Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	87	0.5397	1	0.39187	1	0.1464	1	1	1	0.62387	1	0.33107	1
1q gain	0 (0%)	46	0.0038637	1	0.046364	1	0.057493	1	0.46905	1	0.74078	1	1	1
2p gain	0 (0%)	89	0.58596	1	0.13655	1	0.78764	1	0.44287	1	0.0057396	1	0.58971	1
2q gain	0 (0%)	90	0.61819	1	0.056108	1	0.74827	1	0.23015	1	0.020969	1	1	1
3p gain	0 (0%)	90	0.37693	1	0.75849	1	0.10943	1	0.69048	1	0.24846	1	1	1
3q gain	0 (0%)	90	0.37693	1	0.75849	1	0.10943	1	0.69048	1	0.24846	1	1	1
4p gain	0 (0%)	91	0.76594	1	0.10083	1	0.0091365	1	0.010567	1	0.28834	1	1	1
5p gain	0 (0%)	69	0.03807	1	0.24715	1	0.526	1	0.15696	1	0.79688	1	0.50262	1
5q gain	0 (0%)	77	0.12885	1	0.52273	1	0.91165	1	0.33479	1	0.23026	1	0.45215	1
6p gain	0 (0%)	79	0.0047386	1	0.0069219	1	0.40183	1	0.77693	1	0.32183	1	1	1
6q gain	0 (0%)	86	0.080569	1	0.092229	1	0.21344	1	0.73189	1	0.49087	1	1	1
7p gain	0 (0%)	71	0.05886	1	0.19536	1	0.26674	1	0.11182	1	0.10659	1	1	1
7q gain	0 (0%)	71	0.10271	1	0.0098196	1	0.15988	1	0.1878	1	0.31113	1	1	1
8p gain	0 (0%)	83	0.33787	1	0.458	1	0.072785	1	0.30174	1	0.58616	1	1	1
8q gain	0 (0%)	52	4.6995e-09	1.97e-06	0.75034	1	0.19873	1	0.63122	1	0.18154	1	0.21791	1
9p gain	0 (0%)	93	0.20074	1	0.5707	1	0.84877	1	0.56827	1	0.13608	1	1	1
9q gain	0 (0%)	94	0.63338	1	0.79717	1	0.84877	1	0.56827	1	0.30228	1	1	1
10p gain	0 (0%)	90	0.43312	1	0.55286	1	0.051984	1	0.036338	1	0.46942	1	1	1
10q gain	0 (0%)	93	0.25834	1	0.4438	1	0.067155	1	0.56827	1	0.13608	1	1	1
11q gain	0 (0%)	94	0.19225	1	0.32475	1	NA	NA	0.42029	1	0.78443	1	1	1
12p gain	0 (0%)	93	0.20074	1	0.68847	1	NA	NA	0.17306	1	0.81996	1	1	1
12q gain	0 (0%)	92	0.073616	1	0.85049	1	0.80011	1	0.56827	1	0.70827	1	1	1
13q gain	0 (0%)	92	0.050758	1	0.59495	1	0.66559	1	0.30226	1	0.21293	1	1	1
14q gain	0 (0%)	92	0.37395	1	0.35981	1	NA	NA	0.50554	1	1	1	0.47105	1
15q gain	0 (0%)	92	0.31545	1	0.26384	1	0.47973	1	1	1	1	1	1	1
16p gain	0 (0%)	93	0.20074	1	0.5707	1	NA	NA	0.17306	1	0.67309	1	1	1
17p gain	0 (0%)	92	0.31545	1	0.099217	1	0.84877	1	0.56827	1	0.70827	1	1	1
17q gain	0 (0%)	77	0.040613	1	0.94735	1	0.71335	1	0.56647	1	0.76169	1	0.44699	1
18p gain	0 (0%)	94	0.19225	1	0.4438	1	NA	NA	0.17306	1	0.78443	1	1	1
18q gain	0 (0%)	93	0.25834	1	0.14359	1	0.6606	1	0.069741	1	0.67309	1	1	1
19p gain	0 (0%)	88	0.22262	1	0.014379	1	0.04817	1	0.036338	1	0.0021409	0.884	0.5921	1
19q gain	0 (0%)	87	0.48907	1	0.0054296	1	0.04803	1	0.0032062	1	0.071159	1	0.6001	1
20p gain	0 (0%)	77	0.37621	1	0.42654	1	0.076008	1	0.14353	1	0.47174	1	1	1
20q gain	0 (0%)	76	0.26269	1	0.3989	1	0.050465	1	0.25045	1	0.30807	1	1	1
21q gain	0 (0%)	91	0.31626	1	0.25374	1	0.8955	1	0.30226	1	1	1	1	1
22q gain	0 (0%)	89	0.23802	1	0.34972	1	0.073963	1	0.12219	1	1	1	0.58971	1
