Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(Xq22.3)	0 (0%)	481	1.6321e-06	0.000328	0.49134	1	0.85601	1	0.12945	1	0.60292	1	0.56156	1	0.084852	1	0.039767	1
Del Peak  2(2p23.1)	0 (0%)	485	3.571e-10	7.57e-08	2.8155e-05	0.00532	0.7724	1	0.017869	1	3.8773e-06	0.00076	5.4638e-06	0.00107	1.271e-06	0.000258	3.6767e-07	7.57e-05
Del Peak  3(2q35)	0 (0%)	486	5.956e-12	1.27e-09	2.3924e-05	0.00455	0.56155	1	0.0028747	0.443	1.5865e-05	0.00308	3.4259e-06	0.000675	1.271e-06	0.000258	3.6767e-07	7.57e-05
Del Peak  4(5p15.2)	0 (0%)	493	0.3481	1	0.37055	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Del Peak  6(6q22.31)	0 (0%)	491	0.00036048	0.0634	0.0054539	0.774	0.037905	1	0.79799	1	0.014702	1	0.0058722	0.828	0.013813	1	0.0074995	1
Del Peak  8(7q34)	0 (0%)	493	0.64117	1	0.79883	1	NA	NA	NA	NA	0.74806	1	0.53141	1	0.68886	1	0.82896	1
Del Peak  9(8p23.2)	0 (0%)	493	1.8464e-05	0.00356	0.047002	1	NA	NA	NA	NA	0.036567	1	0.018577	1	0.007784	1	0.005026	0.729
Del Peak 10(8p22)	0 (0%)	493	1.8464e-05	0.00356	0.047002	1	NA	NA	NA	NA	0.036567	1	0.018577	1	0.007784	1	0.005026	0.729
Del Peak 11(8p12)	0 (0%)	493	1.8464e-05	0.00356	0.047002	1	NA	NA	NA	NA	0.036567	1	0.018577	1	0.007784	1	0.005026	0.729
Del Peak 12(8q24.22)	0 (0%)	490	4.6104e-05	0.00853	0.002412	0.374	0.83694	1	0.05495	1	0.0014353	0.239	0.00065038	0.113	0.00019214	0.0344	8.8476e-05	0.0159
Del Peak 13(9q21.13)	0 (0%)	474	1.1701e-13	2.5e-11	0.11387	1	0.18242	1	0.013559	1	0.15056	1	0.10068	1	0.03936	1	0.029281	1
Del Peak 14(10q21.2)	0 (0%)	486	0.00055763	0.0976	0.065991	1	0.16234	1	1	1	0.023047	1	0.0048898	0.724	0.43568	1	0.56293	1
Del Peak 15(10q23.31)	0 (0%)	486	3.3663e-05	0.00633	0.018235	1	0.033562	1	0.064148	1	0.0076961	1	0.0014182	0.238	0.04199	1	0.014361	1
Del Peak 16(11p15.1)	0 (0%)	490	7.7423e-08	1.6e-05	0.0094745	1	0.49868	1	1	1	0.014805	1	0.041902	1	0.039885	1	0.033299	1
Del Peak 17(13q12.3)	0 (0%)	482	0.022703	1	0.0011907	0.205	0.38844	1	0.43998	1	0.0014282	0.239	0.0048899	0.724	0.057385	1	0.02354	1
Del Peak 18(13q21.31)	0 (0%)	480	0.027241	1	0.029699	1	0.090753	1	1	1	0.0017586	0.286	3.4771e-05	0.0065	0.0065195	0.913	0.0016878	0.277
Del Peak 19(15q25.3)	0 (0%)	489	0.0013276	0.226	0.012968	1	0.44371	1	0.081715	1	0.027025	1	0.013975	1	0.0030147	0.461	0.0022936	0.365
Del Peak 21(16q23.3)	0 (0%)	491	0.048385	1	0.12525	1	0.44371	1	0.10254	1	0.13826	1	0.28971	1	0.22313	1	0.29157	1
Del Peak 22(17p13.1)	0 (0%)	489	0.0018066	0.291	0.88398	1	1	1	1	1	0.61925	1	0.59383	1	0.36425	1	0.31344	1
Del Peak 23(18p11.21)	0 (0%)	493	0.0002043	0.0364	0.19007	1	1	1	0.36851	1	0.22022	1	0.11979	1	0.074254	1	0.067089	1
Del Peak 24(18q22.2)	0 (0%)	492	0.0013394	0.226	0.061306	1	1	1	0.25562	1	0.10205	1	0.040531	1	0.026078	1	0.01383	1
Del Peak 25(19p13.2)	0 (0%)	491	0.004529	0.675	0.0016453	0.271	0.68193	1	0.25562	1	0.0049121	0.724	0.0017549	0.286	0.00066375	0.115	0.00034244	0.0606
Del Peak 28(21q21.1)	0 (0%)	488	5.7205e-05	0.0105	0.31895	1	0.14723	1	0.2062	1	0.25242	1	0.37767	1	0.075696	1	0.073182	1
Del Peak 29(22q13.1)	0 (0%)	411	1.4167e-91	3.09e-89	7.0997e-05	0.013	0.20537	1	0.079474	1	1.859e-08	3.9e-06	1.9913e-06	0.000398	0.0034263	0.521	0.002301	0.365
Del Peak 30(22q13.2)	0 (0%)	411	1.4167e-91	3.09e-89	7.0997e-05	0.013	0.20537	1	0.079474	1	1.859e-08	3.9e-06	1.9913e-06	0.000398	0.0034263	0.521	0.002301	0.365
Del Peak 31(22q13.31)	0 (0%)	411	1.4167e-91	3.09e-89	7.0997e-05	0.013	0.20537	1	0.079474	1	1.859e-08	3.9e-06	1.9913e-06	0.000398	0.0034263	0.521	0.002301	0.365
Del Peak 32(22q13.32)	0 (0%)	410	1.1632e-89	2.5e-87	3.6731e-05	0.00683	0.20537	1	0.079474	1	9.8616e-09	2.08e-06	1.0407e-06	0.000212	0.0020384	0.326	0.0012301	0.21
Del Peak 33(Xq22.1)	0 (0%)	491	0.073283	1	0.43302	1	0.099343	1	0.11999	1	0.63187	1	0.30879	1	0.45272	1	0.39006	1
Del Peak 34(Xq22.3)	0 (0%)	493	0.05392	1	0.047002	1	0.28073	1	0.36851	1	0.086458	1	0.11979	1	0.074254	1	0.067089	1