV                                                                            3
  DEL PEAK 39(20P12.1) WILD-TYPE                                                                     25
D68V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 39(20P12.1) CNV        0 10  7  5
  DEL PEAK 39(20P12.1) WILD-TYPE  6 42 49 13
D68V5, multiclass
    clus
vv   DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE
  T1                        0                              6
  T2                       10                             42
  T3                        7                             49
  T4                        5                             13
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 39(20P12.1) CNV        8  7  5  2
  DEL PEAK 39(20P12.1) WILD-TYPE 36 42 18 13
D68V6, multiclass
    clus
vv   DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE
  N0                        8                             36
  N1                        7                             42
  N2                        5                             18
  N3                        2                             13
                                vv
clus                             M0 M1 MX
  DEL PEAK 39(20P12.1) CNV       19  2  3
  DEL PEAK 39(20P12.1) WILD-TYPE 99 14  5
D68V7, multiclass
    clus
vv   DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE
  M0                       19                             99
  M1                        2                             14
  MX                        3                              5
                                vv
clus                              I II III IV
  DEL PEAK 39(20P12.1) CNV        5  6   6  5
  DEL PEAK 39(20P12.1) WILD-TYPE 19 31  33 21
D68V8, multiclass
     clus
vv    DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE
  I                          5                             19
  II                         6                             31
  III                        6                             33
  IV                         5                             21
D68V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(20P12.1) CNV          2   27
  DEL PEAK 39(20P12.1) WILD-TYPE    3  148
     clus
vv    DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE
  NO                         2                              3
  YES                       27                            148
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 39(20P12.1) CNV        21   1   2   3
  DEL PEAK 39(20P12.1) WILD-TYPE 104   6  10  22
D68V10, multiclass
    clus
vv   DEL PEAK 39(20P12.1) CNV DEL PEAK 39(20P12.1) WILD-TYPE
  R0                       21                            104
  R1                        1                              6
  R2                        2                             10
  RX                        3                             22
D68V11, continuous

Clustering(69) Variable = Del Peak 40(20p12.1)
D69V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 40(20P12.1) CNV        18   5
  DEL PEAK 40(20P12.1) WILD-TYPE 106  14
      DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE 
                            23                            120 
      DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE 
                             5                             14 
$`DEL PEAK 40(20P12.1) CNV`
TCGA-B7-5816 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-7723 TCGA-BR-8289 TCGA-BR-A4IY 
        5.62         0.82         0.62         4.54         0.26         0.39 
TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5800 TCGA-CG-4301 TCGA-CG-4437 
        0.72         0.72         0.49         0.36         3.02         8.05 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5725 TCGA-D7-6519 
       54.05        14.01        12.00         6.94        15.02        15.65 
TCGA-D7-6526 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7735 TCGA-IP-7968 
        6.61         4.27         0.62         0.39         2.53 

$`DEL PEAK 40(20P12.1) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        0.10         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.72         0.26         0.43         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 
        0.76         0.20         0.59         0.92         0.79         0.79 
TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QL 
        0.53         0.43         0.13         0.23         0.10         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.69         0.49         0.30         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4443 
       27.02        15.95         1.02        52.96         4.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 
       18.94         7.07         1.02         1.02         1.02         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 
        7.99         8.65         3.58         4.54         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 
        3.65         4.70         4.04         2.93         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 
        2.01        72.23         0.20         3.02         3.58         1.02 
TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       59.05         5.03         0.56        26.43         6.87         3.55 

      DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE 
                          0.26                           0.07 
      DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE 
                         54.05                          72.23 
      DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE 
                          3.02                           1.22 
[1] "0.3 - 54.0 (3.0)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 40(20P12.1) CNV"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 40(20P12.1) CNV"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 40(20P12.1) CNV"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 40(20P12.1) CNV" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 40(20P12.1) WILD-TYPE"       "DEL PEAK 40(20P12.1) CNV" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
"DEL PEAK 40(20P12.1) WILD-TYPE" "DEL PEAK 40(20P12.1) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 40(20P12.1) CNV" 
[1] "hr=" "2.4"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(20P12.1) CNV         11   18
  DEL PEAK 40(20P12.1) WILD-TYPE   61   90
        clus
vv       DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE
  FEMALE                       11                             61
  MALE                         18                             90
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 40(20P12.1) CNV                                           0
  DEL PEAK 40(20P12.1) WILD-TYPE                                    10
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 40(20P12.1) CNV                                                            4
  DEL PEAK 40(20P12.1) WILD-TYPE                                                     12
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 40(20P12.1) CNV                                                                       1
  DEL PEAK 40(20P12.1) WILD-TYPE                                                                 7
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 40(20P12.1) CNV                                                              0
  DEL PEAK 40(20P12.1) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 40(20P12.1) CNV                                              0
  DEL PEAK 40(20P12.1) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 40(20P12.1) CNV                                           2
  DEL PEAK 40(20P12.1) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 40(20P12.1) CNV                                                           14
  DEL PEAK 40(20P12.1) WILD-TYPE                                                     59
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 40(20P12.1) CNV                                                       1
  DEL PEAK 40(20P12.1) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 40(20P12.1) CNV                                                        1
  DEL PEAK 40(20P12.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 40(20P12.1) CNV                                                      2
  DEL PEAK 40(20P12.1) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 40(20P12.1) CNV                                                                            3
  DEL PEAK 40(20P12.1) WILD-TYPE                                                                     25
D69V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 40(20P12.1) CNV        0 10  7  5
  DEL PEAK 40(20P12.1) WILD-TYPE  6 42 49 13
D69V5, multiclass
    clus
vv   DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE
  T1                        0                              6
  T2                       10                             42
  T3                        7                             49
  T4                        5                             13
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 40(20P12.1) CNV        8  7  5  2
  DEL PEAK 40(20P12.1) WILD-TYPE 36 42 18 13
D69V6, multiclass
    clus
vv   DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE
  N0                        8                             36
  N1                        7                             42
  N2                        5                             18
  N3                        2                             13
                                vv
clus                             M0 M1 MX
  DEL PEAK 40(20P12.1) CNV       19  2  3
  DEL PEAK 40(20P12.1) WILD-TYPE 99 14  5
D69V7, multiclass
    clus
vv   DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE
  M0                       19                             99
  M1                        2                             14
  MX                        3                              5
                                vv
clus                              I II III IV
  DEL PEAK 40(20P12.1) CNV        5  6   6  5
  DEL PEAK 40(20P12.1) WILD-TYPE 19 31  33 21
D69V8, multiclass
     clus
vv    DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE
  I                          5                             19
  II                         6                             31
  III                        6                             33
  IV                         5                             21
D69V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 40(20P12.1) CNV          2   27
  DEL PEAK 40(20P12.1) WILD-TYPE    3  148
     clus
vv    DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE
  NO                         2                              3
  YES                       27                            148
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 40(20P12.1) CNV        21   1   2   3
  DEL PEAK 40(20P12.1) WILD-TYPE 104   6  10  22
D69V10, multiclass
    clus
vv   DEL PEAK 40(20P12.1) CNV DEL PEAK 40(20P12.1) WILD-TYPE
  R0                       21                            104
  R1                        1                              6
  R2                        2                             10
  RX                        3                             22
D69V11, continuous

