Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	184	0.067806	1	0.048926	1	NA	NA	NA	NA	0.49614	1	0.41048	1
1q gain	0 (0%)	182	0.1391	1	0.27529	1	0.55124	1	0.30047	1	0.32392	1	0.20143	1
3p gain	0 (0%)	182	0.25426	1	0.51869	1	0.063709	1	0.36154	1	0.16954	1	0.1549	1
3q gain	0 (0%)	181	0.13818	1	0.66401	1	0.019812	1	0.0056122	0.887	0.055044	1	0.035445	1
7p gain	0 (0%)	171	0.00028122	0.0461	0.07751	1	0.10944	1	0.13938	1	0.16967	1	0.59158	1
7q gain	0 (0%)	173	0.0022637	0.367	0.10069	1	0.18203	1	0.22732	1	0.47716	1	0.59838	1
8p gain	0 (0%)	179	0.010318	1	0.34739	1	0.39637	1	0.093491	1	0.85211	1	0.39466	1
8q gain	0 (0%)	168	5.5683e-05	0.00924	0.46175	1	0.085622	1	0.24348	1	0.11959	1	0.0032365	0.518
9p gain	0 (0%)	184	0.067806	1	0.48269	1	0.64438	1	0.62533	1	0.86178	1	0.41048	1
9q gain	0 (0%)	181	0.076152	1	0.32555	1	0.13177	1	0.22898	1	0.56934	1	0.56042	1
10q gain	0 (0%)	183	0.27765	1	0.56562	1	0.21118	1	0.30047	1	0.55024	1	0.17213	1
12q gain	0 (0%)	184	0.20104	1	0.26945	1	NA	NA	NA	NA	0.56651	1	1	1
16p gain	0 (0%)	184	0.59762	1	0.78281	1	0.77562	1	0.26108	1	0.49614	1	1	1
16q gain	0 (0%)	184	0.59762	1	0.78281	1	0.77562	1	0.26108	1	0.49614	1	1	1
5q loss	0 (0%)	182	0.013825	1	0.064663	1	0.063709	1	0.36154	1	0.089967	1	0.089196	1
6q loss	0 (0%)	180	0.015665	1	0.11615	1	0.071424	1	0.093491	1	0.31861	1	0.17555	1
8p loss	0 (0%)	140	0.0027811	0.448	0.00012943	0.0214	0.0032569	0.518	0.03313	1	0.019316	1	1	1
8q loss	0 (0%)	183	0.27765	1	0.38946	1	0.32899	1	0.38811	1	0.83383	1	0.30898	1
10p loss	0 (0%)	182	0.43857	1	0.39562	1	0.55124	1	0.30047	1	0.23419	1	0.024599	1
10q loss	0 (0%)	182	0.43857	1	0.73528	1	0.62481	1	0.86573	1	0.54503	1	1	1
12p loss	0 (0%)	177	0.19754	1	0.019746	1	0.13928	1	0.012348	1	0.068171	1	0.25176	1
13q loss	0 (0%)	175	0.0014499	0.236	0.21443	1	0.028377	1	0.034884	1	0.44875	1	0.64843	1
16q loss	0 (0%)	163	3.6601e-05	0.00611	0.039066	1	0.17983	1	0.19855	1	0.075425	1	0.10323	1
17p loss	0 (0%)	166	6.4272e-06	0.00109	0.096724	1	0.099643	1	0.017079	1	0.70477	1	0.90749	1
18p loss	0 (0%)	169	2.5168e-05	0.00423	0.21307	1	0.36285	1	0.2569	1	0.015596	1	0.12184	1
18q loss	0 (0%)	163	1.1029e-08	1.88e-06	0.16493	1	0.088629	1	0.2193	1	0.039835	1	0.18198	1
20p loss	0 (0%)	182	0.3632	1	0.064663	1	0.21118	1	0.13295	1	0.047343	1	0.024599	1
21q loss	0 (0%)	183	0.27765	1	0.56562	1	0.32899	1	0.096344	1	0.35189	1	0.8301	1
22q loss	0 (0%)	182	0.064646	1	0.39562	1	0.37713	1	0.45235	1	1	1	1	1