Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 0 (0%) 373 0.8156 1 0.64165 1 0.48564 1 0.60704 1 0.86727 1 0.24709 1 0.36001 1 0.17895 1 0.59568 1 0.91794 1 1q gain 0 (0%) 314 0.13272 1 0.10044 1 4.6141e-05 0.0338 0.014355 1 0.62657 1 0.47196 1 0.0072602 1 0.0080141 1 0.0071909 1 0.0060049 1 2p gain 0 (0%) 300 0.0069813 1 0.010523 1 1.0079e-11 7.83e-09 6.9144e-05 0.0505 0.065662 1 0.21632 1 0.00013075 0.0949 7.0367e-06 0.00524 0.86518 1 0.019518 1 2q gain 0 (0%) 354 0.12585 1 0.018064 1 5.4084e-06 0.00403 0.0039887 1 0.1881 1 0.30626 1 0.00059262 0.418 0.00076314 0.536 0.48684 1 0.30136 1 3p gain 0 (0%) 350 0.53925 1 0.21493 1 0.012253 1 0.00037495 0.268 0.74148 1 0.48568 1 0.17738 1 0.16522 1 0.86798 1 0.11024 1 3q gain 0 (0%) 217 0.071969 1 0.6531 1 0.011381 1 0.037327 1 0.30122 1 0.40231 1 0.038889 1 0.19253 1 0.94207 1 0.53314 1 4p gain 0 (0%) 383 0.1484 1 0.14985 1 0.0062022 1 0.15643 1 0.13225 1 0.46423 1 0.0063224 1 0.010181 1 0.50027 1 0.54652 1 4q gain 0 (0%) 390 1 1 0.7151 1 0.063381 1 NA NA NA NA NA NA 0.77106 1 0.012835 1 0.8628 1 1 1 5p gain 0 (0%) 212 0.85011 1 0.95357 1 1.8679e-06 0.0014 0.011327 1 0.21576 1 0.25047 1 0.091044 1 0.22788 1 0.54575 1 0.55656 1 5q gain 0 (0%) 354 0.075361 1 0.27863 1 0.098474 1 0.14781 1 0.68738 1 0.65592 1 0.077393 1 0.12426 1 0.50669 1 0.1504 1 6p gain 0 (0%) 361 0.0021312 1 0.010633 1 0.00057352 0.406 0.5445 1 0.64273 1 0.27902 1 0.26134 1 0.0077402 1 0.97139 1 0.91622 1 6q gain 0 (0%) 373 0.0028901 1 0.073023 1 0.0002334 0.168 0.0013192 0.914 0.72331 1 0.59445 1 0.083587 1 0.019587 1 0.65693 1 0.39931 1 7p gain 0 (0%) 288 0.17281 1 0.24789 1 2.7782e-06 0.00208 0.0012111 0.84 0.73142 1 0.9882 1 0.063911 1 0.0020504 1 0.45103 1 0.037235 1 7q gain 0 (0%) 296 0.065972 1 0.097862 1 1.7193e-13 1.34e-10 5.6477e-07 0.000429 0.82541 1 0.84978 1 0.001387 0.958 1.0313e-05 0.00764 0.15132 1 0.0066638 1 8p gain 0 (0%) 349 0.12873 1 0.14267 1 0.03157 1 0.087495 1 0.75552 1 0.44108 1 0.066771 1 0.001632 1 0.21738 1 0.092605 1 8q gain 0 (0%) 283 0.032641 1 0.03107 1 0.013483 1 0.0043869 1 0.70845 1 0.61797 1 0.0024587 1 0.0020676 1 0.013585 1 0.099365 1 9p gain 0 (0%) 378 0.28964 1 0.13856 1 0.14518 1 0.871 1 0.17173 1 0.00021605 0.156 0.089935 1 0.010966 1 0.44555 1 0.10892 1 9q gain 0 (0%) 365 0.18569 1 0.074962 1 0.0043232 1 0.046996 1 0.074636 1 0.0021231 1 0.015746 1 0.012754 1 0.034975 1 0.1213 1 10p gain 0 (0%) 375 0.2079 1 1 1 0.4224 1 0.37172 1 0.5302 1 0.3894 1 0.58121 1 0.73368 1 0.33237 1 0.5095 1 10q gain 0 (0%) 389 NA NA NA NA 0.32748 1 1 1 0.16228 1 0.68423 1 0.27483 1 0.6661 1 1 1 0.63434 1 