Clustering(70) Variable = Del Peak 41(21q11.2)
D70V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 41(21Q11.2) CNV       43  7
  DEL PEAK 41(21Q11.2) WILD-TYPE 81 12
      DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE 
                            50                             93 
      DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE 
                             7                             12 
$`DEL PEAK 41(21Q11.2) CNV`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6803 
        0.10         1.35         1.35         0.82         0.62         0.66 
TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7959 TCGA-BR-8060 
        1.25         1.05         0.82         4.54         1.08         1.32 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8284 TCGA-BR-8291 TCGA-BR-A4J1 TCGA-BR-A4J8 
        0.95         0.49         0.72         1.18         0.72         0.23 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4440 
        0.10         0.72         0.49        20.02        54.05         4.01 
TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 
       47.05        12.03        18.94         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5728 TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6518 
        1.02        12.03        65.10         4.01         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 
       15.65         5.95         6.61         3.65         4.70         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7829 TCGA-HJ-7597 
        4.27         0.62         7.79        72.23         0.20        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

$`DEL PEAK 41(21Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 
        5.62         0.95         1.41         0.85         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        2.17         0.99         1.22         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7717 
        0.26         1.22         1.48         0.46         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8059 
        0.16         0.99         0.95         0.69         0.16         0.82 
TCGA-BR-8077 TCGA-BR-8081 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 
        0.69         0.46         0.26         0.43         0.26         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4QL 
        0.79         0.79         0.53         0.43         0.13         2.24 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       14.01        29.98        19.07        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5720 TCGA-CG-5721 
        7.07        12.00         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5732 
        0.95        70.06        15.02        28.96        31.04        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6521 
       21.07         7.99         8.65         3.58         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-F1-6177 
        6.90         0.69         4.14         1.68         4.04         6.54 
TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 
        2.01         0.39         3.02         3.58         1.02        59.05 
TCGA-FP-8210 TCGA-FP-8631 TCGA-IN-7808 
        5.03         0.56         3.55 

      DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE 
                          0.10                           0.07 
      DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE 
                         72.23                          70.06 
      DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE 
                          1.94                           1.02 
[1] "0.1 - 72.2 (1.9)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6565                     TCGA-BR-6566 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-8080                     TCGA-BR-8081 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4455                     TCGA-CG-4460 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5719                     TCGA-CG-5720 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5725                     TCGA-CG-5726 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-CG-5730                     TCGA-CG-5732 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6526                     TCGA-D7-6527 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-D7-6817                     TCGA-D7-6818 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
      "DEL PEAK 41(21Q11.2) CNV"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 41(21Q11.2) WILD-TYPE" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 41(21Q11.2) WILD-TYPE"       "DEL PEAK 41(21Q11.2) CNV" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 41(21Q11.2) CNV" "DEL PEAK 41(21Q11.2) WILD-TYPE" 
                    TCGA-IP-7968 
      "DEL PEAK 41(21Q11.2) CNV" 
[1] "hr=" "1.3"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(21Q11.2) CNV         29   33
  DEL PEAK 41(21Q11.2) WILD-TYPE   43   75
        clus
vv       DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE
  FEMALE                       29                             43
  MALE                         33                             75
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 41(21Q11.2) CNV                                           1
  DEL PEAK 41(21Q11.2) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 41(21Q11.2) CNV                                                            7
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                      9
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 41(21Q11.2) CNV                                                                       2
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                                 6
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 41(21Q11.2) CNV                                                              2
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 41(21Q11.2) CNV                                              1
  DEL PEAK 41(21Q11.2) WILD-TYPE                                        0
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 41(21Q11.2) CNV                                           8
  DEL PEAK 41(21Q11.2) WILD-TYPE                                     8
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 41(21Q11.2) CNV                                                           21
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                     52
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 41(21Q11.2) CNV                                                       4
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                 3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 41(21Q11.2) CNV                                                        0
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 41(21Q11.2) CNV                                                      5
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 41(21Q11.2) CNV                                                                            9
  DEL PEAK 41(21Q11.2) WILD-TYPE                                                                     19
D70V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 41(21Q11.2) CNV        0 19 22  5
  DEL PEAK 41(21Q11.2) WILD-TYPE  6 33 34 13
D70V5, multiclass
    clus
vv   DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE
  T1                        0                              6
  T2                       19                             33
  T3                       22                             34
  T4                        5                             13
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 41(21Q11.2) CNV       13 17  9  7
  DEL PEAK 41(21Q11.2) WILD-TYPE 31 32 14  8
D70V6, multiclass
    clus
vv   DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE
  N0                       13                             31
  N1                       17                             32
  N2                        9                             14
  N3                        7                              8
                                vv
clus                             M0 M1 MX
  DEL PEAK 41(21Q11.2) CNV       40  5  4
  DEL PEAK 41(21Q11.2) WILD-TYPE 78 11  4
D70V7, multiclass
    clus
vv   DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE
  M0                       40                             78
  M1                        5                             11
  MX                        4                              4
                                vv
clus                              I II III IV
  DEL PEAK 41(21Q11.2) CNV        7 13  16  9
  DEL PEAK 41(21Q11.2) WILD-TYPE 17 24  23 17
D70V8, multiclass
     clus
vv    DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE
  I                          7                             17
  II                        13                             24
  III                       16                             23
  IV                         9                             17
D70V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(21Q11.2) CNV          2   60
  DEL PEAK 41(21Q11.2) WILD-TYPE    3  115
     clus
vv    DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE
  NO                         2                              3
  YES                       60                            115
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 41(21Q11.2) CNV       46  4  4  6
  DEL PEAK 41(21Q11.2) WILD-TYPE 79  3  8 19
D70V10, multiclass
    clus
vv   DEL PEAK 41(21Q11.2) CNV DEL PEAK 41(21Q11.2) WILD-TYPE
  R0                       46                             79
  R1                        4                              3
  R2                        4                              8
  RX                        6                             19
D70V11, continuous

