Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL MIR_CNMF MIR_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 0 (0%) 465 0.053734 1 0.3366 1 0.093072 1 0.43621 1 0.33565 1 0.89807 1 0.040032 1 0.33322 1 0.69359 1 0.34382 1 0.1246 1 0.71429 1 1q gain 0 (0%) 408 0.52145 1 0.51809 1 0.72753 1 0.56258 1 1.067e-05 0.00984 0.20851 1 0.36512 1 0.79794 1 0.63953 1 0.61931 1 0.20645 1 0.45684 1 2p gain 0 (0%) 440 5.2076e-09 4.91e-06 1.0256e-10 9.71e-08 0.61454 1 1.315e-05 0.0121 3.0193e-11 2.87e-08 3.1321e-11 2.97e-08 0.036288 1 0.43918 1 8.6968e-05 0.0791 0.0045651 1 0.42647 1 0.20857 1 2q gain 0 (0%) 466 1.5275e-06 0.00142 6.4768e-07 0.000606 0.64763 1 0.0025452 1 1.4267e-08 1.34e-05 1.9996e-06 0.00186 0.033757 1 0.32914 1 0.0018348 1 0.0044742 1 0.53464 1 0.48051 1 3p gain 0 (0%) 460 0.40688 1 0.11848 1 0.10243 1 0.61945 1 0.0010206 0.902 0.89293 1 0.20096 1 0.46426 1 0.63314 1 0.88875 1 0.7967 1 0.61775 1 3q gain 0 (0%) 361 0.9483 1 0.0013313 1 0.73548 1 0.28353 1 1.017e-09 9.62e-07 0.00325 1 0.44667 1 0.24824 1 0.35198 1 0.67807 1 0.38684 1 0.44891 1 4p gain 0 (0%) 538 0.88827 1 0.49936 1 0.0046954 1 0.68829 1 0.087611 1 0.051009 1 0.014865 1 0.45762 1 0.95282 1 0.57286 1 0.27219 1 0.28592 1 4q gain 0 (0%) 553 0.94848 1 0.80472 1 0.85314 1 0.93754 1 0.33214 1 0.021357 1 0.020772 1 0.25723 1 0.91311 1 0.58536 1 0.0038492 1 0.047904 1 5p gain 0 (0%) 422 0.64068 1 0.27625 1 0.68772 1 0.48487 1 2.0895e-07 0.000196 0.34823 1 0.59868 1 0.19569 1 0.54422 1 0.90517 1 0.07671 1 0.3 1 5q gain 0 (0%) 535 0.03651 1 0.11803 1 0.49887 1 0.356 1 0.59734 1 0.41645 1 0.15656 1 0.58048 1 0.31644 1 0.65844 1 0.038975 1 0.42186 1 6p gain 0 (0%) 448 0.49191 1 0.0041248 1 0.87307 1 0.021175 1 1.188e-06 0.00111 0.00023802 0.214 0.54553 1 0.74449 1 0.15364 1 0.61917 1 0.29139 1 0.14736 1 6q gain 0 (0%) 507 0.75052 1 0.007087 1 0.89614 1 0.039617 1 1.0128e-05 0.00936 6.5849e-05 0.0601 0.14014 1 0.85668 1 0.0031371 1 0.35442 1 0.9301 1 0.41641 1 7p gain 0 (0%) 444 0.21389 1 0.15083 1 0.045585 1 0.0084301 1 9.1916e-08 8.64e-05 1.0538e-06 0.000984 0.40729 1 0.15792 1 0.083643 1 0.10863 1 0.94436 1 0.37148 1 7q gain 0 (0%) 416 0.087673 1 0.30333 1 0.35304 1 0.35667 1 1.0491e-05 0.00968 0.00049973 0.447 0.26607 1 0.094383 1 0.17509 1 0.17344 1 0.24028 1 0.49218 1 8p gain 0 (0%) 483 0.35484 1 0.12471 1 0.97718 1 0.013128 1 0.26443 1 0.95555 1 0.82971 1 0.23221 1 0.54669 1 0.2315 