11p gain 0 (0%) 374 1 1 0.92855 1 0.1362 1 0.12012 1 0.39773 1 0.27166 1 0.39214 1 0.11569 1 0.71843 1 0.66111 1 11q gain 0 (0%) 371 0.095959 1 0.49131 1 0.017092 1 0.034195 1 0.7732 1 0.37894 1 0.69106 1 0.10835 1 0.92655 1 0.60754 1 12p gain 0 (0%) 286 0.014628 1 0.11889 1 1.0288e-06 0.000778 0.078419 1 0.19698 1 0.59275 1 0.027944 1 0.065559 1 0.90678 1 0.3835 1 12q gain 0 (0%) 348 0.04883 1 0.25761 1 1.15e-06 0.000868 0.033894 1 0.21615 1 0.77484 1 0.41696 1 0.016147 1 0.56454 1 0.52623 1 13q gain 0 (0%) 387 0.76867 1 1 1 0.0030647 1 0.58205 1 0.28874 1 0.34943 1 0.6564 1 0.90301 1 0.40547 1 0.91173 1 14q gain 0 (0%) 356 0.10256 1 0.81952 1 0.54851 1 0.29611 1 1 1 0.67612 1 0.10982 1 0.41204 1 0.083059 1 0.034844 1 15q gain 0 (0%) 358 0.20566 1 0.033363 1 0.0017337 1 0.017602 1 0.19324 1 0.11233 1 0.0014833 1 0.073294 1 0.0022795 1 0.0095207 1 16p gain 0 (0%) 380 0.58909 1 1 1 0.00099342 0.691 0.3643 1 0.72331 1 0.34116 1 0.65169 1 0.14683 1 0.70757 1 0.66203 1 16q gain 0 (0%) 374 0.23729 1 0.84377 1 3.9893e-05 0.0293 0.42857 1 0.4554 1 0.15359 1 0.44119 1 0.95348 1 0.58244 1 0.30225 1 17p gain 0 (0%) 386 0.29798 1 0.08809 1 0.00089051 0.622 0.1235 1 0.06691 1 0.34268 1 0.20355 1 0.050399 1 0.0062208 1 0.011913 1 17q gain 0 (0%) 353 0.012958 1 0.028176 1 2.3598e-07 0.00018 0.0022885 1 0.41989 1 0.4197 1 0.0013779 0.954 0.0037042 1 0.16427 1 0.044251 1 18p gain 0 (0%) 330 0.0023568 1 9.4497e-06 0.00701 1.6587e-07 0.000126 0.022592 1 0.17522 1 0.091672 1 0.0028689 1 0.00030038 0.215 0.34803 1 0.022462 1 18q gain 0 (0%) 353 0.0078267 1 0.0004187 0.299 0.0028538 1 0.16515 1 0.13598 1 0.02853 1 0.0019382 1 0.0062125 1 0.087334 1 0.00074079 0.521 19p gain 0 (0%) 357 0.051591 1 0.16251 1 1.8649e-06 0.0014 0.0041479 1 0.00046844 0.333 0.0016581 1 0.0087636 1 0.0027812 1 0.04496 1 0.093325 1 19q gain 0 (0%) 339 0.057664 1 0.7726 1 0.00036831 0.263 0.38073 1 0.059527 1 0.019025 1 0.02182 1 0.0045326 1 0.77772 1 0.70539 1 20p gain 0 (0%) 288 0.13174 1 0.037917 1 5.0493e-08 3.87e-05 0.015861 1 0.68384 1 0.19449 1 0.096893 1 0.20996 1 0.27254 1 0.0077883 1 20q gain 0 (0%) 302 0.67207 1 0.59929 1 1.6017e-08 1.23e-05 0.18368 1 0.88479 1 0.33121 1 0.074609 1 0.047459 1 0.88213 1 0.16492 1 21q gain 0 (0%) 378 0.96811 1 0.42462 1 0.83924 1 0.0018712 1 0.52434 1 0.93666 1 0.68714 1 0.51432 1 0.64423 1 0.24528 1 22q gain 0 (0%) 300 0.0036214 1 0.0085753 1 7.9548e-09 6.13e-06 0.0020699 1 0.22719 1 0.016673 1 0.010268 1 0.011171 1 0.43357 1 0.0033483 1 Xq gain 0 (0%) 386 0.76867 1 1 1 0.056703 1 0.072886 1 0.45078 1 0.58167 1 0.85819 1 0.12968 1 0.25108 1 0.20352 1 