Xq gain	0 (0%)	92	0.12605	1	0.080012	1	0.50201	1	0.25831	1	0.21293	1	0.47105	1
1p loss	0 (0%)	82	0.4962	1	0.042183	1	0.10348	1	1	1	0.24652	1	1	1
1q loss	0 (0%)	92	0.31545	1	0.18845	1	0.016562	1	1	1	0.35132	1	1	1
2p loss	0 (0%)	94	0.38482	1	0.60316	1	0.28337	1	0.25831	1	0.43028	1	1	1
2q loss	0 (0%)	93	0.14405	1	0.45805	1	0.56843	1	0.63368	1	0.33355	1	1	1
3p loss	0 (0%)	89	0.18122	1	0.14657	1	0.012832	1	0.0039625	1	0.21031	1	0.58971	1
3q loss	0 (0%)	94	0.19225	1	0.035323	1	0.23876	1	0.069741	1	1	1	1	1
4p loss	0 (0%)	88	0.021012	1	0.49189	1	0.62534	1	0.47675	1	0.58894	1	0.28308	1
4q loss	0 (0%)	79	0.0010514	0.437	0.59134	1	0.91405	1	1	1	0.27981	1	0.21258	1
5q loss	0 (0%)	92	0.073616	1	0.5707	1	0.58044	1	1	1	0.27937	1	0.47105	1
6q loss	0 (0%)	77	0.51334	1	1	1	0.7295	1	0.13141	1	0.84147	1	1	1
7p loss	0 (0%)	92	0.050758	1	0.85049	1	0.00051401	0.214	0.63368	1	0.84497	1	1	1
7q loss	0 (0%)	90	0.033708	1	1	1	2.4119e-05	0.0101	1	1	0.77276	1	0.18875	1
8p loss	0 (0%)	56	0.0018375	0.761	0.64098	1	0.19635	1	0.62605	1	0.70825	1	0.51943	1
8q loss	0 (0%)	91	0.0015021	0.623	0.4724	1	0.0038855	1	0.63368	1	0.28834	1	1	1
9p loss	0 (0%)	77	0.46451	1	0.85	1	0.67436	1	0.56647	1	0.57331	1	0.69584	1
9q loss	0 (0%)	78	0.49873	1	0.42654	1	0.5549	1	0.77087	1	0.78711	1	1	1
10p loss	0 (0%)	91	0.20362	1	1	1	0.69598	1	1	1	0.85716	1	0.53643	1
10q loss	0 (0%)	80	0.053433	1	0.25544	1	0.16005	1	0.13141	1	0.35836	1	0.1081	1
11p loss	0 (0%)	91	0.31626	1	0.55286	1	0.62364	1	0.64308	1	0.85716	1	0.53643	1
11q loss	0 (0%)	89	0.23802	1	1	1	0.0088504	1	0.06149	1	0.55022	1	0.23537	1
12p loss	0 (0%)	89	0.33733	1	0.0086256	1	0.037382	1	0.69048	1	0.40962	1	1	1
13q loss	0 (0%)	67	0.021896	1	0.11496	1	0.045605	1	0.43598	1	0.055202	1	0.73287	1
14q loss	0 (0%)	71	0.011365	1	0.50785	1	0.010127	1	0.11182	1	0.56649	1	1	1
15q loss	0 (0%)	88	0.0052347	1	0.49189	1	0.98748	1	0.44287	1	0.58894	1	0.28308	1
16p loss	0 (0%)	77	0.077581	1	0.014879	1	0.0075338	1	0.039708	1	0.080736	1	0.45215	1
16q loss	0 (0%)	70	0.0042898	1	0.00023276	0.0973	0.07101	1	0.068009	1	0.036599	1	0.031206	1
17p loss	0 (0%)	56	0.0089914	1	0.018009	1	0.29884	1	0.63366	1	0.13517	1	0.0090028	1
17q loss	0 (0%)	91	0.76594	1	0.077974	1	0.69268	1	0.63368	1	0.85716	1	0.53643	1
18p loss	0 (0%)	87	0.19056	1	0.028965	1	0.0049336	1	0.71245	1	0.82576	1	1	1
18q loss	0 (0%)	86	0.024488	1	0.093787	1	0.013078	1	0.47675	1	0.64853	1	1	1
19p loss	0 (0%)	92	0.51968	1	0.19826	1	0.4007	1	1	1	1	1	0.47105	1
20p loss	0 (0%)	92	0.73354	1	0.59495	1	NA	NA	1	1	0.061772	1	0.1028	1
21q loss	0 (0%)	81	0.35718	1	0.56273	1	0.12986	1	0.47675	1	0.24739	1	0.01895	1
22q loss	0 (0%)	87	0.37381	1	0.47257	1	0.098085	1	0.15168	1	0.9097	1	0.33107	1