1 0.57854 1 0.34549 1 8q gain 0 (0%) 365 0.18409 1 0.41747 1 0.12828 1 0.088278 1 0.0086994 1 0.97486 1 0.78613 1 0.12478 1 0.0038502 1 0.37985 1 0.81157 1 0.79525 1 9p gain 0 (0%) 508 0.032484 1 0.50541 1 0.27997 1 0.31866 1 0.004457 1 0.021708 1 0.17329 1 0.59634 1 0.89614 1 0.58663 1 0.15685 1 0.74769 1 9q gain 0 (0%) 542 0.39655 1 0.27531 1 0.10378 1 0.61874 1 0.072618 1 0.22411 1 0.61056 1 0.20794 1 0.8134 1 0.048399 1 0.82915 1 0.73823 1 10p gain 0 (0%) 437 0.010556 1 5.378e-05 0.0492 0.78333 1 0.0076321 1 2.9523e-09 2.79e-06 0.001235 1 0.2939 1 0.45435 1 0.012621 1 0.86548 1 0.50717 1 0.96254 1 10q gain 0 (0%) 501 0.0084956 1 0.0025424 1 0.95872 1 0.016563 1 0.013535 1 0.029735 1 0.28258 1 0.51093 1 0.079979 1 0.31168 1 0.38032 1 0.56963 1 11p gain 0 (0%) 529 0.24374 1 0.40399 1 0.2234 1 0.33989 1 0.042977 1 0.015956 1 0.022531 1 0.0044087 1 0.042674 1 0.28394 1 0.12078 1 0.18341 1 11q gain 0 (0%) 507 0.38261 1 0.77579 1 0.9401 1 0.012474 1 7.9231e-05 0.0722 0.00067865 0.605 0.36933 1 0.45147 1 0.57713 1 0.22077 1 0.28109 1 0.43587 1 12p gain 0 (0%) 361 7.5575e-05 0.0689 1.2699e-05 0.0117 0.30575 1 4.4576e-05 0.0408 4.2687e-13 4.07e-10 3.948e-09 3.73e-06 0.36228 1 0.82455 1 1.464e-05 0.0135 0.00033023 0.297 0.18326 1 0.19382 1 12q gain 0 (0%) 447 0.000834 0.741 5.6491e-06 0.00524 0.53326 1 0.0020373 1 1.221e-14 1.17e-11 9.486e-06 0.00877 0.0093259 1 0.6627 1 0.00073145 0.65 0.002353 1 0.1021 1 0.11896 1 13q gain 0 (0%) 528 0.016757 1 0.22145 1 0.88927 1 0.0017428 1 0.0058752 1 0.0002544 0.229 0.82864 1 0.33561 1 0.4509 1 0.94867 1 0.28906 1 0.61843 1 14q gain 0 (0%) 535 0.010969 1 0.052066 1 0.34817 1 0.054636 1 0.97456 1 0.18847 1 0.064406 1 0.0097759 1 0.27288 1 0.036228 1 0.46011 1 0.64157 1 15q gain 0 (0%) 544 0.38177 1 0.6402 1 0.33659 1 0.45908 1 0.26953 1 0.66214 1 0.16581 1 0.82401 1 1 1 1 1 0.63843 1 0.54036 1 16p gain 0 (0%) 538 0.036799 1 0.022368 1 0.91941 1 0.3552 1 0.14897 1 0.14781 1 0.67479 1 0.10145 1 1 1 1 1 0.9259 1 0.51254 1 16q gain 0 (0%) 553 0.018331 1 0.00096084 0.85 0.21931 1 0.49092 1 0.59746 1 0.041976 1 0.51217 1 0.12387 1 NA NA NA NA 0.11882 1 0.26851 1 17p gain 0 (0%) 558 0.4335 1 0.12858 1 0.50862 1 0.27029 1 0.063978 1 0.43428 1 0.4141 1 0.79496 1 0.35173 1 0.63157 1 0.58019 1 0.36479 1 17q gain 0 (0%) 546 0.7286 1 0.2846 1 0.27071 1 0.24493 1 0.070509 1 0.33899 1 0.50852 1 0.92151 1 0.59097 1 0.68348 1 0.69524 1 