1p loss 0 (0%) 338 0.0024775 1 0.0004187 0.299 6.4218e-12 5e-09 2.3958e-06 0.0018 0.25081 1 0.039161 1 1.1539e-06 0.00087 1.0166e-06 0.00077 0.48351 1 0.018669 1 1q loss 0 (0%) 388 NA NA NA NA 0.18254 1 0.24963 1 0.79944 1 0.32028 1 0.54654 1 1 1 0.82593 1 0.14749 1 2p loss 0 (0%) 393 NA NA NA NA 0.076896 1 NA NA NA NA NA NA 1 1 1 1 0.77709 1 0.592 1 2q loss 0 (0%) 386 0.53216 1 1 1 0.013091 1 0.13147 1 0.73676 1 0.58167 1 0.25865 1 0.25259 1 0.18828 1 0.44629 1 3p loss 0 (0%) 236 0.050134 1 0.44773 1 4.1104e-06 0.00307 7.1917e-05 0.0524 0.49291 1 0.27534 1 0.43903 1 0.016515 1 0.91185 1 0.53847 1 3q loss 0 (0%) 371 0.26082 1 0.70138 1 0.041067 1 0.12012 1 0.70323 1 1 1 0.6912 1 0.12792 1 0.54718 1 1 1 4p loss 0 (0%) 233 0.17085 1 0.031897 1 7.018e-10 5.44e-07 5.3601e-08 4.1e-05 0.053333 1 0.32731 1 0.023376 1 0.0073667 1 0.19208 1 0.18191 1 4q loss 0 (0%) 254 0.0079594 1 0.00097462 0.679 5.5926e-11 4.34e-08 1.9919e-06 0.0015 0.0087604 1 0.11931 1 3.8535e-05 0.0284 3.9715e-05 0.0292 0.19456 1 0.026895 1 5p loss 0 (0%) 373 0.12193 1 0.25212 1 0.033148 1 0.14001 1 0.25524 1 0.20719 1 0.84129 1 1 1 0.77211 1 0.91794 1 5q loss 0 (0%) 251 0.23046 1 0.21301 1 1.3e-09 1e-06 6.6525e-09 5.13e-06 0.054301 1 0.089154 1 0.063664 1 0.2927 1 0.25879 1 0.019677 1 6p loss 0 (0%) 362 0.079844 1 0.016367 1 0.00011246 0.0819 0.008466 1 0.07526 1 0.029667 1 0.0026111 1 0.00019486 0.141 0.93744 1 0.82168 1 6q loss 0 (0%) 357 0.16555 1 0.026439 1 0.014138 1 0.066717 1 0.088271 1 0.15857 1 0.1117 1 0.046358 1 1 1 0.53207 1 7p loss 0 (0%) 374 0.40774 1 0.83372 1 0.0020743 1 0.013071 1 0.50358 1 0.1136 1 0.68925 1 0.70979 1 0.23398 1 0.64995 1 7q loss 0 (0%) 384 0.47205 1 0.8485 1 0.078018 1 0.34049 1 1 1 0.69605 1 0.05922 1 0.023448 1 0.19878 1 0.12059 1 8p loss 0 (0%) 280 0.36687 1 0.55404 1 6.298e-08 4.81e-05 0.00078533 0.551 0.11457 1 0.82957 1 0.4745 1 0.23144 1 0.40231 1 0.63374 1 8q loss 0 (0%) 385 0.25403 1 0.039685 1 0.030261 1 0.025414 1 0.080133 1 0.28811 1 0.39234 1 0.0040961 1 0.64243 1 0.58905 1 9p loss 0 (0%) 233 0.11448 1 0.75117 1 2.7868e-16 2.18e-13 3.0404e-08 2.34e-05 0.9828 1 0.48695 1 0.29288 1 0.20747 1 0.38687 1 0.42722 1 9q loss 0 (0%) 294 0.0039378 1 0.0046861 1 5.6011e-14 4.37e-11 1.4944e-05 0.0111 1 1 0.3999 1 3.3785e-05 0.0249 1.6829e-05 0.0124 0.066524 1 0.0083648 1 10p loss 0 (0%) 310 0.054263 1 0.13391 1 9.5565e-10 7.39e-07 4.3954e-06 0.00328 1 1 0.13227 1 0.00081293 0.569 0.00013093 0.0949 0.061627 1 0.00043234 0.307 10q loss 0 (0%) 306 0.0091286 1 0.00015338 0.111 6.1909e-12 4.82e-09 6.3741e-05 0.0467 0.26581 1 0.011788 1 0.00023262 0.167 