Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	0 (0%)	175	0.014312	1	0.21443	1	0.14449	1	0.12356	1	0.22953	1	0.52105	1
Amp Peak  2(3q26.2)	0 (0%)	160	0.00029969	0.0722	0.079632	1	0.3046	1	0.49455	1	0.46168	1	0.22022	1
Amp Peak  3(7p15.3)	0 (0%)	152	3.4954e-06	0.000898	0.052078	1	0.0078537	1	0.013544	1	0.39388	1	0.87608	1
Amp Peak  4(7q34)	0 (0%)	155	0.00015848	0.0391	0.0044078	0.961	0.0017861	0.407	0.00096923	0.228	0.23685	1	0.75212	1
Amp Peak  5(8p11.22)	0 (0%)	170	1.4353e-05	0.00367	0.26278	1	0.050773	1	0.26818	1	0.25806	1	0.38594	1
Amp Peak  6(8q21.13)	0 (0%)	141	4.818e-10	1.31e-07	0.0042874	0.939	0.0013714	0.32	0.0078444	1	0.071695	1	0.0448	1
Amp Peak  7(11q13.2)	0 (0%)	176	0.00049453	0.118	0.30394	1	0.19262	1	0.35527	1	0.84242	1	0.6197	1
Amp Peak  8(12q24.32)	0 (0%)	180	0.0020729	0.471	0.2628	1	0.89399	1	0.18343	1	0.89495	1	0.85703	1
Amp Peak  9(14q21.1)	0 (0%)	177	0.033321	1	0.14543	1	0.0090479	1	0.51824	1	0.24089	1	0.20315	1
Amp Peak 10(20q13.33)	0 (0%)	175	0.0057462	1	0.0034397	0.771	0.011845	1	0.0095596	1	0.67185	1	0.071103	1
Amp Peak 11(21q21.3)	0 (0%)	180	0.032325	1	0.20773	1	0.21799	1	0.2878	1	0.45541	1	0.53387	1
Amp Peak 12(Xp22.11)	0 (0%)	182	0.3632	1	1	1	0.73985	1	0.60613	1	0.6538	1	0.089196	1
Amp Peak 13(Xp22.11)	0 (0%)	182	0.72561	1	0.61273	1	1	1	0.73503	1	0.54503	1	0.39327	1
Amp Peak 14(Xp21.1)	0 (0%)	183	0.6796	1	0.38946	1	1	1	1	1	0.39034	1	0.50712	1
Amp Peak 15(Xq12)	0 (0%)	183	0.27765	1	0.18165	1	0.063709	1	0.020985	1	0.59254	1	0.38685	1
Amp Peak 16(Xq21.1)	0 (0%)	180	0.38966	1	0.20773	1	0.19947	1	0.23374	1	0.77631	1	0.40816	1
Amp Peak 17(Xq21.1)	0 (0%)	182	0.3632	1	0.0038534	0.852	0.52864	1	0.33157	1	0.81988	1	0.71606	1
Amp Peak 18(Xq21.31)	0 (0%)	182	0.1391	1	0.27529	1	0.3245	1	0.1381	1	0.93725	1	0.85297	1
Amp Peak 19(Xq25)	0 (0%)	183	0.049746	1	0.22635	1	0.39144	1	0.17266	1	0.31687	1	0.17213	1
Amp Peak 20(Xq25)	0 (0%)	181	1	1	0.25217	1	0.11797	1	0.4998	1	0.54011	1	0.26914	1
Amp Peak 21(Xq27.1)	0 (0%)	178	0.0066631	1	0.3959	1	0.83459	1	0.83055	1	0.029561	1	0.034531	1
Del Peak  1(1p31.3)	0 (0%)	165	0.043939	1	0.000722	0.171	0.0016936	0.388	0.0045759	0.993	0.026163	1	0.51326	1
Del Peak  2(1p21.3)	0 (0%)	171	0.009446	1	0.64333	1	0.94463	1	1	1	0.44602	1	0.60874	1
Del Peak  3(1q23.1)	0 (0%)	179	0.09595	1	0.16038	1	0.1356	1	0.11069	1	0.091576	1	0.042187	1
Del Peak  4(1q42.13)	0 (0%)	169	0.44828	1	0.0060255	1	0.73036	1	0.80713	1	0.84994	1	0.53403	1