0.46579 1 18p gain 0 (0%) 495 0.0072538 1 0.0011948 1 0.85151 1 0.15672 1 0.0014729 1 8.2246e-05 0.0748 0.0028287 1 0.073145 1 0.52655 1 0.61144 1 0.27146 1 0.58921 1 18q gain 0 (0%) 528 0.24954 1 0.61487 1 0.53139 1 0.56478 1 0.041953 1 0.021344 1 0.20572 1 0.45416 1 0.61417 1 0.43977 1 0.13648 1 0.79183 1 19p gain 0 (0%) 470 0.023836 1 0.020788 1 0.66379 1 0.19156 1 1.9503e-08 1.84e-05 0.00068256 0.607 0.015067 1 0.23515 1 0.74126 1 0.82177 1 0.67697 1 0.3114 1 19q gain 0 (0%) 477 0.022589 1 0.04697 1 0.62351 1 0.15994 1 6.8452e-07 0.00064 0.00036445 0.327 0.024237 1 0.26626 1 0.5578 1 0.52494 1 0.32769 1 0.21699 1 20p gain 0 (0%) 335 0.0017407 1 5.2601e-07 0.000493 0.20654 1 4.0831e-06 0.00379 3.867e-15 3.7e-12 4.0958e-12 3.9e-09 0.32174 1 0.57179 1 0.0037546 1 0.14405 1 0.56911 1 1 1 20q gain 0 (0%) 296 1.9449e-05 0.0178 3.3497e-13 3.2e-10 0.49653 1 1.6007e-06 0.00149 3.3043e-20 3.17e-17 9.6484e-17 9.23e-14 0.45641 1 0.17546 1 0.0032992 1 0.3947 1 0.35065 1 0.87726 1 21q gain 0 (0%) 499 0.6664 1 0.032214 1 0.98582 1 0.90641 1 7.0682e-06 0.00655 0.00018618 0.168 0.2896 1 0.25904 1 0.37056 1 0.17061 1 0.23062 1 0.68336 1 22q gain 0 (0%) 560 0.37902 1 0.83325 1 0.69186 1 0.64053 1 0.20458 1 0.83952 1 0.60354 1 0.70144 1 0.83266 1 1 1 0.043254 1 0.47395 1 Xq gain 0 (0%) 535 0.19353 1 0.026133 1 0.94929 1 0.60331 1 0.013886 1 0.10472 1 0.090381 1 0.32809 1 0.39338 1 0.4998 1 0.20333 1 0.76711 1 1p loss 0 (0%) 534 0.0044312 1 0.011222 1 0.28424 1 0.49019 1 0.77922 1 0.21819 1 0.50324 1 0.51377 1 0.73621 1 0.36082 1 1 1 1 1 1q loss 0 (0%) 547 0.01796 1 0.0042763 1 0.0041224 1 0.34687 1 0.33664 1 0.49735 1 0.64762 1 0.18907 1 0.79644 1 0.096428 1 0.3288 1 0.84338 1 2p loss 0 (0%) 543 0.76101 1 0.87146 1 0.90496 1 0.18135 1 0.57155 1 0.38326 1 0.33212 1 0.58514 1 0.17823 1 0.29035 1 0.83336 1 0.22889 1 2q loss 0 (0%) 539 0.78853 1 0.53048 1 0.81572 1 0.085826 1 0.53022 1 0.139 1 0.28727 1 0.66814 1 0.54632 1 0.24334 1 0.67592 1 0.10933 1 3p loss 0 (0%) 508 0.059245 1 0.012124 1 0.92473 1 0.04757 1 0.0046852 1 0.11825 1 0.86993 1 0.24993 1 0.018136 1 0.45827 1 0.19387 1 0.534 1 3q loss 0 (0%) 546 0.23936 1 0.086622 1 0.96379 1 0.18181 1 0.19779 1 0.19765 1 0.59221 1 0.60643 1 0.080309 1 0.27615 1 0.48902 1 0.68426 1 4p loss 0 (0%) 307 0.098908 1 0.080089 1 0.5163 1 0.023611 1 0.031235 1 0.88869 1 0.15459 1 0.17682 1 0.15212 1 0.29226 1 0.034353 1 0.010381 1 4q loss 