Clustering(71) Variable = Del Peak 42(21q22.13)
D71V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 42(21Q22.13) CNV       46  9
  DEL PEAK 42(21Q22.13) WILD-TYPE 78 10
      DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE 
                             55                              88 
      DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE 
                              9                              10 
$`DEL PEAK 42(21Q22.13) CNV`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6803 
        0.10         1.35         1.35         0.82         0.62         0.66 
TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7959 TCGA-BR-8059 
        1.25         1.05         0.82         4.54         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8080 TCGA-BR-8284 TCGA-BR-8291 TCGA-BR-8296 TCGA-BR-8297 
        1.32         0.49         0.72         1.18         1.48         0.76 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI 
        0.39         0.72         0.23         0.10         0.72         0.49 
TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       20.02        54.05         4.01        47.05        19.07        12.03 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5724 
       18.94         7.07         1.02         6.94         1.02        12.03 
TCGA-CG-5725 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6518 
       15.02        65.10         4.01        55.04         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 
       15.65         5.95         6.61         3.65         4.70         2.93 
TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-8099 TCGA-HJ-7597 TCGA-IN-7806 
        0.62        72.23         0.20         1.02        26.43         6.87 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 42(21Q22.13) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 
        5.62         0.95         1.41         0.85         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        2.17         0.99         1.22         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7717 
        0.26         1.22         1.48         0.46         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-8077 
        0.16         0.99         0.95         0.69         0.16         0.69 
TCGA-BR-8078 TCGA-BR-8081 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 
        0.95         0.46         0.26         0.43         0.26         1.55 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        0.43         0.13         2.24         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.49         0.30         0.07         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 
        1.02        52.96         8.05        14.01        29.98        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5718 
        1.02         8.98        12.00         1.02         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98         0.95        70.06        28.96        31.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6521 
       21.07         7.99         8.65         3.58         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 
        6.90         0.69         4.14         1.68         4.04         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        7.79         6.54         2.01         0.39         3.02         3.58 
TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-IN-7808 
       59.05         5.03         0.56         3.55 

      DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE 
                           0.10                            0.07 
      DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE 
                          72.23                           70.06 
      DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE 
                           1.48                            1.02 
[1] "0.1 - 72.2 (1.5)" "0.1 - 70.1 (1.0)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8059                      TCGA-BR-8060 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4301                      TCGA-CG-4304 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5730                      TCGA-CG-5732 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 42(21Q22.13) CNV"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6528                      TCGA-D7-6815 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 42(21Q22.13) WILD-TYPE" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
"DEL PEAK 42(21Q22.13) WILD-TYPE"       "DEL PEAK 42(21Q22.13) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
      "DEL PEAK 42(21Q22.13) CNV" "DEL PEAK 42(21Q22.13) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 42(21Q22.13) CNV" 
[1] "hr=" "1.1"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(21Q22.13) CNV         27   41
  DEL PEAK 42(21Q22.13) WILD-TYPE   45   67
        clus
vv       DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE
  FEMALE                        27                              45
  MALE                          41                              67
                                 vv
clus                              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 42(21Q22.13) CNV                                           2
  DEL PEAK 42(21Q22.13) WILD-TYPE                                     8
                                 vv
clus                              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 42(21Q22.13) CNV                                                            8
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                      8
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 42(21Q22.13) CNV                                                                       3
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                                 5
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 42(21Q22.13) CNV                                                              2
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                        1
                                 vv
clus                              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 42(21Q22.13) CNV                                              1
  DEL PEAK 42(21Q22.13) WILD-TYPE                                        0
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 42(21Q22.13) CNV                                           8
  DEL PEAK 42(21Q22.13) WILD-TYPE                                     8
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 42(21Q22.13) CNV                                                           23
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                     50
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 42(21Q22.13) CNV                                                       5
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                 2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 42(21Q22.13) CNV                                                        0
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                  3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 42(21Q22.13) CNV                                                      4
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 42(21Q22.13) CNV                                                                           10
  DEL PEAK 42(21Q22.13) WILD-TYPE                                                                     18
D71V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 42(21Q22.13) CNV        0 19 23  5
  DEL PEAK 42(21Q22.13) WILD-TYPE  6 33 33 13
D71V5, multiclass
    clus
vv   DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE
  T1                         0                               6
  T2                        19                              33
  T3                        23                              33
  T4                         5                              13
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 42(21Q22.13) CNV       13 17  9  9
  DEL PEAK 42(21Q22.13) WILD-TYPE 31 32 14  6
D71V6, multiclass
    clus
vv   DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE
  N0                        13                              31
  N1                        17                              32
  N2                         9                              14
  N3                         9                               6
                                 vv
clus                              M0 M1 MX
  DEL PEAK 42(21Q22.13) CNV       44  5  3
  DEL PEAK 42(21Q22.13) WILD-TYPE 74 11  5
D71V7, multiclass
    clus
vv   DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE
  M0                        44                              74
  M1                         5                              11
  MX                         3                               5
                                 vv
clus                               I II III IV
  DEL PEAK 42(21Q22.13) CNV        6 14  15 11
  DEL PEAK 42(21Q22.13) WILD-TYPE 18 23  24 15
D71V8, multiclass
     clus
vv    DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE
  I                           6                              18
  II                         14                              23
  III                        15                              24
  IV                         11                              15
D71V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 42(21Q22.13) CNV          1   67
  DEL PEAK 42(21Q22.13) WILD-TYPE    4  108
     clus
vv    DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE
  NO                          1                               4
  YES                        67                             108
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 42(21Q22.13) CNV       50  5  4  8
  DEL PEAK 42(21Q22.13) WILD-TYPE 75  2  8 17
D71V10, multiclass
    clus
vv   DEL PEAK 42(21Q22.13) CNV DEL PEAK 42(21Q22.13) WILD-TYPE
  R0                        50                              75
  R1                         5                               2
  R2                         4                               8
  RX                         8                              17
D71V11, continuous

