Broad GDAC analyses__2013_05_23__skcm Run Status : SKCM

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
SKCM	336	211	316	119	316	0	282	0	283	164	264

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	Pipeline	NotRunnable	Successful
1	TM-Aggregate_Gene_Status	0	1
2	TM-Aggregate_Molecular_Subtype_Clusters	0	1
3	TM-CoMut1.5	0	1
4	TM-CoMut2.0	0	1
5	TM-CoMutCV	0	1
6	TM-CoMutMerged	0	1
7	TM-CopyNumber_Clustering_CNMF	0	1
8	TM-CopyNumber_Gistic2	0	1
9	TM-CopyNumber_Gistic2_Analysis	0	1
10	TM-CopyNumber_Gistic2_Postprocess_Focal	0	1
11	TM-Correlate_Clinical_vs_CopyNumber_Arm	0	1
12	TM-Correlate_Clinical_vs_CopyNumber_Focal	0	1
13	TM-Correlate_Clinical_vs_Methylation	0	1
14	TM-Correlate_Clinical_vs_miR	1	0
15	TM-Correlate_Clinical_vs_miRseq	0	1
16	TM-Correlate_Clinical_vs_Molecular_Subtypes	0	1
17	TM-Correlate_Clinical_vs_mRNA	1	0
18	TM-Correlate_Clinical_vs_mRNAseq	0	1
19	TM-Correlate_Clinical_vs_Mutation	0	1
20	TM-Correlate_Clinical_vs_RPPA	0	1
21	TM-Correlate_CopyNumber_vs_miR	1	0
22	TM-Correlate_CopyNumber_vs_mRNA	1	0
23	TM-Correlate_CopyNumber_vs_mRNAseq	0	1
24	TM-Correlate_Methylation_vs_mRNA	0	1
25	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1
26	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1
27	TM-Correlate_molecularSubtype_vs_Mutation	0	1
28	TM-GenerateStickFigures1.5	0	1
29	TM-GenerateStickFigures2.0	0	1
30	TM-GenerateStickFiguresCV	0	1
31	TM-GenerateStickFiguresMerged	0	1
32	TM-LegoPlotter1.5	0	1
33	TM-LegoPlotter2.0	0	1
34	TM-LegoPlotterCV	0	1
35	TM-LegoPlotterMerged	0	1
36	TM-MergeMutSigRunResults	0	1
37	TM-Methylation_Clustering_CNMF	0	1
38	TM-Methylation_Preprocess	0	1
39	TM-miR_Clustering_CNMF	1	0
40	TM-miR_Clustering_Consensus	1	0
41	TM-miR_FindDirectTargets	1	0
42	TM-miRseq_Clustering_CNMF	0	1
43	TM-miRseq_Clustering_Consensus	0	1
44	TM-miRseq_Mature_Clustering_CNMF	0	1
45	TM-miRseq_Mature_Clustering_Consensus	0	1
46	TM-miRseq_Mature_Preprocess	0	1
47	TM-miRseq_Preprocess	0	1
48	TM-mRNA_Clustering_CNMF	1	0
49	TM-mRNA_Clustering_Consensus	1	0
50	TM-mRNA_Preprocess_Median	1	0
51	TM-mRNAseq_Clustering_CNMF	0	1
52	TM-mRNAseq_Clustering_Consensus	0	1
53	TM-Mutation_Assessor	0	1
54	TM-MutSigNozzleReport1.5	0	1
55	TM-MutSigNozzleReport2.0	0	1
56	TM-MutSigNozzleReportCV	0	1
57	TM-MutSigNozzleReportMerged	0	1
58	TM-MutSigPreprocess1.5	0	1
59	TM-MutSigPreprocess2.0	0	1
60	TM-MutSigRun1.5	0	1
61	TM-MutSigRun2.0	0	1
62	TM-MutSigRunCV	0	1
63	TM-Paradigm_mRNA	1	0
64	TM-Paradigm_mRNA_And_CopyNumber	1	0
65	TM-Paradigm_Prepare_mRNA	1	0
66	TM-Paradigm_Prepare_mRNA_And_Copy_Number	1	0
67	TM-Paradigm_Prepare_RNASeq	0	1
68	TM-Paradigm_Prepare_RNASeq_And_Copy_Number	0	1
69	TM-Paradigm_Preprocess_mRNA	1	0
70	TM-ParadigmPreprocess_mRNA	1	0
71	TM-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0
72	TM-Paradigm_Preprocess_RNASeq	0	1
73	TM-ParadigmPreprocess_RNASeq	0	1
74	TM-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	1
75	TM-Paradigm_Report_Preprocess_mRNA	1	0
76	TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0
77	TM-Paradigm_Report_Preprocess_RNASeq	0	1
78	TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	1
79	TM-Paradigm_RNASeq	0	1
80	TM-Paradigm_RNASeq_And_Copy_Number	0	1
81	TM-Pathway_FindEnrichedGenes	1	0
82	TM-Pathway_Hotnet	0	1
83	TM-Pathway_Paradigm_mRNA	1	0
84	TM-Pathway_Paradigm_mRNA_And_Copy_Number	1	0
85	TM-Pathway_Paradigm_RNASeq	0	1
86	TM-Pathway_Paradigm_RNASeq_And_Copy_Number	0	1
87	TM-ProcessCoverageForMutSig1.5	0	1
88	TM-ProcessCoverageForMutSig2.0	0	1
89	TM-RPPA_Clustering_CNMF	0	1
90	TM-RPPA_Clustering_Consensus	0	1
	Total	22	68

This table generated on Thu Jun 27 17:12:07 2013

Broad GDAC Analyses Status analyses__2013_05_23__skcm Run for Tumor Type: SKCM

Broad GDAC Analyses Status
analyses__2013_05_23__skcm Run for Tumor Type: SKCM