0 (0%) 267 0.048907 1 0.020958 1 0.26936 1 0.014675 1 0.010102 1 0.76285 1 0.28585 1 0.092452 1 0.46976 1 0.03565 1 0.047057 1 0.00025273 0.227 5p loss 0 (0%) 484 0.37793 1 0.088016 1 0.18841 1 0.16226 1 0.012893 1 0.0046986 1 0.20395 1 0.15561 1 0.00040668 0.364 0.56173 1 0.91868 1 0.69874 1 5q loss 0 (0%) 397 0.00014435 0.131 2.2205e-05 0.0203 0.65511 1 0.0013784 1 0.00017345 0.157 1.6998e-07 0.00016 0.0084335 1 0.060411 1 0.00066396 0.592 0.28447 1 0.5329 1 0.59495 1 6p loss 0 (0%) 443 0.92286 1 0.052387 1 0.71601 1 0.79378 1 0.19037 1 0.051061 1 0.21208 1 0.40748 1 0.47979 1 0.79656 1 0.18022 1 1 1 6q loss 0 (0%) 371 0.96008 1 0.02382 1 0.82934 1 0.84428 1 0.079046 1 0.020217 1 0.098587 1 0.65295 1 0.12425 1 0.19354 1 0.21101 1 0.8119 1 7p loss 0 (0%) 478 0.61378 1 0.24622 1 0.18447 1 0.30391 1 0.074611 1 0.14622 1 0.38224 1 0.76663 1 0.94356 1 0.034714 1 0.025898 1 0.71828 1 7q loss 0 (0%) 521 0.33653 1 0.85539 1 0.43114 1 0.65245 1 0.26734 1 0.026685 1 0.34938 1 0.7556 1 0.57884 1 0.21966 1 0.053667 1 0.83667 1 8p loss 0 (0%) 334 0.75569 1 0.57144 1 0.45352 1 0.8599 1 0.0015057 1 0.07438 1 0.19909 1 0.3505 1 0.34002 1 0.91397 1 0.47139 1 0.19113 1 8q loss 0 (0%) 506 0.069699 1 0.034965 1 0.20143 1 0.36886 1 0.0020727 1 0.067527 1 0.076626 1 0.48452 1 0.039285 1 0.04403 1 0.78856 1 0.38041 1 9p loss 0 (0%) 357 0.00058515 0.523 0.0045562 1 0.73673 1 0.060265 1 0.029692 1 0.0010339 0.913 0.67382 1 0.97575 1 0.56685 1 0.13376 1 0.040209 1 0.3305 1 9q loss 0 (0%) 329 0.0013298 1 0.000371 0.332 0.14181 1 0.0065078 1 1.5109e-11 1.44e-08 0.0023216 1 0.653 1 0.88138 1 0.0027623 1 0.21167 1 0.10882 1 0.030881 1 10p loss 0 (0%) 502 0.43601 1 0.6233 1 0.3277 1 0.80588 1 0.89459 1 0.69472 1 0.19336 1 0.20523 1 0.96423 1 0.6594 1 0.1094 1 0.61294 1 10q loss 0 (0%) 479 0.6422 1 0.38031 1 0.099402 1 0.79852 1 0.1176 1 0.59135 1 0.25929 1 0.22741 1 0.76289 1 0.26 1 0.29786 1 0.21837 1 11p loss 0 (0%) 423 0.0060894 1 0.0052393 1 0.096389 1 0.26223 1 0.081567 1 0.0080164 1 0.55809 1 0.13329 1 0.021253 1 0.68689 1 0.78732 1 0.80869 1 11q loss 0 (0%) 461 0.13491 1 0.3915 1 0.013464 1 0.25784 1 0.18677 1 0.10287 1 0.82182 1 0.079117 1 0.073346 1 0.79656 1 0.29526 1 0.13697 1 12p loss 0 (0%) 518 0.29389 1 0.089145 1 1 1 0.11972 1 0.0081152 1 0.24182 1 0.97102 1 0.059675 1 0.29621 1 0.43977 1 0.59089 1 0.27694 1 12q loss 0 (0%) 493 0.19206 1 0.0019896 1 0.38899 1 0.27697 