Broad GDAC Analyses Status
analyses__2013_05_23__prad Run for Tumor Type: PRAD

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
PRAD2151571871519801760187083

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-CoMut1.500010
4TP-CoMut2.000010
5TP-CoMutCV00010
6TP-CoMutMerged00010
7TP-CopyNumber_Clustering_CNMF00010
8TP-CopyNumber_Gistic200010
9TP-CopyNumber_Gistic2_Analysis00010
10TP-CopyNumber_Gistic2_Postprocess_Focal00010
11TP-Correlate_Clinical_vs_CopyNumber_Arm00010
12TP-Correlate_Clinical_vs_CopyNumber_Focal00010
13TP-Correlate_Clinical_vs_Methylation00010
14TP-Correlate_Clinical_vs_miR10000
15TP-Correlate_Clinical_vs_miRseq00010
16TP-Correlate_Clinical_vs_Molecular_Subtypes00010
17TP-Correlate_Clinical_vs_mRNA10000
18TP-Correlate_Clinical_vs_mRNAseq00010
19TP-Correlate_Clinical_vs_Mutation00001
20TP-Correlate_Clinical_vs_RPPA10000
21TP-Correlate_CopyNumber_vs_miR10000
22TP-Correlate_CopyNumber_vs_mRNA10000
23TP-Correlate_CopyNumber_vs_mRNAseq00010
24TP-Correlate_Methylation_vs_mRNA00010
25TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
26TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
27TP-Correlate_molecularSubtype_vs_Mutation00001
28TP-GenerateStickFigures1.500010
29TP-GenerateStickFigures2.000010
30TP-GenerateStickFiguresCV00010
31TP-GenerateStickFiguresMerged00010
32TP-LegoPlotter1.500010
33TP-LegoPlotter2.000010
34TP-LegoPlotterCV00010
35TP-LegoPlotterMerged00010
36TP-MergeMutSigRunResults00010
37TP-Methylation_Clustering_CNMF00010
38TP-Methylation_Preprocess00010
39TP-miR_Clustering_CNMF10000
40TP-miR_Clustering_Consensus10000
41TP-miR_FindDirectTargets10000
42TP-miRseq_Clustering_CNMF00010
43TP-miRseq_Clustering_Consensus00010
44TP-miRseq_Mature_Clustering_CNMF00010
45TP-miRseq_Mature_Clustering_Consensus00010
46TP-miRseq_Mature_Preprocess00010
47TP-miRseq_Preprocess00010
48TP-mRNA_Clustering_CNMF10000
49TP-mRNA_Clustering_Consensus10000
50TP-mRNA_Preprocess_Median10000
51TP-mRNAseq_Clustering_CNMF00010
52TP-mRNAseq_Clustering_Consensus00010
53TP-Mutation_Assessor00010
54TP-MutSigNozzleReport1.500010
55TP-MutSigNozzleReport2.000010
56TP-MutSigNozzleReportCV00010
57TP-MutSigNozzleReportMerged00010
58TP-MutSigPreprocess1.500010
59TP-MutSigPreprocess2.000010
60TP-MutSigRun1.500010
61TP-MutSigRun2.000010
62TP-MutSigRunCV00010
63TP-Paradigm_mRNA10000
64TP-Paradigm_mRNA_And_CopyNumber10000
65TP-Paradigm_Prepare_mRNA10000
66TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
67TP-Paradigm_Prepare_RNASeq00010
68TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
69TP-Paradigm_Preprocess_mRNA10000
70TP-ParadigmPreprocess_mRNA10000
71TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
72TP-Paradigm_Preprocess_RNASeq00010
73TP-ParadigmPreprocess_RNASeq00010
74TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
75TP-Paradigm_Report_Preprocess_mRNA10000
76TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
77TP-Paradigm_Report_Preprocess_RNASeq00010
78TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
79TP-Paradigm_RNASeq00010
80TP-Paradigm_RNASeq_And_Copy_Number00010
81TP-Pathway_FindEnrichedGenes10000
82TP-Pathway_Hotnet00010
83TP-Pathway_Paradigm_mRNA10000
84TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
85TP-Pathway_Paradigm_RNASeq00010
86TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
87TP-ProcessCoverageForMutSig1.500010
88TP-ProcessCoverageForMutSig2.000010
89TP-RPPA_Clustering_CNMF10000
90TP-RPPA_Clustering_Consensus10000
Total2500632

This table generated on Thu Jun 27 17:12:06 2013