Clustering(72) Variable = Del Peak 43(22q13.31)
D72V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 43(22Q13.31) CNV       39  7
  DEL PEAK 43(22Q13.31) WILD-TYPE 85 12
      DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE 
                             46                              97 
      DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE 
                              7                              12 
$`DEL PEAK 43(22Q13.31) CNV`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 
        1.35         0.82         0.62         1.22         1.48         1.05 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8080 TCGA-BR-8295 TCGA-BR-8297 
        0.82         1.32         0.69         0.49         1.55         0.76 
TCGA-BR-A4IY TCGA-BR-A4J1 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5800 
        0.39         0.72         0.72         0.49         0.69         0.36 
TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 
        3.02         8.05        54.05         4.01        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5732 
       21.99        18.94         1.02        12.03        15.02        55.04 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        3.58         4.54        15.65         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7829 
        1.68         4.70         2.93         4.27         0.62         0.20 
TCGA-FP-8099 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        1.02         0.56        26.43         2.53 

$`DEL PEAK 43(22Q13.31) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.66         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        0.13         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8078 TCGA-BR-8081 
        0.95         0.69         0.16         1.08         0.95         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8296 
        0.72         0.26         0.43         0.26         1.18         1.48 
TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IZ TCGA-BR-A4J2 TCGA-BR-A4J4 
        0.20         0.59         0.92         0.79         0.79         0.53 
TCGA-BR-A4J5 TCGA-BR-A4J6 TCGA-BR-A4J8 TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 
        0.43         0.13         0.23         0.10         2.24         0.82 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 
        0.49         0.30         0.07        20.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 
        1.02        52.96        14.01        29.98        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        8.65         9.80         9.63         8.19         6.90         0.69 
TCGA-D7-6815 TCGA-D7-6818 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        3.65         4.04         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-FP-8209 TCGA-FP-8210 TCGA-IN-7806 
        0.39         3.02         3.58        59.05         5.03         6.87 
TCGA-IN-7808 
        3.55 

      DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE 
                           0.20                            0.07 
      DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE 
                          55.04                           72.23 
      DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE 
                          1.615                           1.080 
[1] "0.2 - 55.0 (1.6)" "0.1 - 72.2 (1.1)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6565                      TCGA-BR-6566 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8077                      TCGA-BR-8078 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-8592                      TCGA-BR-A4IU 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4IV                      TCGA-BR-A4IY 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4IZ                      TCGA-BR-A4J1 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4J2                      TCGA-BR-A4J4 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J5                      TCGA-BR-A4J6 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4J8                      TCGA-BR-A4J9 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-A4PF                      TCGA-BR-A4QI 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-BR-A4QL                      TCGA-CD-5798 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5799                      TCGA-CD-5800 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CD-5801                      TCGA-CD-5802 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5803                      TCGA-CG-4300 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4301                      TCGA-CG-4304 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4305                      TCGA-CG-4306 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4436                      TCGA-CG-4437 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4438                      TCGA-CG-4440 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4441                      TCGA-CG-4443 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4444                      TCGA-CG-4449 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4455                      TCGA-CG-4460 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-4462                      TCGA-CG-4465 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4466                      TCGA-CG-4469 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4472                      TCGA-CG-4474 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4477                      TCGA-CG-5716 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5717                      TCGA-CG-5718 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5719                      TCGA-CG-5720 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5721                      TCGA-CG-5722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5723                      TCGA-CG-5724 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-5725                      TCGA-CG-5726 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5727                      TCGA-CG-5728 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5730                      TCGA-CG-5732 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-CG-5733                      TCGA-CG-5734 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5577                      TCGA-D7-5578 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-5579                      TCGA-D7-6518 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6519                      TCGA-D7-6520 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6521                      TCGA-D7-6522 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6524                      TCGA-D7-6525 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-6526                      TCGA-D7-6527 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-D7-6528                      TCGA-D7-6815 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6817                      TCGA-D7-6818 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6820                      TCGA-D7-6822 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-EQ-5647                      TCGA-EQ-8122 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6177                      TCGA-F1-6874 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6875                      TCGA-FP-7735 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7829                      TCGA-FP-7916 
      "DEL PEAK 43(22Q13.31) CNV" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7998                      TCGA-FP-8099 
"DEL PEAK 43(22Q13.31) WILD-TYPE"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-FP-8209                      TCGA-FP-8210 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-8631                      TCGA-HJ-7597 
      "DEL PEAK 43(22Q13.31) CNV"       "DEL PEAK 43(22Q13.31) CNV" 
                     TCGA-IN-7806                      TCGA-IN-7808 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IP-7968 
      "DEL PEAK 43(22Q13.31) CNV" 
[1] "hr=" "1.3"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) CNV         26   33
  DEL PEAK 43(22Q13.31) WILD-TYPE   46   75
        clus
vv       DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE
  FEMALE                        26                              46
  MALE                          33                              75
                                 vv
clus                              STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 43(22Q13.31) CNV                                           1
  DEL PEAK 43(22Q13.31) WILD-TYPE                                     9
                                 vv
clus                              STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 43(22Q13.31) CNV                                                            7
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                      9
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 43(22Q13.31) CNV                                                                       3
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                                 5
                                 vv
clus                              STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 43(22Q13.31) CNV                                                              1
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                        2
                                 vv
clus                              STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 43(22Q13.31) CNV                                              1
  DEL PEAK 43(22Q13.31) WILD-TYPE                                        0
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 43(22Q13.31) CNV                                           4
  DEL PEAK 43(22Q13.31) WILD-TYPE                                    12
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 43(22Q13.31) CNV                                                           20
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                     53
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 43(22Q13.31) CNV                                                       4
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                 3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 43(22Q13.31) CNV                                                        2
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                  1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 43(22Q13.31) CNV                                                      7
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 43(22Q13.31) CNV                                                                            8
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                                     20
D72V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 43(22Q13.31) CNV        0 19 18  5
  DEL PEAK 43(22Q13.31) WILD-TYPE  6 33 38 13
D72V5, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE
  T1                         0                               6
  T2                        19                              33
  T3                        18                              38
  T4                         5                              13
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 43(22Q13.31) CNV       11 17  8  7
  DEL PEAK 43(22Q13.31) WILD-TYPE 33 32 15  8
D72V6, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE
  N0                        11                              33
  N1                        17                              32
  N2                         8                              15
  N3                         7                               8
                                 vv
clus                              M0 M1 MX
  DEL PEAK 43(22Q13.31) CNV       39  5  2
  DEL PEAK 43(22Q13.31) WILD-TYPE 79 11  6
D72V7, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE
  M0                        39                              79
  M1                         5                              11
  MX                         2                               6
                                 vv
clus                               I II III IV
  DEL PEAK 43(22Q13.31) CNV        7 13  13  8
  DEL PEAK 43(22Q13.31) WILD-TYPE 17 24  26 18
D72V8, multiclass
     clus
vv    DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE
  I                           7                              17
  II                         13                              24
  III                        13                              26
  IV                          8                              18
D72V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) CNV          3   56
  DEL PEAK 43(22Q13.31) WILD-TYPE    2  119
     clus
vv    DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE
  NO                          3                               2
  YES                        56                             119
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 43(22Q13.31) CNV       39  4  5  8
  DEL PEAK 43(22Q13.31) WILD-TYPE 86  3  7 17
D72V10, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) CNV DEL PEAK 43(22Q13.31) WILD-TYPE
  R0                        39                              86
  R1                         4                               3
  R2                         5                               7
  RX                         8                              17
D72V11, continuous

