Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p32.1)	0 (0%)	36	0.15814	1	0.22144	1	0.12964	1	0.27836	1
Amp Peak  2(1q24.3)	0 (0%)	29	0.45084	1	0.40591	1	1	1	1	1
Amp Peak  3(4p15.2)	0 (0%)	35	0.2306	1	0.056734	1	0.69682	1	1	1
Amp Peak  4(5p14.2)	0 (0%)	30	0.62838	1	0.35555	1	0.69682	1	1	1
Amp Peak  5(6p21.1)	0 (0%)	39	0.64528	1	0.0030155	0.452	0.40996	1	0.74346	1
Amp Peak  6(6q25.1)	0 (0%)	37	0.044019	1	0.0028421	0.429	0.12964	1	0.27836	1
Amp Peak  7(7p15.3)	0 (0%)	32	0.00044338	0.0683	0.016607	1	0.11421	1	0.15191	1
Amp Peak  8(11q22.2)	0 (0%)	39	0.64528	1	0.13062	1	0.020471	1	0.046339	1
Amp Peak  9(12p13.32)	0 (0%)	36	0.079176	1	0.39502	1	0.09272	1	0.22525	1
Amp Peak 10(12q15)	0 (0%)	25	5.3495e-05	0.0084	5.9184e-08	9.47e-06	2.1867e-05	0.00348	2.9088e-05	0.0046
Amp Peak 11(17p12)	0 (0%)	33	0.020894	1	0.76146	1	0.19167	1	0.10279	1
Amp Peak 12(19p13.2)	0 (0%)	30	0.0057122	0.851	0.77103	1	0.40996	1	0.064734	1
Amp Peak 13(Xq21.1)	0 (0%)	41	0.21286	1	0.080682	1	1	1	1	1
Del Peak  1(1p36.32)	0 (0%)	33	0.53349	1	0.05007	1	0.22559	1	0.09853	1
Del Peak  2(1p32.3)	0 (0%)	38	0.0010276	0.157	0.52383	1	0.06382	1	0.029481	1
Del Peak  3(1q44)	0 (0%)	33	0.015179	1	0.0021166	0.322	0.69682	1	1	1
Del Peak  4(2q37.3)	0 (0%)	27	0.073836	1	0.21231	1	0.2723	1	0.34532	1
Del Peak  5(3p21.31)	0 (0%)	36	0.00028923	0.0451	0.015691	1	0.23785	1	0.056892	1
Del Peak  6(3q25.1)	0 (0%)	34	0.019832	1	0.090886	1	0.12964	1	0.038823	1
Del Peak  7(4q35.1)	0 (0%)	26	0.097718	1	0.30012	1	0.26417	1	0.26417	1
Del Peak  8(5q23.3)	0 (0%)	41	0.5489	1	1	1	1	1	1	1
Del Peak  9(6q15)	0 (0%)	37	0.61995	1	0.53249	1	0.66284	1	0.11899	1
Del Peak 10(7q36.3)	0 (0%)	37	0.37596	1	0.53249	1	0.66284	1	0.74064	1
Del Peak 11(8p23.2)	0 (0%)	35	0.056138	1	0.066075	1	0.24903	1	0.076925	1
Del Peak 12(9p21.3)	0 (0%)	27	0.0004318	0.0669	0.039443	1	0.70211	1	0.23994	1
Del Peak 13(9q34.3)	0 (0%)	36	0.85732	1	0.11906	1	1	1	1	1
Del Peak 14(10p15.3)	0 (0%)	28	0.26587	1	0.72798	1	0.46568	1	0.42177	1
Del Peak 15(11p15.5)	0 (0%)	28	0.59122	1	1	1	1	1	0.43786	1
Del Peak 16(11q22.3)	0 (0%)	30	0.0067239	0.995	0.20476	1	0.71629	1	0.82541	1
Del Peak 17(11q24.3)	0 (0%)	28	0.089248	1	0.17735	1	1	1	1	1
Del Peak 18(12p12.3)	0 (0%)	38	0.11268	1	0.22183	1	0.45427	1	0.78411	1
Del Peak 19(13q14.2)	0 (0%)	14	1	1	0.21229	1	0.43348	1	0.62939	1
Del Peak 20(14q24.1)	0 (0%)	26	0.030254	1	0.36078	1	0.2723	1	0.34532	1
Del Peak 21(17p13.1)	0 (0%)	36	0.022817	1	0.043736	1	0.40576	1	0.44308	1
Del Peak 22(17q25.3)	0 (0%)	37	0.41108	1	0.68071	1	1	1	1	1
Del Peak 23(19p13.3)	0 (0%)	36	0.14712	1	0.079699	1	1	1	1	1
Del Peak 24(19q13.33)	0 (0%)	34	0.86628	1	0.14944	1	0.46568	1	0.42177	1
Del Peak 25(21q22.3)	0 (0%)	31	0.25378	1	0.52019	1	0.70211	1	0.81668	1
Del Peak 26(Xq21.1)	0 (0%)	25	0.48941	1	0.23359	1	0.46214	1	0.57896	1
Del Peak 27(Xq28)	0 (0%)	26	0.63625	1	0.021132	1	0.27418	1	0.25097	1