		Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
CBWD1	14 (12%)	102	0.03416	1	0.05848	1	0.0057818	1	0.13215	1	0.048247	1	0.21578	1
KRAS	14 (12%)	102	0.090566	1	0.29188	1	0.36849	1	0.084908	1	0.68478	1	0.57789	1
PGM5	16 (14%)	100	0.011755	1	0.0026589	0.694	0.19182	1	0.30605	1	0.15799	1	0.22246	1
RPL22	9 (8%)	107	0.25426	1	NA	NA	0.12308	1	0.090997	1	0.29885	1	0.152	1
TP53	52 (45%)	64	0.00027819	0.0748	0.01105	1	0.094862	1	0.092253	1	0.002277	0.599	9.1372e-06	0.00247
TRIM48	10 (9%)	106	0.0062245	1	0.17368	1	0.043765	1	0.15957	1	0.083851	1	0.01549	1
XPOT	6 (5%)	110	0.070271	1	NA	NA	0.027736	1	0.37346	1	0.34032	1	0.12773	1
PIK3CA	24 (21%)	92	0.002555	0.669	1.2634e-06	0.000344	0.00032176	0.0862	0.19199	1	0.0282	1	0.01943	1
ACVR2A	13 (11%)	103	0.0021373	0.564	0.012761	1	0.0015786	0.418	0.080808	1	0.025321	1	0.020283	1
RHOA	7 (6%)	109	0.354	1	0.63863	1	0.47604	1	1	1	0.088105	1	1	1
ARID1A	22 (19%)	94	7.4206e-06	0.00201	0.007829	1	0.00076783	0.204	0.154	1	0.020268	1	0.00055106	0.147
OR8H3	10 (9%)	106	0.02378	1	0.088374	1	0.027391	1	0.57176	1	0.2209	1	0.47407	1
EDNRB	12 (10%)	104	0.11188	1	0.5427	1	0.8684	1	0.3236	1	0.47459	1	0.58768	1
ZNF804B	18 (16%)	98	0.23641	1	0.047038	1	0.079549	1	0.0027667	0.719	0.012699	1	0.27355	1
IRF2	8 (7%)	108	0.040452	1	0.051141	1	0.022544	1	0.88642	1	0.17619	1	0.32147	1
IAPP	4 (3%)	112	0.8588	1	NA	NA	0.73612	1	0.45516	1	0.14695	1	1	1
PCDH15	22 (19%)	94	0.63399	1	0.86327	1	0.92751	1	0.43852	1	0.59388	1	0.94677	1
SPRYD5	8 (7%)	108	0.84268	1	0.03433	1	0.44092	1	0.71742	1	0.26314	1	0.68717	1
TUSC3	9 (8%)	107	0.66581	1	0.88039	1	0.96845	1	1	1	1	1	0.71188	1
FGF22	3 (3%)	113	0.025718	1	NA	NA	0.027958	1	0.32715	1	1	1	0.57256	1
HLA-B	9 (8%)	107	0.12996	1	0.0037719	0.977	0.12308	1	0.11737	1	0.29885	1	0.63612	1
PTH2	3 (3%)	113	0.81174	1	0.30236	1	0.1715	1	0.16068	1	0.15484	1	0.38356	1
C17ORF63	3 (3%)	113	0.43521	1	NA	NA	0.73612	1	1	1	1	1	0.77319	1
SMAD4	7 (6%)	109	1	1	0.85865	1	0.18606	1	0.47652	1	1	1	0.75326	1
POTEG	6 (5%)	110	0.29396	1	0.48003	1	0.46858	1	0.85424	1	1	1	0.37521	1
RNF43	13 (11%)	103	0.0057561	1	0.016766	1	0.047847	1	0.078856	1	0.025321	1	0.059163	1
WBSCR17	12 (10%)	104	0.28777	1	0.0041922	1	0.081259	1	0.9034	1	0.028914	1	0.41232	1
PHF2	12 (10%)	104	0.0059959	1	0.012761	1	0.0074562	1	0.031148	1	0.028914	1	0.0060155	1
TPTE	14 (12%)	102	0.56272	1	1	1	0.46399	1	0.69818	1	0.041893	1	0.85633	1
CDH1	11 (9%)	105	0.13967	1	0.76903	1	0.016122	1	0.12131	1	0.091875	1	0.086186	1
CPS1	13 (11%)	103	0.73075	1	0.22346	1	0.51771	1	0.85574	1	0.90559	1	0.33521	1
INO80E	5 (4%)	111	0.53383	1	NA	NA	0.79769	1	0.71318	1	0.36943	1	1	1
ELF3	5 (4%)	111	0.1178	1	0.16344	1	0.26305	1	0.3576	1	0.49261	1	0.22087	1
PARK2	9 (8%)	107	0.23456	1	0.054822	1	0.30552	1	0.021936	1	0.86938	1	0.63612	1
LARP4B	5 (4%)	111	0.033876	1	0.17368	1	0.10753	1	0.3576	1	0.49261	1	0.22087	1
OR6K3	6 (5%)	110	0.34723	1	0.35767	1	0.080839	1	0.86749	1	0.43354	1	1	1
TM7SF4	7 (6%)	109	0.93149	1	0.22346	1	0.64243	1	0.78231	1	0.85169	1	0.37625	1
UPF3A	6 (5%)	110	0.34723	1	0.17368	1	0.090544	1	0.23135	1	0.43354	1	0.61864	1
C7ORF63	5 (4%)	111	0.1178	1	NA	NA	0.10753	1	0.56857	1	0.49261	1	0.69714	1
KDM4B	10 (9%)	106	0.022189	1	0.03433	1	0.21093	1	0.60705	1	0.2209	1	0.5304	1
KIAA0748	7 (6%)	109	0.77598	1	0.54468	1	0.27884	1	0.47328	1	0.85169	1	0.4319	1
OR8B4	3 (3%)	113	0.15524	1	0.0089393	1	NA	NA	NA	NA	1	1	0.57256	1
POM121L12	7 (6%)	109	0.061684	1	0.12175	1	0.098849	1	0.20868	1	0.85169	1	0.37625	1
RASA1	9 (8%)	107	0.4482	1	0.5507	1	0.46669	1	0.014824	1	0.066001	1	0.31393	1
SLITRK6	10 (9%)	106	0.25798	1	0.88039	1	0.52178	1	0.71742	1	0.14031	1	0.30674	1
TP53TG5	4 (3%)	112	0.02398	1	NA	NA	0.73612	1	1	1	1	1	0.64139	1
LHCGR	7 (6%)	109	1	1	0.81298	1	0.99887	1	0.71318	1	0.59745	1	0.27462	1
