Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	43	0.11887	1	0.24787	1	0.57307	1	0.60591	1
1q gain	0 (0%)	44	0.22441	1	0.012744	1	0.07827	1	0.16366	1
4p gain	0 (0%)	46	0.58751	1	0.41674	1	NA	NA	NA	NA
5p gain	0 (0%)	39	0.066188	1	1	1	1	1	1	1
5q gain	0 (0%)	42	0.062405	1	0.22097	1	1	1	1	1
6p gain	0 (0%)	44	0.023283	1	0.11057	1	0.10673	1	0.2354	1
6q gain	0 (0%)	42	0.03457	1	0.035405	1	0.047619	1	0.092586	1
7p gain	0 (0%)	38	0.0045215	1	0.22183	1	0.63218	1	0.28256	1
7q gain	0 (0%)	40	0.053612	1	0.11438	1	0.63218	1	0.28256	1
8p gain	0 (0%)	42	0.020469	1	0.58802	1	0.63218	1	0.68877	1
8q gain	0 (0%)	43	0.49758	1	0.056865	1	1	1	1	1
9p gain	0 (0%)	48	0.10055	1	0.50214	1	0.48768	1	NA	NA
9q gain	0 (0%)	45	0.015316	1	0.48428	1	0.10673	1	0.2354	1
11p gain	0 (0%)	48	0.45858	1	1	1	0.44828	1	NA	NA
12p gain	0 (0%)	44	1	1	0.77354	1	1	1	NA	NA
14q gain	0 (0%)	48	1	1	0.28173	1	1	1	NA	NA
15q gain	0 (0%)	43	0.20152	1	0.71178	1	1	1	NA	NA
16p gain	0 (0%)	45	0.54645	1	0.13985	1	0.57307	1	0.60591	1
17p gain	0 (0%)	44	0.0015761	0.383	0.0021616	0.523	1	1	NA	NA
17q gain	0 (0%)	46	0.066911	1	0.41674	1	0.57307	1	0.10345	1
18p gain	0 (0%)	45	0.30117	1	0.48428	1	1	1	NA	NA
18q gain	0 (0%)	43	0.49758	1	0.43974	1	1	1	1	1
19p gain	0 (0%)	42	0.0045973	1	0.58802	1	0.57307	1	0.10345	1
19q gain	0 (0%)	46	0.0024073	0.58	0.85052	1	NA	NA	NA	NA
20p gain	0 (0%)	40	0.31648	1	0.3343	1	1	1	1	1
20q gain	0 (0%)	37	0.25058	1	0.046325	1	1	1	1	1
21q gain	0 (0%)	45	0.63983	1	0.1644	1	1	1	NA	NA
22q gain	0 (0%)	46	1	1	1	1	0.44828	1	NA	NA
1p loss	0 (0%)	42	0.062405	1	0.19786	1	0.14395	1	0.055804	1
1q loss	0 (0%)	45	0.40327	1	1	1	1	1	1	1
2p loss	0 (0%)	41	0.90831	1	0.16332	1	0.63218	1	0.68877	1
2q loss	0 (0%)	43	0.89247	1	0.31084	1	1	1	1	1
3p loss	0 (0%)	41	0.13418	1	0.55919	1	0.10673	1	0.2354	1
3q loss	0 (0%)	39	0.40709	1	0.60042	1	0.18336	1	0.36272	1
4p loss	0 (0%)	44	0.17014	1	0.11057	1	1	1	1	1
4q loss	0 (0%)	44	0.29023	1	0.11057	1	1	1	1	1
5p loss	0 (0%)	47	0.6704	1	0.53325	1	1	1	1	1
5q loss	0 (0%)	47	1	1	1	1	0.48768	1	NA	NA
6p loss	0 (0%)	43	0.6202	1	0.24787	1	0.36398	1	0.48777	1
6q loss	0 (0%)	47	0.6704	1	0.19346	1	1	1	NA	NA
7p loss	0 (0%)	47	0.6704	1	0.19346	1	0.57307	1	0.60591	1
7q loss	0 (0%)	45	0.63983	1	0.13985	1	0.60591	1	0.66654	1
8p loss	0 (0%)	42	0.37556	1	0.42982	1	0.66284	1	0.11899	1
8q loss	0 (0%)	46	0.71023	1	0.11547	1	0.23153	1	0.31691	1
9p loss	0 (0%)	40	0.10359	1	0.16209	1	0.18336	1	0.012808	1
9q loss	0 (0%)	45	0.63983	1	0.65555	1	0.60591	1	0.66654	1
10p loss	0 (0%)	34	0.15458	1	0.19648	1	1	1	0.33975	1
10q loss	0 (0%)	31	0.071362	1	0.022736	1	0.064097	1	0.071807	1
11p loss	0 (0%)	36	0.3629	1	0.22144	1	0.40996	1	0.064734	1
11q loss	0 (0%)	40	0.066787	1	0.3343	1	0.18336	1	0.36272	1
12q loss	0 (0%)	47	0.4496	1	1	1	0.48768	1	NA	NA
13q loss	0 (0%)	28	0.17952	1	0.33366	1	0.71629	1	0.56007	1
14q loss	0 (0%)	36	0.079176	1	0.29856	1	0.22559	1	0.1502	1
15q loss	0 (0%)	42	0.37556	1	0.27039	1	0.0084291	1	0.01356	1
16p loss	0 (0%)	42	0.65036	1	1	1	0.34319	1	0.46646	1
16q loss	0 (0%)	31	0.93388	1	0.045702	1	0.68816	1	0.36832	1
17p loss	0 (0%)	43	0.22589	1	0.24787	1	1	1	1	1
17q loss	0 (0%)	46	0.035256	1	0.11547	1	0.57307	1	0.60591	1
18p loss	0 (0%)	43	1	1	0.8902	1	0.60591	1	0.66654	1
18q loss	0 (0%)	41	0.81829	1	1	1	0.60591	1	0.66654	1
19q loss	0 (0%)	46	0.71023	1	0.24769	1	1	1	NA	NA
20p loss	0 (0%)	46	0.11363	1	0.85052	1	0.34319	1	0.46646	1
21q loss	0 (0%)	43	0.13685	1	0.8902	1	1	1	1	1
22q loss	0 (0%)	36	0.42333	1	0.63852	1	0.70211	1	0.81668	1
Xq loss	0 (0%)	41	0.035046	1	0.071513	1	1	1	1	1