Clustering(73) Variable = Del Peak 44(Xp22.2)
D73V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 44(XP22.2) CNV        24   5
  DEL PEAK 44(XP22.2) WILD-TYPE 100  14
      DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE 
                           29                           114 
      DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE 
                            5                            14 
$`DEL PEAK 44(XP22.2) CNV`
TCGA-BR-6458 TCGA-BR-7716 TCGA-BR-8059 TCGA-BR-8289 TCGA-BR-8297 TCGA-BR-A4J6 
        1.35         0.82         0.82         0.26         0.76         0.13 
TCGA-BR-A4PF TCGA-BR-A4QI TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4438 TCGA-CG-4441 
        0.72         0.49         0.69         0.30        54.05        14.01 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5725 
       47.05        19.07        21.99         1.02         1.02        15.02 
TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        7.99         4.54         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-IN-7806 TCGA-IN-7808 
        4.70         4.27         0.62         6.87         3.55 

$`DEL PEAK 44(XP22.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        1.22         1.48         0.46         1.25         0.13         1.05 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        0.16         1.08         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8291 TCGA-BR-8295 
        0.46         0.72         0.26         0.43         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY TCGA-BR-A4IZ 
        1.48         0.20         0.59         0.92         0.39         0.79 
TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J8 TCGA-BR-A4J9 
        0.72         0.79         0.53         0.43         0.23         0.10 
TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 
        2.24         0.82         0.36         0.49         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
        4.01        29.98        12.03         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        12.03        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-D7-5577 
       31.04        65.10         4.01        55.04        21.07         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        3.58         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 
        0.69         5.95         4.04         2.93         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        1.02        59.05         5.03         0.56        26.43         2.53 

      DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE 
                         0.13                          0.07 
      DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE 
                        54.05                         72.23 
      DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE 
                         3.55                          1.20 
[1] "0.1 - 54.0 (3.5)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6526                    TCGA-D7-6527 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 44(XP22.2) WILD-TYPE"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 44(XP22.2) CNV" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 44(XP22.2) CNV"       "DEL PEAK 44(XP22.2) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 44(XP22.2) WILD-TYPE" 
[1] "hr=" "1.5"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) CNV         12   20
  DEL PEAK 44(XP22.2) WILD-TYPE   60   88
        clus
vv       DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE
  FEMALE                      12                            60
  MALE                        20                            88
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 44(XP22.2) CNV                                           1
  DEL PEAK 44(XP22.2) WILD-TYPE                                     9
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 44(XP22.2) CNV                                                            3
  DEL PEAK 44(XP22.2) WILD-TYPE                                                     13
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 44(XP22.2) CNV                                                                       2
  DEL PEAK 44(XP22.2) WILD-TYPE                                                                 6
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 44(XP22.2) CNV                                                              0
  DEL PEAK 44(XP22.2) WILD-TYPE                                                        3
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 44(XP22.2) CNV                                              0
  DEL PEAK 44(XP22.2) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 44(XP22.2) CNV                                           2
  DEL PEAK 44(XP22.2) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 44(XP22.2) CNV                                                            7
  DEL PEAK 44(XP22.2) WILD-TYPE                                                     66
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 44(XP22.2) CNV                                                       2
  DEL PEAK 44(XP22.2) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 44(XP22.2) CNV                                                        1
  DEL PEAK 44(XP22.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 44(XP22.2) CNV                                                      6
  DEL PEAK 44(XP22.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 44(XP22.2) CNV                                                                            7
  DEL PEAK 44(XP22.2) WILD-TYPE                                                                     21
D73V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 44(XP22.2) CNV        0 13  8  4
  DEL PEAK 44(XP22.2) WILD-TYPE  6 39 48 14
D73V5, multiclass
    clus
vv   DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE
  T1                       0                             6
  T2                      13                            39
  T3                       8                            48
  T4                       4                            14
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 44(XP22.2) CNV        6 10  6  3
  DEL PEAK 44(XP22.2) WILD-TYPE 38 39 17 12
D73V6, multiclass
    clus
vv   DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE
  N0                       6                            38
  N1                      10                            39
  N2                       6                            17
  N3                       3                            12
                               vv
clus                            M0 M1 MX
  DEL PEAK 44(XP22.2) CNV       23  3  0
  DEL PEAK 44(XP22.2) WILD-TYPE 95 13  8
D73V7, multiclass
    clus
vv   DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE
  M0                      23                            95
  M1                       3                            13
  MX                       0                             8
                               vv
clus                             I II III IV
  DEL PEAK 44(XP22.2) CNV        4  8   8  4
  DEL PEAK 44(XP22.2) WILD-TYPE 20 29  31 22
D73V8, multiclass
     clus
vv    DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE
  I                         4                            20
  II                        8                            29
  III                       8                            31
  IV                        4                            22
D73V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) CNV          1   31
  DEL PEAK 44(XP22.2) WILD-TYPE    4  144
     clus
vv    DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE
  NO                        1                             4
  YES                      31                           144
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 44(XP22.2) CNV        24   1   2   2
  DEL PEAK 44(XP22.2) WILD-TYPE 101   6  10  23
D73V10, multiclass
    clus
vv   DEL PEAK 44(XP22.2) CNV DEL PEAK 44(XP22.2) WILD-TYPE
  R0                      24                           101
  R1                       1                             6
  R2                       2                            10
  RX                       2                            23
D73V11, continuous

Clustering(74) Variable = Del Peak 45(Xp21.1)
D74V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 45(XP21.1) CNV        23   6
  DEL PEAK 45(XP21.1) WILD-TYPE 101  13
      DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE 
                           29                           114 
      DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE 
                            6                            13 
$`DEL PEAK 45(XP21.1) CNV`
TCGA-BR-6458 TCGA-BR-8059 TCGA-BR-8291 TCGA-BR-8297 TCGA-BR-A4J6 TCGA-BR-A4PF 
        1.35         0.82         1.18         0.76         0.13         0.72 
TCGA-BR-A4QI TCGA-CD-5802 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 
        0.49         0.30         8.05        54.05        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5724 TCGA-CG-5725 
       19.07        21.99         7.07         1.02        12.03        15.02 
TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 
        7.99         4.54         9.80         5.95         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-IN-7806 TCGA-IN-7808 
        4.70         4.27         0.62         6.87         3.55 

$`DEL PEAK 45(XP21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        1.22         1.48         0.46         1.25         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.82         0.69         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.69         0.16         1.08         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.55         1.48         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J8 
        0.79         0.72         0.79         0.53         0.43         0.23 
TCGA-BR-A4J9 TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        0.10         2.24         0.82         0.69         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
       52.96         4.01        14.01        12.03         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       18.94        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         0.99         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-D7-5577 
       31.04        65.10         4.01        55.04        21.07         8.65 
TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        3.58        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 
        6.61         4.14         4.04         2.93         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 TCGA-IP-7968 
        1.02        59.05         5.03         0.56        26.43         2.53 

      DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE 
                         0.13                          0.07 
      DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE 
                        54.05                         72.23 
      DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE 
                        4.540                         1.035 
[1] "0.1 - 54.0 (4.5)" "0.1 - 72.2 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-8592                    TCGA-BR-A4IU 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IV                    TCGA-BR-A4IY 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4IZ                    TCGA-BR-A4J1 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J2                    TCGA-BR-A4J4 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4J5                    TCGA-BR-A4J6 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-A4J8                    TCGA-BR-A4J9 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-A4PF                    TCGA-BR-A4QI 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-BR-A4QL                    TCGA-CD-5798 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5799                    TCGA-CD-5800 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5801                    TCGA-CD-5802 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CD-5803                    TCGA-CG-4300 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4301                    TCGA-CG-4304 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4305                    TCGA-CG-4306 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4436                    TCGA-CG-4437 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4438                    TCGA-CG-4440 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4441                    TCGA-CG-4443 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4444                    TCGA-CG-4449 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4455                    TCGA-CG-4460 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4462                    TCGA-CG-4465 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4466                    TCGA-CG-4469 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-4472                    TCGA-CG-4474 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4477                    TCGA-CG-5716 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5717                    TCGA-CG-5718 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5719                    TCGA-CG-5720 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5721                    TCGA-CG-5722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5723                    TCGA-CG-5724 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-CG-5725                    TCGA-CG-5726 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5727                    TCGA-CG-5728 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5730                    TCGA-CG-5732 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5733                    TCGA-CG-5734 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-5577                    TCGA-D7-5578 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5579                    TCGA-D7-6518 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6519                    TCGA-D7-6520 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6521                    TCGA-D7-6522 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6524                    TCGA-D7-6525 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6526                    TCGA-D7-6527 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6528                    TCGA-D7-6815 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-D7-6817                    TCGA-D7-6818 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6820                    TCGA-D7-6822 
"DEL PEAK 45(XP21.1) WILD-TYPE"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-EQ-5647                    TCGA-EQ-8122 
      "DEL PEAK 45(XP21.1) CNV" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6177                    TCGA-F1-6874 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6875                    TCGA-FP-7735 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7829                    TCGA-FP-7916 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7998                    TCGA-FP-8099 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-8209                    TCGA-FP-8210 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-8631                    TCGA-HJ-7597 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-IN-7806                    TCGA-IN-7808 
      "DEL PEAK 45(XP21.1) CNV"       "DEL PEAK 45(XP21.1) CNV" 
                   TCGA-IP-7968 
"DEL PEAK 45(XP21.1) WILD-TYPE" 
[1] "hr=" "1.4"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) CNV          9   23
  DEL PEAK 45(XP21.1) WILD-TYPE   63   85
        clus
vv       DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE
  FEMALE                       9                            63
  MALE                        23                            85
                               vv
clus                            STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 45(XP21.1) CNV                                           2
  DEL PEAK 45(XP21.1) WILD-TYPE                                     8
                               vv
clus                            STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 45(XP21.1) CNV                                                            3
  DEL PEAK 45(XP21.1) WILD-TYPE                                                     13
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 45(XP21.1) CNV                                                                       1
  DEL PEAK 45(XP21.1) WILD-TYPE                                                                 7
                               vv
clus                            STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 45(XP21.1) CNV                                                              0
  DEL PEAK 45(XP21.1) WILD-TYPE                                                        3
                               vv
clus                            STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 45(XP21.1) CNV                                              0
  DEL PEAK 45(XP21.1) WILD-TYPE                                        1
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 45(XP21.1) CNV                                           5
  DEL PEAK 45(XP21.1) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 45(XP21.1) CNV                                                            6
  DEL PEAK 45(XP21.1) WILD-TYPE                                                     67
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 45(XP21.1) CNV                                                       2
  DEL PEAK 45(XP21.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 45(XP21.1) CNV                                                        0
  DEL PEAK 45(XP21.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 45(XP21.1) CNV                                                      5
  DEL PEAK 45(XP21.1) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 45(XP21.1) CNV                                                                            7
  DEL PEAK 45(XP21.1) WILD-TYPE                                                                     21
D74V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 45(XP21.1) CNV        1 12  9  3
  DEL PEAK 45(XP21.1) WILD-TYPE  5 40 47 15
D74V5, multiclass
    clus
vv   DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE
  T1                       1                             5
  T2                      12                            40
  T3                       9                            47
  T4                       3                            15
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 45(XP21.1) CNV        6  8  5  6
  DEL PEAK 45(XP21.1) WILD-TYPE 38 41 18  9
D74V6, multiclass
    clus
vv   DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE
  N0                       6                            38
  N1                       8                            41
  N2                       5                            18
  N3                       6                             9
                               vv
clus                            M0 M1 MX
  DEL PEAK 45(XP21.1) CNV       22  4  0
  DEL PEAK 45(XP21.1) WILD-TYPE 96 12  8
D74V7, multiclass
    clus
vv   DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE
  M0                      22                            96
  M1                       4                            12
  MX                       0                             8
                               vv
clus                             I II III IV
  DEL PEAK 45(XP21.1) CNV        5  5   8  6
  DEL PEAK 45(XP21.1) WILD-TYPE 19 32  31 20
D74V8, multiclass
     clus
vv    DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE
  I                         5                            19
  II                        5                            32
  III                       8                            31
  IV                        6                            20
D74V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) CNV          0   32
  DEL PEAK 45(XP21.1) WILD-TYPE    5  143
     clus
vv    DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE
  NO                        0                             5
  YES                      32                           143
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 45(XP21.1) CNV        21   4   3   2
  DEL PEAK 45(XP21.1) WILD-TYPE 104   3   9  23
D74V10, multiclass
    clus
vv   DEL PEAK 45(XP21.1) CNV DEL PEAK 45(XP21.1) WILD-TYPE
  R0                      21                           104
  R1                       4                             3
  R2                       3                             9
  RX                       2                            23
D74V11, continuous

Clustering(75) Variable = Del Peak 46(Xq21.33)
D75V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 46(XQ21.33) CNV        19   2
  DEL PEAK 46(XQ21.33) WILD-TYPE 105  17
      DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE 
                            21                            122 
      DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE 
                             2                             17 
$`DEL PEAK 46(XQ21.33) CNV`
TCGA-B7-5818 TCGA-BR-7197 TCGA-BR-7716 TCGA-BR-8291 TCGA-BR-A4J8 TCGA-CD-5800 
        0.10         1.48         0.82         1.18         0.23         0.36 
TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4443 TCGA-CG-4444 
        0.30        20.02         3.02        52.96        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5725 TCGA-D7-6519 TCGA-D7-6528 
       19.07         7.07         1.02        15.02        15.65         1.68 
TCGA-D7-6822 TCGA-EQ-8122 TCGA-IN-7806 
        4.27         7.79         6.87 

$`DEL PEAK 46(XQ21.33) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 
        1.22         0.46         1.25         0.13         1.05         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8295 
        0.46         0.72         0.26         0.43         0.26         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-BR-8592 TCGA-BR-A4IU TCGA-BR-A4IV TCGA-BR-A4IY 
        1.48         0.76         0.20         0.59         0.92         0.39 
TCGA-BR-A4IZ TCGA-BR-A4J1 TCGA-BR-A4J2 TCGA-BR-A4J4 TCGA-BR-A4J5 TCGA-BR-A4J6 
        0.79         0.72         0.79         0.53         0.43         0.13 
TCGA-BR-A4J9 TCGA-BR-A4PF TCGA-BR-A4QI TCGA-BR-A4QL TCGA-CD-5798 TCGA-CD-5799 
        0.10         0.72         0.49         2.24         0.82         0.69 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.49         0.07        27.02        15.95         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
       54.05         4.01        14.01        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98        18.94        12.00         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 
        4.14         3.65         4.70         4.04         2.93         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-FP-8099 TCGA-FP-8209 TCGA-FP-8210 TCGA-FP-8631 TCGA-HJ-7597 
        3.58         1.02        59.05         5.03         0.56        26.43 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

      DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE 
                          0.10                           0.07 
      DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE 
                         52.96                          72.23 
      DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE 
                          4.27                           1.10 
[1] "0.1 - 53.0 (4.3)" "0.1 - 72.2 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 46(XQ21.33) CNV"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 46(XQ21.33) CNV"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8592                     TCGA-BR-A4IU 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IV                     TCGA-BR-A4IY 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4IZ                     TCGA-BR-A4J1 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J2                     TCGA-BR-A4J4 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J5                     TCGA-BR-A4J6 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4J8                     TCGA-BR-A4J9 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4PF                     TCGA-BR-A4QI 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-A4QL                     TCGA-CD-5798 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5799                     TCGA-CD-5800 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CD-5801                     TCGA-CD-5802 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CD-5803                     TCGA-CG-4300 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4301                     TCGA-CG-4304 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4305                     TCGA-CG-4306 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4436                     TCGA-CG-4437 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4438                     TCGA-CG-4440 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4441                     TCGA-CG-4443 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4444                     TCGA-CG-4449 
      "DEL PEAK 46(XQ21.33) CNV"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4455                     TCGA-CG-4460 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4462                     TCGA-CG-4465 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4466                     TCGA-CG-4469 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-CG-4472                     TCGA-CG-4474 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4477                     TCGA-CG-5716 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5717                     TCGA-CG-5718 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5719                     TCGA-CG-5720 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5721                     TCGA-CG-5722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5723                     TCGA-CG-5724 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5725                     TCGA-CG-5726 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5727                     TCGA-CG-5728 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5730                     TCGA-CG-5732 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5733                     TCGA-CG-5734 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5577                     TCGA-D7-5578 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5579                     TCGA-D7-6518 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6519                     TCGA-D7-6520 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6521                     TCGA-D7-6522 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6524                     TCGA-D7-6525 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6526                     TCGA-D7-6527 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6528                     TCGA-D7-6815 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6817                     TCGA-D7-6818 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6820                     TCGA-D7-6822 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-EQ-5647                     TCGA-EQ-8122 
"DEL PEAK 46(XQ21.33) WILD-TYPE"       "DEL PEAK 46(XQ21.33) CNV" 
                    TCGA-F1-6177                     TCGA-F1-6874 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6875                     TCGA-FP-7735 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7829                     TCGA-FP-7916 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7998                     TCGA-FP-8099 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8209                     TCGA-FP-8210 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-8631                     TCGA-HJ-7597 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-IN-7806                     TCGA-IN-7808 
      "DEL PEAK 46(XQ21.33) CNV" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" 
[1] "hr=" "2.3"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) CNV          9   14
  DEL PEAK 46(XQ21.33) WILD-TYPE   63   94
        clus
vv       DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE
  FEMALE                        9                             63
  MALE                         14                             94
                                vv
clus                             STOMACH  ADENOCARCINOMA  DIFFUSE TYPE
  DEL PEAK 46(XQ21.33) CNV                                           1
  DEL PEAK 46(XQ21.33) WILD-TYPE                                     9
                                vv
clus                             STOMACH  ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 46(XQ21.33) CNV                                                            1
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                     15
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA  NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 46(XQ21.33) CNV                                                                       1
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                                 7
                                vv
clus                             STOMACH  INTESTINAL ADENOCARCINOMA \302\240MUCINOUS TYPE
  DEL PEAK 46(XQ21.33) CNV                                                              0
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                        3
                                vv
clus                             STOMACH ADENOCARCINOMA  SIGNET RING TYPE
  DEL PEAK 46(XQ21.33) CNV                                              0
  DEL PEAK 46(XQ21.33) WILD-TYPE                                        1
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 46(XQ21.33) CNV                                           3
  DEL PEAK 46(XQ21.33) WILD-TYPE                                    13
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 46(XQ21.33) CNV                                                            6
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                     67
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 46(XQ21.33) CNV                                                       2
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 46(XQ21.33) CNV                                                        1
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 46(XQ21.33) CNV                                                      3
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 46(XQ21.33) CNV                                                                            4
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                                     24
D75V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 46(XQ21.33) CNV        1 11  6  2
  DEL PEAK 46(XQ21.33) WILD-TYPE  5 41 50 16
D75V5, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE
  T1                        1                              5
  T2                       11                             41
  T3                        6                             50
  T4                        2                             16
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 46(XQ21.33) CNV       10  5  2  2
  DEL PEAK 46(XQ21.33) WILD-TYPE 34 44 21 13
D75V6, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE
  N0                       10                             34
  N1                        5                             44
  N2                        2                             21
  N3                        2                             13
                                vv
clus                             M0 M1 MX
  DEL PEAK 46(XQ21.33) CNV       19  1  0
  DEL PEAK 46(XQ21.33) WILD-TYPE 99 15  8
D75V7, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE
  M0                       19                             99
  M1                        1                             15
  MX                        0                              8
                                vv
clus                              I II III IV
  DEL PEAK 46(XQ21.33) CNV        7  4   4  4
  DEL PEAK 46(XQ21.33) WILD-TYPE 17 33  35 22
D75V8, multiclass
     clus
vv    DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE
  I                          7                             17
  II                         4                             33
  III                        4                             35
  IV                         4                             22
D75V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) CNV          1   22
  DEL PEAK 46(XQ21.33) WILD-TYPE    4  153
     clus
vv    DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE
  NO                         1                              4
  YES                       22                            153
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 46(XQ21.33) CNV        16   2   1   1
  DEL PEAK 46(XQ21.33) WILD-TYPE 109   5  11  24
D75V10, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) CNV DEL PEAK 46(XQ21.33) WILD-TYPE
  R0                       16                            109
  R1                        2                              5
  R2                        1                             11
  RX                        1                             24
D75V11, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
                           "PATHOLOGY.T" 
                                      V6 
                           "PATHOLOGY.N" 
                                      V7 
                   "PATHOLOGICSPREAD(M)" 
                                      V8 
                           "TUMOR.STAGE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V10 
             "COMPLETENESS.OF.RESECTION" 
                                     V11 
                 "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