Del Peak  5(2q22.1)	0 (0%)	165	6.0071e-05	0.015	0.0015	0.346	0.10959	1	0.033031	1	0.026163	1	0.00026622	0.0644
Del Peak  6(3p13)	0 (0%)	159	0.66804	1	0.026131	1	0.29377	1	0.030178	1	0.19279	1	0.85642	1
Del Peak  7(3q29)	0 (0%)	175	0.76761	1	0.059418	1	0.069436	1	0.022892	1	0.85104	1	0.85453	1
Del Peak  8(4q28.2)	0 (0%)	170	0.00021547	0.0526	0.00018949	0.0464	0.014889	1	0.09425	1	0.15786	1	0.14448	1
Del Peak  9(5q11.2)	0 (0%)	157	2.6312e-07	7e-05	0.00098005	0.229	0.090147	1	0.043301	1	0.079255	1	0.58959	1
Del Peak 10(5q21.1)	0 (0%)	154	9.4247e-12	2.59e-09	2.7711e-06	0.00072	0.0026924	0.606	0.0073726	1	0.18216	1	0.41997	1
Del Peak 11(6q15)	0 (0%)	128	2.585e-18	7.29e-16	8.9417e-12	2.47e-09	1.1317e-06	0.000298	3.9087e-05	0.00989	4.6434e-05	0.0117	0.032537	1
Del Peak 12(7q36.1)	0 (0%)	178	0.38223	1	0.75417	1	0.59632	1	0.48307	1	0.289	1	0.48088	1
Del Peak 13(8p21.3)	0 (0%)	79	1.6813e-08	4.51e-06	2.8011e-06	0.000725	6.8297e-05	0.017	0.00016443	0.0405	0.013255	1	0.30397	1
Del Peak 14(8p11.21)	0 (0%)	128	0.012424	1	0.00023411	0.0569	0.00091333	0.216	0.016389	1	0.36085	1	0.93344	1
Del Peak 15(9p22.3)	0 (0%)	172	0.00059935	0.143	0.32645	1	0.21617	1	0.26793	1	0.61504	1	1	1
Del Peak 16(10q23.31)	0 (0%)	122	7.2733e-07	0.000193	3.0091e-06	0.000776	4.7234e-08	1.26e-05	1.0049e-06	0.000265	0.018861	1	0.11524	1
Del Peak 17(11q23.2)	0 (0%)	164	0.062878	1	0.22339	1	0.87703	1	0.91563	1	0.096559	1	0.34634	1
Del Peak 18(12p13.2)	0 (0%)	148	7.0959e-05	0.0176	0.0066929	1	0.56234	1	0.096324	1	0.30686	1	0.36091	1
Del Peak 19(13q14.13)	0 (0%)	104	0.00031975	0.0767	0.003481	0.776	0.0014688	0.341	0.0047778	1	0.4117	1	0.5343	1
Del Peak 20(16q24.1)	0 (0%)	113	3.3265e-10	9.08e-08	0.0036034	0.8	0.022765	1	0.015816	1	0.0023043	0.521	0.027743	1
Del Peak 21(17p13.1)	0 (0%)	141	2.13e-09	5.73e-07	0.13082	1	0.028444	1	0.0041085	0.904	0.32788	1	0.24195	1
Del Peak 22(17q21.31)	0 (0%)	151	0.0069749	1	3.1444e-05	0.00799	2.6e-05	0.00663	5.5431e-05	0.0139	0.059362	1	0.21145	1
Del Peak 23(18q22.1)	0 (0%)	141	7.8623e-10	2.12e-07	0.6208	1	0.19551	1	0.44884	1	0.13623	1	0.21538	1
Del Peak 24(18q23)	0 (0%)	135	7.3901e-14	2.08e-11	0.41123	1	0.065401	1	0.13646	1	0.231	1	0.79867	1
Del Peak 25(21q22.2)	0 (0%)	126	1.944e-06	0.000507	7.9619e-14	2.23e-11	6.5932e-10	1.79e-07	1.9112e-12	5.29e-10	0.079722	1	0.017042	1
Del Peak 26(21q22.3)	0 (0%)	127	1.7666e-06	0.000463	5.5628e-13	1.55e-10	9.2387e-11	2.53e-08	8.0499e-13	2.24e-10	0.030061	1	0.0015652	0.36