1 0.0027435 1 0.09417 1 0.83859 1 0.26609 1 0.14854 1 0.016182 1 0.42131 1 0.33484 1 13q loss 0 (0%) 307 0.12033 1 0.74033 1 0.90684 1 0.068734 1 0.00085663 0.76 1.2613e-06 0.00118 0.0029906 1 0.0043609 1 0.29707 1 0.98503 1 0.41785 1 0.89627 1 14q loss 0 (0%) 405 0.084244 1 0.15991 1 0.87522 1 0.91732 1 0.00011814 0.107 0.025628 1 0.96636 1 0.47856 1 0.045438 1 0.55716 1 0.4301 1 0.35573 1 15q loss 0 (0%) 349 0.0034623 1 0.0087178 1 0.0009143 0.81 0.0034965 1 7.1736e-11 6.8e-08 0.00018489 0.167 0.88355 1 0.88461 1 0.024465 1 0.44881 1 0.0063776 1 0.37541 1 16p loss 0 (0%) 298 0.91165 1 0.96935 1 0.19619 1 0.67708 1 0.027512 1 0.10491 1 0.96419 1 0.9312 1 0.35305 1 0.6109 1 0.27125 1 0.56098 1 16q loss 0 (0%) 209 0.91766 1 0.88697 1 0.040993 1 0.36236 1 0.02634 1 0.088619 1 0.73291 1 0.97296 1 0.49213 1 0.81181 1 0.2686 1 0.082632 1 17p loss 0 (0%) 140 0.18795 1 0.040644 1 0.89112 1 0.54515 1 0.2429 1 0.046266 1 0.52534 1 0.17806 1 0.29504 1 0.11924 1 0.33909 1 0.41755 1 17q loss 0 (0%) 237 0.010961 1 0.004494 1 0.024557 1 0.66305 1 0.59676 1 0.18552 1 0.18766 1 0.12744 1 0.12763 1 0.10867 1 0.0073363 1 0.28762 1 18p loss 0 (0%) 382 0.76652 1 0.93189 1 0.33033 1 0.41337 1 0.21552 1 0.012772 1 0.94108 1 0.23955 1 0.01799 1 0.20641 1 0.88053 1 0.91722 1 18q loss 0 (0%) 333 0.2018 1 0.75345 1 0.69971 1 0.60843 1 0.84525 1 0.45334 1 0.96308 1 0.13963 1 0.0028468 1 0.10282 1 0.66878 1 0.46685 1 19p loss 0 (0%) 424 0.53158 1 0.80858 1 0.15174 1 0.22455 1 0.17896 1 0.09958 1 0.027013 1 0.1077 1 0.4664 1 0.71031 1 0.90746 1 0.77834 1 19q loss 0 (0%) 424 0.12581 1 0.44841 1 0.31453 1 0.29572 1 0.27754 1 0.72276 1 0.070625 1 0.36267 1 1 1 0.87081 1 0.20091 1 0.31323 1 20p loss 0 (0%) 531 0.30354 1 0.52881 1 0.62489 1 0.3615 1 0.17171 1 0.09624 1 0.65678 1 0.44681 1 0.020756 1 0.075894 1 0.011573 1 0.89061 1 20q loss 0 (0%) 547 0.71663 1 0.18782 1 0.2757 1 0.73726 1 0.51769 1 0.73652 1 0.35183 1 0.26939 1 0.2454 1 0.6249 1 0.24834 1 1 1 21q loss 0 (0%) 418 0.34275 1 0.24828 1 0.31 1 0.063403 1 0.7934 1 0.051503 1 0.28555 1 0.38666 1 0.46045 1 0.56346 1 0.4644 1 0.96584 1 22q loss 0 (0%) 182 0.00012018 0.109 1.8045e-05 0.0166 0.055997 1 0.036336 1 0.0001765 0.16 0.0095015 1 0.039487 1 0.10113 1 0.080624 1 0.19052 1 0.0027861 1 0.38953 1 Xq loss 0 (0%) 468 0.07954 1 0.16145 1 0.036319 1 0.1501 1 0.085128 1 0.3158 1 1 1 0.46578 1 0.29467 1 0.82155 1 0.97526 1 0.38371 1