8.8623e-06 0.00658 0.0067557 1 0.00059101 0.417 11p loss 0 (0%) 338 0.012908 1 0.18435 1 0.00017517 0.127 0.0033201 1 0.090483 1 0.041494 1 0.032405 1 0.15532 1 0.25254 1 0.49271 1 11q loss 0 (0%) 355 0.42033 1 0.48286 1 3.8127e-06 0.00285 0.008788 1 0.11893 1 0.31521 1 0.018237 1 0.057284 1 0.043408 1 0.14517 1 12p loss 0 (0%) 390 NA NA NA NA 0.13137 1 0.68385 1 NA NA NA NA 0.31859 1 0.32991 1 0.34717 1 0.71209 1 12q loss 0 (0%) 388 NA NA NA NA 0.34047 1 0.38289 1 0.29227 1 0.38118 1 0.93334 1 0.038461 1 0.2244 1 0.51374 1 13q loss 0 (0%) 251 0.22929 1 0.60914 1 3.8618e-08 2.96e-05 0.00023056 0.166 0.14906 1 0.43995 1 0.58206 1 0.59895 1 0.85327 1 0.12301 1 14q loss 0 (0%) 327 0.00058 0.41 0.021694 1 0.0022505 1 0.014843 1 0.04584 1 0.042167 1 1.0053e-06 0.000762 9.8255e-08 7.5e-05 0.41247 1 0.27999 1 15q loss 0 (0%) 353 0.76434 1 0.11493 1 0.15185 1 0.0024635 1 0.0080068 1 0.0017183 1 0.42951 1 0.01301 1 0.19694 1 0.41908 1 16p loss 0 (0%) 337 0.32905 1 0.38804 1 1.9622e-05 0.0145 0.024685 1 0.38783 1 0.3047 1 0.077153 1 0.14277 1 0.72024 1 0.096535 1 16q loss 0 (0%) 317 0.065068 1 0.2372 1 0.00063885 0.45 0.0045279 1 0.17168 1 0.13181 1 0.072 1 0.0070809 1 0.92487 1 0.0060224 1 17p loss 0 (0%) 252 0.10165 1 1 1 7.0992e-05 0.0518 0.00012271 0.0892 0.010684 1 0.069425 1 0.20419 1 0.18418 1 0.21508 1 0.31641 1 17q loss 0 (0%) 372 0.27526 1 0.28227 1 0.052419 1 0.0049739 1 0.3043 1 0.94292 1 0.031504 1 0.055007 1 0.73763 1 0.70563 1 18p loss 0 (0%) 354 0.48986 1 0.65252 1 0.0052736 1 0.063726 1 0.21284 1 0.86007 1 0.25629 1 0.22177 1 0.60303 1 0.45555 1 18q loss 0 (0%) 321 0.36302 1 0.9322 1 0.0010711 0.744 0.34146 1 0.25337 1 0.78978 1 0.27725 1 0.013882 1 0.32934 1 0.31765 1 19p loss 0 (0%) 332 0.016553 1 0.015173 1 0.00057158 0.405 0.098363 1 0.70796 1 0.86703 1 0.0025224 1 0.016008 1 0.00091716 0.64 0.0027547 1 19q loss 0 (0%) 354 0.54085 1 0.2427 1 0.30708 1 0.051271 1 0.034579 1 0.10349 1 1 1 0.97431 1 0.10102 1 0.50257 1 20p loss 0 (0%) 380 0.26792 1 0.023682 1 0.086842 1 0.2122 1 0.041193 1 0.55514 1 0.58814 1 0.51432 1 0.31053 1 0.43491 1 20q loss 0 (0%) 375 0.037591 1 0.020284 1 0.0349 1 0.083978 1 0.077354 1 0.42857 1 0.0018684 1 0.001497 1 0.54539 1 0.59341 1 21q loss 0 (0%) 275 0.024673 1 0.016071 1 8.7138e-10 6.74e-07 9.2884e-07 0.000705 0.31758 1 0.24055 1 0.010769 1 0.013352 1 0.10942 1 0.21402 1 22q loss 0 (0%) 359 0.05705 1 0.15715 1 0.46574 1 0.47858 1 0.48505 1 0.20159 1 0.65218 1 0.11473 1 0.047787 1 0.090484 1 Xq loss 0 (0%) 382 0.63366 1 1 1 0.43053 1 0.91432 1 0.27702 1 0.00026116 0.187 0.60775 1 0.34665 1 0.087759 1 0.42054 1